HHsearch alignment for GI: 254780976 and conserved domain: PRK00109
>PRK00109 Holliday junction resolvase-like protein; Reviewed.
Probab=100.00 E-value=1.5e-44 Score=290.13 Aligned_cols=140 Identities=37% Similarity=0.508 Sum_probs=133.3
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 89983999986887689996307651101210110477415689899998651677589972135788888447999999
Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93 (160)
Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f 93 (160)
T Consensus 1 ~~~griLgiD~G~kriGlAisD~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iViGlP~~~~g~~~~~~~~v~~F 80 (141)
T PRK00109 1 MMSGRILGFDVGTKRIGVAIGDPLGGTARPLETIKAQNGEPDWDALEKLLKEWQPDLLVVGLPLNMDGTEGPMTERARKF 80 (141)
T ss_pred CCCCCEEEEEECCCEEEEEEECCCCCEEECCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99888899981899799999469998474414377277068999999999983999899944799998844889999999
Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999840489977998367167999999998698644546437899899999999968645
Q gi|254780976|r 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 (160)
Q Consensus 94 ~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~ 154 (160)
T Consensus 81 ~~~L~-~~~~l~v~~~DEr~TS~~A~~~l~~~~~~~~~~k~~iD~~AA~iILq~~Ld~~~~ 140 (141)
T PRK00109 81 ANRLE-GRFGLPVELVDERLTTVEAERMLFEAGVSRAKRKGVVDSLAAVIILQSYLDSRPK 140 (141)
T ss_pred HHHHH-HHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999-9729987986243279999999997365332125226799999999999972767