HHsearch alignment of GI: 254780976 and MMDB domain: 3bzc_A_326-467
>3bzc_A (A:326-467) TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa}
Probab=99.92 E-value=1.2e-24 Score=169.43 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=109.6
Q ss_pred CCCCEEEEECCCC-EEEEEEEECCCCEECCCEEE---ECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 9983999986887-68999630765110121011---0477415689899998651677589972135788888447999
Q gi|254780976|r 15 PNQPIASIDLGTK-RIGLAISDPGRRFAHPRPFL---VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90 (160)
Q Consensus 15 ~~~riLgiD~G~k-riGiAisd~~~~~a~Pl~~i---~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v 90 (160)
.+.||||||||+| |||+|++|+.+.++.|..++ ...+.+.++..|.+++++|+|..+||| +|+++++++.+
T Consensus 2 ~~~rilaiD~G~k~riG~A~~d~~g~i~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~iViG-----~g~~~~~~~~~ 76 (142)
T 3bzc_A 2 GPRATLGLDPGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG-----NGTASRETDKL 76 (142)
T ss_dssp CSCCEEEEECCSSSCEEEEEECTTSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE-----SSTTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHH
T ss_conf 9971677679986625999998999878867875689544499999999999998199289988-----98135899999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998404899779983671679999999986986445464378998999999999686456
Q gi|254780976|r 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 (160)
Q Consensus 91 ~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~~ 155 (160)
+.|+..+ .+.+++||++|||++||.+|.+....... ++...|..+|+.|++.|+|.++..
T Consensus 77 ~~~~~~l-~~~~~i~V~~vDE~~st~~a~~~~~~~~~----~~~~~d~~~Av~i~~~l~d~L~e~ 136 (142)
T 3bzc_A 77 AGELIKK-YPGMKLTKIMVSEAGASVYSASELAAKEF----PELDVSLRGAVSIARRLQDPLAEL 136 (142)
T ss_dssp HHHHHHH-CGGGCCEEEEECCHHHHHHHHSHHHHHHC----TTSCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHH-CCCCCCEEEEECCHHHHHHHCCHHHHHHC----CCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999986-76788628993332478876188988557----578830778888888603969999