254780976
Holliday junction resolvase YqgF
GeneID in NCBI database: | 8209998 | Locus tag: | CLIBASIA_04385 |
Protein GI in NCBI database: | 254780976 | Protein Accession: | YP_003065389.1 |
Gene range: | -(973456, 973938) | Protein Length: | 160aa |
Gene description: | Holliday junction resolvase YqgF | ||
COG prediction: | [L] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) | ||
KEGG prediction: | Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] | ||
SEED prediction: | Putative Holliday junction resolvase (EC 3.1.-.-) | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | |||
315122522 | 167 | Holliday junction resolvase YqgF [Candidatus Liberibact | 1 | 2e-76 | |
209549118 | 163 | Holliday junction resolvase-like protein [Rhizobium leg | 1 | 2e-47 | |
218661529 | 166 | holliday junction resolvase protein [Rhizobium etli IE4 | 1 | 2e-47 | |
327192100 | 164 | holliday junction resolvase protein [Rhizobium etli CNP | 1 | 2e-47 | |
86357479 | 164 | holliday junction resolvase protein [Rhizobium etli CFN | 1 | 3e-47 | |
190891542 | 164 | holliday junction resolvase [Rhizobium etli CIAT 652] L | 1 | 4e-47 | |
222085624 | 164 | holliday junction resolvase protein [Agrobacterium radi | 1 | 1e-46 | |
222148317 | 158 | Holliday junction resolvase-like protein [Agrobacterium | 1 | 5e-46 | |
241204443 | 164 | Holliday junction resolvase-like protein [Rhizobium leg | 1 | 6e-46 | |
325292676 | 159 | Holliday junction resolvase [Agrobacterium sp. H13-3] L | 1 | 6e-46 |
>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 167 | Back alignment and organism information |
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Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/159 (88%), Positives = 152/159 (95%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ Sbjct: 61 SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+ Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 163 | Back alignment and organism information |
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>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771] Length = 166 | Back alignment and organism information |
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>gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512] Length = 164 | Back alignment and organism information |
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>gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42] Length = 164 | Back alignment and organism information |
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>gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652] Length = 164 | Back alignment and organism information |
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>gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84] Length = 164 | Back alignment and organism information |
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>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4] Length = 158 | Back alignment and organism information |
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>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 | Back alignment and organism information |
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>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3] Length = 159 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
PRK00109 | 138 | PRK00109, PRK00109, Holliday junction resolvase-like pr | 1e-37 | |
COG0816 | 141 | COG0816, COG0816, Predicted endonuclease involved in re | 1e-32 | |
TIGR00250 | 130 | TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF | 4e-21 | |
pfam03652 | 134 | pfam03652, UPF0081, Uncharacterized protein family (UPF | 9e-38 | |
smart00732 | 99 | smart00732, YqgFc, Likely ribonuclease with RNase H fol | 2e-18 |
>gnl|CDD|178870 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed | Back alignment and domain information |
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>gnl|CDD|31158 COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B | Back alignment and domain information |
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>gnl|CDD|129352 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF | Back alignment and domain information |
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>gnl|CDD|146342 pfam03652, UPF0081, Uncharacterized protein family (UPF0081) | Back alignment and domain information |
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>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
PRK00109 | 141 | Holliday junction resolvase-like protein; Reviewed | 100.0 | |
pfam03652 | 134 | UPF0081 Uncharacterized protein family (UPF0081). | 100.0 | |
COG0816 | 141 | Predicted endonuclease involved in recombination (possi | 100.0 | |
TIGR00250 | 133 | TIGR00250 conserved hypothetical protein TIGR00250; Int | 100.0 | |
COG2433 | 652 | Uncharacterized conserved protein [Function unknown] | 97.7 | |
pfam04312 | 138 | DUF460 Protein of unknown function (DUF460). Archaeal p | 97.33 | |
TIGR00228 | 158 | ruvC crossover junction endodeoxyribonuclease RuvC; Int | 90.74 | |
smart00732 | 99 | YqgFc Likely ribonuclease with RNase H fold. YqgF prote | 99.95 | |
PRK00039 | 169 | ruvC Holliday junction resolvase; Reviewed | 97.53 | |
cd00529 | 154 | RuvC_resolvase Holliday junction resolvases (HJRs) are | 97.51 | |
COG2183 | 780 | Tex Transcriptional accessory protein [Transcription] | 97.41 | |
pfam02075 | 148 | RuvC Crossover junction endodeoxyribonuclease RuvC. | 97.16 | |
COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [Trans | 95.78 | |
COG0817 | 160 | RuvC Holliday junction resolvasome, endonuclease subuni | 95.16 | |
COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Transcript | 95.1 | |
PRK09698 | 302 | D-allose kinase; Provisional | 94.05 |
>PRK00109 Holliday junction resolvase-like protein; Reviewed | Back alignment and domain information |
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>pfam03652 UPF0081 Uncharacterized protein family (UPF0081) | Back alignment and domain information |
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>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B | Back alignment and domain information |
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>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination | Back alignment and domain information |
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>COG2433 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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>pfam04312 DUF460 Protein of unknown function (DUF460) | Back alignment and domain information |
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>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination | Back alignment and domain information |
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>smart00732 YqgFc Likely ribonuclease with RNase H fold | Back alignment and domain information |
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>PRK00039 ruvC Holliday junction resolvase; Reviewed | Back alignment and domain information |
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>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination | Back alignment and domain information |
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>COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
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>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC | Back alignment and domain information |
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>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
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>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
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>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
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>PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
1vhx_A | 150 | Crystal Structure Of Putative Holliday Junction Res | 4e-32 | |
1nmn_A | 138 | Structure Of Yqgf From Escherichia Coli, A Hypothet | 1e-30 | |
1ovq_A | 138 | Solution Structure Of The Hypothetical Protein Yqgf | 2e-30 | |
1nu0_A | 138 | Structure Of The Double Mutant (L6m; F134m, Semet F | 1e-28 | |
1iv0_A | 98 | Solution Structure Of The Yqgf-Family Protein (N-Te | 5e-11 |
>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase Length = 150 | Back alignment and structure |
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L I I ++G Sbjct: 4 RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P N NG+ GPR +++ F +++ VP V WDERLTT +A++ LI +VSR+KR + Sbjct: 64 PKNXNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKV 122 Query: 136 VDSIAAALILQEVLDRISFLES 157 +D AA ILQ LD ++ S Sbjct: 123 IDKXAAVXILQGYLDSLNEGGS 144 |
gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical Protein Length = 138 | Back alignment and structure |
>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From Escherichia Coli Length = 138 | Back alignment and structure |
>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of Yqgf From Escherichia Coli, A Hypothetical Protein Length = 138 | Back alignment and structure |
>gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal Fragment) Length = 98 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
1nu0_A | 138 | Hypothetical protein YQGF; structural genomics, structu | 1e-31 | |
1vhx_A | 150 | Putative holliday junction resolvase; structural genomi | 4e-27 | |
1iv0_A | 98 | Hypothetical protein; rnaseh-like, YQGF, structural gen | 4e-21 |
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Length = 138 | Back alignment and structure |
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Score = 130 bits (329), Expect = 1e-31 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+A+ A P P + + T + + I+GLPL Sbjct: 4 TLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F + I + V DERL+TV A+ L + R KVD Sbjct: 64 NMDGTEQPLTARARKFANR-IHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVD 122 Query: 138 SIAAALILQEVLDR 151 S +A +IL+ +++ Sbjct: 123 SASAVIILESYMEQ 136 |
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Length = 150 | Back alignment and structure |
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>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Length = 98 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
1vhx_A | 150 | Putative holliday junction resolvase; structural genomi | 100.0 | |
1nu0_A | 138 | Hypothetical protein YQGF; structural genomics, structu | 100.0 | |
3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, | 97.61 | |
1iv0_A | 98 | Hypothetical protein; rnaseh-like, YQGF, structural gen | 99.97 | |
1hjr_A | 158 | Holliday junction resolvase (RUVC); site-specific recom | 97.75 | |
2gup_A | 292 | ROK family protein; sugar kinase, APC80695, sucrose, st | 96.07 | |
3htv_A | 310 | D-allose kinase, allokinase; NP_418508.1, structural ge | 95.26 | |
2ap1_A | 327 | Putative regulator protein; zinc binding protein, struc | 95.04 | |
3epq_A | 302 | Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, s | 94.81 | |
3eo3_A | 333 | Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-ace | 93.28 | |
1woq_A | 267 | Inorganic polyphosphate/ATP-glucomannokinase; transfera | 92.88 | |
2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix-turn- | 92.33 | |
3mcp_A | 366 | Glucokinase; structural genomics, joint center for stru | 92.21 | |
1z05_A | 429 | Transcriptional regulator, ROK family; structural genom | 90.43 | |
3lm2_A | 226 | Putative kinase; structural genomics, joint center for | 96.02 | |
1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucose bin | 92.63 | |
2q2r_A | 373 | Glucokinase 1, putative; ATPase hexose kinase family, t | 90.31 | |
1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide excha | 93.29 | |
3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP comple | 90.35 |
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 | Back alignment and structure |
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Probab=100.00 E-value=1.3e-43 Score=283.19 Aligned_cols=142 Identities=36% Similarity=0.532 Sum_probs=132.6 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCH--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 983999986887689996307651101210110477415--689899998651677589972135788888447999999 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~--~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f 93 (160) +.|+||||||+||||+|+||+.+.+|+|++++.+++... .+.+|.+++++|+|+.||||+|+++||+++++++.++.| T Consensus 2 ~MriLgiD~G~kriGvAisD~~~~~a~pl~~i~~~~~~~~~~~~~i~~ii~e~~i~~iViGlP~~~dg~~~~~~~~v~~f 81 (150) T 1vhx_A 2 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF 81 (150) T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH T ss_pred CCEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 86099995289979999956998833560113322345247999999999983999699857846688754889999999 Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99998404899779983671679999999986986445464378998999999999686456622 Q gi|254780976|r 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 (160) Q Consensus 94 ~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~~~~~ 158 (160) ++.|. +.+++||++|||||||++|++.+++.|++++++|+.+|++||++|||+|||+.+...|- T Consensus 82 ~~~l~-~~~~l~V~~~DEr~TS~~A~~~l~~~~~~~~k~k~~iD~~AA~iILq~~Ld~~n~g~~~ 145 (150) T 1vhx_A 82 AKVLE-TTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNEGGSH 145 (150) T ss_dssp HHHHH-HHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC---- T ss_pred HHHHC-CCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99626-58897568867886599999999976997000441476999999999999876376875 |
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A | Back alignment and structure |
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>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
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>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 | Back alignment and structure |
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>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 | Back alignment and structure |
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>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
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>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} | Back alignment and structure |
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>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
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>3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} | Back alignment and structure |
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>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
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>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} | Back alignment and structure |
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>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} | Back alignment and structure |
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>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
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>3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} | Back alignment and structure |
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>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
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>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} | Back alignment and structure |
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>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
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>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
160 | Holliday junction resolvase YqgF [Candidatus Liberibact | |||
d1nu0a_ | 138 | c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escheri | 1e-28 | |
d1vhxa_ | 140 | c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillu | 7e-26 | |
d1iv0a_ | 98 | c.55.3.8 (A:) Hypothetical protein, YqgF homologue {The | 3e-19 |
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Length = 138 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Putative Holliday junction resolvase RuvX domain: Hypothetical protein YqgF (RuvX) species: Escherichia coli [TaxId: 562] Score = 119 bits (300), Expect = 1e-28 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+A+ A P P + + T + + I+GLPL Sbjct: 4 TLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F + + R V DERL+TV A+ L + R KVD Sbjct: 64 NMDGTEQPLTARARKFANRIHGRF-GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVD 122 Query: 138 SIAAALILQEVLDR 151 S +A +IL+ +++ Sbjct: 123 SASAVIILESYMEQ 136 |
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Length = 140 | Back information, alignment and structure |
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>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Length = 98 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
d1vhxa_ | 140 | Hypothetical protein YrrK (RuvX) {Bacillus subtilis [Ta | 100.0 | |
d1nu0a_ | 138 | Hypothetical protein YqgF (RuvX) {Escherichia coli [Tax | 100.0 | |
d1iv0a_ | 98 | Hypothetical protein, YqgF homologue {Thermus thermophi | 99.97 | |
d3bzka5 | 149 | Transcriptional accessory factor Tex {Pseudomonas aerug | 98.49 | |
d1hjra_ | 158 | RuvC resolvase {Escherichia coli [TaxId: 562]} | 97.7 | |
d1xc3a1 | 118 | Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1 | 96.01 | |
d2gupa1 | 114 | Hypothetical protein SP2142 {Streptococcus pneumoniae [ | 96.0 | |
d2aa4a1 | 119 | N-acetylmannosamine kinase NanK {Escherichia coli [TaxI | 95.7 | |
d2ap1a2 | 117 | Putative regulator protein YcfX {Salmonella typhimurium | 94.73 | |
d1z6ra2 | 129 | Mlc protein {Escherichia coli [TaxId: 562]} | 93.77 | |
d1z05a3 | 128 | Transcriptional regulator VC2007 {Vibrio cholerae [TaxI | 93.75 | |
d1okja1 | 106 | Hypothetical protein YeaZ {Escherichia coli [TaxId: 562 | 93.38 | |
d2hoea3 | 128 | N-acetylglucosamine kinase {Thermotoga maritima [TaxId: | 90.4 | |
d1woqa1 | 129 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Art | 90.14 | |
d1q18a1 | 110 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 94.46 | |
d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 94.28 | |
d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acidaminoc | 90.8 | |
d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escherichia | 91.31 | |
d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bos tau | 91.0 |
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Putative Holliday junction resolvase RuvX domain: Hypothetical protein YrrK (RuvX) species: Bacillus subtilis [TaxId: 1423] Probab=100.00 E-value=2.6e-42 Score=273.94 Aligned_cols=138 Identities=36% Similarity=0.554 Sum_probs=128.9 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 98399998688768999630765110121011047741--5689899998651677589972135788888447999999 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~--~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f 93 (160) +.|+||||||+||||+|+||+.+.+|+|+.++.+++.. ..+.+|.+++++|+|+.||||+|++++|+++++++.++.| T Consensus 1 ~mriLgiD~G~kriGvAisd~~~~~a~pl~~i~~~~~~~~~~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~~~~~~~~f 80 (140) T d1vhxa_ 1 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF 80 (140) T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH T ss_pred CCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 95199998279989999945998822551668612566416899999999851656599835522478613677888999 Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999840489977998367167999999998698644546437899899999999968645 Q gi|254780976|r 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 (160) Q Consensus 94 ~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~ 154 (160) ++.|. +.+++||++|||||||++|++.+++.|++++++|+.+|++||++|||+|||++|. T Consensus 81 ~~~l~-~~~~i~V~~~DEr~TS~~A~~~l~~~~~~~~~~k~~iD~~AA~iILe~~L~~~n~ 140 (140) T d1vhxa_ 81 AKVLE-TTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNE 140 (140) T ss_dssp HHHHH-HHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHC-CCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 99834-6778557984144379999999997699700034147799999999999997468 |
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
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>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
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>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
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>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liber | ||
1nu0_A_ | 138 | (A:) Hypothetical protein YQGF; structural genomic | 1e-30 | |
1vhx_A_ | 150 | (A:) Putative holliday junction resolvase; structu | 1e-23 | |
3bzc_A_326-467 | 142 | (A:326-467) TEX; helix-turn-helix, helix-hairpin-h | 1e-14 | |
1iv0_A_ | 98 | (A:) Hypothetical protein; rnaseh-like, YQGF, stru | 4e-21 |
>1nu0_A (A:) Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli}Length = 138 | Back alignment and structure |
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Score = 126 bits (319), Expect = 1e-30 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLN +G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNXDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYXEQ 136 |
>1vhx_A (A:) Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis}Length = 150 | Back alignment and structure |
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>3bzc_A (A:326-467) TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa}Length = 142 | Back alignment and structure |
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>1iv0_A (A:) Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus}Length = 98 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 160 | Holliday junction resolvase YqgF [Candidatus Liberibact | ||
1nu0_A_ | 138 | Hypothetical protein YQGF; structural genomics, st | 100.0 | |
1vhx_A_ | 150 | Putative holliday junction resolvase; structural g | 100.0 | |
3bzc_A_326-467 | 142 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 99.92 | |
2hoe_A_86-211_358-380 | 149 | N-acetylglucosamine kinase; TM1224, structural gen | 96.01 | |
1iv0_A_ | 98 | Hypothetical protein; rnaseh-like, YQGF, structura | 99.96 | |
1hjr_A_ | 158 | Holliday junction resolvase (RUVC); site-specific | 97.97 | |
1sz2_A_1-122_314-332 | 141 | Glucokinase, glucose kinase; ATP-dependent, glucos | 96.98 | |
2gup_A_1-114_273-292 | 134 | ROK family protein; sugar kinase, APC80695, sucros | 96.7 | |
3eo3_A_1-144_315-333 | 163 | Bifunctional UDP-N-acetylglucosamine 2- epimerase/ | 96.31 | |
3lm2_A_1-99 | 99 | Putative kinase; structural genomics, joint center | 96.08 | |
2ch5_A_1-119_314-347 | 153 | NAGK protein; transferase, N-acetylglucosamine, gl | 96.01 | |
2e2o_A_1-105_275-299 | 130 | Hexokinase; acetate and sugar kinases, HSP70, acti | 95.92 | |
2ap1_A_1-128_313-327 | 143 | Putative regulator protein; zinc binding protein, | 95.67 | |
2kho_A_1-73_115-182_364-385 | 163 | Heat shock protein 70; molecular chaperone, HSP70, | 95.23 | |
3epq_A_1-120_276-302 | 147 | Putative fructokinase; SCRK, ADP binding, PSI2, MC | 94.3 | |
2aa4_A_1-119_275-289 | 134 | Mannac kinase, putative N-acetylmannosamine kinase | 94.02 | |
2qm1_A_1-131_308-326 | 150 | Glucokinase; alpha-beta structure, putative helix- | 93.69 | |
2q2r_A_1-154_358-373 | 170 | Glucokinase 1, putative; ATPase hexose kinase fami | 93.36 | |
1z6r_A_83-194 | 112 | MLC protein; transcriptional repressor, ROK family | 92.4 | |
1hux_A_1-95_239-270 | 127 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 90.66 | |
1jce_A_1-142_312-344 | 175 | ROD shape-determining protein MREB; MBL, actin, HS | 93.52 | |
1yuw_A_1-187_362-389 | 215 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 92.5 | |
2v7y_A_1-156_333-359 | 183 | Chaperone protein DNAK; HSP70, heat shock protein, | 90.93 | |
1dkg_D_1-73_115-182_364-383 | 161 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 91.85 |
>1nu0_A (A:) Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} | Back alignment and structure |
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Probab=100.00 E-value=3e-40 Score=263.84 Aligned_cols=136 Identities=29% Similarity=0.385 Sum_probs=131.5 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 98399998688768999630765110121011047741568989999865167758997213578888844799999999 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH 95 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~ 95 (160) ++|+||||||+||||+|+||+.+.+|+|++++.+++..+.+..|..++++|+++.||||+|++++|+++++++.++.|++ T Consensus 2 ~krilgiD~G~kriGiAi~d~~~~ia~p~~~i~~~~~~~~~~~l~~li~~~~~~~iViGlP~~~~g~~~~~a~~v~~f~~ 81 (138) T 1nu0_A 2 SGTLXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNXDGTEQPLTARARKFAN 81 (138) T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH T ss_pred CCCEEEEEECCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 97689999179979999947998740140789816772689999998642487389964434777875789999999999 Q ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998404899779983671679999999986986445464378998999999999686 Q gi|254780976|r 96 NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 (160) Q Consensus 96 ~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~ 152 (160) .|. +.+++||++||||+||++|++.+.+.+++++++++.+|++||++|||+|||+. T Consensus 82 ~L~-~~~~l~v~~vDEr~TT~~A~~~l~~~~~~~~~~k~~iD~~AA~~ILq~~L~~~ 137 (138) T 1nu0_A 82 RIH-GRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYXEQG 137 (138) T ss_dssp HHH-HHHCCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHTT T ss_pred HHH-HHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 999-86299969973664599999999973563210454364999999999999736 |
>1vhx_A (A:) Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} | Back alignment and structure |
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>3bzc_A (A:326-467) TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} | Back alignment and structure |
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>2hoe_A (A:86-211,A:358-380) N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} | Back alignment and structure |
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>1iv0_A (A:) Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} | Back alignment and structure |
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>1hjr_A (A:) Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} | Back alignment and structure |
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>1sz2_A (A:1-122,A:314-332) Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} | Back alignment and structure |
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>2gup_A (A:1-114,A:273-292) ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} | Back alignment and structure |
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>3eo3_A (A:1-144,A:315-333) Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} | Back alignment and structure |
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>3lm2_A (A:1-99) Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} | Back alignment and structure |
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>2ch5_A (A:1-119,A:314-347) NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} | Back alignment and structure |
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>2e2o_A (A:1-105,A:275-299) Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
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>2ap1_A (A:1-128,A:313-327) Putative regulator protein; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.90A {Salmonella typhimurium} | Back alignment and structure |
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>2kho_A (A:1-73,A:115-182,A:364-385) Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
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>2aa4_A (A:1-119,A:275-289) Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} | Back alignment and structure |
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>2qm1_A (A:1-131,A:308-326) Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} | Back alignment and structure |
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>2q2r_A (A:1-154,A:358-373) Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} | Back alignment and structure |
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>1z6r_A (A:83-194) MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} | Back alignment and structure |
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>1hux_A (A:1-95,A:239-270) Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} | Back alignment and structure |
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>1jce_A (A:1-142,A:312-344) ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} | Back alignment and structure |
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>1yuw_A (A:1-187,A:362-389) Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} | Back alignment and structure |
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>2v7y_A (A:1-156,A:333-359) Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
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>1dkg_D (D:1-73,D:115-182,D:364-383) Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} | Back alignment and structure |
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