HHsearch alignment for GI: 254780976 and conserved domain: pfam02075
>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=97.16 E-value=0.0047 Score=39.11 Aligned_cols=104 Identities=11% Similarity=0.094 Sum_probs=64.4
Q ss_pred EEEEECCCCEEEEEEEECCCCE--ECCCEEEECCC------CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH-HHHH
Q ss_conf 9999868876899963076511--01210110477------4156898999986516775899721357888884-4799
Q gi|254780976|r 19 IASIDLGTKRIGLAISDPGRRF--AHPRPFLVRKK------VTQTALELLSFITTENIAAFIIGLPLNMNGSEGP-RVHS 89 (160)
Q Consensus 19 iLgiD~G~kriGiAisd~~~~~--a~Pl~~i~~~~------~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~-~~~~ 89 (160)
T Consensus 1 ILGIDPGl~~tG~avi~~~~~~~~~v~~G~I~t~~~~~~~RL~~I~~~l~~ii~~~~P~~~aiE~~F~~~N~~ta~~lgq 80 (148)
T pfam02075 1 ILGIDPGSRVTGYGVIEHRGRQLSYLTSGVIRTQSDPLPERLLAIFDAVEEVLDTHQPNAVAIEQVFFAKNVDSALKLAQ 80 (148)
T ss_pred CEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCHHHHHHHHH
T ss_conf 98878886860799999759847999951597899887999999999999999964998674758777128699999999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99999999840489977998367167999999998698
Q gi|254780976|r 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 (160)
Q Consensus 90 v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~ 127 (160)
T Consensus 81 aRGvill-~~~~~~i~v~ey----~P~~VKk~itG~G~ 113 (148)
T pfam02075 81 ARGVAIL-AAAERGISVFEY----TPSQVKKAVTGNGS 113 (148)
T ss_pred HHHHHHH-HHHHHCCCEEEE----CHHHHHHHHHCCCC
T ss_conf 9999999-999807980578----88998888737985