BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate
3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (224 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 224

 Score =  451 bits (1161), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
           MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY
Sbjct: 1   MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60

Query: 61  SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE 120
           SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE
Sbjct: 61  SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE 120

Query: 121 TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180
           TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS
Sbjct: 121 TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180

Query: 181 RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID 224
           RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID
Sbjct: 181 RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID 224


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 25.4 bits (54), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 49  FGADVIRSLRSYSDSVFDCHL----MISSIDSHINIIADAGCDIITFHPESSPHIRRSLR 104
           F   +  +L  +S    DC +    +  S+D+  NII      +IT    S  H +    
Sbjct: 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVIT--SISLDHEKILGN 160

Query: 105 TIHAMGKKTGVAINPETPVAILEDVIDEIDMILI 138
           T+ A+ K     I P  PV I   V DE+  IL+
Sbjct: 161 TVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILV 194


>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 869

 Score = 23.9 bits (50), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 107 HAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNP 143
           + +G+  G+ I  E    I+ + ID+I+ IL+ T  P
Sbjct: 223 NWIGRSEGMEIRWE----IVSNTIDQIEEILVYTTRP 255


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 23.5 bits (49), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 200 FFNQKGEISYAKRLND 215
           F+N+KGEI   K +ND
Sbjct: 509 FYNEKGEILLDKAIND 524


>gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 299

 Score = 23.1 bits (48), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 44  VPNISFGADVIRS--LRSYSDSVFDC 67
           +PN  F  D+I +    SY+DS+FDC
Sbjct: 112 LPNQYF-LDMIEAHFFDSYNDSIFDC 136


>gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 274

 Score = 23.1 bits (48), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 6/36 (16%), Positives = 22/36 (61%)

Query: 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKR 212
           G+T +    +++ G D++  G+  ++++  + +++R
Sbjct: 46  GITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81


>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 22.3 bits (46), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162
           L  ++   D+IL         GQ+ +  TIP +++A+
Sbjct: 8   LRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEAR 44


>gi|254780762|ref|YP_003065175.1| recombination protein RecR [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 201

 Score = 21.9 bits (45), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 134 DMILIMTVNPGFGGQQLIESTIPKIRQAKALIG 166
           ++I I+   PGFG +    +T+  +++ + L+G
Sbjct: 12  NLIKILARIPGFGPRSARRATLHLVKKKEQLLG 44


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,166
Number of Sequences: 1233
Number of extensions: 5612
Number of successful extensions: 28
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 13
length of query: 224
length of database: 328,796
effective HSP length: 71
effective length of query: 153
effective length of database: 241,253
effective search space: 36911709
effective search space used: 36911709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)