HHsearch alignment for GI: 254780976 and conserved domain: PRK00039
>PRK00039 ruvC Holliday junction resolvase; Reviewed.
Probab=97.53 E-value=0.00031 Score=46.27 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCEEEEEEEECCCC--EECCCEEEECCCCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHH
Q ss_conf 983999986887689996307651--10121011047741-------568989999865167758997213578888844
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRR--FAHPRPFLVRKKVT-------QTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~--~a~Pl~~i~~~~~~-------~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~ 86 (160)
T Consensus 1 mMrILGIDPGl~~tG~gvie~~~~~~~~i~~G~I~t~~~~~~~~RL~~I~~~l~~li~~~~P~~~AiE~~F~~kN~~tai 80 (169)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEVEGRKLSYVASGVIRTTSDDDLPERLKQIFDGLSEVIDQYQPDEAAIEQVFVNKNPQSTL 80 (169)
T ss_pred CCEEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHH
T ss_conf 95899988366860899999769968999988995799999899999999999999996599656453788733688999
Q ss_pred -HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf -7999999999984048997799836716799999999
Q gi|254780976|r 87 -VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 (160)
Q Consensus 87 -~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~ 123 (160)
T Consensus 81 ~lgqARGvil-laa~~~~i~v~ey----sP~~VK~ait 113 (169)
T PRK00039 81 KLGQARGVAI-LAAARRGLPVAEY----TPLQVKKAVV 113 (169)
T ss_pred HHHHHHHHHH-HHHHHHCCCEEEE----CCCHHHHHHH
T ss_conf 9999999999-9999838975888----7074455331