HHsearch alignment for GI: 254780976 and conserved domain: smart00732
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=99.95 E-value=1.5e-27 Score=187.44 Aligned_cols=99 Identities=33% Similarity=0.525 Sum_probs=92.7
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 83999986887689996307651101210110477415689899998651677589972135788888447999999999
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~ 96 (160)
T Consensus 1 krvLgiD~G~kriG~Ai~D~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~~~~iviG~P~~~~g~~~~~~~--~~f~~~ 78 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE--EAFAEL 78 (99)
T ss_pred CCEEEEEECCCCEEEEEEECCCCEECCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHH--HHHHHH
T ss_conf 979999217896999999899973213189985982699999999999849988997475248998199999--999999
Q ss_pred HHHHCCCCCEEEECCCCCHHHH
Q ss_conf 9840489977998367167999
Q gi|254780976|r 97 MIDRKVYVPFVFWDERLTTVSA 118 (160)
Q Consensus 97 L~~~~~~l~v~~~DEr~TS~~A 118 (160)
T Consensus 79 l-~~~~~i~v~~~DEr~tS~~A 99 (99)
T smart00732 79 L-KERFNLPVVLVDERLATVYA 99 (99)
T ss_pred H-HHCCCCCEEEEECCCCCCCC
T ss_conf 8-51789988999589724249