HHsearch alignment for GI: 254780976 and conserved domain: PRK00039

>PRK00039 ruvC Holliday junction resolvase; Reviewed.
Probab=97.53  E-value=0.00031  Score=46.27  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             CCCEEEEECCCCEEEEEEEECCCC--EECCCEEEECCCCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHH
Q ss_conf             983999986887689996307651--10121011047741-------568989999865167758997213578888844
Q gi|254780976|r   16 NQPIASIDLGTKRIGLAISDPGRR--FAHPRPFLVRKKVT-------QTALELLSFITTENIAAFIIGLPLNMNGSEGPR   86 (160)
Q Consensus        16 ~~riLgiD~G~kriGiAisd~~~~--~a~Pl~~i~~~~~~-------~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~   86 (160)
T Consensus         1 mMrILGIDPGl~~tG~gvie~~~~~~~~i~~G~I~t~~~~~~~~RL~~I~~~l~~li~~~~P~~~AiE~~F~~kN~~tai   80 (169)
T PRK00039          1 MMRILGIDPGLRRTGYGVIEVEGRKLSYVASGVIRTTSDDDLPERLKQIFDGLSEVIDQYQPDEAAIEQVFVNKNPQSTL   80 (169)
T ss_pred             CCEEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHH
T ss_conf             95899988366860899999769968999988995799999899999999999999996599656453788733688999


Q ss_pred             -HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             -7999999999984048997799836716799999999
Q gi|254780976|r   87 -VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI  123 (160)
Q Consensus        87 -~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~  123 (160)
T Consensus        81 ~lgqARGvil-laa~~~~i~v~ey----sP~~VK~ait  113 (169)
T PRK00039         81 KLGQARGVAI-LAAARRGLPVAEY----TPLQVKKAVV  113 (169)
T ss_pred             HHHHHHHHHH-HHHHHHCCCEEEE----CCCHHHHHHH
T ss_conf             9999999999-9999838975888----7074455331