HHsearch alignment for GI: 254780976 and conserved domain: smart00732

>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=99.95  E-value=1.5e-27  Score=187.44  Aligned_cols=99  Identities=33%  Similarity=0.525  Sum_probs=92.7

Q ss_pred             CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             83999986887689996307651101210110477415689899998651677589972135788888447999999999
Q gi|254780976|r   17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN   96 (160)
Q Consensus        17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~   96 (160)
T Consensus         1 krvLgiD~G~kriG~Ai~D~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~~~~iviG~P~~~~g~~~~~~~--~~f~~~   78 (99)
T smart00732        1 KRVLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE--EAFAEL   78 (99)
T ss_pred             CCEEEEEECCCCEEEEEEECCCCEECCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHH--HHHHHH
T ss_conf             979999217896999999899973213189985982699999999999849988997475248998199999--999999


Q ss_pred             HHHHCCCCCEEEECCCCCHHHH
Q ss_conf             9840489977998367167999
Q gi|254780976|r   97 MIDRKVYVPFVFWDERLTTVSA  118 (160)
Q Consensus        97 L~~~~~~l~v~~~DEr~TS~~A  118 (160)
T Consensus        79 l-~~~~~i~v~~~DEr~tS~~A   99 (99)
T smart00732       79 L-KERFNLPVVLVDERLATVYA   99 (99)
T ss_pred             H-HHCCCCCEEEEECCCCCCCC
T ss_conf             8-51789988999589724249