HHsearch results for GI: 254780976 and protein with PDBid: 3bzc_A
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.61 E-value=0.0011 Score=41.62 Aligned_cols=134 Identities=18% Similarity=0.283 Sum_probs=82.4
Q ss_pred HHHHHHHCCCC-CCEEEEECCCC-EEEEEEEECCCCEECCCEEE----ECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 89999835899-83999986887-68999630765110121011----04774156898999986516775899721357
Q gi|254780976|r 6 IEDLVKSLKPN-QPIASIDLGTK-RIGLAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 (160)
Q Consensus 6 ~~~~~~~~~~~-~riLgiD~G~k-riGiAisd~~~~~a~Pl~~i----~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~ 79 (160)
+.+++..-|-+ .++||+|.|.+ -|-+|+-|..+.+--- .++ ++.........|.+++..++|+.|+||
T Consensus 317 L~~lLl~aP~~~~~vlg~dPg~r~g~k~a~vD~~G~vld~-~~iyp~~~~~~~~~a~~~l~~li~~~~~~vIaIG----- 390 (785)
T 3bzc_A 317 LHDLLLAAPAGPRATLGLDPGLRTGVKVAVVDATGKLLDT-ATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG----- 390 (785)
T ss_dssp HHHHHTSCCCCSCCEEEEECCSSSCEEEEEECTTSCEEEE-EEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE-----
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEE-EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-----
T ss_conf 9999747888898235547898773599999899987876-7974689742359999999999998299689976-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCCHH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888884479999999999840--4899779983671679-----999999986986445464378998999999999686
Q gi|254780976|r 80 NGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTV-----SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 (160)
Q Consensus 80 ~g~~~~~~~~v~~f~~~L~~~--~~~l~v~~~DEr~TS~-----~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~ 152 (160)
+|+ .+..+..|...++.. ...+++.++||..-|. .|.+.+.+..+..+ -++|=+--||+=|.++
T Consensus 391 ngt---asrete~~v~~li~~~~~~~v~~~~V~E~gAsvYsaS~~A~~EfPdld~~~R------~AVSIaRrlQDPLaEl 461 (785)
T 3bzc_A 391 NGT---ASRETDKLAGELIKKYPGMKLTKIMVSEAGASVYSASELAAKEFPELDVSLR------GAVSIARRLQDPLAEL 461 (785)
T ss_dssp SST---THHHHHHHHHHHHHHCGGGCCEEEEECCHHHHHHHHSHHHHHHCTTSCHHHH------HHHHHHHHHHCHHHHH
T ss_pred CCH---HHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCHHHHHHCCCCCCCHH------HHHHHHHHHCCHHHHH
T ss_conf 863---8789999999999856577864898332026776438998855726880156------8887787630869999
Q ss_pred HH
Q ss_conf 45
Q gi|254780976|r 153 SF 154 (160)
Q Consensus 153 ~~ 154 (160)
..
T Consensus 462 vk 463 (785)
T 3bzc_A 462 VK 463 (785)
T ss_dssp TT
T ss_pred HH
T ss_conf 72