HHSEARCH alignment of GI: 254780976 and SCOP domain: d1nu0a_

Alignment
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=3.8e-43  Score=278.97  Aligned_cols=136  Identities=29%  Similarity=0.404  Sum_probs=130.6

Q ss_pred             CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             98399998688768999630765110121011047741568989999865167758997213578888844799999999
Q gi|254780976|r   16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH   95 (160)
Q Consensus        16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~   95 (160)
                      .+|+||||||+||||+|+||+.+.+|+|++++.+++..+++.+|..++++|+|+.||||+|++++|+++++++.++.|++
T Consensus         2 ~griLgiD~G~kriGvAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~~~~v~~f~~   81 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN   81 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             97489999389989999937987742542555503640569999987540476389961432235555799999999999


Q ss_pred             HHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998404899779983671679999999986986445464378998999999999686
Q gi|254780976|r   96 NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI  152 (160)
Q Consensus        96 ~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~  152 (160)
                      +|.. .+++||++|||||||++|++.+++.|.+++++++.+|++||++|||+|||+.
T Consensus        82 ~L~~-~~~i~V~~~DEr~TS~eA~~~l~~~~~~~~~~k~~iD~~AA~lILq~~L~~~  137 (138)
T d1nu0a_          82 RIHG-RFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQG  137 (138)
T ss_dssp             HHHH-HHCCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHTT
T ss_pred             HHHH-CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9854-5498769971532499999999973563210465465999999999999736


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]