BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase
YqgF [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 160

 Score =  323 bits (829), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL
Sbjct: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ
Sbjct: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG
Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160


>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 167

 Score =  288 bits (737), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/159 (88%), Positives = 152/159 (95%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL
Sbjct: 1   MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ
Sbjct: 61  SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+
Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159


>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase
 gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 163

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  L+
Sbjct: 1   MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771]
          Length = 166

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 3   MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 63  DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161


>gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
          Length = 164

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42]
 gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase
 gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN
           42]
          Length = 164

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PF++WDERL+TV+A++
Sbjct: 61  DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +LI+M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159


>gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652]
 gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase
 gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652]
          Length = 164

 Score =  191 bits (484), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +A F+IGLP+NM+GS GPRV +TRAFV NM + K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EEKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
 gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
 gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
          Length = 164

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L IEDL   L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A  LL
Sbjct: 1   MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E +AAF+IGLP+NM+GS GPRV +TRAFV +M D K  +PFV+WDERL+TV+A++
Sbjct: 61  AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMAD-KTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154


>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
 gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
 gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
          Length = 158

 Score =  187 bits (474), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR  + R K T+ A  LL
Sbjct: 1   MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E +AAF+IGLP+NM+GS GPRV +TRAFV  M + K  +PFV+WDERL+TV+A +
Sbjct: 61  AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAE-KTDIPFVYWDERLSTVAATR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L S+
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157


>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 164

 Score =  187 bits (474), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR  + R K T  A  LL
Sbjct: 1   MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
 gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
          Length = 159

 Score =  186 bits (473), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD  RRFA PRP + R K T+ A  LL
Sbjct: 1   MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E ++AFIIGLP+NM+GS GPR  +TRAFV  M   K  +PF+FWDERL+TV+A++
Sbjct: 61  AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +L++M+VSR KR +++DS AA+ ILQ  LDR+S L  + G
Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159


>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
 gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 164

 Score =  186 bits (472), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58]
 gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
 gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 159

 Score =  184 bits (467), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 116/155 (74%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD  RRFA PRP + R K TQ A  LL
Sbjct: 1   MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E +AAF+IGLP+NM+GS GPR  +TRAFV  M   K  +PF++WDERL+TV+A++
Sbjct: 61  AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154


>gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021]
 gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
 gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
 gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
          Length = 165

 Score =  184 bits (466), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SF   E IAAFIIGLP+NM+GSEGPR  +TRAFV NM + K  +PFV WDERL+TV+A++
Sbjct: 61  SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNMGE-KTDIPFVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LI+M+VSRKKR +++DS AA+ ILQ  LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASL 154


>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
 gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
          Length = 162

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ +EDL   L P Q IA +DLGTK IGLA+SD  R  A PRP + R+K T  A++LL
Sbjct: 1   MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + + A +IGLP+NM+GSEGPRV +TRAFV NMI+ K  +PFVFWDERL+TV+A++
Sbjct: 61  TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIE-KTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI+M+VSRKKR +++DS AA+ ILQ  LDR+  L ++
Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAA 157


>gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
 gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
          Length = 165

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SF   E IAAFIIGLP+NM+GSEGPR  +TRAFV  M + K  +PFV WDERL+TV+A++
Sbjct: 61  SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTMGE-KTDIPFVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LI+M+VSRKKR +++DS AA+ ILQ  LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASL 154


>gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894]
          Length = 144

 Score =  175 bits (444), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145
            L++M+VSR KR +++DS AA+ IL
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144


>gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae
           WSM419]
 gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase
 gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419]
          Length = 165

 Score =  174 bits (442), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 113/155 (72%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +AAF+IGLP+NM+GSEGPR  +TRAFV  M +R   +P V WDERL+TV+A++
Sbjct: 61  FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LI+M+VSRKKR  ++DS AA+ ILQ  LDR++ L
Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALL 154


>gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1]
 gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase
 gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
          Length = 160

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS++ IE+L K+    +P+A +DLGTK IG+AISD G  FA PR +L RKK  + A  LL
Sbjct: 1   MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             ++ EN    I+GLP+NM+GSEGPR  STRAFV N+      +PF FWDERL+TV+A++
Sbjct: 61  HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNL-QPLTKLPFAFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            LI+M+VSR KR Q++DS AAA ILQ  LDR+  L +  G
Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159


>gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C]
          Length = 163

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I ++   L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A IIGLPLNMNGS GPRV +T+ FV NM      +PFVFWDERL+T++A++
Sbjct: 61  QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMATY-TEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           +L++M++SR KR  ++DS AAA ILQ  LDRI  L+S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157


>gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498]
          Length = 163

 Score =  169 bits (429), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I +++  L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A IIGLPLNMNGS GPRV +T+ FV NM      +PFVFWDERL+T++A++
Sbjct: 61  QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           +L++M++SR KR  ++DS AAA ILQ  LDRI  L S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157


>gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476]
 gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase
 gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476]
          Length = 156

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 112/159 (70%), Gaps = 5/159 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I +++  L P Q IA +DLGTK IG+AISD G   ++PRP L RKK T+ A  L+
Sbjct: 1   MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSA 118
                EN+   +IGLPLNMNGS G RV +TRAFV NM   K Y  +PFVFWDERL+T++A
Sbjct: 61  KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM---KAYTKIPFVFWDERLSTIAA 117

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           ++ L++MNVSR KR +++DS AAA ILQ  L+RI  L S
Sbjct: 118 ERSLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156


>gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
 gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
          Length = 159

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 110/162 (67%), Gaps = 5/162 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M ++ I +++  L P Q IA +DLGTK IG+AISD G   ++PRP L RKK T+ A  L+
Sbjct: 1   MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSA 118
                EN+   IIGLPLNMNGS G RV +TRAFV NM   K Y  +PFVFWDERL+T++A
Sbjct: 61  KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM---KAYTKIPFVFWDERLSTIAA 117

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ++ L++MNVSR KR  ++DS AAA ILQ  L+RI      +G
Sbjct: 118 ERSLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159


>gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3]
          Length = 163

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I ++   L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A I+GLP+NMNGS GPRV +T+ FV NM      +PF+FWDERL+T++A++
Sbjct: 61  EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNMAT-YTKIPFIFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
             ++MN+SR KR  ++DS AAA ILQ  LDRI  L+S+
Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157


>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
 gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
 gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
          Length = 159

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I +++  L P Q IA +DLG K IG+A+SD G  F++PR  L RKK+T  A  L+
Sbjct: 1   MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLPLNMNGS GPR  +TR FV+NM +    +PFVFWDERL+T++A++
Sbjct: 61  QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR  ++DS AAA ILQ  L+RI  L   +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159


>gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2]
          Length = 162

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR +++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMM 154


>gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13]
 gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 162

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR +++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMM 154


>gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330]
 gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365]
 gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445]
 gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC
           23457]
 gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str.
           513]
 gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str.
           686]
 gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
           B2/94]
 gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
 gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
           M292/94/1]
 gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33]
 gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3
           str. Ether]
 gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1]
 gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94]
 gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
 gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99]
 gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
           str. 40]
 gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
 gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
 gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase
 gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase
 gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase
 gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase
 gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330]
 gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365]
 gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445]
 gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
 gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
 gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
           str. 40]
 gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
 gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
 gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
 gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
 gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis
           M5-90]
          Length = 162

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154


>gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1
           str. 9-941]
 gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
 gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6
           str. 870]
 gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3
           str. Tulya]
 gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4
           str. 292]
 gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9
           str. C68]
 gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
           8038]
 gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
 gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
 gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
           Tulya]
 gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
 gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase
 gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase
 gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase
 gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1
           str. 9-941]
 gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold
           containing [Brucella melitensis biovar Abortus 2308]
 gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
 gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
           8038]
 gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
 gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
 gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
           Tulya]
 gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
          Length = 162

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154


>gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
 gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
          Length = 165

 Score =  160 bits (404), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 116/162 (71%), Gaps = 5/162 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS++ IE+  ++LK  +P+A +DLGTK IG+A+SD   RFA+PR  L RKK TQ A  L 
Sbjct: 1   MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSA 118
           + +  + ++A ++GLPLNM+GS GPR  +T+AF  N   +D +   P + WDERL+TV+A
Sbjct: 61  AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNYAALDER---PILLWDERLSTVAA 117

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ++ L+D+++SRKKR +++DS AAA+ILQ VLDR++ L    G
Sbjct: 118 ERNLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159


>gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
           WSM2075]
 gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
           WSM2075]
          Length = 168

 Score =  159 bits (403), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ IE L   L   + +A +DLG K IG+A+SD G  FAHPRP ++R+K +  A  LL
Sbjct: 1   MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  EN  A +IGLP+NM+GSEGPR   +RAFV NM  +   +PFVFWDERL+TV+A++
Sbjct: 61  ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI+M+ SR KR  K+DS AAA ILQ VLDR+  L +S
Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157


>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
 gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
 gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
          Length = 159

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I +++  L P Q IA +DLGTK IG+A+SD G  F++PR  L R+K T  A  L+
Sbjct: 1   MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLPLNMNGS GPR  +TR FV NM +    +PFVFWDERL+T++A++
Sbjct: 61  KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR  ++DS AAA ILQ  L+RI  L   +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159


>gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
           str. 16M]
 gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840]
 gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
 gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase
 gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase
 gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840]
 gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
 gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 162

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+ ++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154


>gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1]
 gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1]
 gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 162

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 106/155 (68%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FA+PRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154


>gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73]
 gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73]
          Length = 164

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I ++   L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A +IGLP+NM+GS GPRV +T+ FV NM      +PFVFWDERL+T +A++
Sbjct: 61  KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNMA-MYTKIPFVFWDERLSTTAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L+++++SR KR  ++DS AAA ILQ  LDRI  L S+
Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157


>gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
 gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
          Length = 165

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ IE++   L+P + IA +DLGTK IGLA+SD G  FAHPRP + R K +  A  LL
Sbjct: 1   MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +  + +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR +++DS AAA ILQ  LDR+  +  S
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157


>gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis
           KC583]
 gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase
 gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis
           KC583]
          Length = 161

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I+ ++  L   Q IA +DLGTK IG+AISD    F++PRP + RKK T  AL+L+
Sbjct: 1   MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLP+NM+GS GPRV +TR FV N I     +PF+FWDERL+T++AQ+
Sbjct: 61  KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSN-IAMYTKIPFIFWDERLSTIAAQR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++++VSR KR  ++DS AAA ILQ  LDRI  L  +
Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157


>gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 156

 Score =  157 bits (396), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ +E+   ++   + IA +DLGTK IGLA+SD G+RFA PR  L R K T  A  L+
Sbjct: 1   MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  +NI   +IGLPLNM+GSEGPR  +TRAF+ N   R    P + WDERL+TV+A++
Sbjct: 61  AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRNY-SRFDERPVLLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ +VSRKKR +++DS AA+ ILQ  LDR+S L S
Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156


>gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 168

 Score =  156 bits (394), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I+ IE+L   L   + +A +DLG K IG+A+SD    FAHPRP ++R+K +  A  LL
Sbjct: 1   MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  EN  A +IGLP+NM+GSEGPR   +RAFV NM  +   +PFV WDERL+TV+A++
Sbjct: 61  ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QMSDLPFVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI+M+ SR+KR  K+DS AAA ILQ VLDR+  L +S
Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHAS 157


>gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1]
          Length = 159

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I ++   L P Q IA +DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   +IGLP+NM+GS GPRV +TR FV NM      +PFVFWDERL+T++AQ+
Sbjct: 61  QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR  ++DS AAA ILQ VLDRI  L  ++G
Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159


>gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
 gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
          Length = 162

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+N +G+ GPRV +TRAFV  M      + FVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154


>gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
 gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase
 gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
          Length = 165

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ IE++   L+  Q IA +DLGTK IGLA+SD G  FAHPRP + R K +  A  LL
Sbjct: 1   MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +  + +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR  ++DS AA+ ILQ  LDR+  +  S
Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRS 157


>gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099]
 gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase
 gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099]
          Length = 166

 Score =  153 bits (386), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 1/146 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L   + +A +DLG K IG+A+SD G  FAHPRP ++R+K +  A  LL+ +  EN+ A  
Sbjct: 5   LADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVA 64

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP+NM+GSEGPR   +RAFV NM  +   +PFVFWDERL+TV+A++ LI+M+ SR KR
Sbjct: 65  IGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAERTLIEMDFSRAKR 123

Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
             K+DS AAA ILQ VLDR+  L+S+
Sbjct: 124 AGKIDSAAAAFILQGVLDRLQSLDSA 149


>gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56]
          Length = 121

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  L+
Sbjct: 1   MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 IL 122
            L
Sbjct: 120 TL 121


>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
 gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
          Length = 160

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 4   LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
           L ++D +  L PN  +  +DLGTK IGLA+SD GR  A P   + RKK TQ A +LL   
Sbjct: 7   LSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLDIC 66

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
             + ++  ++GLPLNM+GSEGPR  +TRAF  N+  +K  +P  +WDERL+T +  + L+
Sbjct: 67  AKQEVSGLVLGLPLNMDGSEGPRAQATRAFCRNL-SQKTELPITYWDERLSTAAVTRTLL 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + + SR KR + VD +AAA ILQ  LDR+  + +S
Sbjct: 126 EADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160


>gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum
           SL003B-26A1]
 gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
           gilvum SL003B-26A1]
          Length = 166

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 4   LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
           L +ED V +L P   +  +DLGT+ IGLA+SD GR  A P   + R+K T  A +LL   
Sbjct: 7   LSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLKIC 66

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
               +   ++GLPLNM+GSEGPRV +TRAF  N+ + K  +P  +WDERL+T +  + LI
Sbjct: 67  AEHRVGGLVLGLPLNMDGSEGPRVQATRAFARNLAE-KTDLPITYWDERLSTAAVTRTLI 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           + + SR +R + VD +AAA ILQ  LDR+ +L  S+
Sbjct: 126 EADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161


>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
           BL2]
 gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
 gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
          Length = 161

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + DL   + P Q +  IDLGTK IGLA+SD  RR A P   + R K ++ A+ L+  
Sbjct: 5   ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
               +  A IIGLPLNM+GS+GPRV +TRAFV ++    V  PFV+WDERL+T +  + L
Sbjct: 65  AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVRSL-SALVSKPFVYWDERLSTAAVTRSL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           ID +VSR KR + VD +AAA ILQ VLDR+  +E+
Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEA 158


>gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
           Y25]
 gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
           Y25]
          Length = 156

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +ED   +L P + +  +DLGT  IG+A+SD     A P   + RKK +  A  LL  I  
Sbjct: 6   VEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALLKIIAA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            NIA  ++GLPLNM+GSEGPR  STRAF  N+  R   +P V+WDERL+TV+A++ L++ 
Sbjct: 66  RNIAGIVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTDLPIVYWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + SRK+R + +D +AA  ILQ VLDR+  L
Sbjct: 125 DTSRKRRDEVIDHVAAGFILQGVLDRLRHL 154


>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
 gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
          Length = 165

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 1/155 (0%)

Query: 4   LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
           L +ED   +L  +  +  IDLGTK IGLA++D GR+ A P   + RKK TQ    LL   
Sbjct: 7   LSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLDLC 66

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
               +   +IGLPLNM+G+EGPR  +TRAFV N+  +K  +P  +WDERL+T +  + LI
Sbjct: 67  HEHGVFGLVIGLPLNMDGTEGPRCQATRAFVRNLA-QKTEIPITYWDERLSTAAVTRTLI 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + + SR +R + VD +AA  ILQ  LDR+++  +S
Sbjct: 126 EADRSRARRAELVDKMAATYILQGFLDRVNYGGTS 160


>gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
 gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
          Length = 162

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 4   LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
           L +ED V ++     +  +DLGTK IGLA+SD G   A P   + RKK T  A +LL+  
Sbjct: 7   LSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLTIC 66

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
             + +   ++GLPLNM+GSEGPR  +TRAFV N+  +K  +P  +WDERL+T +  + L+
Sbjct: 67  AKQGVGGIVLGLPLNMDGSEGPRAQATRAFVRNL-SQKTDLPITYWDERLSTAAVTRTLL 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + + SR KR   VD +AAA ILQ  LDR+ F+    G
Sbjct: 126 EADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162


>gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
           DFL-11]
 gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
           DFL-11]
          Length = 161

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%)

Query: 4   LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
           L +ED + ++     +  +DLGTK IGLA+SD GR  A P   + RKK T  A +LL   
Sbjct: 7   LSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLKIC 66

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
             + +   ++GLPLNM+G+EGPRV +TRAF  N+   K  +P  FWDERL+T +  + L+
Sbjct: 67  NEQGVGGLVLGLPLNMDGTEGPRVQATRAFTRNLAP-KTDLPMTFWDERLSTAAVTRTLL 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + + SR KR + VD +AAA ILQ  LDR+ F+
Sbjct: 126 EADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157


>gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 307]
 gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 307]
          Length = 162

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 1/145 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D   +L P  P+A +DLGTK IG+A+SD G   A P   + R K    AL L    +   
Sbjct: 8   DFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLFEITSHRA 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           IA  ++GLP NM+GSEGPR  STRAF  N+  R   +P  +WDERL+TV+A++ L++ + 
Sbjct: 68  IAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLTDLPITYWDERLSTVAAERALLEADT 126

Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
           SRK+R + +D++AA++ILQ +LDR+
Sbjct: 127 SRKRRAEVIDNVAASIILQGMLDRL 151


>gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           WS8N]
 gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase
 gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase
 gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
           17029]
 gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           WS8N]
          Length = 160

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IED + SL     +A +DLGTK +G+A+SD  RR A P   + R K T+ A +L +    
Sbjct: 6   IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIAAE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N++ + + +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + SRK+R + +D +AA  ILQ VLDR+ +L    G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159


>gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           KD131]
 gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase
 gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
          Length = 160

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IED + SL     +A +DLGTK +G+A+SD  RR A P   + R K T+ A +L +    
Sbjct: 6   IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIADE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N++ + + +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + SRK+R + +D +AA  ILQ VLDR+ +L    G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159


>gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase
 gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus]
          Length = 159

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           ++D   +L     +A +DLGTK IG+A+SD  R  A P   + R+K T    +L+  +  
Sbjct: 6   MDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLMKTVAE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             IA F++GLP+NM+GSEGPR  STRAF  N+ ++   +P  FWDERL+TV+A++ +++ 
Sbjct: 66  RQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAERAMLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ++SRK+R + VD +AA  ILQ  LDR++ L  + G
Sbjct: 125 DLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159


>gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
 gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
          Length = 158

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 99/151 (65%), Gaps = 1/151 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ED    L  +  +A +DLGT  IG+A+SD  R  A P   + R+K T  A  L    T  
Sbjct: 7   EDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLFEITTHR 66

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            IA  ++GLP NM+GSEGPR  +TRAF  N +++   +P  FWDERL+TV+A++ +++ +
Sbjct: 67  MIAGLVLGLPRNMDGSEGPRCQATRAFARN-LEKLTPLPITFWDERLSTVAAERAMLEAD 125

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           +SRK+R +++D+IAA+ ILQ +LDR+  LE+
Sbjct: 126 MSRKRRAERIDNIAASYILQGMLDRLRHLEA 156


>gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
 gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
 gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
          Length = 158

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +E   ++L     +A +DLGTK IG+A+SD  R  A P   + R K T  A  LL  +  
Sbjct: 6   VETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALLKIVQD 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N+ +R   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RALVGLVLGLPRNMDGSEGPRAQSTRAFARNL-ERLTPLPITFWDERLSTVAAERALLEG 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + SRK+R + +D +AA  ILQ  LDR+ FL
Sbjct: 125 DTSRKRRAEVIDQVAAGYILQGALDRLRFL 154


>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
 gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
          Length = 158

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +L    PI  +DLGTK IG+AISD     A P   + RKK +  A  LL   T   +A  
Sbjct: 12  TLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLLEIATQREVAGL 71

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP NM+GSEGPR  STRAF  N+ +    +P  FWDERL+TV+A++ L++ + SRK+
Sbjct: 72  VLGLPRNMDGSEGPRCQSTRAFARNL-EPLTELPITFWDERLSTVAAERALLEADTSRKR 130

Query: 132 RIQKVDSIAAALILQEVLDRISFLESSK 159
           R + +D++AA+ ILQ VLDR++ + +++
Sbjct: 131 RAEVIDNVAASYILQGVLDRLTHMRAAQ 158


>gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
 gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
          Length = 160

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 1   MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
           MS+L  IE+   +L   + +A +D G K IG+A+SD  R  A P   + R K T  A  L
Sbjct: 1   MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              IT   IA  I+GLP NM+GSEGPR  +TRAF  N+  R   +P  FWDERL+TV+A 
Sbjct: 61  AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFARNL-SRLTPLPIGFWDERLSTVAAT 119

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + L++ + SRK+R + +D +AA  ILQ VLDR++ +    G
Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160


>gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
           17100]
          Length = 156

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           + DL+  LK ++ +  +D+GTK +GLA+SD  R+ A P   + R K T  A++LL+    
Sbjct: 8   LPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVKLLAHCKA 67

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           + +   ++GLP+N++G+EGPR  STRAFV ++      +P  FWDERL+T +A+++L++ 
Sbjct: 68  QGVGGLVVGLPVNLDGTEGPRAQSTRAFVRSL-GALTDMPMAFWDERLSTAAAERVLLEA 126

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
           + SRK+R + +D +AAA ILQ  LDR+++
Sbjct: 127 DASRKRRAEVIDKMAAAYILQGALDRVNY 155


>gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
 gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
          Length = 159

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           ++D   +L     +A +DLGTK IG+A+SD  R  A P   + R+K +    +L+  +  
Sbjct: 6   MDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLMKTVAE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             IA F++GLP+NM+GSEGPR  STRAF  N+ ++   +P  FWDERL+TV+A++ +++ 
Sbjct: 66  RQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAERAMLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ++SRK+R + VD +AA  ILQ  LDR++ L  + G
Sbjct: 125 DLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159


>gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
 gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
          Length = 161

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I D   +L P Q +  +DLG K IG+A++D     A P   + RKK    A  L   I  
Sbjct: 6   ITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLTQIIAD 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   I+GLP NM+GSEGPR  STRAF  N  D+ V +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEKALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + SRK+R + +D +AA+ ILQ VLDR+S L +  G
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159


>gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
           bacterium KLH11]
 gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
           bacterium KLH11]
          Length = 154

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 1/151 (0%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
           + ED   +L P   +  +DLG K IG+A+SD  R  A P   + RKK T  +  L+  +T
Sbjct: 5   VFEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLIEIVT 64

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
              I   ++GLP NM+GSEGPR  STRAF  N+  R   V   FWDERL+TV+A++ L++
Sbjct: 65  DREIGGIVLGLPRNMDGSEGPRCQSTRAFARNLT-RLTEVQIGFWDERLSTVAAEKALLE 123

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            + +RK+R Q +D +AA  ILQ  LDR+ FL
Sbjct: 124 ADTTRKRRGQVIDHVAAGYILQGALDRLRFL 154


>gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
 gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
          Length = 160

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I     +L   + I  +DLGTK IG+A+SD     A P   + R K T+ A  L   +T 
Sbjct: 6   IAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLFDIMTG 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            ++   I+GLP NM+GSEGPR  STRAF  N+  R    P  +WDERL+TV+A++ L++ 
Sbjct: 66  RDVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTDAPIGYWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           + +RK+R+Q +D+IAAA ILQ VLDR+S + +
Sbjct: 125 DATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156


>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 157

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE+    L P + +A +DLGTK IG+A+SD     A P   + RKK TQ A  L+  +  
Sbjct: 6   IEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLVEILRQ 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             IA  ++GLP NM+GSEGPR  STRAF  N   +    P  FWDERL+TV+A++ L++ 
Sbjct: 66  REIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SR+KR + +D +AA+ ILQ VLDR+  L S+
Sbjct: 125 DTSRRKRAELIDHVAASYILQGVLDRLRNLRSA 157


>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3]
 gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
 gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3]
          Length = 154

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +E+   +L P   +A +DLG K IG+A+SD  R  A P   + RKK    A  LL+ +  
Sbjct: 6   VEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALLAIVEQ 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             IA  ++GLP NM+GSEGPR  STRAF  N+  R   V   FWDERL+TV+A++ L++ 
Sbjct: 66  REIAGIVLGLPRNMDGSEGPRCQSTRAFARNL-SRLTEVAITFWDERLSTVAAEKALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + +RK+R + +D +AAA ILQ  LDR+  L
Sbjct: 125 DTTRKRRSEVIDHVAAAYILQGALDRLRNL 154


>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
 gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
          Length = 160

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I     +L   + I  +DLGTK IG+A+SD     A P   + R K T  A  LL  +  
Sbjct: 6   IAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLLQIVAG 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   I+GLP NM+GSEGPR  STRAF  N+  R   VP  +WDERL+TV+A++ L++ 
Sbjct: 66  REVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTEVPIGYWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           + +RK+R+Q +D+IAAA ILQ VLDR+  + +
Sbjct: 125 DATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156


>gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 154

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 1/149 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           E+   +L P Q +  +DLG K IG+A+SD  R  A P   + RKK    +  LL   T  
Sbjct: 7   EEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLLEIATDR 66

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            I   ++GLP NM+GSEGPR  STRAF  N+  +   +P  FWDERL+TV+A++ L++ +
Sbjct: 67  EIGGIVLGLPRNMDGSEGPRCQSTRAFARNL-SQLTDIPIGFWDERLSTVAAKKALLEAD 125

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFL 155
            +RK+R Q +D +AA  ILQ  LDR+ FL
Sbjct: 126 TTRKRRGQVIDHVAAGYILQGALDRLRFL 154


>gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase
 gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 165

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 1/146 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P Q +  IDLGTK IGL++SD  RR A P   + R K T+ A  LL+     ++AAF+
Sbjct: 15  LGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLALADQFDVAAFV 74

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLPLNM+GS GPRV +T AFV ++       PF +WDERL+T +  + LI  + SR KR
Sbjct: 75  IGLPLNMDGSAGPRVQATEAFVRSL-SGLTSRPFCYWDERLSTAAVTRDLIAQDASRAKR 133

Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
              VD +AAA ILQ  LDR++++  +
Sbjct: 134 AAVVDKLAAAFILQGALDRLAWVHET 159


>gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510]
 gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510]
          Length = 178

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 5/156 (3%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           I  +EDL   L  NQ +  +D+GTK +GLA++DPG   A P   L R K TQ A EL   
Sbjct: 2   IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSA 118
           I    I   ++GLPLNM+GSEGPR  S RAF +N+++R   + +     FWDERL+T + 
Sbjct: 62  IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121

Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           ++ +I + +++RK+R + VD +AAA ILQ  LD ++
Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLA 157


>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
           Y4I]
 gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
           Y4I]
          Length = 157

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
           + ED   +L P   +  +DLGTK IG+A+SD     A P   + RKK +  A  LL  I 
Sbjct: 5   VFEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQ 64

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
             +I+  ++GLP NM+G+EGPR  STRAF  N++ +   +P  FWDERL+TV+A++ L++
Sbjct: 65  ARDISGILLGLPRNMDGTEGPRCQSTRAFARNLM-QLTDLPISFWDERLSTVAAEKALLE 123

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + +RK+R + +D +AA+ ILQ  LDR+  L++ 
Sbjct: 124 ADTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157


>gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601]
          Length = 158

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IED   +L  ++ +A +DLGTK IG+A+SD     A P   + RKK T  A  LL  +  
Sbjct: 6   IEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLLEILVK 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEGPR  STRAF  N   R    P  FWDERL+TV+A++ L++ 
Sbjct: 66  REIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SR KR + +D +AA+ ILQ  LDR+  L ++
Sbjct: 125 DTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157


>gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
 gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
          Length = 157

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE++ + L     +  +DLGTK IGLA+SD  RR A P   + R K +Q A  LL     
Sbjct: 8   IEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQD 67

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID 124
            ++ A + GLPLNM+G+ GPR  +TRAF+ N+  RK+  +PFVFWDERL+T +  + LI 
Sbjct: 68  FDVQALVFGLPLNMDGTAGPRAQATRAFMRNL--RKLTPIPFVFWDERLSTAAVTRELIA 125

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            + SR KR + VD +AAA ILQ  LDR+S L
Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSRL 156


>gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase
 gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
           17025]
          Length = 160

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE+ + +L  +  +  +DLGTK IG+A++D  RR A P   + R K T+ A  L +    
Sbjct: 6   IEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLRAITAE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N+  + + +P  +WDERL+TV+A++ LI+ 
Sbjct: 66  RGLVGIVLGLPRNMDGSEGPRAQSTRAFARNL-SQVLPLPIGYWDERLSTVAAERALIEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + SRK+R + +D +AA  ILQ VLDR+ +L
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWL 154


>gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 238]
 gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 238]
          Length = 158

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 95/151 (62%), Gaps = 1/151 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D   +L    P+A +DLGTK IG+A+ D G   A P   + R K    A  L        
Sbjct: 8   DFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLFEITAHRE 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +A  ++GLP NM+GSEGPR  STRAF  N+  R   +P  +WDERL+TV+A++ L++ + 
Sbjct: 68  VAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLSDLPITYWDERLSTVAAERALLEADT 126

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           SRK+R + +D+IAA++ILQ +LDR+  ++++
Sbjct: 127 SRKRRAEVIDNIAASIILQGLLDRLRNIKAA 157


>gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
 gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
          Length = 156

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE    +L P Q +  +DLGTK IG+A+SD  R  A P   + RKK    A  L + I  
Sbjct: 6   IEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQALIAG 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID 124
             I   I+GLP NM+G+EGPR  STRAF  N     ++  P  +WDERL+TV+A++ L++
Sbjct: 66  RRIGGLILGLPRNMDGTEGPRCQSTRAFARNFA--ALWDGPIGYWDERLSTVAAEKALLE 123

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            + +RK+R + +D +AA+ ILQ  LDR+ FL
Sbjct: 124 ADTTRKRRAEVIDHVAASYILQGALDRLRFL 154


>gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
 gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
          Length = 160

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 1/152 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +E+L   L     +  +D+GTK IGLA+SD  RR A P   + R K T  A  L + +  
Sbjct: 8   VEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVAQ 67

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +IAA I+GLPLNM+GSEGPR  +TRAF+ N+  R   + + FWDERL+T +  + L+  
Sbjct: 68  FDIAALIVGLPLNMDGSEGPRAQATRAFMRNLGAR-FALRYAFWDERLSTAAVTRELLAQ 126

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           + SR KR   VD +AAA ILQ  LDR+  L S
Sbjct: 127 DASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158


>gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
 gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
          Length = 168

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLGTK IG+A+SDP RR A     L RK  T  A  LL+     N A F++GLP+N
Sbjct: 26  LVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLAIAGERNAAGFVLGLPIN 85

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEGPR  STRAF  N+  R   +    WDERL+TV+ ++ LI M++SR KR + +D 
Sbjct: 86  MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERELIGMDMSRAKRAKVIDE 144

Query: 139 IAAALILQEVLDRISFL 155
            AA  ILQ  LDR++ L
Sbjct: 145 HAAIFILQGALDRLAVL 161


>gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
 gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ED   +L  +  +  +DLGT+ IG+A+SD  R  A P   + RKK    A  LL+     
Sbjct: 7   EDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALLAICEHR 66

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            I   ++GLP NM+GSEGPR  STR F  N+ +R   +P  FWDERL+TV+A++ L++ +
Sbjct: 67  AITGIVLGLPRNMDGSEGPRCQSTRGFARNL-ERLTPLPIAFWDERLSTVAAERALLEAD 125

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFL 155
            SR++R + +D +AA +ILQ +LDR+  L
Sbjct: 126 TSRRRRGEVIDHVAAGVILQGMLDRLRHL 154


>gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
          Length = 163

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLGTK IG+A+SDP RR A     L RK  T  A  LL+     N A F++GLP+N
Sbjct: 21  LVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLAIAGERNAAGFVLGLPIN 80

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEGPR  STRAF  N+  R   +    WDERL+TV+ ++ LI M++SR KR + +D 
Sbjct: 81  MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERELIGMDMSRAKRAKVIDE 139

Query: 139 IAAALILQEVLDRISFL 155
            AA  ILQ  LDR++ L
Sbjct: 140 HAAIFILQGALDRLAVL 156


>gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
 gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 1/148 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D + +L P Q +  +DLG K IG+A+SD  +  A P   + RKK    A  L   I    
Sbjct: 8   DFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLAEIIAKRR 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++GLP NM+GSEGPR  STRAF  N  DR   +P  +WDERL+TV+A++ L++ + 
Sbjct: 68  IGGLVLGLPRNMDGSEGPRCQSTRAFARN-FDRLTPLPITYWDERLSTVAAERALLEADT 126

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFL 155
           +RK+R + +D +AA  ILQ +LDR+  +
Sbjct: 127 TRKRRAEVIDHVAAGYILQGLLDRLQVM 154


>gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
           HTCC2150]
          Length = 156

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 5   LIEDLVK---SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           +IED V+   SLK   PI ++D G K IG+A SD  R  A P   + R K T  A  LL 
Sbjct: 3   IIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERLLE 62

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                 +  F++GLP NM+GSEG R   TRAF  N+ +R   +   FWDERL+TV+A++ 
Sbjct: 63  LAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFARNL-ERLTEINIAFWDERLSTVAAERA 121

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           LI+ + SR KR Q +D +AA  ILQ  LDR++ L
Sbjct: 122 LIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155


>gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
 gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
          Length = 158

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           E  V ++     +A +DLGT  IG+A+SD  R  A P   + RKK    A +LL   T  
Sbjct: 7   ETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLLELTTHR 66

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            +   ++GLP NM+GSEGPR  +TRAF  N+ ++   +P  FWDERL+TV+A++ L++ +
Sbjct: 67  LVTGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAERALLEAD 125

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            SRK+R + +D +AA  ILQ +LDR++ L+++
Sbjct: 126 TSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157


>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
           USDA 110]
 gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
          Length = 167

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + D          +  +DLGTK IG+A+S+P RR A     + RK   Q A  LL+ 
Sbjct: 11  ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 70

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                +  F++GLP+NM+GSEGPR  STRAF  N+ +    +P   WDERL+T + ++ L
Sbjct: 71  AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 129

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           I M+VSR KR + +D  AA  ILQ  LDR++ L +  G
Sbjct: 130 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167


>gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
 gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
          Length = 161

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I D   +L P Q +  +DLG K IG+A+SD     A P   + RKK    A  L   I  
Sbjct: 6   ITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLSEIIAA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEG R  STRAF  N  DR   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           + SR++R + +D +AA  ILQ VLDR+  +++
Sbjct: 125 DTSRRRRAEVIDHVAAGYILQGVLDRLRVIKA 156


>gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
          Length = 161

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + D          +  +DLGTK IG+A+S+P RR A     + RK   Q A  LL+ 
Sbjct: 5   ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                +  F++GLP+NM+GSEGPR  STRAF  N+ +    +P   WDERL+T + ++ L
Sbjct: 65  AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           I M+VSR KR + +D  AA  ILQ  LDR++ L +  G
Sbjct: 124 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161


>gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
 gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
          Length = 161

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I D   +L P Q +  +DLG K IG+A+SD     A P   + RKK    A  L   I  
Sbjct: 6   ITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLSEIIAA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEG R  STRAF  N  DR   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           + SR++R + +D +AA  ILQ VLDR+  +++
Sbjct: 125 DTSRRRRAEVIDHVAAGYILQGVLDRLRVIKA 156


>gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
 gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase
 gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
          Length = 160

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SDP RR A     + RK  T  A  LL+     N   F++GLPLNM+
Sbjct: 23  GLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLALAAGRNACGFVLGLPLNMD 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPRV STRAF  N   R   +P   WDERL+T + ++ LI  +VSR KR + +D  A
Sbjct: 83  GSEGPRVQSTRAFARNFA-RLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHA 141

Query: 141 AALILQEVLDRISFL 155
           A  ILQ  LDR++ L
Sbjct: 142 AIYILQGALDRLATL 156


>gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisA53]
 gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase
 gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisA53]
          Length = 163

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   +  +DLGTK IG+A+SDP RR A     ++RK  T  A  LL+  T       ++G
Sbjct: 17  PTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLALATERKAVGLVLG 76

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+NM+ SEGPR  STRAF  N+  R   +P   WDERL+T + ++ LI  +VSR KR +
Sbjct: 77  LPINMDASEGPRAQSTRAFARNLA-RLTELPIGLWDERLSTAAVERELIANDVSRAKRAK 135

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA  ILQ  LDR++ L  S G
Sbjct: 136 VIDEHAAIFILQGALDRLAVLNRSTG 161


>gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
 gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
          Length = 159

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L + DL  +  P+ P   +DLG K IG+A+SD  R  A P   + + K T  A +L 
Sbjct: 1   MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    ++A +IGLP NM+G+EGPR  S RAF  N+ +R   V   FWDERL+T + ++
Sbjct: 61  KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFARNL-ERLRPVNIAFWDERLSTSAVER 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            LI D++++RK+R Q VD  AAA ILQ  LDR+
Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRV 152


>gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
 gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
          Length = 161

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +E+   +L P + IA +D G K IG+A+SD     A P   + R+K  Q A  L + +  
Sbjct: 6   VEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALSALLAA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILI 123
             I   ++GLP NM+GSEGPR  STRAF  N+  R  +  +P  FWDERL+TV+A++ L+
Sbjct: 66  RTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAAERALL 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + + SR++R + +D +AA  ILQ  LDR+  L+ +
Sbjct: 126 EADTSRRRRAEVIDHVAAGYILQGALDRLRHLKGA 160


>gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 157

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 93/152 (61%), Gaps = 1/152 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ED   +L     +  +D G K IG+A+SD     A P   + RKK T  +  LL  I+  
Sbjct: 7   EDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIISGR 66

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
           +I   I+GLP NM+GSEGPR  STRAF  N+  R   +P  FWDERL+TV+A++ L++ +
Sbjct: 67  DINGIILGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEAD 125

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            SRK+R + +D +AA+ ILQ  LDR+  ++S 
Sbjct: 126 TSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157


>gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
 gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
          Length = 163

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 3/154 (1%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D + +L P + +  +DLGT+ IG+A+SD     A P   + R+K T  A  L+   +   
Sbjct: 8   DFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLVEIASERR 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125
           +   ++GLP NM+GSEGPR  STRAF  N+ ++ +   +P  FWDERL+TV+A++ L++ 
Sbjct: 68  LGGLVLGLPRNMDGSEGPRCQSTRAFARNL-EKTIGSDLPITFWDERLSTVAAERALLEA 126

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           + SRK+R + +D +AA  ILQ  LDRI  + + +
Sbjct: 127 DTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160


>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp.
           ORS278]
 gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
 gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278]
          Length = 161

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLGTK IG+A+SDP RR A     + RK     A  LL+      +  F++GLP+N
Sbjct: 21  LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLPIN 80

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEGPR  STRAF  N+      +P   WDERL+T + ++ LI M+VSR KR + +D+
Sbjct: 81  MDGSEGPRAQSTRAFARNLAG-LTDLPIGLWDERLSTAAVERELIGMDVSRAKRAEVIDT 139

Query: 139 IAAALILQEVLDRISFLESS 158
            AA  ILQ  LDR++ L  S
Sbjct: 140 HAAIFILQGALDRLTTLRRS 159


>gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
 gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase
 gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
          Length = 157

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 1/152 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ED   +L     +  +D G K IG+A+SD     A P   + RKK T  +  LL  I   
Sbjct: 7   EDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGR 66

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
           +I   ++GLP NM+GSEGPR  STRAF  N+  R   +P  FWDERL+TV+A++ L++ +
Sbjct: 67  DINGILLGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEAD 125

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            SRK+R + +D +AA+ ILQ  LDR+  + SS
Sbjct: 126 TSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157


>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
 gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
 gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 188

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I  + +L  SL  N  +  +DLG K IGLA+SDPG   A P   + R K TQ A EL 
Sbjct: 1   MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTV 116
             +   ++ A ++GLP+NM+G+EGPR  S R F   ++ R     F     FWDERL+T 
Sbjct: 61  RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + ++++I  +++RK+R + VD +AAA ILQ  LDR+   +++ G
Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164


>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
 gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
          Length = 157

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            ED   +L     +A +D G K +G+AISD     A P   + RKK T  A  L   +  
Sbjct: 6   FEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLFEIVKK 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEGPR   TRAF  N+  R   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  REIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-SRLTELPIGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SRK+R + +D +AA+ ILQ  LDR+  L++ 
Sbjct: 125 DTSRKRRAELIDHVAASYILQGALDRMRHLKND 157


>gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114]
 gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase
 gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 163

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 3/154 (1%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D + +L   + +  +DLGT+ IG+A+SD     A P   + R+K T  A  L   +    
Sbjct: 8   DFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLSDIVAQRR 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125
           +   ++GLP NM+GSEGPR  STRAF  N+ D+ +   +P  FWDERL+TV+A++ L++ 
Sbjct: 68  LGGLVLGLPRNMDGSEGPRCQSTRAFARNL-DKSIGSDLPITFWDERLSTVAAERALLEA 126

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           + SRK+R + +D +AAA ILQ  LDRI  + + +
Sbjct: 127 DTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160


>gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
           DS-1]
 gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
           DS-1]
          Length = 182

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 1/147 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           + +L   L  N+ +  +DLG+K IGLA+SD     A P   + R K T  A  L++    
Sbjct: 34  LAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIALAKE 93

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +  A + GLPLNM+G+EGPR  STRAF+ N+ ++   +P  FWDERL+T++  + L+D 
Sbjct: 94  HDAGALVFGLPLNMDGTEGPRCQSTRAFIRNL-EKLTDLPIAFWDERLSTMAVTRTLLDA 152

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
           + SR +R + VD +AAA ILQ  LDR+
Sbjct: 153 DASRARRAELVDKMAAAYILQGALDRL 179


>gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
 gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
          Length = 185

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           + ++  +L     +  +DLGTK IG+A  DP RR A     + R K TQ A  L+   + 
Sbjct: 35  LAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMVLASE 94

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
               AF++GLPLNM+GSEGPRV ++RAF  N   R   +P  FWDERL+TV+ ++ LI  
Sbjct: 95  RKAVAFVLGLPLNMDGSEGPRVQASRAFARNFA-RLSGLPIAFWDERLSTVAVERALISA 153

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
           +VSR KR   +D  AAA ILQ  +D
Sbjct: 154 DVSRAKRANVIDQHAAAFILQGAID 178


>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
 gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
 gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
          Length = 161

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 1/140 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLGTK IG+A+SDP RR A     + RK     A  LL+  +   +  F++GLP+N
Sbjct: 21  LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAISSERKVVGFVLGLPIN 80

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEGPR  STRAF  N+ +    +P   WDERL+T + ++ LI M+VSR +R + +D+
Sbjct: 81  MDGSEGPRAQSTRAFARNLAN-LTDLPIGLWDERLSTAAVERELIGMDVSRARRAEVIDT 139

Query: 139 IAAALILQEVLDRISFLESS 158
            AA  ILQ  LDR++ L  S
Sbjct: 140 HAAIFILQGALDRLATLRRS 159


>gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 158

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I +   ++     +A +DLGT  IG+A+SD     A P   + RKK +  A  LL     
Sbjct: 6   ITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLLEIAKD 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N+ ++   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RELGGLVLGLPYNMDGSEGPRCQSTRAFARNL-EKLTDLPISFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + +RK+R + +D +AA  ILQ VLDR + L +S
Sbjct: 125 DTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157


>gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius
           nubinhibens ISM]
 gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius
           nubinhibens ISM]
          Length = 158

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 5/158 (3%)

Query: 5   LIEDLVKSLKPNQP----IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           +I D  +S     P    +  +DLGTK +G+A+SD  R  A P   + R+K T  A  L 
Sbjct: 1   MIHDAFESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQ 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I   ++   ++GLP NM+GSEGPR  STRAF  N   +   +P  FWDERL+TV+A++
Sbjct: 61  ELIAARSVVGVVLGLPRNMDGSEGPRCQSTRAFARNFA-QLTDLPIGFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D +AA+ ILQ  LDR+  +  S
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157


>gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
 gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
          Length = 157

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 1/141 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           PIA +D G K +G+AISD     A P   + RKK T  A +L   +    I A ++GLP 
Sbjct: 18  PIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLFEIVKAREIGALLLGLPR 77

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGPR   TRAF  N+  +   +P  FWDERL+TV+A++ L++ + SRK+R + +D
Sbjct: 78  NMDGTEGPRCQKTRAFARNL-SQLTDLPIGFWDERLSTVAAERALLEADTSRKRRSEVID 136

Query: 138 SIAAALILQEVLDRISFLESS 158
            +AA+ ILQ  LDR+  L++ 
Sbjct: 137 HVAASYILQGALDRMRHLKTG 157


>gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
 gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
          Length = 156

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 1/146 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           +    L   + +  +DLGTK IG+A+SD     A PR  + RKK       L +   + +
Sbjct: 9   EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               I+GLP+NM+GSEGPR  +TRAF  N+  R   +P  FWDERL++V+A++ +++ ++
Sbjct: 69  TGGIILGLPMNMDGSEGPRCQATRAFARNLSSR-CDIPITFWDERLSSVAAERAMLEADM 127

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
           SR KR   +D +AA+ ILQ  LDRI 
Sbjct: 128 SRAKRADNIDHVAASFILQGALDRIG 153


>gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
 gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
          Length = 157

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE+  +++     +A +D G K IG+AISD     A P   + RKK T  A  L      
Sbjct: 6   IEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLFEITKA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEGPR   TRAF  N+ ++   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  REIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-EKLTELPITFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SRK+R + +D +AA+ ILQ  LDR+  ++  
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRMRHMKDG 157


>gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
 gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
 gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
 gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
          Length = 157

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 2/145 (1%)

Query: 15  PN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           PN  PIA +D G K +G+AISD     A P   + RKK T  A  L   +    + A ++
Sbjct: 14  PNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLFEIVKDREVGALLL 73

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+G+EGPR   TRAF  N+  +   +P  FWDERL+TV+A++ L++ + SRK+R 
Sbjct: 74  GLPRNMDGTEGPRCQKTRAFARNLA-KLTELPIGFWDERLSTVAAERALLEADTSRKRRA 132

Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
           + +D +AA+ ILQ  LDR+  +++ 
Sbjct: 133 EVIDHVAASYILQGALDRMRHIKAG 157


>gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
 gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
          Length = 160

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + +    L     +  +DLGTK IG+A SDP RR A     + RK+ T  A  +LS 
Sbjct: 5   ILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGRVLSL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                    ++GLP+NM+GSEGPR  ++RAF  N+  R   +P + WDERL+T + ++ +
Sbjct: 65  AAARGAVGLVLGLPVNMDGSEGPRAQASRAFARNL-SRLTELPIMLWDERLSTAAVERDM 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           I  ++SR +R + VD  AAA ILQ  LDR+ F+   +
Sbjct: 124 IATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160


>gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 154

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L + +L  +  PN P   +DLG   IG+++SD GR  A P   + + K +Q A +L 
Sbjct: 1   MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    ++A +IGLPLNM+G+EGPR  S RAF  N+ +R   V   F DERL+T + ++
Sbjct: 61  RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFARNL-ERFRPVNVAFQDERLSTTAVER 119

Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
            LID ++++RK+R   VD  AAA ILQ  LDR+
Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRL 152


>gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase
          Length = 155

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL   +L+ SL  +Q +  +DLG+K IGLA+SD  R  A P   + R K TQ A  LL
Sbjct: 1   MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + +   ++GLP+ M+G EGPR  S R+F  N+  R   +P  +WDERL+T +  +
Sbjct: 61  AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L++ + SRK+R + VD +AAA ILQ +LD
Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 149


>gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum
           AMB-1]
 gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum
           AMB-1]
          Length = 159

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL   +L+ SL  +Q +  +DLG+K IGLA+SD  R  A P   + R K TQ A  LL
Sbjct: 5   MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + +   ++GLP+ M+G EGPR  S R+F  N+  R   +P  +WDERL+T +  +
Sbjct: 65  AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 123

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L++ + SRK+R + VD +AAA ILQ +LD
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 153


>gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
 gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
          Length = 204

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 89/153 (58%), Gaps = 1/153 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + D      P   +  +DLGTK IG+A+SDP RR A     + RK  T+ A ELL  
Sbjct: 47  ILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLKI 106

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                 A F++GLP+NM+GSEGPR  STRAF  N   +   +    WDERL+T + ++ L
Sbjct: 107 SGERACAGFVLGLPINMDGSEGPRAQSTRAFARNFA-KLTELAIGLWDERLSTAAVEREL 165

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +  +VSR +R + +D  AA  ILQ  LDR++ L
Sbjct: 166 LANDVSRARRAEVIDEHAAIFILQGALDRLTAL 198


>gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 155

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 2/148 (1%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I +   +L     +  +D GTK IG+A+ D G RFA P   L R+K  Q   E++  I  
Sbjct: 6   IGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIVGIIAQ 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            ++   +IGLPLNM+GSE PR  + RA   N+ D  + +P + WDER TT +A++ +I  
Sbjct: 66  RSVRGIVIGLPLNMDGSESPRSQAARAMARNLAD--LALPTLLWDERWTTQAAERAMIAQ 123

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
           ++SR KR +++D+ AAALILQ  +D ++
Sbjct: 124 DMSRAKRAERIDAHAAALILQGAIDALA 151


>gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis
           HTCC2594]
 gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594]
          Length = 167

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 1/133 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++DLGTK IG A SD G RFA     L R +  +   +L   +++ N+A  ++GLP NM+
Sbjct: 27  ALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRNVAGLVLGLPRNMD 86

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  ++RA+  N+ +    +P + WDER +T SA+  +I  ++SR KR +K+DS A
Sbjct: 87  GSEGPRAQASRAYARNLAE-AFGLPVLLWDERWSTQSAESAMIGQDMSRAKRAEKIDSHA 145

Query: 141 AALILQEVLDRIS 153
           AA+ LQ  LD ++
Sbjct: 146 AAIFLQAALDTLA 158


>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
           Holliday junction resolvase in Mycoplasmas and B.
           subtilis) [Magnetospirillum magnetotacticum MS-1]
          Length = 159

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL   +L+ SL  +Q +  +DLG+K IGLA+SD  R  A P   + R K T+ A +LL
Sbjct: 5   MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  +++   ++GLP+ M+G EGPR  S R+F  N+  R   +P  +WDERL+T +  +
Sbjct: 65  AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 123

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L++ + SRK+R + VD +AAA ILQ +LD
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 153


>gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
 gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase
 gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
          Length = 152

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 2/146 (1%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D   +L     +A +D+GTK IG+A+ D G  FA P   +VRK+ +     L + +  + 
Sbjct: 8   DFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALKALVAGQA 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +   ++GLPLNM+GS+ PR  STRAF  N+    + +P + WDER +T + ++ +I  +V
Sbjct: 68  VVGLVVGLPLNMDGSDSPRTQSTRAFARNLA--PLGLPVLLWDERWSTAAVERAMIAADV 125

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
           SR KR +++DS AAA ILQ  +D ++
Sbjct: 126 SRAKRAERIDSAAAAFILQGAIDAMT 151


>gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
 gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
          Length = 165

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 1/153 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + +      P   +  +DLGTK IG+A+SDP RR A     + RK  T+ A ELL  
Sbjct: 10  ILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAELLRI 69

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                 + F++GLP+NM+GSEGPR  STRAF  N   +   +    WDERL+T + ++ L
Sbjct: 70  AGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAVEREL 128

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           I  +VSR +R + +D  AA  ILQ  LDR++ L
Sbjct: 129 IANDVSRARRAEVIDEHAAIFILQGALDRLAAL 161


>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
           JCM 2831]
          Length = 170

 Score =  120 bits (300), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            IDLGTK IGLA+SD GR+ A P   + R K T  A  L +      +   ++GLPLNM+
Sbjct: 21  GIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLAALCRQHAVGGLVVGLPLNMD 80

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPRV STRAF+ N+    + +P VF+DERL+T    + LI+ + SR +R Q VD +A
Sbjct: 81  GSEGPRVQSTRAFMRNLAP-ILPLPHVFFDERLSTAVVTRALIEADASRARRGQLVDKLA 139

Query: 141 AALILQEVLD 150
           AA ILQ  LD
Sbjct: 140 AAYILQGCLD 149


>gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
           15264]
          Length = 173

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           +L + DL  +  P+     +DLG   IG+A SD  R  A P   + + K T  A  L   
Sbjct: 11  VLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFRL 70

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           +    ++A +IGLP+NM+G+EGPR  S RAF  N+ DR   V   FWDERL+T + ++ L
Sbjct: 71  MDHRKVSALVIGLPVNMDGTEGPRAQSCRAFARNL-DRIRPVNVAFWDERLSTSAVERFL 129

Query: 123 ID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
           ID +++SRK+R   VD  AAA ILQ  LDR+
Sbjct: 130 IDELDLSRKRRAGVVDRTAAAWILQGALDRV 160


>gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum
           HLK1]
 gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase
 gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum
           HLK1]
          Length = 156

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ + DL     PN P+  +DLG K IG+A+SD  R  A P   + + K T  A  L 
Sbjct: 1   MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +   +  +IGLP+NM+G+EG R  S RAF  N++  +  +P  FWDER++T++  +
Sbjct: 61  KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +L+ + +++R +R   VD +AAA ILQ  LDR+  L
Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156


>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
           bathyomarinum JL354]
          Length = 162

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           L ++L     +  +DLGTK IG+A+ D G RFA     L R K  +   EL   I   +I
Sbjct: 14  LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              +IGLP NM+GSEGPR  ++RA+  N+ +    +P + WDER +T SA+  +I ++VS
Sbjct: 74  RGIVIGLPRNMDGSEGPRAQASRAYARNLAE-AFGLPVLLWDERWSTKSAEDAMIGLDVS 132

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R+KR +++D+ AA +ILQ  +D
Sbjct: 133 RRKRAERIDAEAATIILQGAID 154


>gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium
           HTCC2654]
          Length = 155

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77
           +A +D G K IG+A+SD  R+ A P   + R KK TQ A  L++ +    I+  ++GLP 
Sbjct: 19  LAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLGLPR 78

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGPR   TRAF  N + R    P  FWDERL+TV+A++ L++ + SR KR   +D
Sbjct: 79  NMDGTEGPRCQKTRAFARN-LSRLTERPITFWDERLSTVAAERALLEADTSRAKRSGVID 137

Query: 138 SIAAALILQEVLDRISFL 155
            +AA  ILQ  LDR+  L
Sbjct: 138 HVAAGYILQGALDRMRHL 155


>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
 gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
          Length = 154

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 3/130 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GTK IG A+ D G  FA P   + R K T+    L++ I  + +   +IGLPLN++
Sbjct: 23  GLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEALIAMIAQQGVKGLVIGLPLNLD 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSE PR  STRAF  N  D     P + WDER +TV+ ++ +I+ ++SR KR +++D++A
Sbjct: 83  GSESPRSQSTRAFARNCAD---LGPILLWDERWSTVAVERTMIEQDMSRAKRAERIDNLA 139

Query: 141 AALILQEVLD 150
           AA ILQ  +D
Sbjct: 140 AAHILQAAID 149


>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
 gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
          Length = 166

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLGT+ IG+A+SDP RR A     + RK  T  A  LL+     +   FI+GLP+N
Sbjct: 21  LVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLAIAGERHAKGFILGLPIN 80

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEGPR  STRAF  N+  R   +    WDERL+T + ++ LI +++SR +R + +D 
Sbjct: 81  MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTAAVERELIGLDMSRARRARVIDE 139

Query: 139 IAAALILQEVLDRISFLESSKG 160
            AA  ILQ  LDR++    S G
Sbjct: 140 HAAIFILQGALDRLAAQRRSSG 161


>gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae
           DFL 12]
 gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12]
          Length = 163

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 85/140 (60%), Gaps = 1/140 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +  +DLGT  IG+A+SD     A P   + RKK    A  L + +   ++   I+GL
Sbjct: 18  GRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLEALMDARDVGGLILGL 77

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+GSEGPR  STRAF  N   R+  +P  FWDERL+TV+A++ L++ + SR +R + 
Sbjct: 78  PRNMDGSEGPRAQSTRAFARNFTARRP-IPIAFWDERLSTVAAERALLEADTSRARRAEV 136

Query: 136 VDSIAAALILQEVLDRISFL 155
           +D +AA+ ILQ  LDR   +
Sbjct: 137 IDHVAASYILQGALDRFGHM 156


>gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
 gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase
 gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
          Length = 160

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SDP R+ A     + R   T  A  +L+     +   F++GLPLNM+
Sbjct: 23  GLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLALAAERSACGFVLGLPLNMD 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  STRAF  N   R   +P   WDERL+T + ++ LI  +VSR KR + +D  A
Sbjct: 83  GSEGPRAQSTRAFARNFA-RLTELPIGLWDERLSTAAVERALIANDVSRAKRAKIIDEHA 141

Query: 141 AALILQEVLDRISFL 155
           A  ILQ  LDR+  L
Sbjct: 142 AIYILQGALDRLVAL 156


>gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15]
 gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus
           NA1000]
 gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase
 gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase
 gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus
           NA1000]
          Length = 156

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L IED   +L     +  +D G K IG+A+SD  R  A P   + + K ++ A +L 
Sbjct: 1   MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +    A +IGLP+NM+G+EG R  S RA   N++  K  +P  FWDERL+T +  +
Sbjct: 61  KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120

Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LID  ++SRK+R + VD +AA  ILQ  L+R+  L
Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156


>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
           2060]
 gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
           2060]
          Length = 163

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IGLA+SD GRR A P   + R K T  A +L        +   +IGLPLNM+
Sbjct: 22  GLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKLAGIARQHGVGGLVIGLPLNMD 81

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  STRAFV N+    + +P + +DERL+T +  + L++ + SR +R   VD +A
Sbjct: 82  GSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGDLVDKLA 140

Query: 141 AALILQEVLDRISFL 155
           AA ILQ  LD ++ L
Sbjct: 141 AAYILQGCLDVLAGL 155


>gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
 gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
          Length = 168

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 1/139 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IGLA+SD GRR A P   + R K T  A  L +      +   ++G PLNM+
Sbjct: 22  GLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRLAAIAAEHGVGGLVVGHPLNMD 81

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  STRAFV N+    + +P + +DERL+T +  + L++ + SR +R + VD +A
Sbjct: 82  GSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGKLVDKLA 140

Query: 141 AALILQEVLDRISFLESSK 159
           AA ILQ  LD ++ LE  +
Sbjct: 141 AAYILQGCLDVLAGLEPEE 159


>gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
 gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
 gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
          Length = 163

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           S+L + +          +  +DLGTK IG+A+SDP RR A     + RK  T  A  LL+
Sbjct: 4   SVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                    FI+GLP+NM+GSEGPR  STRAF  N+  R        WDERL+T + ++ 
Sbjct: 64  IAGERRAEGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDFAIGLWDERLSTAAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           LI +++SR +R + +D  AA  ILQ  LDR++    + G
Sbjct: 123 LIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161


>gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
 gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
          Length = 156

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L IED   +L    P+  +D G K IG+A+SD  R  A P   + + K ++ A  L 
Sbjct: 1   MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +      +IGLP+NM+G+EG R  S RA   N++  K  +P  FWDERL+T +  +
Sbjct: 61  KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LI + +V+RK+R + VD +AA  ILQ  L+R+  L
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156


>gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
          Length = 160

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 92/154 (59%), Gaps = 2/154 (1%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +++   ++ P + +  +DLGTK IG+A+SD     A     + RKK    A  L   I  
Sbjct: 6   LDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAK 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILI 123
             +   I+GLP NM+GSEGPR  +TRAF  N+  R    ++   FWDERL+TV+A++ LI
Sbjct: 66  HEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALI 125

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
             + SRK+R + +D++AA+ ILQ  LDR+  L +
Sbjct: 126 AADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159


>gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas
           palustris CGA009]
 gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas
           palustris TIE-1]
 gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase
 gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase
 gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1]
          Length = 160

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 1/139 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A SDP R+ A     + RK  T  A  LL+         F++GLPLNM+
Sbjct: 23  GLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMD 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  STRAF  N+  R   +P   WDERL+T + ++ LI  +VSR KR + +D  A
Sbjct: 83  GSEGPRAQSTRAFARNL-SRLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHA 141

Query: 141 AALILQEVLDRISFLESSK 159
           A  ILQ  LDR++ L  ++
Sbjct: 142 AIFILQGALDRLAALRRAE 160


>gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
 gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
          Length = 162

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%)

Query: 26  TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
           TK IG+A  D G RFA     + R K T    +L   +T  +IA  ++GLP NM+G+EGP
Sbjct: 32  TKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTARSIAGLVVGLPRNMDGTEGP 91

Query: 86  RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
           R  ++RA+  N+  R   +P + WDER +T SA+  +I  ++SR KR +K+DS AAA+IL
Sbjct: 92  RAQASRAYAKNLA-RAFGLPVLLWDERWSTSSAESAMIGQDMSRAKRAEKIDSHAAAVIL 150

Query: 146 QEVLDRIS 153
           Q  +D ++
Sbjct: 151 QGAIDTLA 158


>gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
 gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase
 gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
          Length = 164

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L I +   ++    PI  +D G K IG+A+SD     A P   + + K ++ A  L 
Sbjct: 1   MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +   A  +IGLP+NM+G+EG R  S RA   N++  + ++P  FWDERL+T +  +
Sbjct: 61  QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +LI + +V+RK+R + VD +AAA ILQ  L+R+  +  + G
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161


>gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 159

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  + D+ +S+   Q +  +D+G K IGLA+SD G + A P   L R K T    EL 
Sbjct: 1   MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +  +N+   ++G P+NM+GS GPR  STR F + ++ R   VP  F DERL+T + + 
Sbjct: 61  KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFAYALM-RIRDVPVFFQDERLSTQAVES 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            +I  +++R KR  + D++AA  ILQ  LD I
Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151


>gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 163

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL I +L  +L  +  +  +DLGTK IGLA+SD     A P   + R K T+ A  L 
Sbjct: 1   MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +     A  ++GLP+ M+G+EG R  STRAF  N++  +  +P VFWDERL+T +  +
Sbjct: 61  AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLGLR-DLPIVFWDERLSTAAVTR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L++ + SR +R + VD +AAA ILQ  LD
Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALD 149


>gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
           C19]
 gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
           C19]
          Length = 157

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I +L   L     +  +DLG K IG+A+SD     A P   + + K T  A  L 
Sbjct: 1   MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +     A  +IGLP+NM+G+EGPR  S RAF  N++ R   VP  FWDER ++ +  +
Sbjct: 61  HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLL-RLRDVPIAFWDERWSSAAMNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            LI + ++SR KR + +D  AAA ILQ  LDRI
Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRI 152


>gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
 gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
          Length = 176

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 1/148 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           + D+   L P   +  +DLGTK IG+A  DP RR A     + R K T  A  LL+    
Sbjct: 13  LADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLALAAE 72

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                F++GLPLNM+ SEGPR  ++RAF  N+  R   +P   WDERL+T + ++ LI  
Sbjct: 73  RRAVGFVLGLPLNMDASEGPRAQASRAFARNLA-RLTALPIALWDERLSTAAVERALISA 131

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
           +VSR +R   VD  AAA IL+  L  +S
Sbjct: 132 DVSRARRAAVVDQHAAAFILEGALGFLS 159


>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
 gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
          Length = 145

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD     A     + RKK    A  L   I    +   I+GLP NM+
Sbjct: 6   GLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGLPRNMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           GSEGPR  +TRAF  N+  R    ++   FWDERL+TV+A++ LI  + SRK+R + +D+
Sbjct: 66  GSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSEVIDA 125

Query: 139 IAAALILQEVLDRISFLES 157
           +AA+ ILQ  LDR+  L +
Sbjct: 126 VAASYILQGALDRLRHLRA 144


>gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
           HTCC2083]
 gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 160

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I+D   +L   + +  +DLGTK IG+++SD     A P   + R K T  A  L   I  
Sbjct: 6   IDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLEQIIEA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEGPR  STRAF  N+  R+  +P  +WDERL+TV+A++ L+  
Sbjct: 66  RYIGGIVLGLPFNMDGSEGPRCQSTRAFARNLA-RQSELPITYWDERLSTVAAERALLAA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + SR++R + +D++AAA ILQ  LDR+S +
Sbjct: 125 DASRRRRAEVIDNVAAAYILQGALDRLSHI 154


>gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
 gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase
 gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
          Length = 158

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++  + DL  +L  N  +  +D G+K IG+A+SD GRR A P   + R K+ + A  +L
Sbjct: 1   MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                E  AA IIGLPL+M+GS GP   + R + H  I R+  +P    DERL++ +  +
Sbjct: 61  DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAH-AIARETGLPVAMMDERLSSAAVNR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            LI+ +V+R KR  +VD+ AA+ +LQ  LD
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALD 149


>gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum
           AIU301]
 gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum
           AIU301]
          Length = 158

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++  + DL  +L  N  +  +D G+K IG+A+SD GRR A P   + R K+  +A  +L
Sbjct: 1   MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                E  AA IIGLPL+M+GS GP   + R + H  I R+  +P    DERL++ +  +
Sbjct: 61  DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAH-AIARETGLPVAMMDERLSSAAVNR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            LI+ +V+R KR  +VD+ AA+ +LQ  LD
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALD 149


>gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
 gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
          Length = 160

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD GR+ A P   + R K T     ++S   T  +   +IGLPLNM+
Sbjct: 16  GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD 75

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  S+R+F  N+    + +P +F+DERL+T +  + LI+ + SR +R + VD +A
Sbjct: 76  GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 134

Query: 141 AALILQEVLD 150
           AA ILQ  LD
Sbjct: 135 AAYILQSCLD 144


>gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
           CM4]
 gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
           CM4]
          Length = 165

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD GR+ A P   + R K T     ++S   T  +   +IGLPLNM+
Sbjct: 21  GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD 80

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  S+R+F  N+    + +P +F+DERL+T +  + LI+ + SR +R + VD +A
Sbjct: 81  GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 139

Query: 141 AALILQEVLD 150
           AA ILQ  LD
Sbjct: 140 AAYILQSCLD 149


>gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
 gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
          Length = 158

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P  P+  +D G+K IG+A+S P RR A P   + R K  + A  L +      +   IIG
Sbjct: 13  PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +PLNM+GSEGPR  S R F  N+  R   +P  +WDERL++V+A++ L+  + SR +R +
Sbjct: 73  VPLNMDGSEGPRAQSARTFGRNLSQRG-PLPVAYWDERLSSVAAERALLATDTSRARRAE 131

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA  ILQ  LDR++
Sbjct: 132 VIDAHAATHILQGALDRLA 150


>gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
 gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
          Length = 150

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 6/154 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL ++     L P  P+  +D GTK IG+A +D  R  A P   + + K    AL  L
Sbjct: 1   MAILELD----QLPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56

Query: 61  SFITTENIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
             +  + +    +IGLP+NM+GS GPRV + RA   N+++++  VP  FWDERL+T + +
Sbjct: 57  FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           + L++ + SR KR + +D +AAA ILQ  +DR+S
Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLS 149


>gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4]
 gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens
           DM4]
          Length = 160

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD GR+ A P   + R K T     +++   T  +   +IGLPLNM+
Sbjct: 16  GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPLNMD 75

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  S+R+F  N+    + +P +F+DERL+T +  + LI+ + SR +R + VD +A
Sbjct: 76  GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 134

Query: 141 AALILQEVLD 150
           AA ILQ  LD
Sbjct: 135 AAYILQSCLD 144


>gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisB18]
 gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase
 gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisB18]
          Length = 163

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 1/138 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SDP RR A     ++       A  LL      N   F++GLP+NM+
Sbjct: 23  GLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLLLAGQRNAVGFVLGLPINMD 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  STRAF  N   R   +P   WDERL+T + ++ LI  +VSR KR + +D  A
Sbjct: 83  GSEGPRAQSTRAFARNFA-RLTDLPIGLWDERLSTSAVERELIANDVSRAKRAKVIDEHA 141

Query: 141 AALILQEVLDRISFLESS 158
           A  ILQ  LDR++ L ++
Sbjct: 142 AIFILQGALDRLTVLNAA 159


>gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
 gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
          Length = 165

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD GR+ A P   + R K T  A  +++      +   +IGLPLNM+
Sbjct: 21  GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIVALCAAHGVGGLVIGLPLNMD 80

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  S+R+F  N+    + +P +F+DERL+T +  + L++ + SR +R + VD +A
Sbjct: 81  GSEGPRAQSSRSFARNLR-PLLPLPVLFFDERLSTAAVTRTLLEADASRARRGEVVDKLA 139

Query: 141 AALILQEVLD 150
           AA ILQ  LD
Sbjct: 140 AAYILQSCLD 149


>gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
 gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
          Length = 151

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 6/155 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I+ +EDL     P+ P+ ++D G+K IG+A     R  + P   + R K T  A  + 
Sbjct: 1   MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +      A ++GLP+NM+GSEGPRV S RA   N++ R   +P  F DERL+T  A++
Sbjct: 56  ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMARNLM-RLRDLPIAFQDERLSTFEAEE 114

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI   V R KR   +D+ AAA ILQ  LDR+  L
Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEML 149


>gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens
           AM1]
 gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens
           AM1]
          Length = 165

 Score =  110 bits (274), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD GR+ A P   + R K T     +++   T  +   +IGLPLNM+
Sbjct: 21  GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPLNMD 80

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  S+R+F  N+    + +P +F+DERL+T +  + L++ + SR +R + VD +A
Sbjct: 81  GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLLEADASRARRGELVDKLA 139

Query: 141 AALILQEVLD 150
           AA ILQ  LD
Sbjct: 140 AAYILQSCLD 149


>gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
 gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase
 gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
          Length = 161

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  ++    +L P +P+  +DLGT+ IG+A SD     A P   + R+K T    EL 
Sbjct: 1   MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +       A  ++GLP+ M+GSEGPR  +TRAF  N++  +  +P + WDERL+T +  +
Sbjct: 61  ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALR-DLPVLLWDERLSTAAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
            L+ + +++R +R + VD  AAA ILQ  LD
Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALD 150


>gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 166

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 1/133 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK +GLA+SD  R  A     + R K T  A  LL+  T   +   ++GLP N++
Sbjct: 32  GIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALATEHGVTGLVLGLPRNLD 91

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+EGPR  +TRA   N+ ++   +P + WDERLTT  A+++LID + SRK+R + +D +A
Sbjct: 92  GTEGPRAQATRALARNL-NKLSPLPILLWDERLTTAEAERMLIDADQSRKRRGEVIDKLA 150

Query: 141 AALILQEVLDRIS 153
           A +ILQ  LDR+ 
Sbjct: 151 ATIILQSALDRLG 163


>gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48]
 gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48]
          Length = 167

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 11/163 (6%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL I +L  +L P + +  +DLG K IG+A+SD       P   + + K TQ A  LL
Sbjct: 1   MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----------VPFVFWD 110
             +     +  +IGLP+NM+G+EGPR  S RAF  N++               +P  FWD
Sbjct: 61  LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120

Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           ER ++    + LI + +++R KR + +D  AAA ILQ  LDRI
Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRI 163


>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
 gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
          Length = 160

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            IDLGTK IGLAISD     + P   + R K T     +L F T E ++  +IGLPLNM+
Sbjct: 24  GIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFATAERVSGIVIGLPLNMD 83

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  S+RAF  N+  R   +P   WDE L+T  A + +     ++ K   K+D++A
Sbjct: 84  GSEGPRAQSSRAFARNL-SRLTELPIQLWDESLSTSEALEGVSAKKAAQMKADGKLDALA 142

Query: 141 AALILQEVLDRISFL 155
           A+LILQ   D +  L
Sbjct: 143 ASLILQGCCDAMRAL 157


>gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
 gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
          Length = 156

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 2/130 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GTK IGLA+ D G   A P   + R K ++  + L +F+  + +   +IGLPLN++
Sbjct: 23  GLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIALAAFMEQQQVKGVVIGLPLNLD 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSE PR  ++RAF  N+ D  + +P +FWDER +T +  + L++ + SR +R + VD +A
Sbjct: 83  GSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAVTRTLLEADASRARREELVDKLA 140

Query: 141 AALILQEVLD 150
           A+ ILQ  +D
Sbjct: 141 ASYILQGAID 150


>gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
           DSM 12444]
 gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase
 gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 155

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 2/146 (1%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           ++  +L     +  +D GTK IG+A+ D   RFA     + R K      ++ + +    
Sbjct: 8   EMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERG 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +   +IGLPLNM+GSE PR    RA   N+ D  + +P + WDER TT +A++ +I+ + 
Sbjct: 68  VKGIVIGLPLNMDGSESPRSQGARAMARNLED--LGLPILLWDERWTTQAAERAMIEQDF 125

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
           SR KR +++DS AAALILQ  +D ++
Sbjct: 126 SRAKRAERIDSHAAALILQGAIDALA 151


>gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
 gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
          Length = 156

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%)

Query: 1   MSILLIEDLV--KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           MSIL  +     ++L     +  +D+GTK IG+A+ D G   A P   + R K ++  + 
Sbjct: 1   MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L +F+  + +   +IGLPLN++GSE PR  ++RAF  N+ D  + +P +FWDER +T + 
Sbjct: 61  LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            + L++ + SR +R + VD +AA+ ILQ  +D
Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAID 150


>gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
 gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
          Length = 160

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 26  TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
           TK IG+A SDP RR A     + RK  T  A  LL+         F++GLPLNM+GSEGP
Sbjct: 28  TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87

Query: 86  RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
           R  STRAF  N+  +   +P   WDERL+T + ++ LI  +VSR KR + +D  AA  IL
Sbjct: 88  RAQSTRAFARNLA-KLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146

Query: 146 QEVLDRISFLESSK 159
           Q  LDR++ L  ++
Sbjct: 147 QGALDRLAALRRAE 160


>gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
 gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase
 gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
          Length = 151

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D   +L     +A +D+GT+ IG+A+ D G   A P   ++R K +  A +L + +  + 
Sbjct: 8   DFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLRALVAAQL 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +   +IGLPLN++GS+ PR  S RAF  N+      +P + WDER +T +  + L+D + 
Sbjct: 68  VKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTRTLLDADA 125

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           SR +R + VD +AAA ILQ  +D
Sbjct: 126 SRARRAELVDKLAAAYILQGAID 148


>gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
 gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
          Length = 168

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 95/151 (62%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I    DL + L P   +  +D GTK IG+A+SD   R A P   + R+K ++ A E+L
Sbjct: 1   MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + + + NI  F++GLPLNM+G+EGPR  STR     ++ R   +P VF DER++T + ++
Sbjct: 61  ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLRH-DLPTVFQDERMSTQAVER 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
            +I + +++R +R + +DS AAA ILQ  LD
Sbjct: 120 AMISEADLTRGQRKKSIDSAAAAWILQAALD 150


>gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
 gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
          Length = 156

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           +D +  +  N  I  ID G K IGL++SDP ++ A P   +V KK  Q   EL + I   
Sbjct: 10  KDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELNNIIREY 69

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            I   +IG P+NM+G+ GPR  S R F  N I +   +P   WDERL++  A  ++ D++
Sbjct: 70  EIKGIVIGNPINMDGTSGPRSQSARDFAQN-ISKNTKLPITLWDERLSSEGAFNLMGDLD 128

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           ++  K+ + +D  AAA ILQ  LD
Sbjct: 129 INSSKKSKNLDQHAAAFILQGYLD 152


>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
           13941]
 gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
           13941]
          Length = 146

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 93/141 (65%), Gaps = 5/141 (3%)

Query: 13  LKPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIA 69
           +K ++P  + ++D+G +RIG+A+SDP R  A P    +R K   TAL+ + S I   ++A
Sbjct: 1   MKIDEPGRVMALDVGEQRIGVALSDPTRTLATPL-TTIRAKPRATALKRIASLIREHDVA 59

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           A ++GLPL M+G  GP+    + FV  +  R + +P  F DERLTTV+A++++ID+ +  
Sbjct: 60  ALVVGLPLTMSGDVGPQAALVQQFVEEL-RRAIAIPLTFVDERLTTVAAERMMIDLKLKP 118

Query: 130 KKRIQKVDSIAAALILQEVLD 150
           ++R  ++D +AA++ILQ+ LD
Sbjct: 119 EQRKARIDEVAASIILQDFLD 139


>gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58]
 gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58]
          Length = 169

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GTK IGLA+ D     A P   + R K  +  + L +FI  + +   +IGLPLN++
Sbjct: 35  GMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIGLAAFIDQQQVKGVVIGLPLNLD 94

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS  PR  ++RAF HN+ D  + +P + WDER +T +  + L++ + SR +R + VD +A
Sbjct: 95  GSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAVTRTLLEADASRARRDELVDKLA 152

Query: 141 AALILQEVLD 150
           A+ ILQ  +D
Sbjct: 153 ASYILQGAID 162


>gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
           12261]
 gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
           12261]
          Length = 138

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G KRIG+A+SDP   FA    F+   K  +  L+L   + + N+   +IG PL 
Sbjct: 4   ILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGNPLR 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            NG+ GP     +     +  R  ++  V WDER TT  AQQ+L++ NVSRKKR +KVD 
Sbjct: 62  TNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEKVDQ 121

Query: 139 IAAALILQEVLD 150
           +AAALILQ  LD
Sbjct: 122 LAAALILQNYLD 133


>gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
          Length = 163

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 4/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           +A +D+GTK IGLA+ D     A P   + RKK T   LELL  F+  + +   +IGLPL
Sbjct: 29  LAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFT-LDLELLRQFVEKQQVKGLVIGLPL 87

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N++GS+ PR  S RAF  N+    + +P + WDER +T +  + L++ + SR +R + VD
Sbjct: 88  NLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADASRARRSEVVD 145

Query: 138 SIAAALILQEVLD 150
            +AAA ILQ  +D
Sbjct: 146 KMAAAYILQGAID 158


>gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase
 gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 149

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SD     A     + R ++      L   + T  +   + GLP N
Sbjct: 3   IMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR    R F  +++++K+ +P  +WDERLTTV+AQ+ LI  ++SR KR Q VD 
Sbjct: 63  MNGTYGPRAEGIRKF-GSLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVVDK 121

Query: 139 IAAALILQEVLDRISFLESSK 159
           +AA LILQ  +D  + L + +
Sbjct: 122 LAAVLILQNYMDAKAHLAAKE 142


>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 179

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           +A +D+GTK IGLA+ D     A P   + RKK T   LELL  F+  + +   +IGLPL
Sbjct: 45  LAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFT-LDLELLRQFVEKQQVKGLVIGLPL 103

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N++GS+ PR  S RAF  N+    + +P + WDER +T +  + L++ + SR +R + VD
Sbjct: 104 NLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADASRARRSEVVD 161

Query: 138 SIAAALILQEVLDRISFL 155
            +AAA ILQ  +D  +  
Sbjct: 162 KMAAAYILQGAIDSFAMF 179


>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
           20745]
 gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
           20745]
          Length = 143

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 3/142 (2%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  S +P + + ++D+G +R+G+A+SD     A P   +  K+       L++ I   + 
Sbjct: 1   MASSSQPGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD--RLVALIERYDP 58

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              IIGLPL M+G EGP+  +TRAF   +  R V  P +FWDERLTT  A Q LI+    
Sbjct: 59  ERIIIGLPLGMSGREGPQAAATRAFAQQLRGR-VDRPIIFWDERLTTFMADQSLIEAGHR 117

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R +R Q VD++AAALILQ  LD
Sbjct: 118 RARRKQHVDAVAAALILQSYLD 139


>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 156

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           D  K +     +  ID G + +G+AI DP    A P   +  KK+     EL   I   N
Sbjct: 11  DFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDKIIIENN 70

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++G P+NM+G+EGPR  ST+ FV N+I +  ++P   WDERL++V A + + D+ +
Sbjct: 71  IKGIVVGHPINMDGTEGPRSQSTKDFVKNII-KHTHLPVTLWDERLSSVGAFKSMQDLGI 129

Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
           +   +  K+D  +AA ILQ  +D +
Sbjct: 130 NSSSKKDKLDENSAAFILQGFIDYL 154


>gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 153

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +  I +L  +L+P Q +  ID G K IG+A+SD     A P   + R+K++  A E+ 
Sbjct: 1   MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                 ++ A + GLPL+++GS GP   + R ++ N + ++V +P   WDERL++ +  +
Sbjct: 61  ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWMMN-LSQQVGLPAAMWDERLSSSAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +LI D++++R++R Q VD +AAA ILQ  LD
Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150


>gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1]
          Length = 149

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 13/143 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA----- 70
           I  +D GTK +G+A+SDP +  A P   + RK   K+ QT L  +  I  E  AA     
Sbjct: 3   ILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQT-LARIEAILEEYGAAGERDR 61

Query: 71  ---FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               ++G P NMN SEG R  +T+AF  ++ +R+  +  V WDERLTTV A++IL+D  V
Sbjct: 62  IELIVLGYPKNMNNSEGDRCEATQAFKEDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
            R+ R   +D +AAA+ILQ  LD
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLD 143


>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
 gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
          Length = 175

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K  G+A+SDP    A     +VRK   K+ QT   +   I    I A ++G 
Sbjct: 38  IMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 97

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T +F   M++R+   P + WDERLTT++A+++L++  V R+ R   
Sbjct: 98  PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 156

Query: 136 VDSIAAALILQEVLD 150
           +D +AAALILQ  LD
Sbjct: 157 IDKVAAALILQGYLD 171


>gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 139

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A  +  + RKK +     LL  I   ++   ++GLP N
Sbjct: 4   IMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV +++ ++  V  V+ DER+TT+ ++ +LIDM V R+ R Q +D 
Sbjct: 64  MNNTIGPQSMKVMSFV-DLLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQYIDK 122

Query: 139 IAAALILQEVLDR 151
           IAA  ILQ  LDR
Sbjct: 123 IAATFILQTYLDR 135


>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
           saccharolyticum K10]
          Length = 140

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K  G+A+SDP    A     +VRK   K+ QT   +   I    I A ++G 
Sbjct: 3   IMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T +F   M++R+   P + WDERLTT++A+++L++  V R+ R   
Sbjct: 63  PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AAALILQ  LD
Sbjct: 122 IDKVAAALILQGYLD 136


>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SS3/4]
          Length = 144

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SD     A     + RK   K+ +T   +   I    +   ++GL
Sbjct: 3   ILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+ +EG RV  T+AF   M++R+  +P  +WDERLTTV+A+QIL++  V R+ R   
Sbjct: 63  PKNMDNTEGERVEKTKAF-GEMLERRTGLPVHYWDERLTTVAAEQILMESGVRRENRKAV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 122 IDKVAAGLILQGYLD 136


>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
 gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 141

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLG KRIG+A SDP    A     L RK + +    L        +   ++GLPLN
Sbjct: 3   IMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+   T+ F    +   + +P  FWDERL++ SA+++L++ ++SRK+R + +D 
Sbjct: 63  MNGTMGPKALETQEFAR-ALQEALKIPVDFWDERLSSKSAERVLLEADLSRKRRKELIDK 121

Query: 139 IAAALILQEVLD 150
           IAA  ILQ  LD
Sbjct: 122 IAAVHILQAYLD 133


>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 138

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 1/136 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G +RIG+A+SD     A     + R+K       +   +    +   ++GLP N
Sbjct: 3   IMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR     AF  ++   K+ +P   WDERLTTVSAQ+ L+D +VSRKKR   VD 
Sbjct: 63  MNGTIGPRGEICMAFAEDL-RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVDK 121

Query: 139 IAAALILQEVLDRISF 154
           +AA+LILQ  LD  S 
Sbjct: 122 MAASLILQNYLDSKSI 137


>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
 gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
          Length = 162

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D GTKR+G+AIS   +  A P     R+ + Q    LLS IT       ++GLP++M+
Sbjct: 23  GLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRCKGLVVGLPVHMS 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG +    R F  N + +   +P  +WDER ++ +A++IL+++N+SR KR   +D +A
Sbjct: 83  GDEGQKAKEARQF-GNWVSQFAEIPVRYWDERYSSATAEEILVNLNMSRNKRKAYLDKLA 141

Query: 141 AALILQEVLD 150
           A +ILQ  LD
Sbjct: 142 AQIILQSFLD 151


>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
           39073]
 gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
 gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
           39073]
          Length = 140

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+GTK IG+A+SDP    A     + R+ +      L   +    +   ++GLP N
Sbjct: 3   IMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNGS GP+  + RAF  ++   +V +P  F+DERLTTV+A ++L++ ++SR++R Q +D 
Sbjct: 63  MNGSLGPQAEAVRAFARHL-QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVIDQ 121

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LDR+ 
Sbjct: 122 VAATYILQGYLDRLG 136


>gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
 gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
          Length = 144

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 4/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + ++DLGT R+G+A+SDP RRFA P   L  ++   Q   EL   + T  +   ++GLP 
Sbjct: 6   VLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENWIQRVREL---VVTHQVTLVLVGLPT 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G+ GP V   R +   +      VP  F+DER TT  AQQ L+  +VSRK R Q+VD
Sbjct: 63  RTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQRVD 122

Query: 138 SIAAALILQEVLD 150
            +AAA++LQ  LD
Sbjct: 123 KVAAAVLLQGFLD 135


>gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 162

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 1/145 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           L  +L P  P+ +ID GTK +G+A+S+  R    P   + R+K TQ A  LL+       
Sbjct: 4   LDPALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERAC 63

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              I+GLPL+M+G +G R  S+R+FV N++ R   +P  + DERL+T +A + LI+  V 
Sbjct: 64  VGLIVGLPLHMHGGDGRRAQSSRSFVTNLL-RLRDLPVAYQDERLSTFAATESLIEAGVK 122

Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
              R   VD+ AAA+IL+  + RI+
Sbjct: 123 PSHRKDFVDAQAAAVILESAIGRIN 147


>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SM4/1]
          Length = 140

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I   D G+K  G+A+SDP    A     +VRK   K+ QT   +   I    I A ++G 
Sbjct: 3   IMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T +F   M++R+   P + WDERLTT++A+++L++  V R+ R   
Sbjct: 63  PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AAALILQ  LD
Sbjct: 122 IDKVAAALILQGYLD 136


>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
 gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
 gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
          Length = 140

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G +RIG+AISD     A  +  ++RK   +    +   I    +   I+G+P N
Sbjct: 3   IMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS GPR   TR F+ + + + +  P   WDERL+TV A+++LI+ +VSRKKR   +D 
Sbjct: 63  MDGSLGPRAEKTRDFI-DFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVIDK 121

Query: 139 IAAALILQEVLD 150
           +AA++ILQ  L+
Sbjct: 122 VAASIILQGYLN 133


>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
 gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
          Length = 149

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 11/142 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITT-------ENI 68
           +  +D GTK +G+A+SDP    A P   + RK   K+ QT   + + I         E I
Sbjct: 3   VLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEKI 62

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++G P NMN +EG R  +T +F  N ++R+  +  V WDERLTTV A++IL+D  V 
Sbjct: 63  EKIVLGYPKNMNNTEGDRCEATVSF-KNDLERRTGLEVVLWDERLTTVEAERILMDSGVR 121

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R+ R   +D +AAA+ILQ  LD
Sbjct: 122 RENRKTYIDKMAAAVILQNYLD 143


>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
 gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
           100599]
          Length = 138

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G K IG+A+SD     A     + R+   +    L   ++   I AF++GLP N
Sbjct: 4   LMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR    +AF   +++ +  +P   WDERLTT++A+++LI  +VSR+KR   +D 
Sbjct: 64  MNGTIGPRAEMCQAF-GKLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVIDK 122

Query: 139 IAAALILQEVLD 150
           +AA LILQ  LD
Sbjct: 123 MAATLILQGYLD 134


>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
 gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
 gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
          Length = 154

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I  +DLG K+IG+A+SDP    A     +  K   + ++E +S  +    +   ++GLP 
Sbjct: 3   IMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLPR 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS GPR    RAF   +    + +P   WDER+TT+ A+++LI+ ++SR +R Q +D
Sbjct: 63  NMNGSFGPRAERARAFAGCLAG-ALNLPVELWDERMTTLEAEKLLIEADLSRARRRQVID 121

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 122 KMAAVLILQSFLD 134


>gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514]
 gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514]
          Length = 138

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKRIGLAISD     A P  F++ +      + L   I  + +   ++G+P N
Sbjct: 4   ILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPRN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS GP     + FV  + D  V +P   WDERLT+  A + LI  +V R KR +KVD 
Sbjct: 64  MDGSYGPAALKVQEFVTVLKD-SVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEKVDK 122

Query: 139 IAAALILQEVLD 150
            AAA++LQ  LD
Sbjct: 123 TAAAILLQSYLD 134


>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
 gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
          Length = 136

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G KR+G+A+SD     A P   L +    +  +EL  +I   ++   I+G+P N
Sbjct: 3   ILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPYN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS G R   T+AF+ N +   + +P    DERLTT  A+ IL++ ++SR +R   +D 
Sbjct: 63  MDGSRGKRAEITQAFI-NFLKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVIDK 121

Query: 139 IAAALILQEVLD 150
           +AAALILQ  LD
Sbjct: 122 LAAALILQSYLD 133


>gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
 gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
          Length = 137

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  +D G +RIG+AISD     A     + R++     + + + +    +   ++GLP
Sbjct: 2   KKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR      F  N +   + +P   WDERL+TVSA++ L++ +VSRKKR Q V
Sbjct: 62  KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120

Query: 137 DSIAAALILQEVLD 150
           D +AA+LILQ  LD
Sbjct: 121 DKMAASLILQNYLD 134


>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
           20731]
 gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
           20731]
          Length = 139

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLGT+ IG+++SD     A     + RK +      L   +  E +  F++G P N
Sbjct: 3   IMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNGS G R  ++  F   + +R   +P V WDERL+TV+A+++LI+ ++ RKKR + +D 
Sbjct: 63  MNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIIDM 122

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 123 MAAVVILQNYLD 134


>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
 gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
          Length = 142

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 79/136 (58%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D+G++ IG+A+SD     A     +      +  + L       N+  F+IG+PLN
Sbjct: 3   IMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG++G R   T  F   +      +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +D 
Sbjct: 63  MNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVIDK 122

Query: 139 IAAALILQEVLDRISF 154
           +AA +IL+  L  +SF
Sbjct: 123 MAAVVILEGYLQHLSF 138


>gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
 gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
          Length = 148

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G + IG+A+SDP    A     + R+ + +    L + I  ENI   ++GLP NMN
Sbjct: 13  ALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGLPKNMN 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + GP+     +FV  + D  V   F    V  DERLTTVSA++ILI+ N+SRKKR + +
Sbjct: 73  NTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKKRKKVI 132

Query: 137 DSIAAALILQEVLDR 151
           D +AA  ILQ  LDR
Sbjct: 133 DKVAATYILQSYLDR 147


>gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
 gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
          Length = 154

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L + DLV +L  +  +  ID G K++GLA+SD  R  A P   + R K+ Q A  + 
Sbjct: 1   MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
              T   I   ++G+PL+++GS GP   ++R +   + + +  +P   WDERL++ +  +
Sbjct: 61  DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSE-QTGLPVCQWDERLSSSAVNR 119

Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
           +LID  ++SR +R + VD +AAA ILQ  LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSL 152


>gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
 gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
          Length = 137

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  +D G +RIG+AISD     A     + R++       + + +    +   ++GLP
Sbjct: 2   KKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR      F  N +   + +P   WDERL+TVSA++ L++ +VSRKKR Q V
Sbjct: 62  KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120

Query: 137 DSIAAALILQEVLD 150
           D +AA+LILQ  LD
Sbjct: 121 DKMAASLILQNYLD 134


>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 150

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
           N  I  +D G+K +G+A+ DP    A     + RK   K+ QT   + + I    I   +
Sbjct: 2   NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMN + G R   T  F    ++R+  +P V WDERLTTV+A ++LI+  V R+ R
Sbjct: 62  LGYPKNMNNTLGERAVKTEEF-KTSLERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120

Query: 133 IQKVDSIAAALILQEVLDRIS 153
            + VD IAAA+ILQ  LD +S
Sbjct: 121 KESVDQIAAAMILQGYLDSLS 141


>gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
 gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase
 gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
          Length = 141

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 86/136 (63%), Gaps = 9/136 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPL 77
           + ++D+G +RIG+A+SDP R  A P    +R     TAL+ +L+ I    + A ++GLPL
Sbjct: 8   VMALDVGERRIGVALSDPTRMLASPL-TTIRAVPRSTALKRILTLIRDYQVTALVVGLPL 66

Query: 78  NMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            MNG  GP+    + FV  +   ID    +P  F DERLTTV+A++++ID+ +  ++R  
Sbjct: 67  TMNGDIGPQATLVQQFVDELRPLID----IPIFFVDERLTTVAAERMMIDLKIKPEQRRA 122

Query: 135 KVDSIAAALILQEVLD 150
           ++D +AA++ILQ+ LD
Sbjct: 123 RIDEVAASIILQDFLD 138


>gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
 gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
          Length = 138

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + +K  Q   E +  +  E  +   ++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63  KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKLAAVMILQSYLD 135


>gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 136

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D G + IG+A+SD     A     + RKK  +    +   I    ++  ++GLP NMN
Sbjct: 5   GLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLPKNMN 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ GPR    + F   ++ R+  +P   WDERLTTVSA + L++ +VSRKKR Q VD +A
Sbjct: 65  GTIGPRGELCQEFA-GLLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVVDKMA 123

Query: 141 AALILQEVLD 150
           AALILQ  +D
Sbjct: 124 AALILQGYMD 133


>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 151

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+AISDP    A     + RK   K+ +T   + + +    +   ++G 
Sbjct: 3   IMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   +  F   M++R+  +P   WDERLTTV A++ LI+ NV R+ R + 
Sbjct: 63  PKNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKY 121

Query: 136 VDSIAAALILQEVLDRISFLESS 158
           VD IAA  ILQ  LD + F + S
Sbjct: 122 VDKIAAVFILQGYLDSVYFRQKS 144


>gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
 gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745]
 gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
 gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745]
          Length = 139

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D+G++ IG+A SD     A     + R  + +    L   I+   +   ++G+P N
Sbjct: 3   IMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG++G R   T  FV  M +  + +P  +WDERL+TV A++ LI  +VSRKKR   +D 
Sbjct: 63  MNGTKGERAEKTEEFVAKMKE-VIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDK 121

Query: 139 IAAALILQEVLDRISF 154
           +AA +ILQ  LDR+ F
Sbjct: 122 MAAVVILQGYLDRLQF 137


>gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
 gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
          Length = 139

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A+    + RK  +     L   I   ++   ++GLP N
Sbjct: 4   IMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV ++I ++V +  V+ DER+TT+ ++ +LIDM+V R+ R + +D 
Sbjct: 64  MNNTIGPQAMRVMSFV-DLIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKYIDK 122

Query: 139 IAAALILQEVLDR 151
           IAA  ILQ  LDR
Sbjct: 123 IAATFILQTYLDR 135


>gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
           2228]
          Length = 135

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G KR+G+A+SD     A P   L      +  +E+  +I   ++   I+G+P N
Sbjct: 3   ILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPYN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++GS G R   T+AF+ N ++ ++ +P    DERLTT  AQ IL++ +VSR+ R + +D 
Sbjct: 63  LDGSRGKRAEITQAFI-NFLNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVIDK 121

Query: 139 IAAALILQEVLDRI 152
           +AA+LILQ  LD +
Sbjct: 122 LAASLILQSYLDSL 135


>gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
 gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
 gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 139

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 1/136 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D+G++ IG+A SD     A     + R  + +    L   I    +   ++G+P N
Sbjct: 3   IMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG++G R   T  FV  M +  + +P  +WDERL+TV A++ LI  +VSRKKR   +D 
Sbjct: 63  MNGTKGERAEKTEEFVEKMKE-VIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVIDK 121

Query: 139 IAAALILQEVLDRISF 154
           +AA +ILQ  LDR+ F
Sbjct: 122 MAAVVILQGYLDRLQF 137


>gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
 gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
          Length = 137

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  +D G +RIG+AISD     A     + R++       + + +    +   ++GLP
Sbjct: 2   KKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR      F  N +   + +P   WDERL+TVSA++ L++ +VSRKKR Q V
Sbjct: 62  KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120

Query: 137 DSIAAALILQEVLD 150
           D +AA+LILQ  LD
Sbjct: 121 DKMAASLILQNYLD 134


>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
 gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
          Length = 165

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
           N  I  +D GTK +G+A+SD     A P   + RK   K+ QT   + S I        +
Sbjct: 20  NMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERIV 79

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMN + G R  +T  F  ++ +R+  +  + WDERL+TV A++IL+D  V R+ R
Sbjct: 80  LGYPKNMNNTIGERAEATEQFKEDL-ERRTGLEVILWDERLSTVEAERILMDTGVRRENR 138

Query: 133 IQKVDSIAAALILQEVLD 150
            Q VD +AAA+ILQ  LD
Sbjct: 139 KQYVDKMAAAVILQNYLD 156


>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
           555]
 gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
 gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
 gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
 gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
           555]
 gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 137

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A     + RK   +   EL +      +   + GLP N
Sbjct: 3   ILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F  N+I+  + +P   WDERLTTV+A + +++ ++SR KR + VD 
Sbjct: 63  MNGTLGPQSEKVLKFC-NIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LDRIS
Sbjct: 122 MAATYILQGYLDRIS 136


>gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 140

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G++ IG+A SD     A     + R  +      L   I+   +   ++G+P N
Sbjct: 3   IMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           MNG++G R   T  FV  M   ID    +P  FWDERL+TV A++ LI  +VSRKKR   
Sbjct: 63  MNGTKGERAEKTEEFVEKMKAVID----LPVTFWDERLSTVMAERQLIAADVSRKKRKGV 118

Query: 136 VDSIAAALILQEVLDRISFLES 157
           +D +AA +ILQ  LDR+ F +S
Sbjct: 119 IDKMAAVVILQGYLDRLQFSKS 140


>gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
 gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
          Length = 144

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 88/139 (63%), Gaps = 4/139 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISD-PGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFI 72
           PN  +  +D+G+K +G+A+SD  G          + +K ++   + ++  +    +   +
Sbjct: 2   PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKK 131
           IGLP NMN +EGPRV ++R +  + +++++ +P VF DERLTT+ A+++L++  NVSRKK
Sbjct: 62  IGLPKNMNNTEGPRVEASRRYGAS-LEKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           R Q +D +AA +ILQ  LD
Sbjct: 121 RKQVIDMLAAVMILQNYLD 139


>gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 140

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G++ IG+A SD     A     + R  +      L   I+   +   ++G+P N
Sbjct: 3   IMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           MNG++G R   T  FV  M   ID    +P  FWDERL+TV A++ LI  +VSRKKR   
Sbjct: 63  MNGTKGDRAEKTEEFVEKMKAVID----LPVTFWDERLSTVMAERQLIAADVSRKKRKGV 118

Query: 136 VDSIAAALILQEVLDRISFLES 157
           +D +AA +ILQ  LDR+ F +S
Sbjct: 119 IDKMAAVVILQGYLDRLQFSKS 140


>gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
 gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
 gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
 gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
          Length = 136

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 1/134 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G++ IG+A SD     A     + R  + +    L   I+   +   ++G+P NMN
Sbjct: 2   SLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNMN 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G++G R   T  FV  M +  + +P  +WDERL+TV A++ LI  +VSRKKR   +D +A
Sbjct: 62  GTKGERAEKTEEFVAKMKE-VIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKMA 120

Query: 141 AALILQEVLDRISF 154
           A +ILQ  LDR+ F
Sbjct: 121 AVVILQGYLDRLQF 134


>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
 gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
 gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
          Length = 142

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 3/135 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTEN-IAAFIIGLPLN 78
            +D+GTK IG+AISD     A   P + R +       E L+ +  EN +   +IG P N
Sbjct: 5   GLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G     +  F   + +++  V  V WDERLTT +AQ++LID +VSRKKR + VD 
Sbjct: 65  MNGTVGESATRSETFARTL-EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVDK 123

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LDR S
Sbjct: 124 MAAVFILQGYLDRQS 138


>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
           2020]
 gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
           2020]
          Length = 139

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP    A     +   K+ +   E     L   +    +  F++
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEDKKEFGLARLEELVNQYKVDKFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN S GPRV +++A+  N+I  +  +P  + DERLTTV A+++LI+  ++SR KR
Sbjct: 60  GLPKNMNNSSGPRVEASQAY-GNLIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDRI
Sbjct: 119 KKVIDKLAAQLILQNYLDRI 138


>gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 148

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77
            +D G+K +G+AISDP    A     + RK   K+ +T   + + +    +   ++G P 
Sbjct: 2   GLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + G R   +  F   M++R+  +P   WDERLTTV A++ LI+ NV R+ R + VD
Sbjct: 62  NMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYVD 120

Query: 138 SIAAALILQEVLDRISFLESS 158
            IAA  ILQ  LD + F + S
Sbjct: 121 KIAAVFILQGYLDSVYFRQKS 141


>gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
 gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
          Length = 156

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G+K IGLA+SD G   AH R  L R+     +  +L+  +   + A ++GLPL 
Sbjct: 3   VLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLPLE 62

Query: 79  MNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           ++GSEG R    R F+  +     + +  +P   WDER +T +A++ L++ +VSR KR Q
Sbjct: 63  LDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKRKQ 122

Query: 135 KVDSIAAALILQEVLD 150
            +D++AA  ILQ  LD
Sbjct: 123 NIDAVAAQFILQGWLD 138


>gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
 gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
          Length = 150

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTK IG+A+SD     A     + R  +      L         +  ++GLPLNM+
Sbjct: 5   GLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLPLNMD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEGPR  ++R F  + + + +++P  FWDERL+TV+A++ L++ +++R KR Q +D +A
Sbjct: 65  GSEGPRAEASRKFA-DALGQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVIDQMA 123

Query: 141 AALILQEVLD 150
           A  ILQ  LD
Sbjct: 124 AQFILQGWLD 133


>gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
           N1-067]
 gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL
           S4-171]
          Length = 138

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + +K  Q   + +  +  E  +   ++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63  KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKLAAVMILQSYLD 135


>gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
           ATCC 9812]
 gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
           ATCC 9812]
          Length = 139

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + ++  +   E L   +   N+  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN +EGPRV +++A+  + I     +P  + DERLTTV A+++L++  +VSR KR + 
Sbjct: 63  KNMNNTEGPRVEASKAY-GDQIKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA LILQ  LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138


>gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 143

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76
           I  +D+G++ +G+A+SDP    A     + + +   +  LE L  I  +  A   ++GLP
Sbjct: 3   ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
            NMN SEGPR  ++R +   M+  K  +P  F DERLTTV A+++LI+  N+SRKKR Q 
Sbjct: 63  KNMNNSEGPRAEASRLYAK-MVQDKFNLPIDFQDERLTTVQAERMLIEEANISRKKRKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDKIAAEFILQNYLD 136


>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
           WAL-14163]
 gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
           WAL-14673]
 gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
           WAL-14163]
 gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
           WAL-14673]
          Length = 163

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           +  +D G+K  G+A+SDP    A     + R+   K+ +T   +   I    I   ++G 
Sbjct: 17  VLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCARIEELIREYQIETIVLGY 76

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G RV  T AF   M++R+  +  + WDERLTT +A+QILI+  V R+ R   
Sbjct: 77  PKNMNNTSGERVEKTLAF-KEMLERRTGLSVILWDERLTTTAAEQILIESGVRRENRKAV 135

Query: 136 VDSIAAALILQEVLDRISF 154
           +D +AA+LILQ  LD ++ 
Sbjct: 136 IDKVAASLILQGYLDSLAI 154


>gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-12]
          Length = 154

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L + DLV +L  +  +  ID G K++GLA+SD  R  A P   + R K+ Q A  + 
Sbjct: 1   MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                  I   ++G+PL+++GS GP   ++R +   + + +  +P   WDERL++ +  +
Sbjct: 61  DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSE-QTGLPVCQWDERLSSSAVNR 119

Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
           +LID  ++SR +R + VD +AAA ILQ  LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSL 152


>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
 gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
           DSM 5159]
          Length = 161

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 5/131 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +D+G +R+G+AISD     A P   L    + +  LE L+  I+  +    ++GLP+ M
Sbjct: 11  GLDVGGRRVGVAISDEMGMIASP---LATIDLDRDGLERLVELISRYDPVLIVVGLPVTM 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G EG +   T+AF   + +R +  P VFWDERLT+ +A+++L D  V RK+R + VD++
Sbjct: 68  RGREGSQAVETKAFAARLAER-IDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELVDAV 126

Query: 140 AAALILQEVLD 150
           AAAL+LQ  LD
Sbjct: 127 AAALLLQSYLD 137


>gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 135

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP G          + +K  Q   + +  +  E  +   ++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D 
Sbjct: 62  MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVIDK 120

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 121 LAAVMILQSYLD 132


>gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622]
 gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase
 gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK
           1622]
          Length = 151

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
            +DLGTK IG+A+SD G          VR+   +  L  L+ + +E+ +   ++GLPLNM
Sbjct: 5   GLDLGTKTIGVAVSD-GLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPLNM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GSEGPR  ++R F  + + + + V    WDERL+TV+A + L++ +VSR +R + +D +
Sbjct: 64  DGSEGPRAEASRKFA-DTLAQSLGVTVELWDERLSTVAATRTLLEADVSRARRREVIDQV 122

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 123 AAQFILQGWLD 133


>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
 gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
          Length = 139

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLG K IG+A+SDP    A     + RKK +    +L+  I  + +   IIGLP N
Sbjct: 4   IMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV +++ +   +   + DER+TT+ + Q+L+DMNV+ K R + VD 
Sbjct: 64  MNNTLGPQAMKVISFV-DLLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKYVDK 122

Query: 139 IAAALILQEVLD 150
           IAA+ ILQ  LD
Sbjct: 123 IAASFILQTYLD 134


>gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7]
          Length = 155

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SDP    A     + RK   K+ +T   + + I        ++G 
Sbjct: 5   IIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIVLGY 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN +EG RV  T AF    ++R+  +  + WDER++TV+++++L++ NV R+ R   
Sbjct: 65  PKNMNDTEGERVEKTLAF-KEALERRTGLEVILWDERMSTVASERVLMEGNVRREDRKTY 123

Query: 136 VDSIAAALILQEVLDRISFLES 157
           +D +AAA ILQ  LD  SF E+
Sbjct: 124 IDKMAAAFILQGYLDYQSFSEN 145


>gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 140

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++DLG +RIGLAISDP R  A   P LVR ++      L   +    +   ++G P+N
Sbjct: 8   ILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLLGNPIN 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M G+EG +    R F   M +++  VP   WDERLT+V A ++L    +S +KR   VD 
Sbjct: 68  MKGTEGRQSGWVREFATAM-EKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRAAAVDK 126

Query: 139 IAAALILQEVLD 150
           ++A ++LQ  LD
Sbjct: 127 LSAVILLQSYLD 138


>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
 gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
          Length = 138

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLP 76
           I  +D+GTK IG+A+SDP    A       RKK  +      ++  +  E     ++GLP
Sbjct: 3   IIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP     +AF  ++      +P + WDERLTT +A++ LI  +VSRKKR   +
Sbjct: 63  KNMNGTIGPSGELCQAFAESL-KEATGLPVILWDERLTTAAAEKTLISADVSRKKRKNVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 122 DKMAAVFILQGYLD 135


>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
           DSM 15981]
 gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
           DSM 15981]
          Length = 151

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+ DP    A     +VRK   K+ +T   +   I    I   ++G 
Sbjct: 3   IMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R           ++R+  +P + WDERLTTV+A ++L++  V R+ R + 
Sbjct: 63  PKNMNNTVGERAQKAEEL-KAALERRTGLPVILWDERLTTVAADRVLMESGVRREHRKES 121

Query: 136 VDSIAAALILQEVLDRISF 154
           VD IAAA+ILQ  LD +SF
Sbjct: 122 VDQIAAAMILQGYLDNLSF 140


>gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 135

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP G          + +K  Q   + +  +  E  +   ++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D 
Sbjct: 62  MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 121 LAAVMILQSYLD 132


>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
           cellulolyticum H10]
 gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
 gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
          Length = 142

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 2/136 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  ID G  RIG+AISDP    A     +  K   + A+  LS I  E ++   +IG P+
Sbjct: 3   ILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYPI 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++GPR   T  F+  + D   +   + WDERLTTVSA + + ++ +   K+   VD
Sbjct: 63  NMNGTKGPRTERTEEFIKKISDLGQF-NIIKWDERLTTVSAHRTMNELGIKASKKKGIVD 121

Query: 138 SIAAALILQEVLDRIS 153
           +++A LILQ  LDRI+
Sbjct: 122 TMSAVLILQGYLDRIA 137


>gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter
           oxydans 621H]
 gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase
 gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter
           oxydans 621H]
          Length = 160

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 2/144 (1%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           DL   L+  Q +  +D G+K IG+A++D     A P   L R+K+ + A EL   + T++
Sbjct: 8   DLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELAKIVRTQD 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMN 126
           + A ++GLPL+++GS GP   +   +    +  K+ +P   WDERL++ +  + LI D +
Sbjct: 68  VGALVVGLPLSLDGSFGPAARAASDWTQ-ALSEKLGIPAGLWDERLSSSAVNRFLIKDAD 126

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           ++R +R + VD +AAA +LQ  LD
Sbjct: 127 MTRGRRAEVVDKMAAAYMLQGWLD 150


>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
          Length = 138

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 84/138 (60%), Gaps = 11/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA------FI 72
           I  +D+G+K +G+AISD           L   K+ + A++ L F   + I A       +
Sbjct: 3   ILGLDVGSKTVGVAISD---EMGWTAQGLETIKIDE-AIKNLGFKRLKQIIAEYKPEKVV 58

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP NMNGS GPR  +++ +   M+  K  +P ++WDERL+TV+A++IL+  +VSRKKR
Sbjct: 59  VGLPKNMNGSIGPRGEASKHY-GEMLTAKTGLPVIYWDERLSTVAAERILLSADVSRKKR 117

Query: 133 IQKVDSIAAALILQEVLD 150
            Q +D +AA +ILQ  LD
Sbjct: 118 KQVIDKMAAVVILQGYLD 135


>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
 gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
          Length = 148

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q +  +D+G +RIG+A+SD     A P   +     +Q    +   +    +   ++GL
Sbjct: 3   EQRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL + G  GP+   TR+F   + +R+V +P + +DER TT  A+Q+L +M V  +KR Q+
Sbjct: 63  PLTLRGEIGPQAEQTRSFAQEL-ERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQ 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA++ILQ+ LD I
Sbjct: 122 IDQVAASIILQDYLDHI 138


>gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch
           sediment']
          Length = 144

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q    ID GTKRIG+AISD     A P P L           +   +    I   ++GLP
Sbjct: 2   QRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP      AF    ++    V    WDERLT+++A+++LI+ ++SR KR ++V
Sbjct: 62  KNMNGTLGPSAERALAFA-GQLEEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRRV 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 121 DQMAAVLILQGFLDR 135


>gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
 gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Florida]
 gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
 gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Florida]
          Length = 164

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE    +L  ++ I  +D G K+ GLA+SD     A P    +R+ V Q   EL + +  
Sbjct: 13  IESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKR 72

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           E I A ++GLPL ++G EG      R+FV  +I +K  V     DER TT  A +    +
Sbjct: 73  EGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLI-KKSGVYVYLHDERFTTAMASRTTESL 131

Query: 126 NVSRKKRIQKVDS-IAAALILQEVLD 150
            + R+K  QKVD  I+AALILQ+VLD
Sbjct: 132 GL-RRKASQKVDDKISAALILQQVLD 156


>gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus
           amyloliquefaciens FZB42]
 gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7]
 gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase
 gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42]
 gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 138

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +DLGTK +G+A+SD  G          + +      L+ LS +  + N+   ++G P
Sbjct: 3   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138


>gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Mississippi]
 gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Puerto Rico]
 gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Virginia]
 gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase
          Length = 157

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE    +L  ++ I  +D G K+ GLA+SD     A P    +R+ V Q   EL + +  
Sbjct: 6   IESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKR 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           E I A ++GLPL ++G EG      R+FV  +I +K  V     DER TT  A +    +
Sbjct: 66  EGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLI-KKSGVYVYLHDERFTTAMASRTTESL 124

Query: 126 NVSRKKRIQKVDS-IAAALILQEVLD 150
            + R+K  QKVD  I+AALILQ+VLD
Sbjct: 125 GL-RRKASQKVDDKISAALILQQVLD 149


>gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
           YK9]
 gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
           YK9]
          Length = 138

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G + IG+A+SD     A     + R+       E+   +    +   ++GLP N
Sbjct: 3   IMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNGS GPR     AF   +  +K+ +P   WDERLTTVSA++ L++ +VSRKKR   VD 
Sbjct: 63  MNGSVGPRGEICIAFAEEL-QQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVVDK 121

Query: 139 IAAALILQEVLD 150
           +AA  ILQ  LD
Sbjct: 122 LAATFILQNYLD 133


>gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 143

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76
           I  +D+G++ +G+++SDP    A     + + +   +  L+ L  I  E  A + ++GLP
Sbjct: 3   ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
            NMN SEGPR  + R +   M++ +  +P  F DERLTTV A+++LI+  +VSRKKR Q 
Sbjct: 63  KNMNNSEGPRAEAARNYAK-MVEERFELPTDFQDERLTTVQAERMLIEEADVSRKKRKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDKIAAEFILQNYLD 136


>gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 171

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58
           M ++ ++ L + L     +  +D+G++ IGLA+SDP  R A P   + R   T  +    
Sbjct: 1   MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTV 116
           L S +   NI   +IG PL + G +G +    + F     M  R   + +V+WDERLT+V
Sbjct: 61  LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           +   ++  M+++ ++R   VD ++A  ILQ  LD +S +E+ 
Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162


>gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
           5501]
 gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
           5501]
          Length = 138

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G KRIG A SD     A  +  +      +   E+ S I   ++   ++GLP N
Sbjct: 4   ILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR   T  FV  +   ++  P + WDERL+T +A++ L+  +VSR KR   +D 
Sbjct: 64  MNGTLGPRAEKTLDFVEQL-KEEIEPPIITWDERLSTAAAERTLLKADVSRAKRKDVIDK 122

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 123 MAAVVILQSYLD 134


>gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 4b H7858]
 gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459]
 gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL J1-175]
 gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase
 gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase
 gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           1816]
          Length = 138

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63  KNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKLAAVMILQSYLD 135


>gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus
           amyloliquefaciens TA208]
 gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens
           LL3]
          Length = 138

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +DLGTK +G+A+SD  G          + +      L+ LS +  + N+   ++G P
Sbjct: 3   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGFLDSLN 138


>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
 gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
           8052]
          Length = 138

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLG+K IG+A+SDP    A     + R    +   E+  F    +    +IGLP N
Sbjct: 3   ILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP      AF   +I+ ++ V   FWDERLTTV+A + +++ ++SR KR + VD 
Sbjct: 63  MNGTIGPSGEIAMAF-GKVIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVDK 121

Query: 139 IAAALILQEVLDRIS 153
           +A+  ILQ  LD IS
Sbjct: 122 VASTYILQGYLDMIS 136


>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
 gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
          Length = 139

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+AISDP    A     +   K+ + A E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVDKFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN +EGPRV +++A+  N I     +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 60  GLPKNMNNTEGPRVEASKAY-GNKIKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
           14863]
 gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
 gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 144

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SD     A     + R+ + Q    L        +  +++G+P N
Sbjct: 3   IGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR   TRAF+  +      +P   WDERL+T++A+++L++ +VSR +R + +D 
Sbjct: 63  MNGTYGPRAELTRAFMERLAGHS-GLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDK 121

Query: 139 IAAALILQEVLD 150
           +AAA+ILQ  LD
Sbjct: 122 MAAAVILQGYLD 133


>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 138

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLGT+ IG+A+SD     A     + R         L   +  E + AF++G P N
Sbjct: 3   IMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R  ++ AF   +           WDERL+TV+A+++LID +++RKKR + +D 
Sbjct: 63  MNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVIDM 122

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 123 MAAVVILQNYLD 134


>gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua
           Clip11262]
 gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase
 gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262]
 gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
 gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
          Length = 138

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63  KNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKLAAVMILQSYLD 135


>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
           1_2_62CV]
 gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
           1_2_62CV]
          Length = 139

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 88/136 (64%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + ++  +   + LS +  E  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I++  ++P  + DERLTTV+A+++LI+  +VSRKKR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GAKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 15912]
          Length = 139

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + +   +  LE L+  +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   MI  K  +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GTMIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           EGD-e]
 gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland
           1988]
 gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL
           R2-561]
 gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           10403S]
 gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           J0161]
 gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL F2-515]
 gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
 gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase
 gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e]
 gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
           F2-208]
 gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
          Length = 138

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63  KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKLAAVMILQSYLD 135


>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
           2782]
 gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
           2782]
          Length = 142

 Score = 93.2 bits (230), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 2/136 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  ID G  RIG+AISDP    A     +  K+  + A+  LS I  E  +   +IG P+
Sbjct: 3   ILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYPI 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++GPR   T  F+  + D   +   + WDERLTTVSA + + ++ +   K+   VD
Sbjct: 63  NMNGTKGPRTERTEEFIKKISDFGEF-NIIKWDERLTTVSAHRTMNELGIKASKKKDIVD 121

Query: 138 SIAAALILQEVLDRIS 153
           +++A LILQ  LDR++
Sbjct: 122 TMSAVLILQGYLDRMA 137


>gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like
           [uncultured bacterium]
          Length = 161

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q + +ID G + +G+A+SD     + P  F +  K       L + I        ++G 
Sbjct: 11  GQRLLAIDYGDRFLGVAVSDIMWHISTPL-FPIDSKSCNAFQALGALIDQHACGGIVVGY 69

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+NMNGSEGP     R F   +      +P   +DERL+TV+A++ +++ ++SRKKR QK
Sbjct: 70  PINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKKRKQK 129

Query: 136 VDSIAAALILQEVLDRI 152
           VDS+AA+ +LQ  LD +
Sbjct: 130 VDSLAASYVLQGTLDYL 146


>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
 gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
 gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
          Length = 137

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A     + R  + +    L   I+  ++   ++G+P N
Sbjct: 3   IMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +     AF+   +  K+ +P   WDERL+TV+A+++LI  +VSR KR + +D 
Sbjct: 63  MNGTVGSQGEKVLAFIEK-VKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVIDK 121

Query: 139 IAAALILQEVLD 150
           +AAA+ILQ  LD
Sbjct: 122 MAAAVILQGYLD 133


>gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC
           3773]
          Length = 143

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G++ +G+A+SDP    A     + + +   +  LE L   I  + +   ++GLP
Sbjct: 3   ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN SEGPR  + R +   M++    +P  F DERLTTV A+++LI + ++SRKKR Q 
Sbjct: 63  KNMNNSEGPRAEAARRYAK-MVEETFGLPTDFQDERLTTVQAERMLIEEADISRKKRKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDKIAAEFILQNYLD 136


>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34]
 gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 139

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + ++  +   E L   +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN +EGPRV +++A+  + I+    +P  + DERLTTV A+++L++  +VSR KR + 
Sbjct: 63  KNMNNTEGPRVEASKAY-GDKINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA LILQ  LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138


>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
 gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
          Length = 143

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I  +D+G KR+G+AISD     A     + RK   +      +   I+  N+   I+GLP
Sbjct: 3   ILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP   +   +   +  + + +   FWDERLTT +A++ILI+ +VSR+KR   +
Sbjct: 63  KNMNGTLGPSSEAVENYTKKL-QKAISIDLEFWDERLTTAAAERILIEADVSRQKRKGVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 122 DKLAAVLILQSYLD 135


>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
           BAA-613]
          Length = 171

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
           N  I  +D G+K +G+A+ DP    A     + R    K+ QT   +   I    I   +
Sbjct: 30  NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMN + G R   T+ F    ++R+  +  + WDERLTTV+A+++LI+  V R+ R
Sbjct: 90  LGYPKNMNNTVGERGEKTQEF-KAALERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148

Query: 133 IQKVDSIAAALILQEVLDRISF 154
            + VD IAAA+ILQ  LD + +
Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170


>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
 gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
 gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
          Length = 139

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++      E LS  +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + D   ++P V+ DERLTTV A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGKKIEDL-FHIPVVYQDERLTTVQAERMLIEQADISRGKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
           F0211]
 gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
           F0211]
          Length = 139

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 88/136 (64%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + ++  +   + L+ +  E  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I++  ++P  + DERLTTV+A+++LI+  +VSRKKR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GTKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 903]
 gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 903]
          Length = 139

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + +   +  LE L+  +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   MI  K  +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GAMIAEKFGMPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str.
           Israel]
 gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str.
           Israel]
          Length = 157

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 1/145 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IE   + L  N+ I  +D G +++GLAISD     A P    +R+ + Q   EL + +  
Sbjct: 6   IEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELNAILKR 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           E I A ++GLPL ++G EG      RAFV  +I +K  +     DER TT  A +    +
Sbjct: 66  EGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLI-KKSGIYVYLHDERYTTAMASRATESL 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
            + RK+  +  D I+A LILQ+VLD
Sbjct: 125 GLRRKESQKVDDKISAVLILQQVLD 149


>gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
 gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
          Length = 138

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           I  +DLGTK +G+A+SD  G          + +      L  LS +T ++ I   ++G P
Sbjct: 3   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTVGPRGEASQTFAK-LLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138


>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
           F0405]
 gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
           F0405]
          Length = 139

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + +   +  LE L+  +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   MI  K  +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GTMIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
           F0396]
 gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
 gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
           F0396]
 gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
          Length = 139

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+AISDP    A     +   K+ + A E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVEKFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN +EGPRV +++A+  + I     +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 60  GLPKNMNNTEGPRVEASKAY-GDKIKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
 gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
 gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
 gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
 gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
 gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
 gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
 gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
 gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
          Length = 137

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++  Q   + +S  +   ++   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LDR
Sbjct: 122 DKMAAVVILQGFLDR 136


>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 139

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     +   +  Q    + LS  +    ++ F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P V+ DERLTTV A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           220]
 gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
           Scott A]
          Length = 135

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D 
Sbjct: 62  MNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 121 LAAVMILQSYLD 132


>gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
           700338]
 gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
           700338]
          Length = 136

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLS-FITTENIAAFIIGLPL 77
            +D+G+K +G+AISDP   F      +VR  ++  +   E L   +    +  F++GLP 
Sbjct: 2   GLDVGSKTVGVAISDP-LGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
           NMN +EGPRV +++A+  + I+    +P  + DERLTTV A+++L++  +VSR KR + +
Sbjct: 61  NMNNTEGPRVEASKAY-GDKINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119

Query: 137 DSIAAALILQEVLDRI 152
           D +AA LILQ  LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135


>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
 gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
 gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
 gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
          Length = 143

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALE-LLSFITTENIAAFIIGL 75
            I  +DLGT+  G+AISD     AH    F   +   + A++ +   + T  I+  ++GL
Sbjct: 2   KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNGS G R   T+ F   + +    V  + WDERLTT+  +++LI  +VSR KR + 
Sbjct: 62  PKNMNGSIGERGQVTQEFAKKL-EEATNVTVILWDERLTTMQVERVLIQADVSRNKRKKV 120

Query: 136 VDSIAAALILQEVLD 150
           VD +AA +ILQ  LD
Sbjct: 121 VDKMAATIILQSYLD 135


>gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
 gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
          Length = 143

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A+SDP    A     + RK   K+ +T   + S  T   +  F+IG 
Sbjct: 4   IMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIGF 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R      F   M+ R+  +  V WDERLTTV A++ L++  V R+ R Q 
Sbjct: 64  PKHMNNDIGERAEKALEF-GEMLKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRKQY 122

Query: 136 VDSIAAALILQEVLDRISF 154
           VD IAA  ILQ  LD +  
Sbjct: 123 VDQIAAVFILQGYLDSLGM 141


>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Eubacterium saburreum DSM 3986]
 gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Eubacterium saburreum DSM 3986]
          Length = 145

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFII 73
           + I  +D G+K IG+AISD     A P   + R    K+ ++  ++   +  +NI   ++
Sbjct: 5   ERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+NMNG  G RV  T  FV  +  R V VP +  DERLTTV A +IL +  V ++ R 
Sbjct: 65  GLPVNMNGRRGKRVSLTLEFVEKLKQR-VDVPIIMQDERLTTVEADEILDESGVKKENRK 123

Query: 134 QKVDSIAAALILQEVLDR 151
           Q +D +AA +IL+E +++
Sbjct: 124 QFIDMVAAGIILREYMEK 141


>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
 gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
 gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
          Length = 138

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           +  +DLGTK +G+A+SD  G          + ++  +  L+ L  I  E  +   ++G P
Sbjct: 3   VLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++ +  +P + WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTVGPRAEASQRFAK-LLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQSYLD 135


>gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23]
 gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
 gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
 gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
 gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
 gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
 gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
          Length = 135

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D 
Sbjct: 62  MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 121 LAAVMILQSYLD 132


>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 140

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  +DLG K IG+AISDP   F       +R+   +  +E L  I  E  +   +IGLP 
Sbjct: 4   ILGLDLGQKTIGVAISDP-LGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP      AF   +++ +  +   FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63  NMNGTIGPSGEIAMAF-GKLLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 121

Query: 138 SIAAALILQEVLDRIS 153
            +A+  ILQ  LD IS
Sbjct: 122 KVASTYILQGYLDMIS 137


>gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
           14579]
 gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264]
 gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185]
 gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
 gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
 gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
 gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550]
 gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase
 gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase
 gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264]
 gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550]
 gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
 gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
 gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
 gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185]
 gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 137

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++      + +S  +   N+   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LDR
Sbjct: 122 DKMAAVVILQGFLDR 136


>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
          Length = 134

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLG K IG+A+SD        +P LV K+  +   EL   I    +   ++G P N
Sbjct: 3   VMGLDLGEKTIGVAVSDL--LMLTAQPLLVIKRSEKEQEELAGIIKEYEVDTIVVGYPKN 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R  +T AF   +      +P   WDERL+TV+AQ+ LI  +VSR KR + +D 
Sbjct: 61  MNGTIGERALATEAFAQEL-QAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVIDK 119

Query: 139 IAAALILQEVLD 150
           +AA  ILQ  LD
Sbjct: 120 MAAVFILQGFLD 131


>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
 gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
 gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
 gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
          Length = 138

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G + IG+A+SDP    A     + RK       EL +     N+   + GLP N
Sbjct: 3   ILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F   +I  K+ +P   WDERLTTV+A + +++ ++SR KR + VD 
Sbjct: 63  MNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVDK 121

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LD IS
Sbjct: 122 MAAIYILQGYLDSIS 136


>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
           XB6B4]
          Length = 144

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +GLA+SD     A     + R+   K+ QT   + + I    +   ++G 
Sbjct: 3   ILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN +EG R   T+ F   M++R+  +  + WDERLTTVSA + +++  + R+ R + 
Sbjct: 63  PKNMNNTEGERCEKTKEF-KEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKKY 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAA  ILQ  LD
Sbjct: 122 VDEIAAVFILQGYLD 136


>gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
           345-E]
 gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Dialister micraerophilus DSM 19965]
 gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
           345-E]
 gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Dialister micraerophilus DSM 19965]
          Length = 145

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 2/137 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I ++D+G+  IG+AISD     A      +R    +   E L + I + ++   ++G+PL
Sbjct: 3   IMALDVGSHTIGVAISDLMGWTAQGLE-TIRHSTREKDFERLKTIIDSYDVKEIVVGMPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  FV ++      +P  FWDERLTTV AQ+ LI  ++SRKKR + +D
Sbjct: 62  NMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVID 121

Query: 138 SIAAALILQEVLDRISF 154
            +AA +IL+  L  + F
Sbjct: 122 KLAATVILEGYLRHLEF 138


>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
           05ZYH33]
 gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
           98HAH33]
 gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
 gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84]
 gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7]
 gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407]
 gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
 gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
 gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
 gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
 gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
 gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
 gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
 gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
 gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
           suis GZ1]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 87/136 (63%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE L+  +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+  +++  +  +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GDLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
           thermophilus LMD-9]
 gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
 gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
 gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+AISDP    A     +   K+ + A E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAISDPLGFTAQGVEII---KINEEAKEFGFDRLGELVKEYQVDKFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN +EGPRV +++A+  + I     +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 60  GLPKNMNNTEGPRVEASKAY-GDKIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
 gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
          Length = 138

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D G +RIG+A+SD     A     + R+       ++ + +    +   ++GLP N
Sbjct: 3   VMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR      F  N +   + +P   WDERLTT SA++ L++ +VSRKKR Q VD 
Sbjct: 63  MNGTVGPRGEICIEFA-NRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVDK 121

Query: 139 IAAALILQEVLD 150
           +AA+LILQ  LD
Sbjct: 122 LAASLILQNYLD 133


>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
           771]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I  +DLG K IG+A+SDP    A     + RK   +  L  L   I    +   ++GLP 
Sbjct: 3   IMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F+   + RK+ +    WDERL+TV+A++IL+  ++SR KR + +D
Sbjct: 63  NMNGTTGPQAEKALDFIE-YLKRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKVID 121

Query: 138 SIAAALILQEVLDRISFL 155
            +AAA+ILQ  LD  S +
Sbjct: 122 KMAAAVILQGYLDAHSCI 139


>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
 gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    ++    + RKK +     +   +   ++   ++GLP N
Sbjct: 4   IMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV +++ ++V V  V+ DER+TT+ ++ +L+DM V R+ R + +D 
Sbjct: 64  MNNTIGPQAMRVISFV-DLLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKYIDK 122

Query: 139 IAAALILQEVLDR 151
           IAA  ILQ  LDR
Sbjct: 123 IAATFILQTYLDR 135


>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
           43243]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 4/132 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A++DP      P   + R    K+  T   +   I   ++   ++GL
Sbjct: 3   ILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+EG R   +R F  +M++R+  +  V  DERLTTV A++IL    V+RK   + 
Sbjct: 63  PLNMDGTEGERAACSREF-GDMLERRTGLQVVMTDERLTTVEAEEILETCKVARKDYKKY 121

Query: 136 VDSIAAALILQE 147
           VDS+AA LIL++
Sbjct: 122 VDSVAAVLILED 133


>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     +   +  Q    + LS  +   +++ F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P V+ DERLTTV A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
 gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
 gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
          Length = 140

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLN 78
            +D+GTK IG+A+SD     A       R    + A    + S +    +   +IGLP N
Sbjct: 5   GLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVP--FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           M+GS GP    +  F   +   + YVP   V WDERLTT +A+++LI  +VSRKKR   +
Sbjct: 65  MDGSIGPSGERSETFAAEL---RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKSVI 121

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LDR
Sbjct: 122 DKMAAVMILQGYLDR 136


>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A P   + R K       +       +I+  ++GLP N
Sbjct: 4   IMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV ++I +++    V+ DERLTT+ ++ +LIDM+V R+ R   +D 
Sbjct: 64  MNNTMGPQSMRIISFV-DLIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAHIDK 122

Query: 139 IAAALILQEVLDR 151
           IAA+ ILQ  LDR
Sbjct: 123 IAASFILQTYLDR 135


>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
 gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
          Length = 139

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 3/133 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLN 78
            +D+GTK +G+A+SD     A     L R +    +  L++       ++   +IGLP N
Sbjct: 5   GLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP       F  ++ +  V   FV WDERLTTV+A+++L+  +VSRKKR + +D 
Sbjct: 65  MNGTIGPSGERCMEFADSLKEH-VDCEFVMWDERLTTVAAERMLVSADVSRKKRKKVIDK 123

Query: 139 IAAALILQEVLDR 151
           +AA +ILQ  LDR
Sbjct: 124 MAAVMILQGYLDR 136


>gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa
           SC2]
 gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
           SC2]
          Length = 138

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D G +RIG+A+SD     A     + R+       ++ + +    I   ++GLP N
Sbjct: 3   VMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR      F  N +   + +P   WDERLTT SA++ L++ +VSRKKR Q VD 
Sbjct: 63  MNGTVGPRGEICIEFA-NRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVDK 121

Query: 139 IAAALILQEVLD 150
           +AA+LILQ  LD
Sbjct: 122 LAASLILQNYLD 133


>gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20]
 gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase
 gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20]
          Length = 143

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
            +D+G++ +G+A+SDP    A     + + +   +  L  L  I  E  A   ++GLP N
Sbjct: 5   GLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN SEGPR  + R +   M++ +  +P  F DERLTTV A+++L+ + +VSRKKR Q +D
Sbjct: 65  MNNSEGPRAEAARQYAQ-MVEDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRKQVID 123

Query: 138 SIAAALILQEVLD 150
            IAA  ILQ  LD
Sbjct: 124 KIAAEFILQNYLD 136


>gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 138

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K IG+AISDP G          + + + +  +E L   I    +   ++G P
Sbjct: 3   IIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN S GPR  ++  F   ++     +P V WDERLTT +A+++LI  +VSRK R + +
Sbjct: 63  KNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKKVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVMILQGYLD 135


>gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase
 gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 143

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G++ +G+++SDP    A     + + +   +  ++ L  I  E N    ++GLP
Sbjct: 3   ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN SEGPR  ++R +   +I++   +P  F DERLTTV A+++LI + N+SRKKR + 
Sbjct: 63  KNMNNSEGPRAEASRNYAK-LIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDKIAAEFILQNYLD 136


>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
           574]
 gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
           574]
          Length = 140

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           +  +D+G K IG+A+SDP    A     + R       L  L+ I  E  +   ++GLP 
Sbjct: 3   VMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+     AF+  + +R + +P   WDERL+TV+A++ L++ +VSR KR + +D
Sbjct: 63  NMNGTLGPQGEKVLAFIERLKER-INLPVKTWDERLSTVAAERALLEADVSRSKRKKVID 121

Query: 138 SIAAALILQEVLD 150
            +AAA+ILQ  LD
Sbjct: 122 KMAAAVILQGYLD 134


>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
           thermophilus LMG 18311]
 gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
           thermophilus CNRZ1066]
 gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
 gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
 gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
           18311]
 gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
           CNRZ1066]
          Length = 139

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+AISDP    A     +   K+ + A E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAISDPLGFTAQGVEII---KINEEAKEFGFDRLGELVKEYQVDKFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN +EGPRV +++A+  + I     +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 60  GLPKNMNNTEGPRVEASKAY-GDKIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 138

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +DLGTK +G+A+SD  G          + +      L  LS +  E  I   ++G P
Sbjct: 3   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138


>gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
           11563]
 gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
           11563]
          Length = 139

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 83/132 (62%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+A+SDP    A     + + +++ +  L+ L  +  E  + A ++GLP N
Sbjct: 5   GLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN S GPR  +++ +   +IDR   +P  + DERLTTV A+++LI  +VSRKKR + +D 
Sbjct: 65  MNNSIGPRAEASQKYGQLVIDR-FDLPVFYQDERLTTVQAERMLIANDVSRKKRKKVIDK 123

Query: 139 IAAALILQEVLD 150
           +AA LILQ  LD
Sbjct: 124 LAAVLILQNYLD 135


>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
           2522]
 gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
           2522]
          Length = 142

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLP 76
           +  +D+GT  IG+AISD     A     + R K    Q    L   I  ++++  ++GLP
Sbjct: 3   VLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP     +AF   + +R   +    WDERLTTV+A+++L+  +VSRKKR + +
Sbjct: 63  KNMNGTIGPSGELCQAFAEKLKER-TNLKVELWDERLTTVAAEKMLVSADVSRKKRKKVI 121

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LDR
Sbjct: 122 DKMAAVMILQGYLDR 136


>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR]
 gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
          Length = 133

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 4/132 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+GTKRIG+A+SDP R  A     +   K  +   EL   I    ++  ++GLP N
Sbjct: 3   VLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLPKN 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS GP+          + +  + +P   +DERLTTV+A++IL++ ++SR KR Q VD 
Sbjct: 60  MDGSLGPKAQEILELTEKLRE-TLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVDK 118

Query: 139 IAAALILQEVLD 150
            AA LILQ  LD
Sbjct: 119 TAAVLILQGYLD 130


>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
 gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
          Length = 139

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  Q   E L+  +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I +   +P  + DERLTTV+A+++LI+  +VSR KR + 
Sbjct: 63  KNMNNTSGPRVEASKAYGEK-IAQLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 139

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+AISDP    A     +   K+ + A E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVEKFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN +EGPRV +++A+  + I     +P  + DERLTTV A+++L++  ++SR KR
Sbjct: 60  GLPKNMNNTEGPRVEASKAY-GDKIKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis
           CGDNIH1]
          Length = 168

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS+  + DL   L  NQ +  ID G++ IG+A+SD     A P   + R K+   A E+ 
Sbjct: 3   MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +    E     IIGLPL+M+GS GP   + R +   + D    +P   WDER T+    Q
Sbjct: 63  AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWAIALSD-ATGLPAALWDERETSSRVHQ 121

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +LI   ++ RK+R   VD +AAA++LQ  LD
Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALD 152


>gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
           str. JGS1495]
 gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
           str. JGS1495]
          Length = 137

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G+K IG+A+SDP    A     + R   T+    ++       +   ++G+P N
Sbjct: 3   ILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP     +      I++       FWDERLTTV+A + +++ ++SR KR + VD 
Sbjct: 63  MNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRIS 153
           IAA  ILQ  LDRIS
Sbjct: 122 IAATYILQGYLDRIS 136


>gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
 gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
          Length = 138

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           +  +D+G+K +G+AISD  G          + +   Q   + +  +  E  ++  ++GLP
Sbjct: 3   VMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  S++ +   +++++V +P V WDER+TT +A++ L++ +VSR KR + +
Sbjct: 63  KNMNNTLGPRAESSKKYAE-VLEKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKKVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKLAAVMILQSYLD 135


>gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
           acetobutylicum EA 2018]
          Length = 135

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID+G K IG+A+SDP    A     + RK   +   EL        +   + GLP N
Sbjct: 3   ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +      F   +I + + VP   WDERLTTV+A + +++ ++SRKKR + VD 
Sbjct: 63  MNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVDK 121

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  LD I
Sbjct: 122 VAATYILQGYLDSI 135


>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
 gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
 gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
           M50/1]
          Length = 144

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SD     A     + R+   K+ QT   + + I    +   ++G 
Sbjct: 3   ILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN +EG R   T+ F   M++R+  +  + WDERLTTVSA + +++  + R+ R + 
Sbjct: 63  PKNMNNTEGERCEKTKEF-QEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKKY 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAA  ILQ  LD
Sbjct: 122 VDEIAAVFILQGYLD 136


>gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 139

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +   E L   +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN +EGPRV +++ +  + I++   +P  + DERLTTV A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTEGPRVEASKVY-GDKINKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRKKV 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA LILQ  LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138


>gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
 gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase
 gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           natto BEST195]
 gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
          Length = 138

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +DLGTK +G+A+SD  G          + +      L  LS  I    I   ++G P
Sbjct: 3   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138


>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 140

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G   IG+A+SD     A     + R+   +    +   I  +N+   + GLP N
Sbjct: 6   IMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F   +I  +  +   FWDERLTTVSA+++LI  +VSRK R + +D 
Sbjct: 66  MNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVIDK 124

Query: 139 IAAALILQEVLDRISF 154
           +AA LILQ  LD   F
Sbjct: 125 LAAVLILQNYLDFKKF 140


>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
 gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
           743B]
 gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
          Length = 135

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G K IG+A+SDP    A     + RK +      ++++     +   ++GLP N
Sbjct: 3   VLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+     AFV  +  +   +    WDERLTTV+A + +++ ++SR KR + VD 
Sbjct: 63  MNGTLGPQSEKVMAFVEKL-KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVDK 121

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  LD I
Sbjct: 122 VAATYILQGYLDSI 135


>gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1056]
          Length = 139

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE LS +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ]
 gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase
 gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum
           HZ]
          Length = 166

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 1/145 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I +L  +L+P + I  ID G ++IGLA+SDP    A P     R+ + Q   EL + + +
Sbjct: 6   IRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELSAVLRS 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           E+ A  ++G PL  +G EG      RAF   +I +K  V     DER TT  A +   + 
Sbjct: 66  EDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLI-KKSGVSIYLHDERYTTAMASRATREA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
            + RK+  +  D I+AAL+LQ+VLD
Sbjct: 125 GLRRKESQKIDDKISAALVLQQVLD 149


>gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 143

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G++ +G++ISDP    A     + + +   +  ++ L  I  E N    ++GLP
Sbjct: 3   ILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN SEGPR  ++R +   +I+    +P  F DERLTTV A+++LI + N+SRKKR + 
Sbjct: 63  KNMNNSEGPRAEASRNYAK-LIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDKIAAEFILQNYLD 136


>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
 gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
          Length = 139

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +   N+   ++GL
Sbjct: 4   ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T +F   ++ R+  +  + WDERLTTV+++++L++  V R+ R + 
Sbjct: 64  PKNMNNTVGERGEDTLSFRDALV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D IAA++ILQ  LD
Sbjct: 123 IDQIAASMILQGYLD 137


>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 139

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   +   E L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV ++RA+   + +    +P  + DERLTTV+A+++LI+  +VSR KR + 
Sbjct: 63  KNMNNTSGPRVEASRAYGAKVTEL-FGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 140

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  +D+G K IG+A+SD     A P   + R+   Q   ++ + I   NIA  ++GLP
Sbjct: 6   EKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGLP 65

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GP+      F   +   K  V  ++ DER+TT+SA +ILI+  V R+ R Q V
Sbjct: 66  KNMNNTLGPQSEKVLKFSEKL-KNKYGVEIIYIDERMTTISANRILIEGEVRRENRKQYV 124

Query: 137 DSIAAALILQEVLD 150
           D IAA  ILQ  LD
Sbjct: 125 DKIAATYILQTYLD 138


>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
           05HAS68]
 gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
 gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
 gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
          Length = 136

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 86/134 (64%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++  +  LE L+  +    +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+  +++  +  +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAY-GDLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
           13479]
 gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
           13479]
          Length = 161

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SD     A     + R+   K+ +T   +   I    I   ++G 
Sbjct: 18  IMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIEELIREYEIETIVLGY 77

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G RV  T +F   M++R+  +P V WDERLTTV +++IL +  V R+ R   
Sbjct: 78  PKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSERILQESGVRRENRKAV 136

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 137 IDKVAAGLILQGYLD 151


>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
           SAFR-032]
 gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
 gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
 gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Bacillus pumilus SAFR-032]
 gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
          Length = 138

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +DLGTK +G+AISD  G          + +      L  LS I ++      ++G P
Sbjct: 3   ILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  ++++F   +++    VP V WDERL+T++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTVGPRGEASQSFAK-VLENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138


>gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05]
 gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1]
 gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05]
 gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1]
          Length = 152

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 74/143 (51%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            IDLG  R+GLA+SDPG  FAHP     V         E+L  I   N+   +IGLPL +
Sbjct: 5   GIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127
           +G+EG        +  N+I R             Y+P V W DERLTTVSA + L+  ++
Sbjct: 65  DGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQADL 124

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           S KK    VD  +A LILQ  LD
Sbjct: 125 STKKHRPMVDQQSAVLILQSALD 147


>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
 gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 139

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP N
Sbjct: 3   IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
           MNG+ GP+      FV ++      +P + WDERLTTV AQ++LI+  ++SR KR + +D
Sbjct: 63  MNGTLGPQGQKVMRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVID 121

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 122 KLAAVLILQNYLD 134


>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
 gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
 gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
 gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
          Length = 138

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLP 76
           +  +D+GTK IG+A+SD     A     +    +++ Q+   L   I   ++   ++GLP
Sbjct: 3   VLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +   F  N +  K+ +  + WDERL+T++A+++L+  +VSRKKR + +
Sbjct: 63  KNMNGTIGPRGEACIEFADN-VKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVMILQGYLD 135


>gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase
 gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 154

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 2/139 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L  +Q +  +D G K IGLA+SD     A P   L R K++  A E+      E +   +
Sbjct: 13  LGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIRRIAAREGVGGLV 72

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
            GLPL+M+GS GP   + R ++ ++ + +V +P   WDERL++ +  ++LI D +++R++
Sbjct: 73  SGLPLSMDGSFGPAAQAARDWMISLSE-QVGLPAAMWDERLSSSAVNRMLIQDADMTRQR 131

Query: 132 RIQKVDSIAAALILQEVLD 150
           R + VD +AA+ +LQ  LD
Sbjct: 132 RAELVDKLAASYMLQGALD 150


>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
           29176]
 gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
           29176]
          Length = 148

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 4/145 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+AISD  +  A     + RK   K+ +T   +   I    +   ++G 
Sbjct: 3   IMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F   M++R+  +  V WDERLTTV+A++ LI+ +V R+ R Q 
Sbjct: 63  PKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRKQY 121

Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
           VD IAA  ILQ  LD +S    + G
Sbjct: 122 VDKIAAVFILQGYLDLLSMRNGADG 146


>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
           10507]
          Length = 152

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SDP    A     + RK   K+ QT   + + I    +   ++GL
Sbjct: 3   ILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   +  F  +M+ R+  +P V WDERLTTV A + L++  V R+ R   
Sbjct: 63  PKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRKDY 121

Query: 136 VDSIAAALILQEVLD 150
           VD +AA  ILQ  LD
Sbjct: 122 VDELAAIFILQGYLD 136


>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
 gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
          Length = 139

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK  G+AISDP    A     + R++   +  T   +    T   +   ++GL
Sbjct: 3   ILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T  F   + + K+ +P   WDERL+TV+A+Q+L++ ++SRKKR   
Sbjct: 63  PKNMNNTLGERGEKTLLFKEKL-ENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRKNV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAATIILQNYLD 136


>gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246]
          Length = 169

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIA 69
           S  P   +  +D GTKRIG+A+ DP R  A P    V  +      E            A
Sbjct: 10  SFPPRGALLGVDYGTKRIGVAVCDPDRVIASP----VGTQANDATREPYFRDLCARSKFA 65

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++GLPL+ +G E P     RAF   + D    +P V WDER T+ +A+  L+   ++R
Sbjct: 66  GVVVGLPLHASGEESPMSGEARAFARWLSDL-TGLPVVMWDERHTSFAAESALLGAGLTR 124

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
           KKR +KVD +AA +ILQ  +D  S
Sbjct: 125 KKRKEKVDRVAAQMILQTFIDAGS 148


>gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
          Length = 138

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISD  G          + +   +  +E ++ +  E N+  F++G P
Sbjct: 3   IMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  ++ ++   +++     P   WDER+TT++A+++LI+ +VSRKKR Q +
Sbjct: 63  KNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVMILQGYLD 135


>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
           L2-14]
          Length = 145

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           +  +D GTK +G+AISDP    A     + RK   K+ +T   +   I    +   ++G 
Sbjct: 3   VMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F  +M+ R+  +  + WDERLTTV+A+Q LI+  V R+ R Q 
Sbjct: 63  PKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRKQY 121

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           VD IAA  ILQ  LD I   ++++
Sbjct: 122 VDKIAAVFILQGYLDSIYMQKTAE 145


>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Ames]
 gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
           10987]
 gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Sterne]
 gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
 gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
           Holliday junction resolvase in Mycoplasmas and B.
           subtilis) [Bacillus anthracis str. A2012]
 gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0488]
 gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0193]
 gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0174]
 gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
 gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
           NVH0597-99]
 gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
 gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
 gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
 gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           CDC 684]
 gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
 gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
 gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
 gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
 gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0248]
 gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           A1055]
 gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Kruger B]
 gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Australia 94]
 gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
 gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI]
 gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
 gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
 gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
 gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
 gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
 gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
 gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
 gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
 gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
 gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
 gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
           10987]
 gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           Sterne]
 gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
           resolvase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
           resolvase [Bacillus cereus E33L]
 gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0488]
 gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0193]
 gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0174]
 gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
 gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
 gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
           NVH0597-99]
 gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
 gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
 gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           CDC 684]
 gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
 gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
 gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
 gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
 gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0248]
 gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
 gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 137

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++  Q   + +S  +   ++   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
 gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
          Length = 138

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +DLGTK +G+A+SD  G          + ++  +  L+ L  I  E  +   ++G P N
Sbjct: 5   GLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR  +++ F   +++++  +P + WDERL+T++A+++LI  +VSRKKR + +D 
Sbjct: 65  MNGTVGPRAEASQRFAK-ILEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRKVIDK 123

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 124 MAAVVILQSYLD 135


>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 158

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G KRIG+A+ DP R  A  +P L  +   +   +LL  IT   +   +IGLPL 
Sbjct: 10  IIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVIGLPLT 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G  G +  + +AF   + +++  +P   +DER T+V A++ L  M + + K    VD 
Sbjct: 70  LRGEVGAQAKAVQAFSRGL-EKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHRDHVDE 128

Query: 139 IAAALILQEVLDRIS 153
           +AA LILQ+ +  I+
Sbjct: 129 LAAILILQDYMSSIA 143


>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
           200]
          Length = 139

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP N
Sbjct: 3   IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
           MNG+ GP+      FV ++    + +P + WDERLTTV A+++LI+  ++SR KR + +D
Sbjct: 63  MNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVID 121

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 122 KLAAVLILQNYLD 134


>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 135

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A     + RK++ +   E+        I   I GLP N
Sbjct: 3   ILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +      F  +++  K+ +P   WDERLTTV+A + +++ N+SR KR + VD 
Sbjct: 63  MNGTIGEQGEKVLEFC-DVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRI 152
           IAA  ILQ  LD I
Sbjct: 122 IAATYILQGYLDSI 135


>gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK330]
          Length = 139

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P  + DERLTTV+A+++L++  +VSR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADVSRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
 gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase
 gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
          Length = 138

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +DLGTK +G+A+SD  G          + ++      E L  I  E  +   ++G P N
Sbjct: 5   GLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGWPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR  ++  F   + + +  +P V WDERL+T++A+++LI  +VSRKKR + +D 
Sbjct: 65  MNGTLGPRAEASERFAAKLRE-EFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDK 123

Query: 139 IAAALILQEVLD 150
           +AAA+ILQ  LD
Sbjct: 124 MAAAVILQSYLD 135


>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
           str. Alaska E43]
 gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
 gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 137

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  +DLG K IG+AISDP   F       +R+   +  +E L  I  E  +   +IGLP 
Sbjct: 3   ILGLDLGKKTIGVAISDP-LGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP        +  +++  + +   FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPS-GEIAMEMGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +A+  ILQ  LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136


>gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
           G9241]
 gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
 gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
 gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676]
 gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
 gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W]
 gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
 gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           BMB171]
 gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
           G9241]
 gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
 gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
 gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W]
 gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
 gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676]
 gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
 gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           BMB171]
 gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 137

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++      + +S  +   N+   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
           12067]
 gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
           12067]
          Length = 140

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 74/134 (55%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+GT+ IG+A+SD     A+    + R    +    +   I    +   ++G P NMN
Sbjct: 5   SLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYPKNMN 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G R  +  A    +      V  V WDERL+TV+A+++L+D ++ RKKR + +D +A
Sbjct: 65  GTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVIDMMA 124

Query: 141 AALILQEVLDRISF 154
           A +ILQ  LD  SF
Sbjct: 125 AVVILQNYLDSKSF 138


>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
           acetobutylicum ATCC 824]
 gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
 gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
           acetobutylicum ATCC 824]
          Length = 135

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID+G K IG+A+SDP    A     + RK   +   EL        +   + GLP N
Sbjct: 3   ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +      F   +I + + VP   WDERLTTV+A + +++ ++SRKKR + VD 
Sbjct: 63  MNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVDK 121

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  L+ I
Sbjct: 122 VAATYILQGYLNSI 135


>gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
           2638]
 gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase
 gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
           2638]
          Length = 135

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 5/135 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           + SID GTKR+GLAISDP + FA   P+ V ++ T+ A+  ELL  I  E +   +IGLP
Sbjct: 3   VLSIDFGTKRVGLAISDPDQIFAF--PYKVMERTTRDAMFSELLEIIENEKVGDIVIGLP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+++G +       R F  ++ +R+V +P    DERL++++A+  L +  +  +KR + +
Sbjct: 61  LSLDGEDTLTTRQVRNFAASL-ERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNL 119

Query: 137 DSIAAALILQEVLDR 151
           DS AA +IL+  L R
Sbjct: 120 DSQAAKIILETWLAR 134


>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
 gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
          Length = 139

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP N
Sbjct: 3   IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           MNG+ GP+      FV ++  +K + +P + WDERLTTV A+++LI+  ++SR KR + +
Sbjct: 63  MNGTLGPQGQKVVRFVEHL--KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 121 DKLAAVLILQNYLD 134


>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
 gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
 gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
 gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
 gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
 gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
          Length = 137

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++  Q   + +S  +   N+   I+GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  ++ +  + +  + WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAQSLREL-LQLDVMMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGYLD 135


>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
           QYMF]
 gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
           QYMF]
          Length = 138

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G + IG+AISD     A     + R  + +    L   I    +   ++GLP N
Sbjct: 4   IIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      FV  + +++  +  V WDERL+TV+A++ LI  +VSRKKR Q +D 
Sbjct: 64  MNGTIGPQGEKVLLFVERL-EKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQVIDK 122

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LD IS
Sbjct: 123 LAAVHILQGYLDSIS 137


>gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens
           str. 13]
 gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens
           ATCC 13124]
 gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens
           SM101]
 gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
           str. JGS1987]
 gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
           str. ATCC 3626]
 gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           CPE str. F4969]
 gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           NCTC 8239]
 gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
           str. JGS1721]
 gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase
 gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase
 gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase
 gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           ATCC 13124]
 gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           SM101]
 gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
           str. JGS1987]
 gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
           str. ATCC 3626]
 gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           CPE str. F4969]
 gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
           str. JGS1721]
 gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           NCTC 8239]
          Length = 137

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G+K IG+A+SDP    A     + R   T+    ++       +   + G+P N
Sbjct: 3   ILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP     +      I++       FWDERLTTV+A + +++ ++SR KR + VD 
Sbjct: 63  MNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRIS 153
           IAA  ILQ  LDRIS
Sbjct: 122 IAATYILQGYLDRIS 136


>gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
 gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
          Length = 145

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 84/134 (62%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
            +D+G+K +G+A SDP    A     + + ++     LE ++  + +  +A F++GLP N
Sbjct: 5   GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV + R +   +++ +  +P  + DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65  MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 124 ELAATLILQNYLDR 137


>gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 139

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +   ++   ++GL
Sbjct: 4   ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T +F   ++ R+  +  + WDERLTTV+++++L++  V R+ R + 
Sbjct: 64  PKNMNNTVGERGEDTLSFRDTLV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D IAA++ILQ  LD
Sbjct: 123 IDQIAASMILQGYLD 137


>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK72]
 gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK49]
 gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1059]
          Length = 139

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    +     +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQR-VSELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC
           3537]
          Length = 143

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76
           I  +D+G++ +G+A+SDP    A     + + +   +  LE L  I  E  A   ++GLP
Sbjct: 3   ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
            NMN +EGPR  + R +   M++    +   F DERLTTV A+++LI+  +VSRKKR + 
Sbjct: 63  KNMNNTEGPRAQAARDYAK-MVEDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D IAA  ILQ  LDR
Sbjct: 122 IDKIAAEFILQNYLDR 137


>gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM
           14469]
 gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM
           14469]
          Length = 161

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+AISD     A     + R    K+ QT   + + I   ++   ++G 
Sbjct: 9   IMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLGF 68

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   + AF   M++R+  +P V WDERLTTV A + L++  V R+KR   
Sbjct: 69  PKNMNNTIGERAEKSLAF-KEMLERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKDY 127

Query: 136 VDSIAAALILQEVLDRISF 154
           VD +AA  ILQ  LD ++ 
Sbjct: 128 VDKLAAVYILQGYLDYLAM 146


>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
           16646]
 gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
           16646]
          Length = 145

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G KRIG+A+SD     A     + R  V +    +   +    +   IIGLPLN
Sbjct: 3   ILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+    + F   +    + +   +WDERL+TV+A+++LID ++SR+KR   +D 
Sbjct: 63  MNGTLGPQGQLVKDFGEKL-RHSLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVIDK 121

Query: 139 IAAALILQEVLDRISFLESS 158
           ++A +ILQ  LD  S +++ 
Sbjct: 122 LSAIVILQSFLDSRSNIDTG 141


>gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
 gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
          Length = 145

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77
            +D GTK +G+A+SD     A     + RK   K+ QT   + + I    ++  ++GLP 
Sbjct: 7   GLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIVLGLPK 66

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + G R   T+ F   M+ R+  +  V WDERLTT+ +++IL +  V R+ R +++D
Sbjct: 67  NMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENRKERID 125

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  +D
Sbjct: 126 WMAATLILQSYMD 138


>gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
 gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
 gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
 gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase
 gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
 gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
 gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
          Length = 144

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78
            +D+G+K +G+A SDP G   +      + +   +  L+ L  I +E  ++  +IGLP N
Sbjct: 5   GLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV ++R +   M+  +  +P  + DERLT+V A ++LI + ++SR KR + +D
Sbjct: 65  MNNTEGPRVEASRNY-GKMVSERFGLPIDYQDERLTSVEANRMLIEEADLSRAKRKKVID 123

Query: 138 SIAAALILQEVLDR 151
           S+AA LILQ  LD+
Sbjct: 124 SLAAQLILQNYLDK 137


>gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM
           13528]
 gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
           13528]
          Length = 137

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G + IG+A+SDP    A     + RK   +   EL S      +   + GLP N
Sbjct: 3   ILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +     +F   +I++ + VP   WDERLTTV+A + +I+ ++SR KR + VD 
Sbjct: 63  MNGTLGLQSEKVLSFC-KVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LD IS
Sbjct: 122 MAAIYILQGYLDSIS 136


>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
           str. Eklund 17B]
 gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
 gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 137

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  +DLG K IG+A+SDP   F       +R+   +  +E L  I  E  +   +IGLP 
Sbjct: 3   ILGLDLGKKTIGVAVSDP-LGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP        +  +++  + +   FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPS-GEIAMEMGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +A+  ILQ  LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136


>gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK115]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
           SK36]
 gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
 gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
           SK36]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
           ATCC 700641]
 gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
           ATCC 700641]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  L+ LS +  E  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    ++    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GKRLEELFNLPVEYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
 gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
          Length = 140

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 84/135 (62%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLP 76
           +  +D+G+K +G+AISDP G         ++ +  ++     ++  +    +   +IG+P
Sbjct: 3   VMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGMP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN + GPR  +++ +  ++ ++++ +P VF DERLTT+ A+++L+ + NVSRKKR + 
Sbjct: 63  KNMNNTAGPRAEASQKYGRSL-EKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRKEV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAVIILQNYLD 136


>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
 gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
          Length = 140

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SD     A     + R        E+   I  + +   + GLP N
Sbjct: 6   IMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+    + F   +I  +  +   FWDERLTTV+A++ LI  +VSRKKR   +D 
Sbjct: 66  MNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVIDM 124

Query: 139 IAAALILQEVLD 150
           +AA LILQ  LD
Sbjct: 125 MAAVLILQGYLD 136


>gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK405]
 gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK678]
 gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK150]
 gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1]
 gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1057]
 gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK408]
 gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1058]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP N
Sbjct: 3   IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           MNG+ GP+      FV ++  +K + +P + WDERLTTV A+++LI+  ++SR KR + +
Sbjct: 63  MNGTLGPQGQKVVRFVEHL--KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 121 DKLAAILILQNYLD 134


>gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
 gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
          Length = 85

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP NM+GSEGPR  ++RAF  N  +    +P + WDER +T SA+  +I  ++SRKK
Sbjct: 1   MLGLPRNMDGSEGPRAQASRAFARN-AEEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           R + +DS AAA+ILQ  +DR++
Sbjct: 60  RAESIDSHAAAVILQGAIDRLA 81


>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
 gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 73/133 (54%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G K IG+AISD     A     + R  + +    L   I   +I   ++GLP NMN
Sbjct: 6   GLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNMN 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ GP+      F   +  R   V  V WDERLTTV+A++ LI+ +VSRKKR + +D +A
Sbjct: 66  GTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEVIDKMA 125

Query: 141 AALILQEVLDRIS 153
           A  ILQ  LD  S
Sbjct: 126 AVYILQGYLDSAS 138


>gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3]
          Length = 78

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query: 1  MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
          M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1  MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60

Query: 61 SFITTENIAAFIIGLPLN 78
           F   E +A F+IGLP+N
Sbjct: 61 DFAAKERVAGFVIGLPMN 78


>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
 gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   +   E L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  +VSR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKVTEL-FGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SSC/2]
          Length = 139

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +   ++   ++GL
Sbjct: 4   ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   T +F   ++ R+  +  + WDERLTTV+++++L++  V R+ R + 
Sbjct: 64  PKNMNNTVGERGEDTLSFRDALV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D IAA++ILQ  LD
Sbjct: 123 IDQIAASMILQGYLD 137


>gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
 gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
          Length = 246

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +  I  L   L+ +Q +  +D G K IG+A+SD G   A P   L R K++  A ++ 
Sbjct: 84  MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +    +++   ++GLPL+++GS GP   + R +  N+ +    +P   WDERL++ +  +
Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDWTLNLSE-LTGLPAAMWDERLSSSAVNR 202

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
            LI + +++R++R   VD +AAA ILQ  LD
Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233


>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 139

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  +   E L   +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I+    +P  + DERLTTV A+++LI+  +VSR KR + 
Sbjct: 63  KNMNNTSGPRVEASKAYGEK-IESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
           X514]
 gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
 gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
 gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
 gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
 gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
 gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
          Length = 139

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP N
Sbjct: 3   IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
           +NG+ GP+      FV ++    + +P + WDERLTTV A+++LI+  ++SR KR + +D
Sbjct: 63  LNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVID 121

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 122 KLAAVLILQNYLD 134


>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
 gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
          Length = 146

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SDP    A     + RK   K+ +T   + + I    +   ++GL
Sbjct: 5   IMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   + AF   M+ R+  +  V WDERLTTV A++ LI+  V R+ R + 
Sbjct: 65  PKHMNNDIGDRAEKSMAF-GEMLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 123

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA  ILQ  LD ++
Sbjct: 124 IDKIAAVFILQGYLDSLA 141


>gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK353]
          Length = 139

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842]
 gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
 gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
 gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
 gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
 gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase
 gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842]
 gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
 gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
 gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
 gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
          Length = 137

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+A+SD  G          + ++      + +S  +   N+   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
 gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271]
 gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603]
 gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
 gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621]
 gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3]
 gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase
 gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis
           KBAB4]
 gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3]
 gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621]
 gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
 gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603]
 gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271]
 gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
          Length = 137

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+A+SD  G          + ++      + +S  +   N+   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLRNL-LQLEVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
           12885]
 gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
           12885]
          Length = 326

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 9/140 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG++ IG+AISDP    A P   L R+   + A ++   +        ++G P  ++
Sbjct: 5   GLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPRRLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFV-FWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           G+ GP   +   F   +  R+  VP V  WDERL+TV A+++LI  ++SR++R Q +D +
Sbjct: 65  GTRGPEAEAAERFADAL--REAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQIIDRM 122

Query: 140 AAALILQEVLDRISFLESSK 159
           AA +ILQ      +FL+S +
Sbjct: 123 AATVILQ------AFLQSQR 136


>gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii
           L2-63]
          Length = 141

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPL 77
           I S+DLG  R G+A+ D     A P   +  K   Q  LE +S    E  A  I+ GLP 
Sbjct: 3   IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQ-LLEKVSNTAKETKAELIVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEG    + RAF  N+ + +  +  V  DER TT++A   L   N   KKR   VD
Sbjct: 62  NMDGSEGESAQNARAFAENLSN-ETGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVD 120

Query: 138 SIAAALILQEVLDR 151
            +AA +ILQ+ LD+
Sbjct: 121 EVAATIILQDYLDK 134


>gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase
          Length = 147

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 84/135 (62%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           +  +D+G++ +G+A+SD  G          + +   +  L+ ++ +  EN +  F++GLP
Sbjct: 4   LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV + +A+   +++ K  +P  F DERLTTV A+++L++  + SRKKR + 
Sbjct: 64  KNMNNTSGPRVEAAKAY-GELLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA+LILQ  LD
Sbjct: 123 IDKLAASLILQNYLD 137


>gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius
           UCC118]
 gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius
           UCC118]
          Length = 143

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78
            +D+G++ +G+A+SD  G          + +   +  L+ ++ +  EN +  F++GLP N
Sbjct: 2   GLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV + +A+   +++ K  +P  F DERLTTV A+++L++  + SRKKR + +D
Sbjct: 62  MNNTSGPRVEAAKAY-GELLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVID 120

Query: 138 SIAAALILQEVLD 150
            +AA+LILQ  LD
Sbjct: 121 KLAASLILQNYLD 133


>gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803]
 gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803]
          Length = 137

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+A+SD  G          + ++      + +S  +   N+   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
 gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
          Length = 135

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SDP    A     + RK++ +   E+        I   I GLP N
Sbjct: 3   ILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +      F  +++  K+ +P   WDERLTTV+A + +++ N+SR KR + VD 
Sbjct: 63  MNGTIGEQGEKVLEFC-DVLKDKLDIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRI 152
           IAA  ILQ  LD I
Sbjct: 122 IAATYILQGYLDSI 135


>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
 gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
          Length = 137

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G + IG+AISDP    A     + RK   +    +   I  + ++  I+GLP NMN
Sbjct: 6   GLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGLPKNMN 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            + GP+    + FV  +  +   +   + DERLTTVSA ++LI+ NVSRKKR   +DS+A
Sbjct: 66  NTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVA 124

Query: 141 AALILQEVLD 150
           A  ILQ  LD
Sbjct: 125 ATYILQTYLD 134


>gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426]
 gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
 gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
 gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
 gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase
 gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
 gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
 gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
          Length = 138

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +DLGTK +G+A+SD  G          +  +     L+ L  I  E  +   ++G P N
Sbjct: 5   GLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGWPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR  ++  F   + + +  +P V WDERL+T++A+++LI  +VSRKKR + +D 
Sbjct: 65  MNGTLGPRAEASERFAAKLRE-EFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDK 123

Query: 139 IAAALILQEVLD 150
           +AAA+ILQ  LD
Sbjct: 124 MAAAVILQSYLD 135


>gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK160]
          Length = 139

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
 gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
 gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
          Length = 143

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SD     A     + RK   K+ QT   +   I    +   ++G 
Sbjct: 3   ILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN +EG R   T+ F  +M+ R+  +  ++WDERLTTV+A + +++  + R+ R + 
Sbjct: 63  PKNMNNTEGERCEKTKEF-GDMLARRTGLEVIYWDERLTTVAADRSMMETGIRRENRKEF 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD IAA  ILQ  LD +S
Sbjct: 122 VDEIAAIFILQGYLDYLS 139


>gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase
 gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 151

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 5/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG+KRIG++I D  +  A P   + +    +   EL   I   NI   I+G P+NM+
Sbjct: 19  GLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKIIIKDNNIGGIIVGNPVNMD 78

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI--LIDMNVSRKKRIQKVDS 138
           GS G    S      N I + + +P + WDERL+TV A  +  L+D+NVS  KR++ +D 
Sbjct: 79  GSLGRSAQSVNDVASN-ISKSIDLPVILWDERLSTVGAFNLSSLLDVNVS--KRVKTIDQ 135

Query: 139 IAAALILQEVLD 150
            AAA ILQ  +D
Sbjct: 136 NAAAFILQGAID 147


>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
 gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
          Length = 147

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
            +D+G+K +G+A+SDP    A     + + +      L+ ++  +  E +A F++GLP N
Sbjct: 5   GLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV +++ +   + +R   +P  F DERLTTV A ++L+ + ++SR K+ + +D
Sbjct: 65  MNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  LDR
Sbjct: 125 EVAATFILQSYLDR 138


>gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           noxia ATCC 43541]
 gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           noxia ATCC 43541]
          Length = 137

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 76/136 (55%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G   IG+A+SD     A     + R+ ++     L   I      A + GLP +MN
Sbjct: 2   SLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHMN 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG R    RAF+ +  +R   +   +WDERL+TV+A + L++ +VSRKKR + +D +A
Sbjct: 62  GQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKMA 121

Query: 141 AALILQEVLDRISFLE 156
           A  ILQ  LDR   L+
Sbjct: 122 AVYILQGFLDRQQHLK 137


>gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 144

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G +RIG+A+SDP    A P   + R+   Q A E+      E +   ++G PL+M+
Sbjct: 2   AIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHMS 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G           F   M+  +  +P   +DERLTTVSA++ILI+ NV R++R   VD+ A
Sbjct: 62  GQPSEMTSRAEKFAR-MLAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAAA 120

Query: 141 AALILQEVL 149
           A ++L++ L
Sbjct: 121 AQVLLEDYL 129


>gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 138

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+GT RIG+A+SDP   FA      V         +L   +T+ +++  ++GLP+ 
Sbjct: 5   IVALDMGTVRIGVAMSDPLGSFAQG--VAVWDAEGDWLSDLRDLVTSRDVSTVVVGLPIR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            NG++GP   +  A    + +    +  V WDER T+  A ++LI+ +VSRKKR  +VD 
Sbjct: 63  ENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQVDK 122

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 123 VAATVILQGYLD 134


>gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
 gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
 gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 145

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+AISD  R  A     + RK   K+ +T   +   I   ++   ++G 
Sbjct: 3   IMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F   M+ R+  +  + WDERLTTV A++ LI+ NV R+ R + 
Sbjct: 63  PKHMNNDIGERAQQSMEF-GEMLKRRTGLEVILWDERLTTVEAERTLIESNVRRENRKKH 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDQIAAVFILQGYLD 136


>gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 135

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G + IG+A+SDP    A     + RK V +   EL        +   I GLP N
Sbjct: 3   ILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +      F  +++  K+ +P   WDERLTTV+A + +++ N+SR KR + VD 
Sbjct: 63  MNGTVGEQGEKVIEFC-DILKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  LD I
Sbjct: 122 MAATYILQGYLDSI 135


>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
 gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
          Length = 135

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 85/132 (64%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78
            +D+G+K +G+A+SD  G          + ++  +   E +S I  E+ ++  ++GLP N
Sbjct: 2   GLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR  +++ F  + +++   +P V WDERL+T++A+++L++ +VSRKKR + +D 
Sbjct: 62  MNGTIGPRGEASQ-FYASELEKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVIDK 120

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  L+
Sbjct: 121 MAAVMILQGFLN 132


>gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis
           ATCC 14580]
 gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis
           ATCC 14580]
 gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
 gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase
 gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580]
 gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580]
 gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
          Length = 139

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           I  +DLG+K +G+A+SD  G          + +      L  L+ +T +  I   ++G P
Sbjct: 3   ILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERL+T++A+++LI  +VSR+KR + +
Sbjct: 63  KNMNGTVGPRGEASQKFAE-VLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKVI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138


>gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK355]
          Length = 139

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   +  LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRRKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
 gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 138

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G K+IG+A+SD     A     + R  + +   E+   I   ++   +IG P N
Sbjct: 3   VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR    + F   +       P VFWDERL+TV A+++LI  ++SR+KR + +D 
Sbjct: 63  MNGTAGPRAELVKRFARELYKFTGIKP-VFWDERLSTVEAEKLLISGDISRRKRKKVIDK 121

Query: 139 IAAALILQEVLD 150
           +AA LIL   L+
Sbjct: 122 LAATLILSGYLN 133


>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
 gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
 gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 137

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           I  +D+G+K IG+A+SD  G      +     +    +A E L  I +E+ I   IIGLP
Sbjct: 3   IIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ G R  +++ +  N I++   +P   WDERLTT++A+++L++ ++SR KR + +
Sbjct: 63  KNMNGTIGERGEASQRYA-NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKVI 121

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LD+
Sbjct: 122 DKMAAVMILQGYLDQ 136


>gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 138

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 7/139 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G+K IG+AISDP    A     + R K  Q   E+       ++   +IGLP N
Sbjct: 3   ILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPKN 62

Query: 79  MNGS---EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           MNG+    G RV      +  +I     +    WDERLTTV+A + +++ ++SR KR + 
Sbjct: 63  MNGTIGESGERVLE----LSEIIKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKI 118

Query: 136 VDSIAAALILQEVLDRISF 154
           VD IAA  ILQ  LDR+S 
Sbjct: 119 VDKIAATYILQGYLDRLSM 137


>gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 147

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
            +D+G+K +G+A+SDP    A     + + +      L+ ++  +  E +A F++GLP N
Sbjct: 5   GLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV +++ +   + +R   +P  F DERLTTV A ++L+ + ++SR K+ + +D
Sbjct: 65  MNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  LDR
Sbjct: 125 EVAATFILQSYLDR 138


>gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1087]
          Length = 139

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++     LE L  +  E  +  F+IGLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+    I     +P  + DERLTTV+A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293]
 gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293]
          Length = 137

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++      + +S  +   ++   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           G54]
 gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
 gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 139

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
 gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 139

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP    A     +   K+ +   +     L   +    +  F+I
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEII---KINEDKQDFGFDRLAELVKQYQVDRFVI 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN + GPRV +++A+  + I+   ++P  + DERLTTV A+++LI+  ++SR KR
Sbjct: 60  GLPKNMNNTSGPRVEASKAY-GDRIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA LILQ  LD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136


>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 151

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           ++ IEDL K       +  +DLG+KRIG++I D  +  A P   + +    +   EL   
Sbjct: 1   MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           I   +I   ++G P+NM+G+ G    S      N ID+ + +    WDERL+TV A  + 
Sbjct: 61  IEEYDIKGIVVGNPINMDGTLGRSSQSVNDVSDN-IDKAIDIDVCLWDERLSTVGAFNLS 119

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
             ++V+  KR + +D  AAA ILQ  +D
Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAID 147


>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
           A2-162]
          Length = 140

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SDP    A     + RK   K+ QT   +   I    +   ++G 
Sbjct: 3   ILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R      F   M+ ++  +  + WDERLTTV A + LI+  V R+ R Q 
Sbjct: 63  PKNMNNTVGERAEKALEF-GEMLKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRKQY 121

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA  ILQ  LD +S
Sbjct: 122 LDGIAAVFILQGYLDSLS 139


>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
 gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
 gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
           equi 4047]
          Length = 139

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 6/136 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75
           I  +D+G+K +G+AISDP   F      ++R    +       L   +    +  F+IGL
Sbjct: 3   IMGLDVGSKTVGVAISDP-LGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
           P NMN + GPRV +++A+  + I+   ++P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASKAY-GDKIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 121 VIDKLAAQLILQNYLD 136


>gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6]
 gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6]
          Length = 139

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EELFSLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 142

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++DLG  RIG+A+SDP R FA P   L  K      L++   +   ++   ++GLP+ 
Sbjct: 8   VMALDLGEVRIGVALSDPSRSFASPLEVL--KMEEGWPLKVKELVERNSVTLIVVGLPIR 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +GS GP V     ++  +      V  V  DER TT  AQ+ L++ +V R+KR  KVD 
Sbjct: 66  TDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRKGKVDK 125

Query: 139 IAAALILQEVLD 150
           +AAAL+LQ+ L+
Sbjct: 126 VAAALMLQDYLN 137


>gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
 gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
          Length = 136

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + +   +   E L   + T  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
           16841]
 gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
           16841]
          Length = 145

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SD     A     + R+   K+ Q+   +   I   N+   ++G 
Sbjct: 3   ILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN +EG R   T+ F   M++R+  +  + WDERLTTVSA + +++  + R+ R + 
Sbjct: 63  PKNMNNTEGERCEKTKEF-KEMLERRTGLNVILWDERLTTVSADKHMMESGIRREDRKKF 121

Query: 136 VDSIAAALILQEVLDRISF 154
           VD IAA  ILQ  LD ++ 
Sbjct: 122 VDEIAAVFILQGYLDYLAM 140


>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
 gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
 gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
          Length = 150

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+  +G+AISD  +  A     + RK   K+ QT   +   I    +   ++G 
Sbjct: 3   IMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   +  F  ++  R+  +P V WDERLTTV+A Q+L    VS KK+++ 
Sbjct: 63  PKNMNNTIGERAEKSEEFAEHL-RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKMEV 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AA  ILQ  LD +S
Sbjct: 122 VDKLAAVFILQGYLDYLS 139


>gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC
           367]
 gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase
 gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367]
          Length = 145

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 4/144 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           +  +D+G++ +G+A+SD  G          + +   Q  L+ +   I + ++  F++GLP
Sbjct: 3   LMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN S GPR  +++ +  +M+  +  +P  F DERLTTV A+++L++  + SR+KR Q 
Sbjct: 63  KNMNNSLGPRAEASKRY-GDMLTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRKQV 121

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           +D +AA LILQ  LDR   L   K
Sbjct: 122 IDKLAAGLILQNYLDRHGKLTREK 145


>gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956]
 gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase
 gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956]
          Length = 145

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
            +D+G+K +G+A SDP    A     + + ++     LE ++  + +  +A F++GLP N
Sbjct: 5   GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV + R +   +++ +  +P  + DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65  MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 124 ELAATLILQNYLD 136


>gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246]
 gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
           Rustic]
 gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase
 gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246]
 gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
           Rustic]
          Length = 154

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 5/149 (3%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
           +++  + L PN P+ +ID G+K++G+A+S+  R  A P   +  + KK+  T+L  L+ I
Sbjct: 6   LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
               +   IIGLP++M+G+   + +    F   +  + + +P    DERLTT +A  +L 
Sbjct: 64  EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELA-KSINLPIYLQDERLTTKAANNLLK 122

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
              V RK R    D++AA++IL+ VLD I
Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151


>gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae
           MTU5]
 gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia
           massiliae MTU5]
          Length = 165

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 1   MSILLIEDL---VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57
           ++I++I++L    + L PN P+ +ID G+K++G+A+S+  R  A P   +          
Sbjct: 9   ITIMIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVIT 68

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
            LL+ I    +   IIGLP+NM+G+   + +    F   +  + + +P    DERLTT +
Sbjct: 69  SLLNIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAEEL-AKSINLPIYLQDERLTTKA 127

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           A   L    V RK R    D++AA++IL+ VLD I
Sbjct: 128 ANNFLKSFGVKRKDRNNNDDAVAASMILETVLDSI 162


>gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334]
 gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334]
          Length = 139

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 139

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP N
Sbjct: 3   IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
           M+G+ GP+      FV ++      +P + WDERLTTV AQ++LI+  ++SR KR + +D
Sbjct: 63  MSGTLGPQGQKVVRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVID 121

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 122 KLAAVLILQNYLD 134


>gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 147

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           +  +D+G++ +G+A+SD  G          + +   +  L+ ++ +  EN +  F++GLP
Sbjct: 4   LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV + +A+   ++  K  +P  F DERLTTV A+++L++  + SRKKR + 
Sbjct: 64  KNMNNTSGPRVEAAKAY-GELLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA+LILQ  LD
Sbjct: 123 IDKLAASLILQNYLD 137


>gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
           27560]
 gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
           27560]
          Length = 142

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A++DP    A     + R    K+ +T   +   +   NI   ++G 
Sbjct: 3   ILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ ++G+EG RV  T+ F   M++R+  +  VF DERLTTV A +I+ +  + ++ R + 
Sbjct: 63  PVMLSGTEGERVKKTKEF-GAMLERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRYKY 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD IAA +IL++ ++RI 
Sbjct: 122 VDQIAATIILEDYINRIE 139


>gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
 gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
          Length = 140

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID G  RIG+A+SD     AHP   +  K+V      + + +T++++   I+GLP NM+
Sbjct: 6   GIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGLPRNMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS GP     RAF   +           WDERLT+V+AQ+ L +     K   + +D +A
Sbjct: 66  GSYGPAAEKVRAFAEKL-RAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREVIDQVA 124

Query: 141 AALILQEVLDRISFL 155
           A LILQ  LD  + L
Sbjct: 125 AQLILQGWLDSQALL 139


>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           R6]
 gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           D39]
 gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
           SP9-BS68]
 gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
           SP11-BS70]
 gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
 gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
 gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           JJA]
 gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           P1031]
 gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           70585]
 gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           BS455]
 gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
           SP-BS293]
 gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
           BS397]
 gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
 gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
 gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
 gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
 gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
 gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
 gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
 gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
 gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
 gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
           D39]
 gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
 gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
 gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
 gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
 gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
 gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           BS455]
 gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
           SP-BS293]
 gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
           BS397]
 gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
          Length = 139

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
 gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
          Length = 147

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           +  +D+G++ +G+A+SD  G          + +   +  L+ ++ +  EN +  F++GLP
Sbjct: 4   LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV + +A+   ++  K  +P  F DERLTTV A+++L++  + SRKKR + 
Sbjct: 64  KNMNNTSGPRVEAAKAY-GELLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA+LILQ  LD
Sbjct: 123 IDKLAASLILQNYLD 137


>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
           ATCC 29328]
 gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           53516]
 gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
           ATCC 29328]
 gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           53516]
          Length = 137

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G + IG+AISDP    A     + RK   +    +   I  + ++  I+GLP NMN
Sbjct: 6   GLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNMN 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            + GP+    + FV  +  +   +   + DERLTTVSA ++LI+ NVSRKKR   +DS+A
Sbjct: 66  NTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVA 124

Query: 141 AALILQEVLD 150
           A  ILQ  LD
Sbjct: 125 ATYILQTYLD 134


>gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase
 gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 141

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   DLG   IG+A+SD  +  A  +  + R+ + +   ++   I    ++  I+GLP N
Sbjct: 3   IMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNGS G        F+ ++ +++V +P    DERLT+  A+Q L++ +VSRKKR Q +D 
Sbjct: 63  MNGSLGQMADQIMDFIKSL-EQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVIDK 121

Query: 139 IAAALILQEVLDR 151
           +AA  ILQ  LDR
Sbjct: 122 LAAVNILQTYLDR 134


>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
           27755]
 gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
           27755]
          Length = 144

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G++ +G+A+SDP    A     + RK   K+ +T   +   +    +   ++GL
Sbjct: 3   IMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F   MI R+  +  V WDERLTTVSA++ LI+  V R+ R + 
Sbjct: 63  PKHMNNDIGDRAEKSMQF-GEMIGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRKKY 121

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ  LD
Sbjct: 122 IDQIAAVFILQGYLD 136


>gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase
 gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination
           [Thermoanaerobacter tengcongensis MB4]
          Length = 139

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G K IG+AISD     A     + RK   +    +   +   ++   ++GLP N
Sbjct: 3   VLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           MNGS GP+      F   +  R+V  +P VFWDERLTT+ A++ LI+ +++SR KR + +
Sbjct: 63  MNGSIGPQGEKVIKFGEKL--REVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI 120

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 121 DKLAATIILQSYLD 134


>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
 gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
          Length = 141

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+AISDP    A     + RK   K+ +T   + + I    +   ++GL
Sbjct: 3   IMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F   M+ R+  +  V WDERLTTV A++ LI+  V R+ R + 
Sbjct: 63  PKHMNNDIGDRAERSLEF-GKMLSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 121

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA  ILQ  LD I 
Sbjct: 122 IDKIAAVFILQGYLDSIC 139


>gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens
           16/4]
          Length = 142

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT---QTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+AISDP    A     + R++ +    T + +        +   I+G 
Sbjct: 4   ILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKIILGY 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+ SEG R   T  F   +++++V +P    DERLTTV A +IL +  V++K R + 
Sbjct: 64  PRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDRKKV 122

Query: 136 VDSIAAALILQEVLD 150
           +D IAAA+ILQ+ LD
Sbjct: 123 IDQIAAAIILQDYLD 137


>gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase
 gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 140

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G KRIG+AI+D  R  A P   +    + + AL++L      +++  ++GLPLN
Sbjct: 4   IMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPLN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MNG+EG    + R F+   I     +     DERLTTV A+++LI + ++SR+KR    D
Sbjct: 64  MNGTEGGMAETVRKFIEK-IKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKGIKD 122

Query: 138 SIAAALILQEVLD 150
            + AALILQ  LD
Sbjct: 123 KVVAALILQTYLD 135


>gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
           ATCC 700780]
 gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
           ATCC 700780]
          Length = 136

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + +   Q   + L   + +  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  +VSR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 145

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
            +D+G+K +G+A SDP    A     + + ++     LE ++  + +  +A  ++GLP N
Sbjct: 5   GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV + R +   +++ +  +P  + DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65  MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 124 ELAATLILQNYLDR 137


>gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae
           INV104]
          Length = 136

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
           ZC1]
 gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
           ZC1]
          Length = 138

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+A+SD  G          + +   +  ++ ++ +  E  I  F++G P
Sbjct: 3   IMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  ++  +   +++    +P   WDERLTT++A+++LI+ +VSRKKR Q +
Sbjct: 63  KNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVMILQGYLD 135


>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
           12680]
          Length = 144

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G KRIG+AISD     A P   + R  +      +     T  +   ++GLPLN
Sbjct: 3   ILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NGS G +   +      + +  + +    WDERL+T + Q +L++ + SR+KR + VD 
Sbjct: 63  LNGSRGEKAAQSAKLAQELKEH-LSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVVDK 121

Query: 139 IAAALILQEVLDRIS 153
           +AAA ILQ  LDRI 
Sbjct: 122 LAAAYILQGYLDRIG 136


>gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 254

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 4/131 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G K IG+A++DP    A P   + R+   K+ ++  E+ + ++  ++   +IGL
Sbjct: 3   IMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ +EG R    R F   ++ ++V VP  + DERLTT++A++IL +  V R+++ + 
Sbjct: 63  PLNMDETEGERAEKAREFAA-LLAKRVLVPIEWVDERLTTIAAREILDESGVPREEQKRM 121

Query: 136 VDSIAAALILQ 146
           +D +AA LIL+
Sbjct: 122 IDQVAAQLILE 132


>gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 140

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGL 75
           +  +D G+K +G+AISDP    A     + RK+   + QT   +   ++  ++   ++G 
Sbjct: 3   VLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   +  F   M++R+  +  + WDERLTTV A + L++ +V R+ R Q 
Sbjct: 63  PKNMNNTIGERAQKSLEF-KEMLERRTGLEVIMWDERLTTVEANRTLMEASVRRENRKQY 121

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ  LD +S
Sbjct: 122 LDQLAAVFILQGYLDSLS 139


>gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321]
 gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321]
          Length = 136

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 10/137 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
           MN + GPRV +++A+   +  + D    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  MNNTSGPRVEASQAYGAKLEELFD----LPVDYQDERLTTVAAERMLIEQADISRNKRKK 117

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 118 VIDKLAAQLILQNYLDR 134


>gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 136

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP    A     +   K+ +   +     L   +    +  F+IGL
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEII---KINEDKQDFGFDRLAELVKQYQVDRFVIGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
           P NMN + GPRV +++A+  + I+   ++P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 59  PKNMNNTSGPRVEASKAY-GDRIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 117

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 118 VIDKLAAQLILQNYLD 133


>gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
           2876]
 gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
           2876]
          Length = 144

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G++ +G+A+ DP    A     + RK   K+ QT   +       N    ++GL
Sbjct: 3   IIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G RV  T  F    ++R+  +  V WDERLTTV+A   +++  + R+ R + 
Sbjct: 63  PKNMNNTSGDRVDKTMDF-KAALERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRKEY 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD IAA LILQ  LD ++
Sbjct: 122 VDMIAAQLILQGYLDSLA 139


>gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
 gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
          Length = 140

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 17/140 (12%)

Query: 21  SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
            +D+G+K IG+A+SD            ++  P   +  K+       L + I    +   
Sbjct: 6   GLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKR-------LEAIIKEYGVEII 58

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +IG P NMNGS GPR  ++ AF    I+ +  +  V  DERLTT+ A+++LID +VSRKK
Sbjct: 59  VIGHPKNMNGSIGPRAEASEAFARE-IETQTGLSTVLVDERLTTMQAERMLIDADVSRKK 117

Query: 132 RIQKVDSIAAALILQEVLDR 151
           R Q +D +AA +ILQ  LDR
Sbjct: 118 RKQVIDKMAAVMILQSYLDR 137


>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
           35185]
 gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
 gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
           35185]
 gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
          Length = 149

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G + IG+A SD     A     + RK   +    L   +       FI+GLP N
Sbjct: 5   VLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG++G R    R F   +  +      VFWDERL+TV+A++ LI  +VSR KR + +D 
Sbjct: 65  MNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKVIDK 124

Query: 139 IAAALILQEVLDRISF 154
           +AA  ILQ  LD +  
Sbjct: 125 MAAVFILQGYLDNLGM 140


>gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
 gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
          Length = 155

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTKR+GLAIS P +  A P   + R +  Q + ++        +   ++GLP++M+
Sbjct: 13  GIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRVKGLVVGLPVHMS 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEG +    R F  +       +P ++WDER T+  A   L    +S+ KR + +D +A
Sbjct: 73  GSEGGKAKEARVF-GDWCGEITQLPVIYWDERFTSALADNHLRQSTMSQAKRKKHLDKLA 131

Query: 141 AALILQEVLD 150
           A ++LQ  L+
Sbjct: 132 AQVMLQSFLE 141


>gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
 gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
 gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
 gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
          Length = 136

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
           NEM316]
 gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase
 gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase
 gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase
 gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 139

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + ++      + L+ +  E  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+  + I     +P  + DERLTTV A+++L++  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKV 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA LILQ  LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138


>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
 gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
          Length = 144

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G   IG+AISD     A       RK+       ++       +   +IGLP N
Sbjct: 3   ILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           MNGS GP+     AF   + D     +  V WDERL+TV+AQ+ LI+ +VSR KR + +D
Sbjct: 63  MNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVID 122

Query: 138 SIAAALILQEVLD 150
            +AA  ILQ  LD
Sbjct: 123 KMAAVYILQGYLD 135


>gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
 gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
          Length = 138

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+A+SD  G          + +   +  ++ ++ +  E  I  F++G P
Sbjct: 3   IMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  ++  +   +++    +P   WDERLTT++A+++LI+ +VSRKKR Q +
Sbjct: 63  KNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVMILQGYLD 135


>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 142

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+AISD     A     + RK   K+ +T   + + I    +   ++G 
Sbjct: 3   IMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   + AF  +M++R+  +  + WDERLTTV A++ LI+ NV R++R + 
Sbjct: 63  PKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERKKY 121

Query: 136 VDSIAAALILQEVLDRI 152
           VD IAA  ILQ  LD +
Sbjct: 122 VDKIAAIFILQGYLDSV 138


>gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
           101-4-CHN]
          Length = 146

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 3/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLPLN 78
            +D+G+K +G+A SDP    A     +   +  +      +   +    +A F++GLP N
Sbjct: 5   GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV ++R +   +  R   +P  F DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65  MNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQKKVID 124

Query: 138 SIAAALILQEVLDR 151
            +AA+LILQ  LDR
Sbjct: 125 ELAASLILQNYLDR 138


>gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273]
 gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272]
 gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272]
 gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273]
          Length = 137

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+A+SD  G          + ++      + +S  +    +   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGFLD 135


>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
           Malish 7]
 gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
 gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 154

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 5/149 (3%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
           +++  + L PN P+ +ID G K++G+A+S+  R  A P   +  + KK+  T+L  L+ I
Sbjct: 6   LQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
               +   IIGLP++M+G+   + +    F   +  + + +P    DERLTT +A  +L 
Sbjct: 64  EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLK 122

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
              V RK R    D++AA++IL+ VLD I
Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151


>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
 gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 139

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + +   +   E L+  +    +  F++GLP
Sbjct: 3   IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
            NMN + GPRV +++A+   +  + D    +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 63  KNMNNTSGPRVEASQAYGKKIKELFD----LPVEYQDERLTTVQAERMLVEQADVSRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
           Ellin345]
 gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase
 gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
           Ellin345]
          Length = 153

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D GT+RIGLA+SDP    A     L+RK        L S I    I   ++GLPL 
Sbjct: 11  ILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGLPLR 70

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G++       R F    ++++  +P   WDER T+V A ++L +  +S KKR + VD 
Sbjct: 71  LSGADSSSTEKAREFAA-WLEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEAVDR 129

Query: 139 IAAALILQEVLDR 151
           ++A LILQ  L+R
Sbjct: 130 LSAVLILQAFLER 142


>gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae
           TIGR4]
 gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
           SP23-BS72]
 gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669]
 gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
           BS457]
 gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
           BS458]
 gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B]
 gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
           SP23-BS72]
 gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC
           700669]
 gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae
           OXC141]
 gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae
           INV200]
 gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
           BS458]
 gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
           BS457]
 gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
 gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
 gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
 gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
           GA17545]
 gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
 gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
 gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
 gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
           GA47901]
          Length = 136

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++  Q   + +   + T  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase
 gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98]
          Length = 137

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 11/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF------ITTENIAAFI 72
           I  +D+GTK +G+AISD           L   K+ +   E+  F      +   N+   +
Sbjct: 3   ILGLDVGTKTVGVAISDE---MGWTAQGLETIKINEER-EIFGFDRVSELVKQYNVDKIV 58

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP NMNG+ GPR  + + +  ++ +  + +  + WDERL+T++A+++LI  +VSRKKR
Sbjct: 59  VGLPKNMNGTIGPRGEACQRYAESLREL-LQLEVILWDERLSTMAAERLLISADVSRKKR 117

Query: 133 IQKVDSIAAALILQEVLD 150
            Q VD +AA +ILQ  LD
Sbjct: 118 KQVVDKMAAVVILQGYLD 135


>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
 gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 145

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D GTK +G+A+SD  G          + ++  +   + L   I    +   ++G P
Sbjct: 8   ILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIVVGFP 67

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +T+ F    + +   +P V WDERL+T++A+++LI  +VSRKKR + +
Sbjct: 68  KNMNGTIGPRGEATQRFAEQ-VKQTFSLPVVLWDERLSTMAAERMLIAADVSRKKRKKVI 126

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 127 DKMAAVMILQSYLD 140


>gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
           15053]
 gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
           15053]
          Length = 145

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G K +G+A+SDP    A     + RK   K+ QT   +   I    +   ++GL
Sbjct: 5   IMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F   M+ R+  +  V WDERLTTV A++ LI+  V R+ R + 
Sbjct: 65  PKHMNNDIGDRAEQSLEF-GEMLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 123

Query: 136 VDSIAAALILQEVLDRI 152
           +D IAA  ILQ  LD I
Sbjct: 124 IDKIAAVFILQGYLDSI 140


>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
           16795]
 gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
           16795]
          Length = 141

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SD     A     + R+   +   EL + I    +   + GLP N
Sbjct: 6   IMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+          +I  +  +   FWDERLTTV+A++ LI+ +VSRKKR + +D 
Sbjct: 66  MNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKVIDM 124

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 125 LAAVIILQGYLD 136


>gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
 gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
          Length = 140

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R G+AISD     A P   +      + A ++            ++GLP+N
Sbjct: 3   ILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPIN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG++G R     AF   M+   V V    WDER TTV+A Q L + NV  KKR   VD+
Sbjct: 63  MNGTKGERAEKCEAFAE-MLRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVVDT 121

Query: 139 IAAALILQEVL 149
           +AA +IL+  L
Sbjct: 122 VAATIILESYL 132


>gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
           14019]
 gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC
           14019]
          Length = 166

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            IDLG  R+G A+SDP   FAHP   +     +  A+E +L+ I   +++  +IGLPL +
Sbjct: 15  GIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQL 74

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127
           +G+EG      R +  N++ R             ++P V W DERLTTV+A + L+D + 
Sbjct: 75  DGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDADF 134

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           S +K    VD  +A LILQ  +D
Sbjct: 135 STRKHRPMVDQQSAVLILQSAID 157


>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
 gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
          Length = 143

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 71/132 (53%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G+K IG+A SD     A     + RK        L +  T   +   ++G P +
Sbjct: 5   ILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPRH 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG +   V    AF+  +  +   + FV+WDERLTT+ A+Q+L+   V R+KR Q VD 
Sbjct: 65  MNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQFVDK 124

Query: 139 IAAALILQEVLD 150
           +AA LILQ  LD
Sbjct: 125 MAAILILQNYLD 136


>gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 143

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
            + I  +D G+K IG+AISD     A P   + R    K+ ++   +   +  ++I   +
Sbjct: 2   KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP+NM+G  G R   T  FV  +  R V +P V  DERLTTV A +IL +  V ++ R
Sbjct: 62  VGLPINMDGRSGERAALTLEFVEKLKLR-VDIPIVMQDERLTTVEADEILDESGVKKQDR 120

Query: 133 IQKVDSIAAALILQEVLDR 151
            Q +D IAA +IL+E +++
Sbjct: 121 KQFIDQIAAGIILKEYMEK 139


>gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis
           URRWXCal2]
 gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase
 gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
          Length = 154

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 5/145 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAA 70
           L PN P+ +ID G+K++G+A+S+  R  A P   ++   KK+  T+L  LS I    +  
Sbjct: 13  LIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSL--LSIIEKYKVCG 70

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            +IGLP++M+G+   + +    F   +  + + +P    DERLTT +A   L    V RK
Sbjct: 71  VVIGLPIDMSGAVTEQTNIVMKFAEELA-KSINLPIYLQDERLTTKAANNFLKSFGVKRK 129

Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155
            R    D++AA++IL+ VLD +  L
Sbjct: 130 DRNNNDDAVAASMILETVLDSMKKL 154


>gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143]
 gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143]
          Length = 139

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   Q   + +   + +  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM
           20016]
 gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
 gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
 gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           SD2112]
 gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
 gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
 gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
 gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016]
 gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
 gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
 gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           SD2112]
 gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
          Length = 147

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLP 76
           +  +D+G+K +G+++SDP    A     +   +  +      +   +  E +A F+IGLP
Sbjct: 3   LMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN +EGPRV +++ +   +  R   +P  F DERLTTV A ++L+ + ++SR K+ + 
Sbjct: 63  KNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKKV 122

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA  ILQ  LDR
Sbjct: 123 IDEVAATFILQSYLDR 138


>gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
           14018]
          Length = 156

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            IDLG  R+G A+SDP   FAHP   +     +  A+E +L+ I   +++  +IGLPL +
Sbjct: 5   GIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127
           +G+EG      R +  N++ R             ++P V W DERLTTV+A + L+D + 
Sbjct: 65  DGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDADF 124

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           S +K    VD  +A LILQ  +D
Sbjct: 125 STRKHRPMVDQQSAVLILQSAID 147


>gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300]
 gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300]
          Length = 139

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   Q   + +   + +  +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
           2603V/R]
 gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
           A909]
 gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           18RS21]
 gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           H36B]
 gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           CJB111]
 gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           515]
 gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           2603V/R]
 gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           A909]
 gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           18RS21]
 gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           515]
 gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           CJB111]
 gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           H36B]
 gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
           ATCC 13813]
          Length = 136

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 4/135 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++      + L+ +  E  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+  + I     +P  + DERLTTV A+++L++  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVID 120

Query: 138 SIAAALILQEVLDRI 152
            +AA LILQ  LDR+
Sbjct: 121 KLAAQLILQNYLDRM 135


>gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
           B316]
 gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
           B316]
          Length = 145

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+AISD     A  R  + RK   K+ +T   +   I    +   ++GL
Sbjct: 3   IMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ +   R      F  + I+R+  +P V WDERLTTV A +I+ +  +  + R + 
Sbjct: 63  PLNMDQTPSERSQLCLEF-KDKIERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRKEY 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAA +ILQ+ LD
Sbjct: 122 VDMIAAQIILQDYLD 136


>gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           flueggei ATCC 43531]
 gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           flueggei ATCC 43531]
          Length = 143

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 70/131 (53%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+DLG   IG+A+SD     A     + R  +      L   +    + A + GLP +MN
Sbjct: 6   SLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGLPKHMN 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG R    RAF+  + +        +WDERL+TV+A + LI  +VSRKKR + +D +A
Sbjct: 66  GDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKVIDKMA 125

Query: 141 AALILQEVLDR 151
           A  ILQ  LDR
Sbjct: 126 AVYILQGFLDR 136


>gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
 gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
          Length = 130

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 3/129 (2%)

Query: 24  LGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLNMNG 81
           +GTK +G+A+SD  G          + ++      + +S  +   N+   ++GLP NMNG
Sbjct: 1   MGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNG 60

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
           + GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +D +AA
Sbjct: 61  TIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAA 119

Query: 142 ALILQEVLD 150
            +ILQ  LD
Sbjct: 120 VVILQGFLD 128


>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
 gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
 gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC
           15444]
          Length = 151

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GT  IG+A +D  R  A P   +++KK+  +   LL           I+GLPLN++
Sbjct: 17  GIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLIVGLPLNVD 76

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS GPR  S R  V +++  +  +P  F DER ++  A  I+     +R+ R  ++D+ A
Sbjct: 77  GSMGPRAQSVRTLVSSLLKVR-DLPVTFQDERYSSAEAGDIMRAAGATRRNREARIDASA 135

Query: 141 AALILQEVLDRI 152
           AA+ILQ+ L R+
Sbjct: 136 AAVILQDALSRL 147


>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
 gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
 gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 138

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G + IG+AISDP    A     + R  +     E+        +   + GLP N
Sbjct: 3   ILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F  +++ +++    + WDERLTTV+A + +I+ ++SR KR + VD 
Sbjct: 63  MNGTLGPQSEKVTEFC-DILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRI 152
           IAA  ILQ  LD +
Sbjct: 122 IAAIYILQGYLDSV 135


>gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira
           defluvii]
 gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 203

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q I +ID G+KRIG A+SD     A P     R+        +   +    +   ++G+
Sbjct: 3   GQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVGM 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL ++G  GP       F+  +++  + VP + WDER+TT +A+ +LI  +V R+KR   
Sbjct: 63  PLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKGI 121

Query: 136 VDSIAAALILQEVL 149
           VD IAAA++LQ  L
Sbjct: 122 VDRIAAAILLQSYL 135


>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
 gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
          Length = 150

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +DLGTK +G+A+SD     A       + +      L  LS  I    I   ++G P
Sbjct: 5   ILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            N NG+ GPR  +++ F   +++    VP V WDERLTT +A++ LI  +VSR+KR + +
Sbjct: 65  KNXNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKVI 123

Query: 137 DSIAAALILQEVLDRIS 153
           D  AA  ILQ  LD ++
Sbjct: 124 DKXAAVXILQGYLDSLN 140


>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
           DSM 17678]
 gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
           DSM 17678]
          Length = 138

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G   IG+A+SD     A     + R         L   I    +   + GLP N
Sbjct: 6   IMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F  ++I  ++ +   FWDERLTTVSA+++LI+ +V RK R + +D 
Sbjct: 66  MNGTIGPQAEKVIKFC-DLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKVIDK 124

Query: 139 IAAALILQEVLDRI 152
           +AA LILQ  LD I
Sbjct: 125 LAAVLILQGYLDSI 138


>gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
 gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
          Length = 138

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D G + IG+A+SD     A     + +++       +   +    +   ++GLP NMN
Sbjct: 5   GLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLPKNMN 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            + GPR   + AF   +  + + +P   WDERLTTVSA++ L++ +VSRKKR   +D +A
Sbjct: 65  NTIGPRGEISMAFAEQL-QQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVIDKMA 123

Query: 141 AALILQEVLD 150
           A LILQ  LD
Sbjct: 124 ATLILQNYLD 133


>gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51]
 gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
           hafniense DCB-2]
 gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
 gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
 gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
           DCB-2]
          Length = 142

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G + IG+A+SD     A     + R    +   EL + +    +   ++G P N
Sbjct: 3   IMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYPKN 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR  +T  F   ++  +  +P   WDERL+T+ AQ+ L++ +VSR KR Q +D 
Sbjct: 61  MNGTLGPRAQATEEFAQ-ILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVIDK 119

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  LD I
Sbjct: 120 MAAVFILQGYLDYI 133


>gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
 gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
          Length = 137

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+GTK +G+AISD  G          + ++      + +S  +   N+   ++GLP
Sbjct: 3   ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  + + +  ++ +  + +  + WDERL+T++A+++LI  +VSRKKR Q +
Sbjct: 63  KNMNGTIGPRGEACQQYAESLREL-LQLEVILWDERLSTMAAERLLISADVSRKKRKQVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 122 DKMAAVVILQGYLD 135


>gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
 gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
          Length = 140

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +  +D+G+K IG+A+SD     A      +       +    L  FI   ++   ++G P
Sbjct: 4   VMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGHP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  ++ AF     + +  +P V  DERLTT+ A+++LI  +VSRKKR   +
Sbjct: 64  KNMNGTVGPRGEASEAFAEAFTE-QTGLPCVLVDERLTTMQAERMLISADVSRKKRKAVI 122

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LDR
Sbjct: 123 DKMAAVMILQNYLDR 137


>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
           UA159]
 gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
 gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 139

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +D+G+K +G+A+SDP    A     + + +   +   + L+  +    +  F++GLP
Sbjct: 3   IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
            NMN + GPRV +++A+   +  + D    +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 63  KNMNNTSGPRVEASQAYGKKIKELFD----LPVEYQDERLTTVQAERMLVEQADVSRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138


>gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
 gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           ATCC 49296]
 gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease
           [Streptococcus oralis Uo5]
 gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
 gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           ATCC 49296]
 gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease
           [Streptococcus oralis Uo5]
          Length = 136

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + +   Q   + +   + +  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 156

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
           +++  + L PN P+ +ID G+K++G+A+S+  R  A P   +  + KK+  T+L  L+ I
Sbjct: 6   LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
               +   +IGLP++M+G+   + +    F   + +   + +P    DERLTT +A   L
Sbjct: 64  EKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAANNFL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
               V RK R    D++AA++IL+ VLD I  L
Sbjct: 124 KSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156


>gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
 gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
          Length = 140

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R G+A+SD     A P   +      + A ++      +     I+GLP+N
Sbjct: 3   ILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPIN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG++G R      F  +M+   V V    WDER TTV+A + L + NV  KKR   VD+
Sbjct: 63  MNGTKGVRAEKCEEFA-DMLRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVVDT 121

Query: 139 IAAALILQEVLDRISFLESSKG 160
           +AA +IL+  L   +F    KG
Sbjct: 122 VAATIILESYL---AFRSKHKG 140


>gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT]
 gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase
 gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT]
          Length = 135

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G + IG+A+SDP    A     + RK V +   EL        +   I GLP N
Sbjct: 3   VLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G +      F   ++  ++ +P   WDERLTTV+A + +++ N+SR KR + VD 
Sbjct: 63  MNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVDK 121

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  LD I
Sbjct: 122 MAATYILQGYLDSI 135


>gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
           35037]
 gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
           35037]
          Length = 139

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISDP    A     + + +   Q   + +   +    +  F++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + 
Sbjct: 63  KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137


>gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5]
 gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase
 gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae
           ESF-5]
          Length = 154

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 5/149 (3%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
           +++  + L PN P+ +ID G+K++G+A+S+     A P   +  + KK+  T+L  L+ I
Sbjct: 6   LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSL--LNII 63

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
               +   IIGLP++M+G+   + +    F   +  + + +P    DERLTT +A  +L 
Sbjct: 64  EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLK 122

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
              V RK R    D++AA++IL+ VLD I
Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151


>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 144

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 82/136 (60%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           +  +D+G+K +G+A+SD  G          + ++  +  LE ++  +    +  F++GLP
Sbjct: 3   LMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
            NMN S GPR  ++  +  + +++K  +P  F DERLTTV AQ++L +  ++SR+KR + 
Sbjct: 63  KNMNNSLGPRAEASEQY-GDRLEKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAGLILQNYLDR 137


>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           Lc 705]
 gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
 gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 144

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           +  +D+G++ +G+A+SDP    A     + + +   Q  L+ L   +T   + AF++GLP
Sbjct: 3   LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN S GPR   ++A+  +++     +P  F DERLTTV A ++LI + + SRK++ Q 
Sbjct: 63  KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAQMILQNYLD 136


>gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM
           20544]
 gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM
           20544]
          Length = 138

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 4/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G + IG+A+SD     A     + RK +      L   +      + + GLP NM+
Sbjct: 6   SLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGLPKNMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           G+EG R    + F+  +  +K Y  V   FWDERL+TV+A + LI+ +VSR+KR + +D 
Sbjct: 66  GTEGDRCAIVKEFMAEV--KKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKVIDK 123

Query: 139 IAAALILQEVLD 150
           +AA  ILQ  LD
Sbjct: 124 MAAVFILQGFLD 135


>gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455]
 gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455]
          Length = 140

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+GT RIG+A+SDP   FA      V K       EL       +    ++GLP+ 
Sbjct: 4   IICLDVGTVRIGVAVSDPLGMFAQG--IAVWKADGPWLDELERAFERYDTGCLLVGLPIR 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+ GP     +  V  +  R   V   +WDER +T +A   L++ NVSR+KR Q VD 
Sbjct: 62  EDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQSVDK 121

Query: 139 IAAALILQEVLD 150
           IAAA+ILQ  +D
Sbjct: 122 IAAAVILQSYMD 133


>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           HN001]
 gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           GG]
 gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           HN001]
 gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
 gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
           GG]
          Length = 144

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           +  +D+G++ +G+A+SDP    A     + + +   Q  L+ L   +T   + AF++GLP
Sbjct: 3   LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN S GPR   ++A+  +++     +P  F DERLTTV A ++LI + + SRK++ Q 
Sbjct: 63  KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAQMILQNYLD 136


>gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 142

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G   IG+A+SD     A     + R         L + +    + A + GLP +MN
Sbjct: 6   SLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGLPKHMN 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG R    RAF+     R   V   +WDERL+TV+A + L++ +VSRKKR + +D +A
Sbjct: 66  GDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKMA 125

Query: 141 AALILQEVLDR 151
           A  ILQ  LDR
Sbjct: 126 AVYILQGFLDR 136


>gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 155

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN------IAAF 71
           I S+D G  RIG+AISD  +  A   +     KKV +T  +L+  I          I   
Sbjct: 9   IVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIEEI 68

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLPL M+G +G +      FV  +      +P V WDERLTTV A++ L + + +RKK
Sbjct: 69  VVGLPLLMSGKKGFQADEVLHFVE-LFKAATPIPIVTWDERLTTVQAERALREGSFNRKK 127

Query: 132 RIQKVDSIAAALILQEVLD 150
           R + +D++AA LILQ  LD
Sbjct: 128 RSKVIDAVAAVLILQNYLD 146


>gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 163

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  +  ID G KR+GLA++D G R A PRP L R        E+      E + A ++GL
Sbjct: 28  NVRLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGL 87

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ M+G E       R      I  K  +     DERLT+  AQ  L +  VS KK   K
Sbjct: 88  PIAMDGEETDLSRQVRNLARK-ITSKTGLKVHLMDERLTSAEAQARLREAGVSSKKMKGK 146

Query: 136 VDSIAAALILQEVLDR 151
           +DS AA LIL+  L R
Sbjct: 147 LDSGAAVLILEAYLGR 162


>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
 gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
          Length = 138

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +    +   ++G 
Sbjct: 3   ILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R  +T AF  +++ R+  +  + WDERL+TV++ ++L++  V R+ R + 
Sbjct: 63  PKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA++ILQ  LD
Sbjct: 122 IDQVAASMILQGYLD 136


>gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
           B-14911]
 gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
           B-14911]
          Length = 111

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
           +L   I   +++  ++GLP NMNG+ GPR  +++ F   + +R   +P V WDERLTT++
Sbjct: 17  QLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAGEL-ERLFGLPVVLWDERLTTMA 75

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           A+++L++ +VSRKKR + +D +AA++ILQ  LD
Sbjct: 76  AERVLLEADVSRKKRKKVIDKMAASMILQGYLD 108


>gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus
           C3-41]
 gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus
           C3-41]
          Length = 135

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 79/132 (59%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+A+SD  G          + +   +  ++ ++ +  E  I  F++G P N
Sbjct: 2   GLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPTN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GPR  ++  +   +++    +P   WDERLTT++A+++LI+ +VSR+KR Q +D 
Sbjct: 62  MNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVIDK 120

Query: 139 IAAALILQEVLD 150
           +AA +I+Q  LD
Sbjct: 121 MAAVMIVQGYLD 132


>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
          Length = 150

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           +  +D G+K +G+A+SDP    A     + RK   K+ +T   +   I+   +   ++G 
Sbjct: 3   VLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   +  F   M++++  +P V WDERLTT++A + L +  V ++ R Q 
Sbjct: 63  PKNMNNTVGERAEKSLEF-KEMLEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRKQY 121

Query: 136 VDSIAAALILQEVLDRISF 154
           +D +AA  ILQ  LD  ++
Sbjct: 122 LDQVAAVFILQGYLDAAAY 140


>gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
           str. Hall]
 gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
           str. Langeland]
 gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
           NCTC 2916]
 gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
 gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
           str. Okra]
 gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
           str. 657]
 gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
 gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
 gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
 gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
 gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
 gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
 gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
 gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
           str. Hall]
 gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
           str. Langeland]
 gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
           str. Okra]
 gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
           str. Loch Maree]
 gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
           NCTC 2916]
 gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
 gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
           str. Kyoto]
 gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
           str. 657]
 gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
           str. 230613]
          Length = 137

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  +D+G + IG+AISDP   F       +R+K     LE +  I  +  +   + GLP 
Sbjct: 3   ILGLDIGDRTIGIAISDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  ++I   + +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136


>gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii
           RML369-C]
 gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
           85-389]
 gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase
 gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase
 gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C]
 gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
           85-389]
          Length = 154

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +++  + L PN P+ SID G+K+IG+AIS+  R  A P   +           LL  I  
Sbjct: 6   LQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLLEKIEQ 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 +IGLP++M+G +  +      F   +  + + +P    DERLTT +A   L   
Sbjct: 66  YKACGIVIGLPIDMSGMQTEQSAIVIKFAEEL-TKSINLPIYLQDERLTTKAANNFLKSF 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            + RK+R    D++AA++IL+ VL+ I+ L
Sbjct: 125 GIKRKERNNNDDAVAASMILETVLNSINKL 154


>gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
          Length = 147

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+A+SDP    A     + + +      ++ ++ I  +  +A F++GLP N
Sbjct: 5   GLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           MN +EGPRV ++  +   +  R   +P  F DERLTTV A ++L+ + ++SR K+ + +D
Sbjct: 65  MNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  LDR
Sbjct: 125 EVAATFILQSYLDR 138


>gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
           D16]
 gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
           D16]
          Length = 140

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID G    G+AISDP    A     +  +K      EL   +    +   ++G P N
Sbjct: 3   VMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+EGPR    R F   +       P V WDER TTV A +IL +   + KKR + VD+
Sbjct: 63  MDGTEGPRAQLYRDFAAQVAQATGLEP-VLWDERRTTVDAHRILAEGGKNAKKRKKTVDA 121

Query: 139 IAAALILQEVLD 150
           +AA+LIL+  LD
Sbjct: 122 VAASLILEGYLD 133


>gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
           065]
          Length = 137

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  +D+G + IG+AISDP   F       +R+K     LE +  I  +  +   + GLP 
Sbjct: 3   ILGLDIGDRTIGIAISDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  ++I   + +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136


>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
 gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
          Length = 144

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
           +  +D+G++ +G+A+SDP    A     + + +   Q  L  L   +T   + AF++GLP
Sbjct: 3   LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN S GPR   ++A+  +++     +P  F DERLTTV A ++LI + + SRK++ Q 
Sbjct: 63  KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAQMILQNYLD 136


>gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Oribacterium sinus F0268]
 gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Oribacterium sinus F0268]
          Length = 141

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I ++D G+K +GLAI+DP      P   + R+   K+ +T  E+        +   ++G 
Sbjct: 3   ILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +M+GSEG RV    AF   M+ +K+ +P   +DERL+T+ A++IL +  V + ++ + 
Sbjct: 63  PCHMDGSEGERVERVLAF-QEMLKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQKEV 121

Query: 136 VDSIAAALILQEVL 149
           +D +AA +IL++ L
Sbjct: 122 LDQVAAQVILEDYL 135


>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
           QCD-23m63]
 gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP08]
 gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP07]
 gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP08]
 gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP07]
          Length = 141

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SD     A     + R    +   EL + I  + +   + GLP N
Sbjct: 6   IMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F   ++  +  +   FWDERL+TV+A++ L++ +VSR+KR + +D 
Sbjct: 66  MNGTLGPQGEKVIKFCE-LVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDM 124

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 125 LAAVIILQGYLD 136


>gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
 gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
          Length = 141

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
           ++ I  +D G+K IG+A+SD  G          + ++V    ++ +  +  E NI   ++
Sbjct: 3   DKRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDR 151
             +D +AA LILQ  LD+
Sbjct: 123 DVIDKMAAVLILQTYLDK 140


>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS8232]
 gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           SSI-1]
 gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS10394]
 gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS6180]
 gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS9429]
 gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS2096]
 gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS10750]
 gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           str. Manfredo]
 gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
           ATCC 10782]
 gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
 gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
 gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
 gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
 gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
 gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
 gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
 gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
 gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS10394]
 gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
 gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
           MGAS9429]
 gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS2096]
 gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS10750]
 gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
           Manfredo]
 gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
           ATCC 10782]
          Length = 139

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 10/139 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP    A     +   K+ +   E     L   +    +  F+I
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN + GPRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR
Sbjct: 60  GLPKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +D +AA LILQ  L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137


>gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 143

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 70/131 (53%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+DLG   IG+A+SD     A     + R  +      L   +    + A + GLP +MN
Sbjct: 6   SLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGLPKHMN 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG R    RAF+  + +        +WDERL+TV+A + LI  +VSRKKR + +D +A
Sbjct: 66  GDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKVIDKMA 125

Query: 141 AALILQEVLDR 151
           A  ILQ  LDR
Sbjct: 126 AVYILQGFLDR 136


>gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 136

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 81/134 (60%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + +   Q   + +   +    +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LDR
Sbjct: 121 KLAAQLILQNYLDR 134


>gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
           86-1044]
 gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
           86-1044]
          Length = 148

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN------IAAF 71
           I  ID G KRIGLAISD     A     F   KK+ +T   L+  +          +   
Sbjct: 5   IIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYELKEI 64

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G PL MNG  G        F   +  + + +P + WDERLT+V A++ +++ + +RKK
Sbjct: 65  VVGFPLKMNGKAGFISDEVTLFAETL-SKALSIPIIKWDERLTSVQAERAMMEGSYNRKK 123

Query: 132 RIQKVDSIAAALILQEVLD 150
           R +K+D I+A +ILQ  LD
Sbjct: 124 RTKKLDQISAVIILQNYLD 142


>gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
           10379]
 gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
           10379]
          Length = 142

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
           ++ I  +D G+K IG+A+SD  G          + ++V    ++ +  +  E N+   ++
Sbjct: 3   DKRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA LILQ  LD+++
Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142


>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
 gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
          Length = 146

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SD     A     + R+   K+ +T   +   I    I   I+G 
Sbjct: 3   IMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN S G R   T  F   M+ R+  +  + WDERLTTV++++IL +  V R+ R   
Sbjct: 63  PKNMNNSAGQRAEKTEQF-KEMLIRRTGLNVILWDERLTTVASERILQESGVRREHRKAV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 122 IDQVAAGLILQGYLD 136


>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
           29799]
 gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
           29799]
          Length = 139

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G  R G+AISDP    A     +  +K    A E+   +    +   ++G P N
Sbjct: 3   IMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+EGPR    RAF   +       P V WDER TTV A  IL       K+  + VD+
Sbjct: 63  MDGTEGPRAELYRAFAQQVGQVTGLTP-VLWDERRTTVEAHNILHASGKRMKQHKKTVDA 121

Query: 139 IAAALILQEVLDR 151
           +AA LIL+  L R
Sbjct: 122 VAATLILEGYLTR 134


>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
           15579]
 gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
           15579]
          Length = 137

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           I  +D+G + IG+A+SDP   F       +R+K     LE +  I  +  +   + GLP 
Sbjct: 3   ILGLDIGDRTIGVALSDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  ++I   V +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLEFC-DLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 121 KMAATYILQGYLDSLS 136


>gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           COH1]
 gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           COH1]
          Length = 136

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP    A     + + ++      + L+ +  E  +  F++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPRV +++ +  + I     +P  + DERLTTV A+++L++  ++SR KR + +D
Sbjct: 62  MNNTSGPRVEASQVY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVID 120

Query: 138 SIAAALILQEVLDRI 152
            +AA LILQ  LDR+
Sbjct: 121 KLAAQLILQNYLDRM 135


>gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
 gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
          Length = 143

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D G  R G+A+SDP    A P   +     TQ   +    +        ++GLP N
Sbjct: 3   VMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GPR    +AF    ++    VP + +DER TT++AQ      N   KKR   +D+
Sbjct: 63  MNGTLGPRAEKAQAFAK-ALEAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSIDA 121

Query: 139 IAAALILQEVLDRI 152
            AA +ILQ+ LD +
Sbjct: 122 AAATIILQDYLDSV 135


>gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis
           m4-4]
          Length = 138

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 81/135 (60%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+GT+ +G+A+SD  G          + +++     E +  +  E  ++  ++GLP
Sbjct: 3   IMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  +++ +   + + K  +P  ++DERLTT+ A+++LI+ +VSR KR + +
Sbjct: 63  KNMNNTMGPRGEASQRYGEGLRE-KFGIPVDYYDERLTTMQAERVLIEADVSRGKRKKVI 121

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LDR
Sbjct: 122 DKMAAVMILQGYLDR 136


>gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 142

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
             I  +D+G++ +G+AISD     A     L + ++  +  + +L+  I   N++  +IG
Sbjct: 4   HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   +++    +  V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 64  LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141


>gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
 gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
          Length = 143

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           +  +D G+K +G+AISDP    A     + RK   K+ QT   +   +    +   ++G 
Sbjct: 3   VMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN + G R   +      M++R+  +P + WDERLTT+ A++ LI+  V R+ R + 
Sbjct: 63  PKHMNNTIGDRAEKSLEL-KAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRKKY 121

Query: 136 VDSIAAALILQEVLDRI 152
           VD IAA  ILQ  LD I
Sbjct: 122 VDKIAAVFILQGYLDSI 138


>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
 gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
          Length = 144

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           +  +D+G+K +G+A+SD  G          + +   +  L+ +S  +    +  F++GLP
Sbjct: 3   LMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN S GPR  +++ +   + D K  +P  F DERLTTV AQ++L  + +VSR KR + 
Sbjct: 63  KNMNNSLGPRAEASQQYGKRLED-KFNLPVDFEDERLTTVEAQRMLTEEADVSRAKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 122 IDKLAAGLILQNYLDR 137


>gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325]
 gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325]
          Length = 142

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIG 74
           + I  +D G+K IG+A+SD  G          + +++    ++ +  +  E N+   I+G
Sbjct: 4   KRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIVG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR  
Sbjct: 64  LPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRKN 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA LILQ  LD+++
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142


>gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           RF122]
 gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase
 gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122]
          Length = 142

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
             I  +D+G++ +G+AISD     A     L + ++  +  + +L+  I   N+   +IG
Sbjct: 4   HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   +++    +  V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 64  LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD +
Sbjct: 124 LIDKMAAVFILQGYLDSL 141


>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
           GAS]
 gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS5005]
 gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
 gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
           MGAS5005]
          Length = 139

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 10/139 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP    A     +   K+ +   E     L   +    +  F+I
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN + GPRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR
Sbjct: 60  GLPKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +D +AA LILQ  L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137


>gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763]
 gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719]
 gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
 gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
 gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
 gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
 gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117]
 gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus 132]
 gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
 gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
 gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
 gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus MN8]
 gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase
 gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase
 gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase
 gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase
 gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase
 gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase
 gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase
 gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase
 gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase
 gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase
 gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase
 gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase
 gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763]
 gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719]
 gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
 gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
 gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
 gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
 gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117]
 gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
 gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
 gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
 gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           O11]
 gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           O46]
 gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 142

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
             I  +D+G++ +G+AISD     A     L + ++  +  + +L+  I   N+   +IG
Sbjct: 4   HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   +++    +  V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 64  LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141


>gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
 gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
          Length = 142

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 9/141 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL-----LSFITTENIAAFII 73
           I  +D+G+K +G+A+SD           L   ++ + A +L     L  +    +   +I
Sbjct: 5   IMGLDVGSKTVGVAVSDL---MGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVI 61

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132
           GLP NMN S GPR  ++ A+   +   +  +   + DERLTT  A+++L+ + NVSRKKR
Sbjct: 62  GLPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKR 121

Query: 133 IQKVDSIAAALILQEVLDRIS 153
            Q +D +AA +ILQ  LDRI+
Sbjct: 122 KQVIDKLAAVIILQNYLDRIN 142


>gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
           F0399]
 gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
           F0399]
          Length = 138

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 71/131 (54%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G   IG+A+SD     A     + R  +      L + +    + A + GLP +MN
Sbjct: 2   SLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHMN 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG R    RAF+         V   +WDERL+TV+A + L++ +VSRKKR + +D +A
Sbjct: 62  GDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKMA 121

Query: 141 AALILQEVLDR 151
           A  ILQ  LDR
Sbjct: 122 AVYILQGFLDR 132


>gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC
           11862]
          Length = 144

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 10/139 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFII 73
           +  +D+G++ +G+A+SD     A     +   ++ +   E       E +A      F++
Sbjct: 4   VMGLDVGSRTVGVAVSDLLGWTAQGVEII---RINEDEKEFGIARMKELVAQFQPTGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
           GLP NMN + GPRV + RA+  +++     +P  F DERLTTV A+++L++  + SRKKR
Sbjct: 61  GLPKNMNNTSGPRVDAARAY-GDLLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119

Query: 133 IQKVDSIAAALILQEVLDR 151
            Q +D +AAALILQ  LDR
Sbjct: 120 KQVIDKLAAALILQNYLDR 138


>gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5]
 gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5]
          Length = 148

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+AISD     A     + RK   K+ +T   +   ++   +   ++G 
Sbjct: 3   IMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F  +M+ R+  +  + WDERLTTV A++ LI+ NV R+ R + 
Sbjct: 63  PKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRKKY 121

Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
           +D IAA  ILQ  LD + +L+   G
Sbjct: 122 IDKIAAIFILQGYLDSV-YLQRQAG 145


>gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630]
 gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
           QCD-66c26]
 gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
           107932]
 gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
           QCD-63q42]
 gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
           43255]
 gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
           QCD-76w55]
 gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
           QCD-97b34]
 gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
           QCD-37x79]
 gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196]
 gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291]
 gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
           QCD-32g58]
 gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
 gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile]
 gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
 gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
          Length = 141

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G K IG+A+SD     A     + R    +   EL + I  + +   + GLP N
Sbjct: 6   IMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+      F   ++  +  +   FWDERL+TV+A++ L++ +VSR+KR + +D 
Sbjct: 66  MNGTLGPQGEKVIKFCE-LVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDM 124

Query: 139 IAAALILQEVLD 150
           +AA +ILQ  LD
Sbjct: 125 LAAVIILQGYLD 136


>gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
           str. Madrid E]
 gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase
 gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii]
 gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia
           prowazekii Rp22]
          Length = 156

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 5/149 (3%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
           +++  + L PN+P+ +ID G+K+IG+A+SD     A P   +  V KKV  T+  LL+ I
Sbjct: 6   LQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITS--LLNII 63

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
               +   +IGLP++M+G    + +    F   +  + + +P    DERLTT SA   L 
Sbjct: 64  KKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAEKL-KQSLGLPIYLQDERLTTKSANNFLK 122

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
              + RK R    D++AA++IL+ VL+ I
Sbjct: 123 SFGIKRKDRNHNDDAVAASMILEIVLNAI 151


>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
           casseliflavus ATCC 12755]
          Length = 143

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G++ +G+A+SDP    A     + + +       + L+ +  E  ++ F++GLP
Sbjct: 3   IMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPR  ++ A+    I+++  +P V+ DERLTTV A+++L++  N SR KR + 
Sbjct: 63  KNMNNTIGPRAEASMAY-GAAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAVMILQNYLD 136


>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
 gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
          Length = 153

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D GT RIGLAI+DP ++FA P     R+     A         E  AA+++GLP++  
Sbjct: 12  GVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGLPVHTT 71

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSE  +    R F    ++    +P   +DER T+  A+++LI   +SRK+R   +D +A
Sbjct: 72  GSESQKSTEARQFA-KQLEELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSHLDKLA 130

Query: 141 AALILQEVL 149
           A ++L   L
Sbjct: 131 AQILLSAFL 139


>gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
 gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
          Length = 168

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D G K IGLA++D     A P   L  +   +   +L   I    ++  I+GLP N
Sbjct: 25  ILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPRN 84

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS GP     R FV  +  + + +P  F DERLTT  A ++L     + +++ +K+DS
Sbjct: 85  MDGSYGPAAEKVRQFVLKL-KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKIDS 143

Query: 139 IAAALILQEVLD 150
            AAA+ILQ  LD
Sbjct: 144 YAAAVILQSYLD 155


>gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 142

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G++ +G+AISD     A     L + ++  +  ++ L+  I  EN+   +IG
Sbjct: 4   HKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +R   +  + WDERL+T++A++ L++ +VSR KR +
Sbjct: 64  LPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRKK 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ  LD ++
Sbjct: 124 VIDKMAAVFILQGYLDGLN 142


>gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 138

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 11/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+GTKRIG+A+SDP    A P  ++  K        + S I ++N++  +IGLP+ 
Sbjct: 4   ILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGLPIT 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           + G +G +V  T+ F   +   K Y+P    VF DER TT  A++ L      +KK I+ 
Sbjct: 62  LKGLQGQQVEYTKEFAEKL---KHYIPHINIVFIDERFTTSLAEKHL--SQTKKKKNIKD 116

Query: 136 -VDSIAAALILQEVLDRISF 154
            +DS++A  ILQ  LD +SF
Sbjct: 117 YIDSLSAVFILQTYLDSLSF 136


>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
 gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
          Length = 138

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+A+SD     A P   + RK   K+ +T   +        +   ++G 
Sbjct: 3   ILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R  +T AF  +++ R+  +  + WDERL+TV++ ++L++  V R+ R + 
Sbjct: 63  PKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA++ILQ  LD
Sbjct: 122 IDQVAASMILQGYLD 136


>gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
 gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
          Length = 140

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K +G+A+SDP    A     + RK   K+ +T  ++   +    I   ++G 
Sbjct: 3   ILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R      F   M+ ++  +  + WDERLTTVSA + L++  V R+ R + 
Sbjct: 63  PKNMNNTVGERAEKALEF-GEMLKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRKEY 121

Query: 136 VDSIAAALILQEVLDRISF 154
           +D IAA  ILQ  LD +  
Sbjct: 122 LDGIAAVFILQGYLDSLKM 140


>gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 144

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPL 77
           I  +DLG+K  G+A+SD    +AHP   L  K  + +    L S I  E +    +G P 
Sbjct: 5   IIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGFPK 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            MN   G R   +  F    ++       V  DERLT+V A + LID +VSRKKR + VD
Sbjct: 65  MMNNDVGERAQISEEF-KKTLESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKVVD 123

Query: 138 SIAAALILQEVLDRISFLESS 158
            +AA  ILQ  LD+  F+E +
Sbjct: 124 QLAAVHILQTYLDKRRFMEGN 144


>gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
 gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
          Length = 138

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 79/134 (58%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITT-ENIAAFIIGLP 76
           I  +D+G+K +G+A+SD  G          + +   +   + ++ +     +   ++G P
Sbjct: 3   IMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVGFP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + GPR  +++ +   +  +++ +P + WDERL+T  A++IL++ +VSRKKR + +
Sbjct: 63  KNMNNTIGPRAEASKVYAEEL-KKRLNLPVILWDERLSTAQAERILLEADVSRKKRKKVI 121

Query: 137 DSIAAALILQEVLD 150
           D +AA++ILQ  LD
Sbjct: 122 DKMAASVILQGFLD 135


>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS315]
 gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
          Length = 136

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 10/137 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP    A     +   K+ +   E     L   +    +  F+IGL
Sbjct: 2   GLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVIGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
           P NMN + GPRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 59  PKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 117

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  L+R
Sbjct: 118 VIDKLAAQLILQNYLNR 134


>gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           WCFS1]
 gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           JDM1]
 gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase
 gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus
           plantarum WCFS1]
 gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           JDM1]
 gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 144

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           +  +D+G++ +G+AISD     A     + + +   +  ++ ++ +  E +   F++GLP
Sbjct: 3   LMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
            NMN + GPR  + + +   ++  + ++P  F DERLTTV A+++L++  N SRKKR + 
Sbjct: 63  KNMNNTLGPRAEAAQHY-GELLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRKKV 121

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA+LILQ  LDR
Sbjct: 122 IDKLAASLILQNYLDR 137


>gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341]
 gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341]
          Length = 142

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
           ++ I  +D G+K IG+A+SD  G          + +++    ++ +  +  E N+   ++
Sbjct: 3   DKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA LILQ  LD+++
Sbjct: 123 DVIDKMAAVLILQTYLDKLN 142


>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
           17241]
 gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
           17241]
          Length = 142

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R GLA  D     A P   L  K       ++ +  +  ++   I+G P+N
Sbjct: 3   ILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPIN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+EGPR      F   +  + V VP   WDER TTVSA   L   N   KKR + +D 
Sbjct: 63  MNGTEGPRAQLCADFAGQLA-KLVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVIDE 121

Query: 139 IAAALILQEVLD 150
           +AA +IL+  L+
Sbjct: 122 VAATIILESYLN 133


>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 138

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77
           I  +D+G   IG+AISD     A P    ++++  + A E +  I  EN +   ++GLP 
Sbjct: 4   ILGLDVGDVWIGVAISDALMLTAQP-LMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           NMN + GP+      F   + ++ KV + +V  DER+TT+ A+Q+LI+ +V R+ R + +
Sbjct: 63  NMNNTIGPQSEKVIKFAEKLKNKFKVEIEYV--DERMTTLMAEQVLIEGSVRRENRKKYI 120

Query: 137 DSIAAALILQEVLDRISF 154
           D IAA  ILQ  LDRI+ 
Sbjct: 121 DKIAATYILQSYLDRINL 138


>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
 gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
          Length = 144

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 4/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I  +D+G++ +G+A+SD     A     + + +   +  ++ +   +       F++GLP
Sbjct: 4   ILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVLGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN + GPRV ++RA+   ++     +P  F DERLTTV A+++LI + + SRKKR + 
Sbjct: 64  KNMNNTSGPRVDASRAY-GELLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKRKKV 122

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LDR
Sbjct: 123 IDKLAAGLILQNYLDR 138


>gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
           Wilmington]
 gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase
 gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str.
           Wilmington]
          Length = 156

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 1/147 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +++  + L PN+P+ +ID G+K+IG+A+SD     A P   +           LL+ I  
Sbjct: 6   LQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLLNIIEK 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   +IGLP++M+G    + +    F   +  + V +P    DERLTT SA   L   
Sbjct: 66  YQVCGIVIGLPIDMSGGVTKQTNIVMKFADKL-KQSVSLPIYLQDERLTTKSANNFLKSF 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
            + RK R    D++AA++IL+ VL+ I
Sbjct: 125 GIKRKDRNNNDDAVAASMILEIVLNAI 151


>gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 140

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP   F      +   K+ + A +     L   I    +   +I
Sbjct: 3   IMGLDVGSKTVGVAISDP---FGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVI 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
           GLP NMN +EGPR  ++R +  +M      +P  + DERLTT  +++ LI+  +VSRKKR
Sbjct: 60  GLPKNMNNTEGPRAEASRHY-GDMAIELFDLPVFYQDERLTTQQSERFLIEAADVSRKKR 118

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA LILQ  LD
Sbjct: 119 KKVIDKLAAVLILQNYLD 136


>gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
           3645]
 gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
           3645]
          Length = 159

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLP 76
           IA ID GT RIG+AI+DP R  A P     R+  K+ +   E L+ +  E I  F++GLP
Sbjct: 15  IAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKL--ERIVLFVVGLP 72

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           ++M+G+E  +    R F    + R   VP V++DER TT  A+  L  + ++++K+   +
Sbjct: 73  VHMSGNESGKSGEARKF-GQWLGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKKKAVI 131

Query: 137 DSIAAALILQEVLD 150
           D +AA ++L   L+
Sbjct: 132 DKLAAQILLTAYLE 145


>gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
           str. Iowa]
 gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase
 gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase
 gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa]
          Length = 154

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +++  + L PN P+ +ID G+K++G+A+S+     A P   +           LL+ I  
Sbjct: 6   LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLLNIIEK 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   IIGLP++M+G+   + +    F   +  + + +P    DERLTT +A  +L   
Sbjct: 66  YKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLKSF 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
            V RK R    D++AA++IL+ VLD I
Sbjct: 125 GVKRKDRNNNDDAVAASMILETVLDSI 151


>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
 gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
          Length = 139

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 10/140 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
           +  +D+G+K +G+AISDP    A     + + +       + L   +    +  F++GLP
Sbjct: 3   LMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
            NMN + GPRV +++A+   +  + D    +P  + DERLTTV A+++L++  +VSR KR
Sbjct: 63  KNMNNTSGPRVEASQAYGEKIAELFD----IPVDYQDERLTTVQAERMLVEQADVSRGKR 118

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D +AA LILQ  L+R+
Sbjct: 119 KKVIDKLAAQLILQNYLERM 138


>gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 140

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 81/133 (60%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G++ +G+A+SDP    A     + + +       + L+ +  E  ++ F++GLP N
Sbjct: 2   GLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPR  ++ A+    I+++  +P V+ DERLTTV A+++L++  N SR KR + +D
Sbjct: 62  MNNTIGPRAEASMAY-GAAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVID 120

Query: 138 SIAAALILQEVLD 150
            +AA +ILQ  LD
Sbjct: 121 KLAAVMILQNYLD 133


>gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 140

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G K IG+A+SDP    A     + R+ +     E+   I    +   ++G P NMN
Sbjct: 5   GLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFPKNMN 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139
           G+ G +      FV   +  ++ +P + WDERLTTV A ++L++  ++ R KR + +D +
Sbjct: 65  GTIGAQGQKVINFVE-YLKEEIDLPIMLWDERLTTVEANRMLVENADMRRDKRKKVIDKL 123

Query: 140 AAALILQEVLD 150
           AA +ILQ  LD
Sbjct: 124 AATIILQGYLD 134


>gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus
           lugdunensis M23590]
 gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus
           lugdunensis M23590]
          Length = 142

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 10/142 (7%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G+K +G+AISD     A     L + ++  +  +E L + I + N+   +IG
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVIG 63

Query: 75  LPLNMNGSEGPR----VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           LP NMN S G R    +H     +  M D KV    + WDERL+T++A++ L++ +VSR+
Sbjct: 64  LPKNMNNSIGFRGEASIHYKELILEAMPDMKV----IMWDERLSTMAAERSLLEADVSRQ 119

Query: 131 KRIQKVDSIAAALILQEVLDRI 152
           KR + +D +AA  ILQ  LD I
Sbjct: 120 KRKKVIDKMAAVFILQGYLDSI 141


>gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G K IG+AISDP    A     + R  +    LE+     +      ++G P NMN
Sbjct: 5   GLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFPKNMN 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139
           G+ G +      FV  ++ +++ +P + WDERLTTV A ++LI+  ++ R KR + +D +
Sbjct: 65  GTIGSQGQKVINFVE-VLKKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKVIDKL 123

Query: 140 AAALILQEVLD 150
           AA +ILQ  LD
Sbjct: 124 AATIILQGYLD 134


>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
 gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
          Length = 148

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D GTK +G+AISD     A     + RK   K+ +T   +   +    +   ++G 
Sbjct: 3   IMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MN   G R   +  F   M+ R+  +  V WDERLTTV A++ LI+  V R+ R Q 
Sbjct: 63  PKHMNNDVGERAKKSLEF-KEMLVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRKQY 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D IAA  ILQ  LD I
Sbjct: 122 IDKIAAVFILQGYLDSI 138


>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           NZ131]
 gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
 gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
          Length = 139

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 10/139 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP    A     +   K+ +   E     L   +    +  F+I
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN + GPRV ++  +  + I+    +P  + DERLTTV A+++LI+  ++SR KR
Sbjct: 60  GLPKNMNNTNGPRVDASITY-GSHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +D +AA LILQ  L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137


>gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 144

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I ++D+G+ RIG+AISDP   FA    FL  +      L LL  I   N+   +IGLP
Sbjct: 2   EHILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLTLL--IRKHNVKKVVIGLP 59

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +  NG +     +       + ++   + F+ WDER TT  AQ  L D  +S KK+  +V
Sbjct: 60  IRTNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNRV 119

Query: 137 DSIAAALILQEVLD 150
           D IAA ++LQ  LD
Sbjct: 120 DMIAATVLLQSYLD 133


>gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein
           [Rhodopirellula baltica WH47]
          Length = 173

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 7/141 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +AS+D GT RIG+AI DP    A P        + + A   +    +E IAA+++GLP++
Sbjct: 18  LASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFIDLAKSERIAAWVVGLPIH 77

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G E  +   +R F    +     +P   +DER TTV+A   +     +RKK  Q+VD+
Sbjct: 78  CDGGESDKSKESRKFA-AWLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTKQRVDA 136

Query: 139 IAAALILQEVLDRISFLESSK 159
           +AA ++L+      SFLE+ +
Sbjct: 137 VAAQVLLE------SFLEACR 151


>gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase
 gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 142

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G+K +G+AISD     A     L + +++    +E L++ I   N+ + +IG
Sbjct: 4   HKILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD I
Sbjct: 124 VIDKMAAVFILQGYLDSI 141


>gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma
           citri]
          Length = 139

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G+K +GLA S       +           Q A  L   ITTE  +  I+G P NMN
Sbjct: 7   AVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNMN 66

Query: 81  GSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + GPR      FV+    ++D  + +  V  DERLTT  A QI+++ N+SR+KR QK D
Sbjct: 67  NTIGPRALMVSDFVNLLKQLLDPTITIHLV--DERLTTHQAHQIMLEANLSRQKRKQKKD 124

Query: 138 SIAAALILQEVLDR 151
           S+AA LIL+  L +
Sbjct: 125 SLAAQLILETYLHQ 138


>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
 gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
 gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
 gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
 gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
 gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
          Length = 153

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q I ++D+G +RIG+AISD   R A P   +      +   +++  +    ++  ++GL
Sbjct: 3   DQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL M G  GP+    + F  + +   +  P   +DERLT+V+A+Q+L ++ +   K   +
Sbjct: 63  PLTMRGERGPQAEVVQRFA-DTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQ 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136


>gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 142

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G+K +G+AISD     A     L + +   +  +E L+  I    +   +IG
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ  LD IS
Sbjct: 124 VIDKMAAVFILQGYLDSIS 142


>gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL J2-064]
          Length = 124

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 1/83 (1%)

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +   ++GLP NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +V
Sbjct: 40  VEKVVVGLPKNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADV 98

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           SRKKR + +D +AA +ILQ  LD
Sbjct: 99  SRKKRKEVIDKLAAVMILQSYLD 121


>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
 gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
 gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
          Length = 142

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q I  +D+G +RIG+AISD   R A P   +      +   ++   +    +   ++GL
Sbjct: 3   EQTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL M G  GP+  + + FV + +   +  P   +DERLT+V+A+Q+L ++ V   K  ++
Sbjct: 63  PLTMRGEHGPQAAAIQRFV-DALAAVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQ 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136


>gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
           27750]
 gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
 gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
           27750]
          Length = 140

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 10/144 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D+GTK +G+A+SDP    A P   + RK   K+ +T   +   I+  ++   ++G 
Sbjct: 3   IIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+ + G R  +   F    ++R+  +P   WDERLTTV A ++L +  + R+ R   
Sbjct: 63  PKNMDDTIGERAKACEEFAA-ALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKTV 121

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           +D +AA  IL+       ++ES +
Sbjct: 122 IDQLAAVFILR------GYMESKQ 139


>gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase
          Length = 150

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 9/144 (6%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------E 66
           KP++ I  ID G  RIGLA SD  +  A P   +   KK  QT ++LL  I+        
Sbjct: 6   KPSR-ILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKC 64

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            I   +IGLPL M+G  G      + F   ++ +   +P   WDERLTTV A++ L +  
Sbjct: 65  EIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           ++RKKR + VD ++A++ILQ  LD
Sbjct: 124 LTRKKRSKVVDIVSASIILQSYLD 147


>gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
 gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
          Length = 157

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G  RIG+A+SDP    A     L           +   I    +   ++GLP N
Sbjct: 4   ILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGLPRN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+ S G +   T  F   +  R V VP   WDERLTTV A++ LID  + R +R + VD 
Sbjct: 64  MDASLGAQGRYTEEFAEKLRHR-VRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKVVDQ 122

Query: 139 IAAALILQEVLD 150
           +AA ++LQ  LD
Sbjct: 123 VAATVLLQSYLD 134


>gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS10270]
 gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
 gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS10270]
          Length = 139

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 10/139 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I  +D+G+K +G+AISDP    A     +   K+ +   E     L   +    +  F+I
Sbjct: 3   IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN +  PRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR
Sbjct: 60  GLPKNMNNTNSPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +D +AA LILQ  L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137


>gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a]
 gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction
           resolvase [Frankia alni ACN14a]
          Length = 205

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +D+G+ R+G+A SDPG   A P   L R K     +E L+  +        ++GLP  M
Sbjct: 33  GVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVVGLPRQM 92

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG  V   R +V  + +R   VP  F DERLTTV+A + + +  V  + R   VD  
Sbjct: 93  SGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQE 152

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 153 AAVQILQHDLD 163


>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
           27405]
 gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
           2360]
 gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
 gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
 gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
           27405]
 gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
           2360]
 gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
 gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
           1313]
          Length = 141

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           +  ID G  RIG+AISDP    A     +  +   +  L+ +S +  E  +   I+G P 
Sbjct: 3   VLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGFPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+ G R   T  F+  +  R   +  + WDERLTTV+A + + +M + + K+   VD
Sbjct: 63  NMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLVVD 122

Query: 138 SIAAALILQEVLD 150
            IAA  ILQ  LD
Sbjct: 123 QIAAVYILQGYLD 135


>gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1]
 gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase
 gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease
           [Rhodopirellula baltica SH 1]
          Length = 173

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 13/144 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +AS+D GT RIG+AI DP    A P    P    +K  Q  ++L     +E IAA+++GL
Sbjct: 18  LASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAK---SERIAAWVVGL 74

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P++ +G E  +   +R F    +     +P   +DER TTV+A   +     +RKK  Q+
Sbjct: 75  PIHCDGGESDKSKESRKFA-AWLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTKQR 133

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           VD++AA ++L+      SFLE+ +
Sbjct: 134 VDAVAAQVLLE------SFLEACR 151


>gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC
           7421]
 gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase
 gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421]
          Length = 156

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G+KRIG+A  DP    A     +VR  +      +  +I      A +IGLP N
Sbjct: 6   VLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPRN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNGS GP+ H  + F   +  R + VP  + DERL+TV A + L  ++ +R+K +  +D 
Sbjct: 66  MNGSLGPQAHRIQHFGQQLA-RVIDVPIDYVDERLSTVQAGRALQSVSATRRKAL--IDQ 122

Query: 139 IAAALILQEVLD 150
            AAA+ILQ+ LD
Sbjct: 123 QAAAIILQQWLD 134


>gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519]
 gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii]
          Length = 139

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G KRIG+A+SD     A P   L RK   +   E+   I  E+I   ++GLP N
Sbjct: 4   ILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+ SEG +   TR F   ++++    +  ++ DERLT+  A+Q L  M +++ K  + +D
Sbjct: 64  MDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKKLID 123

Query: 138 SIAAALILQEVLD 150
           + AA  ILQ  LD
Sbjct: 124 TAAAVHILQGYLD 136


>gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
 gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
          Length = 142

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75
           I  +D+G+K +G+AISD     A     L R    Q  L   EL+  I    +   +IGL
Sbjct: 6   IIGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQNELGIEELVDIIKKNQVGTVVIGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR + 
Sbjct: 65  PKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKV 124

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA  ILQ  LD I
Sbjct: 125 IDKMAAVFILQGYLDSI 141


>gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
 gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
          Length = 138

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G  R+G+A+SDPG R A P   L   +V   A      +        + GLP  
Sbjct: 3   IMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLPYT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M G+EGP+    R     + D    +P+ F DERL++  A++ L +  ++ K    K+D 
Sbjct: 63  MAGAEGPQAARIRKVAKTISD-ACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKIDM 121

Query: 139 IAAALILQEVLD 150
           IAA+L LQ  LD
Sbjct: 122 IAASLFLQAWLD 133


>gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase
 gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 142

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G+K +G+AISD     A     L + ++  +  +E L+  I  +N+   +IG
Sbjct: 4   HKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141


>gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
          Length = 142

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
             I  +D+G+K +G+AISD     A     L R    Q  L   +L+  I    +   +I
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + D    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRI 152
           + +D +AA  ILQ  LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141


>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402]
 gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 139

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G+K IG+A+SD     A     L + +      +E L   I T N+   +IGLP N
Sbjct: 6   GLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP   ++  F   +      +  + WDERL+TV A++ L++ +VSRKKR Q +D 
Sbjct: 66  MNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVIDK 125

Query: 139 IAAALILQEVLD 150
           +AA  ILQ  L+
Sbjct: 126 MAAVFILQGYLN 137


>gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
           ATCC 25644]
 gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
           ATCC 25644]
          Length = 148

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
            +D+G++ +G+A+SD     A     + + ++     +E +   +   ++  F++GLP N
Sbjct: 6   GLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVLGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPR  +++A+   +I+    +P  F DERLTTV A+++L++  + SRKKR + +D
Sbjct: 66  MNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKRKKVID 124

Query: 138 SIAAALILQEVLD 150
            +AA+LILQ  LD
Sbjct: 125 KLAASLILQNYLD 137


>gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera
           micronuciformis F0359]
 gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera
           micronuciformis F0359]
          Length = 138

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G+K IG+A SD     A     L R+   +  L L      + +   ++G P +
Sbjct: 3   ILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKPSH 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG +         FV  +         V+WDERLTTV AQ+ L++  V R+KR   VD+
Sbjct: 63  MNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVVDT 122

Query: 139 IAAALILQEVLD 150
           IAA  ILQ  LD
Sbjct: 123 IAAVFILQNYLD 134


>gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
 gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
          Length = 140

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 10/137 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+A+SDP   F      +   K+ +T  E     +   I    +   +IGL
Sbjct: 5   GLDVGSKTVGVAVSDP---FGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
           P NMN S GPR  ++  +   +I     +P +  DERLTTV A+++LI+  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA +ILQ  L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137


>gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3]
          Length = 149

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL-PL 77
           I ++D G    GLA  D  +  A P   ++ ++  QT +E ++    E     ++   P+
Sbjct: 3   IMAVDYGDAHTGLACCDRTQTLASP-IGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    R F  +M+   + +P V WDER TTV+A  ++ D+N   K+R + +D
Sbjct: 62  NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120

Query: 138 SIAAALILQEVLD 150
           ++AAA+ILQ  LD
Sbjct: 121 AVAAAVILQNYLD 133


>gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
 gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
 gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum
           V10Sc8a]
          Length = 149

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL-PL 77
           I ++D G    GLA  D  +  A P   ++ ++  QT +E ++    E     ++   P+
Sbjct: 3   IMAVDYGDAHTGLACCDRTQTLASP-IGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    R F  +M+   + +P V WDER TTV+A  ++ D+N   K+R + +D
Sbjct: 62  NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120

Query: 138 SIAAALILQEVLD 150
           ++AAA+ILQ  LD
Sbjct: 121 AVAAAVILQNYLD 133


>gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
 gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
          Length = 142

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 2/136 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIGLP 76
           I  +D+G+K +G+AISD     A     L + ++  +  +E L+  I    +   +IGLP
Sbjct: 6   IIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVIGLP 65

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR + +
Sbjct: 66  KNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKVI 125

Query: 137 DSIAAALILQEVLDRI 152
           D +AA  ILQ  LD I
Sbjct: 126 DKMAAVFILQGYLDSI 141


>gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
 gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
 gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
 gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
          Length = 138

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G  R+G+A+SDPG R A P   L   +V   A      +        + GLP  
Sbjct: 3   IMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLPYT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M G+EGP+    R     + D    +P+ F DERL++  A++ L +  ++ K    K+D 
Sbjct: 63  MAGAEGPQAARIRKAAKTISD-ACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKIDM 121

Query: 139 IAAALILQEVLD 150
           IAA+L LQ  LD
Sbjct: 122 IAASLFLQAWLD 133


>gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
           E1]
 gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
           E1]
          Length = 141

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPL 77
           I ++DLGT RIG+A++DP   FA               L EL++   T+ +   ++GLP 
Sbjct: 4   IIALDLGTVRIGVAVTDPLGTFAQGVECWDAASGWMGKLGELMAQYGTDRL---LLGLPR 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G+EG      R     +  R   V   FWDER T+  AQ  +I+ ++SR+KR  KVD
Sbjct: 61  KEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGKVD 120

Query: 138 SIAAALILQEVLD 150
            IAA+LILQ  +D
Sbjct: 121 QIAASLILQNFID 133


>gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
           35311]
 gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
           35311]
          Length = 140

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+A+SD  G          + ++  Q   + L  +  E  I  F+IGLP N
Sbjct: 2   GLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN S GPR  ++ AF   +      +P V+ DERLTTV A+++LI+  + SR KR + +D
Sbjct: 62  MNNSIGPRAEASLAFGEKL-QELFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVID 120

Query: 138 SIAAALILQEVLD 150
            +AA +ILQ  LD
Sbjct: 121 KLAAVMILQNYLD 133


>gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
 gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
          Length = 139

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGL 75
           I  IDLG  R G+A+ D     A P   +    R+++ +  ++L +    E IA   +GL
Sbjct: 3   ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIA---LGL 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+GSEG    + R F   ++  K  +P  F DER TTV+A   L   +V  KKR   
Sbjct: 60  PKNMDGSEGESAQNAREF-GALLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAV 118

Query: 136 VDSIAAALILQEVLD 150
           VDS+AA +ILQ  LD
Sbjct: 119 VDSVAAVIILQNYLD 133


>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
           Hartford]
 gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
 gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
           Hartford]
          Length = 154

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFII 73
           N P+ +ID G+K++G+A+S+  R  A P   +  + KK+  T+L  LS +    +   +I
Sbjct: 16  NSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LSIVEKYKVCGVVI 73

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G+P++M+G+   + +    F      + + +P    DERLTT +A   L    + RK R 
Sbjct: 74  GMPIDMSGAVTEQTNMVMKFAEEFT-KSINLPIYLQDERLTTKAANNFLKSFGMKRKDRD 132

Query: 134 QKVDSIAAALILQEVLDRI 152
              D++AA++IL+ VLD +
Sbjct: 133 NNDDAVAASMILETVLDSM 151


>gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU121]
          Length = 142

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
             I  +D+G+K +G+AISD     A     L + +   +  + +L+  I    +   +IG
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ  LD IS
Sbjct: 124 VIDKMAAVFILQGYLDSIS 142


>gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC
           334]
 gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23]
 gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
 gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase
 gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase
 gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334]
 gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23]
 gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
 gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
 gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
          Length = 144

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
           +  +D+G++ +G+A+SDP    A     + + +   Q  +  L   +    + AF++GLP
Sbjct: 3   LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
            NMN S GPR   ++A+   ++     +P  F DERLTTV A ++LI + + SRK++ Q 
Sbjct: 63  KNMNNSIGPRAEKSQAY-GELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAQMILQNYLD 136


>gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis
           str. McKiel]
 gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase
 gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis
           str. McKiel]
          Length = 154

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +++  + L PN  + +ID G+K++G+A+S+  R  A P   +     T     +LS I  
Sbjct: 6   LQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVLSIIAK 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   +IGLP++M+G    + +    F   +  +   +P    DERLTT +A   L   
Sbjct: 66  YKICGVVIGLPIDMSGVVTQQTNIVMKFAEELA-KYTNLPIYLQDERLTTKAANNFLKSF 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
            V RK R    D++AA++IL+ VLD I
Sbjct: 125 GVKRKDRNNNDDAVAASMILETVLDSI 151


>gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase
 gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5]
          Length = 137

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +DLG  RIGLA++D   R A P   +VR +  +  L  ++    E  +   ++GLPLNM
Sbjct: 5   GLDLGRARIGLALADDVLRTARPLS-VVRHRTREADLASIAATLREWEVGTAVVGLPLNM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GSEG      RAF   +  R   VP   +DERL+T  A+  L +   S ++   +VD+ 
Sbjct: 64  DGSEGASARYARAFAEELA-RATGVPVELFDERLSTFEAESRLREQGFSARELRGRVDAE 122

Query: 140 AAALILQEVLD 150
           AAA+ILQ  LD
Sbjct: 123 AAAVILQGWLD 133


>gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
          Length = 143

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+GTK +G+++SD     A P     +  +  +   E L  +  E      ++GLP
Sbjct: 5   ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG EG R  ++R +   + + +  +   + DERLTT  A+++LID  V RK+R + +
Sbjct: 65  KHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DKLAAVLILQNYLD 137


>gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
           DSM 20284]
 gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
           DSM 20284]
          Length = 146

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           +  +D+G++ +G+A+SD     A     + + +   +  +  +   ++   +A F+IGLP
Sbjct: 3   LMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN +EGPRV + R +   ++     +P  F DERLTTV A+++LI+  + SR KR + 
Sbjct: 63  KNMNNTEGPRVEAARNY-GKLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA+LIL+  L+
Sbjct: 122 IDKLAASLILENYLN 136


>gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 142

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G++ +G+AISD     A     L + ++  +  ++ L+S I   N+ + +IG
Sbjct: 4   HKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD I
Sbjct: 124 VIDKMAAVFILQGYLDSI 141


>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
           49176]
 gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
           49176]
          Length = 140

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +DLG+K  G+A++D     A     + RK   K+ QT   +        +   ++G 
Sbjct: 3   IMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVLGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+GS   R   +  F   +  R   +  + WDERLTTVSA +I+I+  + R++R + 
Sbjct: 63  PKNMDGSVSKRCELSEEFAKKLTGR-TGIEVILWDERLTTVSAHEIMIEAGLKREEREKI 121

Query: 136 VDSIAAALILQEVLD 150
           VD +AA  IL++ ++
Sbjct: 122 VDKVAAVFILEDYMN 136


>gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
 gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
 gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 144

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I  +D G+K IG+AISDP    A     + R+   K+ ++   +        ++  ++G 
Sbjct: 3   IMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVLGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + G R   +       ++R++ +P V WDERLTTV A + L++  V R+ R + 
Sbjct: 63  PKNMNNTIGERAEKSLQL-KEALERRLGLPVVMWDERLTTVEANRTLMETGVRRENRGKY 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAA  ILQ  LD
Sbjct: 122 VDMIAAVFILQGYLD 136


>gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
           20093]
 gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
           20093]
          Length = 156

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  RIG A+SDP   FAHP   + VR        E+L+ I  E +   ++GLPL +
Sbjct: 5   GLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPLQL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY-----------VPFV-FWDERLTTVSAQQILIDMNV 127
           +G+EG      R +V  +I R V            +P V   DERLTTV A + L D  V
Sbjct: 65  DGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDAQV 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
             +     VD  +A  ILQ  LD+
Sbjct: 125 QGRNHRAMVDQQSAVEILQSALDQ 148


>gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
           15897]
          Length = 140

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           + I  +DLG++  G+AISD     AH             + A  + + +   NI   ++G
Sbjct: 2   EKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MNG  G R   +  F   + ++ + V  +  DERLTTV A   LI  +VSRKKR Q
Sbjct: 62  LPKHMNGDLGERAQISIDFKERL-EKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRKQ 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD +AA  ILQ  LD+I
Sbjct: 121 VVDKMAAVEILQGYLDKI 138


>gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 142

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
             I  +D+G++ +G+AISD     A     L + ++  +  ++ L+S I   N+ + +IG
Sbjct: 4   HKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD I
Sbjct: 124 VIDKMAAVFILQGYLDSI 141


>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
 gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
          Length = 143

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+GTK +G+++SD     A P     +  +  +   E L  +  E      ++GLP
Sbjct: 5   ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG EG R  ++R +   + + +  +   + DERLTT  A+++LID  V RK R + +
Sbjct: 65  KHMNGDEGVRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DKLAAVLILQNYLD 137


>gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
 gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
          Length = 137

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
           +  +DLG++ +G+++SD     A P   +   ++   +A  ++ ++I    I   ++GLP
Sbjct: 3   VLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG  G R   +  F   +    + V  V WDERLTTV+AQ+ILI  +VSRKKR + +
Sbjct: 63  KHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKKVI 120

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 121 DQMAAVQILQGYLD 134


>gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase
 gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 145

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 13/141 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77
           I  +D+G KRIG+A+SDP    A P  F++  +KV +   +L   I    I+  +IGLPL
Sbjct: 4   ILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVFEKINDL---IKNYKISKIVIGLPL 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRI 133
            + G EG +   T+ FV N+   K ++P     +F DER T+  A++ L  +   +K + 
Sbjct: 61  TLKGEEGEQARYTKEFVENL---KNHIPQDIEIIFVDERFTSSLAEKTL--LQTKKKNKK 115

Query: 134 QKVDSIAAALILQEVLDRISF 154
           +K+DS++A  ILQ  LDR+SF
Sbjct: 116 EKIDSLSAVFILQTYLDRLSF 136


>gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 140

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
           I  +DLG++ +G+++SD     A P       +    +AL ++  +I    +   ++GLP
Sbjct: 3   ILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG  G R   +  F   +    + V  + WDERLTTV+A++ILI  +VSRKKR + +
Sbjct: 63  KHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKKVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA  ILQ  LDR
Sbjct: 121 DQMAAVQILQGYLDR 135


>gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
 gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 143

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+GTK +G+++SD     A P     +  +  +   + L+ +  E      ++GLP
Sbjct: 5   ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG EG R  ++R +   + + K  +   + DERLTT  A+++LID  V RK R + +
Sbjct: 65  KHMNGDEGIRAEASRDYGTKLAN-KFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DKLAAVLILQNYLD 137


>gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
           15176]
 gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
           15176]
          Length = 156

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
           ++D G  R GLA  D       P  P +  K + + A  +            + GLP NM
Sbjct: 5   AVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGLPKNM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+EG R   +R F   + +     P V WDER TTVSA  IL D +   +KR  ++DS+
Sbjct: 65  DGTEGSRAAKSRRFAQRLAN-TAGRPVVLWDERRTTVSATAILADNDTFGQKRKARLDSV 123

Query: 140 AAALILQEVLD 150
           +AA+IL+  L+
Sbjct: 124 SAAVILESFLN 134


>gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
 gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
          Length = 142

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
             I  +D+G+K +G+AISD     A     L R    Q  L   +L+  I    +   +I
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQEDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRI 152
           + +D +AA  ILQ  LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141


>gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           longum JDM301]
 gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 156

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP   FAHP   + V         E+L+ I  E++   I+GLPL M
Sbjct: 9   GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 68

Query: 80  NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127
           +G+EG      R +  N+  R           +  +P V   DERLTTVSA + L + + 
Sbjct: 69  DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 128

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
           +  K    VD  +A +ILQ  LDR
Sbjct: 129 ASNKHRPVVDQQSAVVILQTALDR 152


>gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
          Length = 143

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+GTK +G+++SD     A P     +  +  +   E L  +  E      ++GLP
Sbjct: 5   ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG EG R  ++R +   + + +  +   + DERLTT  A+++LID  V RK R + +
Sbjct: 65  KHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DKLAAVLILQNYLD 137


>gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase
 gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 151

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP   FAHP   + V         E+L+ I  E++   I+GLPL M
Sbjct: 5   GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127
           +G+EG      R +  N+  R           +  +P V   DERLTTVSA + L + + 
Sbjct: 65  DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
           +  K    VD  +A +ILQ  LDR
Sbjct: 125 ASNKHRPVVDQQSAVVILQTALDR 148


>gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum
           DJO10A]
 gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
           12_1_47BFAA]
 gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase
 gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase
 gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum
           DJO10A]
 gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 152

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP   FAHP   + V         E+L+ I  E++   I+GLPL M
Sbjct: 5   GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127
           +G+EG      R +  N+  R           +  +P V   DERLTTVSA + L + + 
Sbjct: 65  DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
           +  K    VD  +A +ILQ  LDR
Sbjct: 125 ASNKHRPVVDQQSAVVILQTALDR 148


>gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 140

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G++ +G+A+SDP    A     + + +       + L  +  E  +  F++GLP N
Sbjct: 2   GLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN + GPR  ++ A+    I+ +  +P  + DERLTTV A+++L++  N SR KR + +D
Sbjct: 62  MNNTIGPRAEASLAY-GKAIEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVID 120

Query: 138 SIAAALILQEVLD 150
            +AA +ILQ  LD
Sbjct: 121 KLAAVMILQNYLD 133


>gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228]
 gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A]
 gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135]
 gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase
 gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase
 gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus
           epidermidis RP62A]
 gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135]
 gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU045]
 gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU028]
          Length = 142

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
             I  +D+G+K +G+AISD     A     L R    Q  L   +L+  I    +   +I
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRI 152
           + +D +AA  ILQ  LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141


>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
 gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO]
 gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
 gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a04]
 gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133C]
 gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0082]
 gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133A]
 gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133B]
 gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a01]
 gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
 gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
 gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a01]
 gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133B]
 gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133A]
 gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133C]
 gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a04]
 gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0082]
          Length = 143

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+AISDP   F      +   ++ +   E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAISDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN S GPR  ++ ++    I     +P  + DERLTTV A+++L++  N SR KR
Sbjct: 60  GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA +ILQ  LD
Sbjct: 119 KKVIDKLAAVMILQNYLD 136


>gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3]
 gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase
 gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3]
          Length = 202

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+G+ R+G+A SDPG   A P   L R +     ++ L  I  E  A   ++GLP  M
Sbjct: 28  GVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVVVGLPRQM 87

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG  V   R +   + +R   VP  F DERLTTV+A + + +  V  + R   VD  
Sbjct: 88  SGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQE 147

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 148 AAVQILQHDLD 158


>gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
 gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase
 gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
          Length = 150

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D G KRIG+A+ D     A     ++RK        + S + T ++   +IG PL 
Sbjct: 3   ILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G+EG +      F   + +  + +P + WDE LTT  A++IL    V  +KR   VD 
Sbjct: 63  LDGTEGIQCEKVVRFARRL-EAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVDR 121

Query: 139 IAAALILQEVLDRIS 153
           +AA+LILQ  LD IS
Sbjct: 122 LAASLILQSYLDAIS 136


>gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
           20213]
 gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
           20213]
          Length = 150

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 11/142 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP   FAHP   + V         E+L+ +  E++   I+GLPL M
Sbjct: 5   GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDR---------KVYVP-FVFWDERLTTVSAQQILIDMNVSR 129
           +G+EG      R +  N+  R         +  +P  V  DERLTTVSA + L +   + 
Sbjct: 65  DGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKAS 124

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
            K    VD  +A +ILQ  LDR
Sbjct: 125 TKHRPMVDQQSAVVILQTALDR 146


>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
 gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
          Length = 140

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G K IG A+SD     A     + R         +            I+GLP N
Sbjct: 3   ILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ GP+    +AF   + +    +    WDERL+TV+A++ LI  +V R KR Q +D 
Sbjct: 63  MNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVIDK 122

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LD +S
Sbjct: 123 MAAVFILQGYLDSLS 137


>gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Desmospora sp. 8437]
          Length = 141

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 8/142 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLG KR+G+A+SDP    A     L R+        L   I    + A ++GLP N
Sbjct: 4   IMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGLPRN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS G +  + R     + +R   +P   WDERL+TV+ ++ LID ++SR+KR + VD 
Sbjct: 63  MDGSIGAKGEACRQLGRELEER-FQIPVELWDERLSTVAVERTLIDADLSRRKRRKVVDR 121

Query: 139 IAAALILQEVLDRISFLESSKG 160
           +AA+ ILQ       +LE+ +G
Sbjct: 122 MAASWILQ------GYLEARRG 137


>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
           315-B]
 gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
           315-B]
 gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 147

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 7/142 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G K IG+AISD     A P   + R    +   ++   I   ++   ++GLP N
Sbjct: 4   VLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP     + F   + + K  +  V+ DER+TT+ A+ +L++ +V R+ R + VD 
Sbjct: 64  MNNTLGPTCQMVQKFSEKLKN-KFRLELVYVDERMTTLMAKDVLMEASVRRENRKKYVDK 122

Query: 139 IAAALILQEVLDRISFLESSKG 160
           IAAA IL+      ++++SS G
Sbjct: 123 IAAAFILK------TYMDSSDG 138


>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
 gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
          Length = 144

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +DLG+KRIG+A+SD     A     + R    +    +L  +    +   +IGLP +
Sbjct: 3   ILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPRH 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G  G       A+   + +  +++P   WDERLTT+ A+++L+  ++SR+KR Q +D 
Sbjct: 63  LDGRLGEGAEEALAWAAELRE-HLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVIDK 121

Query: 139 IAAALILQEVLD 150
           +AA LILQ  LD
Sbjct: 122 LAAGLILQAFLD 133


>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
 gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
          Length = 143

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+A+SDP   F      +   ++ +   E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN S GPR  ++ ++    I     +P  + DERLTTV A+++L++  N SR KR
Sbjct: 60  GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA +ILQ  LD
Sbjct: 119 KKVIDKLAAVMILQNYLD 136


>gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
 gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
          Length = 139

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G K IG+A SD     AHP   + R+        + + ++       ++GLPL ++
Sbjct: 6   GLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGLPLELS 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           G EG R    R  +  +   +  +P       WDER +T + +++LI+ ++SR+KR Q +
Sbjct: 66  GQEGRRARRVRVLIDAL---RAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQVI 122

Query: 137 DSIAAALILQEVLD 150
           D  AAA ILQ  LD
Sbjct: 123 DKQAAAYILQGWLD 136


>gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
 gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
          Length = 140

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 10/137 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+A+SDP   F      +   K+ +   E     +   I    +   +IGL
Sbjct: 5   GLDVGSKTVGVAVSDP---FGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
           P NMN S GPR  ++  +   ++     +P +  DERLTTV A+++LI+  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASLRYAE-LVKETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA +ILQ  L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137


>gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 1/2a F6854]
          Length = 117

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP
Sbjct: 3   IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
            NMN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 63  KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117


>gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 157

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            IDLG  R+GLA+SDPG   AHP   +     +  AL E++  I  E++   ++GLPL +
Sbjct: 5   GIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPLLL 64

Query: 80  NGSEGPRVHSTRAFVHNM-------IDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127
           +G EG      R +  N+       +D + Y    VP +   DERLTTV+A   L D  V
Sbjct: 65  SGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDAQV 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
             +K    VD  +A +ILQ  +DR
Sbjct: 125 GGRKHRPMVDQQSAVVILQTAIDR 148


>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 141

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G K IG++ISD     A     + R    +   E+   +   NI   ++G+P+NM+
Sbjct: 6   GLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPINMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS+       R F   +   K  V  +F DER T++ A++ LI  NV R+ R + +D +A
Sbjct: 66  GSDTVMSKRIRKFARKLTP-KFGVEVIFQDERFTSIEAERTLIQSNVRRENRKKYIDQLA 124

Query: 141 AALILQEVLDRIS 153
           A++ILQ  +DR++
Sbjct: 125 ASIILQTYIDRMN 137


>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 137

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           I  +DLG+K +G+++SD     A P             A E +  +I    +   ++GLP
Sbjct: 3   ILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG  G R   +  F   +    + +  V WDERLTTV+A++ILI  +VSRKKR + +
Sbjct: 63  KHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKKII 120

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 121 DQMAAVQILQSYLD 134


>gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
 gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
 gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
          Length = 143

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+GTK +G+++SD     A P     +  +  +   + L+ +  E      ++GLP
Sbjct: 5   ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG EG R  ++R +   + + +  +   + DERLTT  A+++LID  V RK R + +
Sbjct: 65  KHMNGDEGIRAEASRDYGTKLAN-EFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DKLAAVLILQNYLD 137


>gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
 gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
          Length = 161

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLP 76
           +D+GT R+G+A+SDP    A P   L R     +       E+++          I+GLP
Sbjct: 1   MDVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +++G EGP   + R +   +  R   V     DERLT+VSA + L D  V+ +++   V
Sbjct: 61  RSLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVV 120

Query: 137 DSIAAALILQEVLD 150
           D  AA LILQ  LD
Sbjct: 121 DQAAAVLILQAALD 134


>gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus
           ATCC 25745]
 gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase
 gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745]
          Length = 146

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           +  +D+G++ +G+++SD     A     + + +      +E +  +  E ++  F++GLP
Sbjct: 3   LMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN +EGPRV + R +   +++    +P  F DERLTTV A+++LI+  + SR KR + 
Sbjct: 63  KNMNNTEGPRVEAARNY-GKLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA+LIL+  L+
Sbjct: 122 IDKLAASLILENYLN 136


>gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
           DSM 5476]
 gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
           DSM 5476]
          Length = 145

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R GLA+ D     A P   +  +       +        ++   ++G P N
Sbjct: 3   IMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS G R      F   + +  + +P   WDER TTVSA Q L ++NV  +KR + VD 
Sbjct: 63  MDGSCGERAKKCEEFAKRLGEM-IPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVDE 121

Query: 139 IAAALILQEVLD 150
           +AA +IL+  L+
Sbjct: 122 VAATIILESYLE 133


>gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
 gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
          Length = 137

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 4/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLP 76
           I  +DLG+K +G+++SD     A P   +            ++  +I    +   ++GLP
Sbjct: 3   ILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +MNG  G R   +  F   +    + +  V WDERLTTV+A++ILI  +VSRKKR + +
Sbjct: 63  KHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKKII 120

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 121 DQMAAVQILQSYLD 134


>gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
 gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
          Length = 133

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           +  ID GTK +GLA+ D   + A P +P   R KV +   EL   +   ++   ++GLPL
Sbjct: 3   VLCIDWGTKSLGLALGDTNLKLATPLKPIPNRGKVLERIAEL---VKEYDVRLVVVGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
             +G EG R    R+FV  +      +V    WDER TT  A Q+L     SRKK  +  
Sbjct: 60  TPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKELK 117

Query: 137 DSIAAALILQEVLDRI 152
           DS++A +ILQE LD +
Sbjct: 118 DSVSALIILQEYLDSL 133


>gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL J2-003]
          Length = 114

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           MN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 62  MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114


>gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           LO28]
          Length = 116

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISDP G          + +   Q   + +  +  E  +   ++GLP N
Sbjct: 2   GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           MN + GPR  S++ +   +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 62  MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114


>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
 gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
          Length = 157

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 14  KPNQP------IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           +P QP      I  +D+G +RIG+AISD     A P   L R    +    +        
Sbjct: 3   QPPQPVMNLARIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHE 62

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
             A + GLPL+M+G   P+   ++AF   +  R   +P  FWDERLT+ +A +IL     
Sbjct: 63  ATAIVAGLPLHMSGDLSPQAQKSQAFAQELAKR-TGLPLYFWDERLTSHAAHEILDVSGF 121

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
               R   +D +AA LILQ  LD
Sbjct: 122 GTTGRKAVIDQVAAVLILQGFLD 144


>gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
 gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
          Length = 166

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +DLG  RIGLA+SDP   FAHP   +        A++ ++  I    ++  ++G PLN+
Sbjct: 9   GLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHIVLGYPLNL 68

Query: 80  NGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           +G+EG      R F   +  R     +       DER+TTVSA  +L+   +S ++    
Sbjct: 69  DGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGMSSRQHRAV 128

Query: 136 VDSIAAALILQEVLD 150
           VD+ +A +ILQ  LD
Sbjct: 129 VDTQSAVVILQSALD 143


>gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1]
 gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1]
          Length = 143

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+A+SDP   F      +   ++ +   E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN S GPR  ++  +    I     +P  + DERLTTV A+++L++  N SR KR
Sbjct: 60  GLPKNMNNSIGPRAEASMLYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA +ILQ  LD
Sbjct: 119 KKVIDKLAAVMILQNYLD 136


>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
 gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
          Length = 136

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77
           I  ID GTK+IG+AISD     A P   +         L+ +  I  +N I   ++G+P+
Sbjct: 3   ILGIDYGTKKIGIAISDETNTIALPHGVI---DTDGEYLDKIKEIVKKNKITRIVVGMPI 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV- 136
            + G +G R   T  F++ +  +   +  V WDERL+T  +++IL   NV  +K  +KV 
Sbjct: 60  TLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKVI 119

Query: 137 DSIAAALILQEVLD 150
           D IAA  ILQ  LD
Sbjct: 120 DKIAATFILQGYLD 133


>gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           D12]
 gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D12]
 gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D12]
          Length = 139

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SDP    A P   + R+K  +    ++     EN  + ++G+P +++
Sbjct: 7   ALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIPKSLD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
           GSE  +    R F+H +      V  +  DER TTV+A +IL +MN  RK  ++K   VD
Sbjct: 66  GSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMN--RKGALEKRKVVD 123

Query: 138 SIAAALILQEVLD 150
            +AA+LILQ+ L+
Sbjct: 124 KVAASLILQQYLN 136


>gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae
           HRC/581]
 gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae]
          Length = 141

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLP 76
           I ++DLGTK  G AI+DP    A        K   + Q  L++        I   ++G P
Sbjct: 7   ILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGKIVLGYP 66

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L MNG++ P        + +++ +   +P V  DERL+T  A  ILI  NVSRKKR + +
Sbjct: 67  LYMNGNKAPHTLLVEK-MSSILKQNFQIPVVLQDERLSTSQAHDILILANVSRKKRKKVI 125

Query: 137 DSIAAALILQEVL 149
           D +AA +IL+  L
Sbjct: 126 DKLAAQIILERYL 138


>gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
 gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
          Length = 140

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  R+G+A+SDP  R A P   L  ++V   A    S +        + G PL 
Sbjct: 3   VLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKPLT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G EGP+          + DR   +P    DERL++  A++IL    +S K    KVD 
Sbjct: 63  LSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKVDM 121

Query: 139 IAAALILQEVLDR 151
           +AA+L LQ  LDR
Sbjct: 122 VAASLFLQAWLDR 134


>gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
           L2-32]
 gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase
 gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
           L2-32]
          Length = 151

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            IDLG  R+GLA+SDP    AHP   +     +  AL E++  I  E++   +IGLPL +
Sbjct: 5   GIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPLLL 64

Query: 80  NGSEGPRVHSTRAF-------VHNMIDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127
           NG EG      R +       +H  ++ + Y    VP +   DERLTTV+A   L D  +
Sbjct: 65  NGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDARI 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
             +K    VD  +A +ILQ  LDR
Sbjct: 125 GGRKHRPMVDQQSAVVILQTALDR 148


>gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
 gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
          Length = 145

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77
           + ++D GT+R+GLA++DP R  A P          + AL++L  +   E I   +IG PL
Sbjct: 5   VVAVDYGTRRVGLALADPLRVIAQP----YGTYAPEAALQVLQRLHAEEGIETLVIGWPL 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
              G+EG        F+  +      V  V WDER T+  A++ L ++   RKKR  K  
Sbjct: 61  TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQE L++
Sbjct: 121 IDQMAAVIILQEYLEQ 136


>gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase
 gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 137

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG  RIGLA++D   R A     +VR+   +    +        +   ++GLPLNM+
Sbjct: 5   GVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPLNMD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+EGP     R F   + +  + VP   +DERL++  A+  L    VS + +  +VD+ A
Sbjct: 65  GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQVDAEA 123

Query: 141 AALILQEVLDR 151
           AA+ILQ  LDR
Sbjct: 124 AAVILQGWLDR 134


>gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
           15952]
 gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
           15952]
          Length = 145

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           I  +D+G++ +G+A+SDP    A     + + +       + +  +  +  I  F++GLP
Sbjct: 3   IMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN + GPR  ++ ++   + ++   +P  + DERLTTV A+++LI+  N SR KR + 
Sbjct: 63  KNMNNTIGPRAEASMSYGEKL-EQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAVMILQNFLD 136


>gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
 gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
          Length = 165

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            ID+G  R+G+A SDP   FA+P   L R       +E ++ +T E ++   ++GLP  +
Sbjct: 10  GIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIVVGLPRLL 69

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG      RA+   +  R   VP    DERLTTV A Q L D  V  + +   VD  
Sbjct: 70  SGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQRSVVDQA 129

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA LILQ  LD     E+S G
Sbjct: 130 AAVLILQSALD----AEASAG 146


>gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 145

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 9/140 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAF 71
           + I  +D+G+K +G+A+SD     A     +   ++ + A +     LL  +    +   
Sbjct: 5   ERIVGLDVGSKTVGVAMSDLLGWIAQGLETI---RIDEEAGDFGFDRLLELLDQHQVKKV 61

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
           +IGLP NMN + GPR  +++ +   ++D +  +   + DERLTT  A+++L+ + NVSR 
Sbjct: 62  VIGLPKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRS 121

Query: 131 KRIQKVDSIAAALILQEVLD 150
           KR + +D +AA +ILQ  LD
Sbjct: 122 KRKKVIDKLAAVIILQNYLD 141


>gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 138

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G KRIG+A+SDP R F+ P   L  K   Q   EL   IT   +   IIG+P  
Sbjct: 7   ILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLIIGIPYA 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++GS  P+    +  ++ + D  + +    +DER +T  A + L  M  + ++  +  D+
Sbjct: 67  IDGSITPKTEECQQILNRLKDV-LSISVEGFDERYSTWEANEELKKMGYNWRQAKEIKDA 125

Query: 139 IAAALILQEVLDR 151
           ++AA+IL+E L++
Sbjct: 126 MSAAMILKEFLNQ 138


>gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 143

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTE-NIAAFIIG 74
           + I  +D+G K +G+A+SD        + +   KK  + A L     + T+ NI   + G
Sbjct: 3   EKILGLDIGDKYVGIAVSDA--LGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +M+G E  +V  T+ +  N + +++ +  ++ DERLTT +++ +LI   V R+ R Q
Sbjct: 61  LPKDMDGRETAQVRKTKNYC-NFLAKRLGLEVIYIDERLTTRASEAVLIAGGVRRENRKQ 119

Query: 135 KVDSIAAALILQEVLDR 151
            +D+++A LILQ  LDR
Sbjct: 120 HIDTLSAQLILQMYLDR 136


>gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
 gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
          Length = 146

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIGL 75
           I  +D G K +G+A+SD     A     + R++ T+   T   +        I+  ++GL
Sbjct: 3   ILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQ 134
           PL M+   G R      F   M+ ++  +  + WDERLTTV+A ++L +M V  R  R  
Sbjct: 63  PLLMSDEIGDRAQKAMEF-GEMLKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNRKA 121

Query: 135 KVDSIAAALILQEVLD 150
            +D IAA  ILQE LD
Sbjct: 122 VIDQIAAGFILQEYLD 137


>gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase
 gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 137

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG  RIGLA++D   R A     +VR+   +    +        +   ++GLPLNM+
Sbjct: 5   GVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLNMD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+EGP     R F   + +  + VP   +DERL++  A+  L    +S +++  +VD+ A
Sbjct: 65  GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEA 123

Query: 141 AALILQEVLDR 151
           AA+ILQ  LDR
Sbjct: 124 AAVILQGWLDR 134


>gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1]
 gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 142

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 12/140 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           ++D+GTKRIG+A SDP     +P P++      + A E +  +  E +I   +IGLPL +
Sbjct: 8   ALDVGTKRIGVAYSDPLGISTNPLPYIDN---DEHAFEKIRDVVREYDIGTVVIGLPLTL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            G EG +   T+ F   +   K Y+P      F DER TT  A++ L +     KKR +K
Sbjct: 65  KGKEGTQAKLTKEFAQKL---KGYLPEDVEIEFVDERFTTSLAEKQLKETGKRSKKR-EK 120

Query: 136 VDSIAAALILQEVLDRISFL 155
           +DS++A  IL+  L++  ++
Sbjct: 121 IDSLSAVYILKTYLEKKQYM 140


>gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
 gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
          Length = 139

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
           + I  +DLG++  G+A+SD     AH             Q A  ++  I    I   ++G
Sbjct: 2   EKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           LP +MNG  G R   +  F   M+++KV  +  V  DERLTT  AQ  LI  +VSRKKR 
Sbjct: 62  LPKHMNGDLGERAQISIMF-KEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA  ILQ  LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137


>gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232]
 gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase
 gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase
 gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase
 gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232]
 gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 143

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
           I ++DLG K  G AISD   + ++P   F   +    + +  ++F   E  I+  ++G P
Sbjct: 7   ILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYP 66

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L + G   PR      F  +++ +   +  VF DERLTT  AQ  L+D+ +S KKR + +
Sbjct: 67  LTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVI 125

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           D +AA +IL+       FL + KG
Sbjct: 126 DKLAAQIILER------FLNTKKG 143


>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
 gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
          Length = 183

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 81/136 (59%), Gaps = 5/136 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTEN-IAAFIIG 74
           I ++D G KR+GLAISDPGR  A P   L R        T ++ L  +  E+ +   ++G
Sbjct: 4   ILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRLVMG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G + P+  + R +  + + +++ +  ++ DER +T  A +++ +  +S  KR +
Sbjct: 64  LPVHTSGRDSPQARAARQW-GDRVAKELGLTIIYVDERYSTKHADELMREAGLSAAKRKR 122

Query: 135 KVDSIAAALILQEVLD 150
           +VDS+AA +IL++ LD
Sbjct: 123 RVDSLAAVVILRDYLD 138


>gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii 115-3-CHN]
 gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
 gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
           JV-V16]
 gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii 115-3-CHN]
 gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
 gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
           JV-V16]
          Length = 148

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISD  G          + +      ++ +  I  E ++  F++GLP N
Sbjct: 5   GLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
           M+GS+G  V+ ++ +    ++ K  +P  + DERLTT+ A ++LI+      RKKR + +
Sbjct: 65  MDGSDGASVNRSKNY-GKRLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRKEVI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
 gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
 gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
 gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
 gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus
           04-02981]
          Length = 123

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 59/95 (62%)

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
           +L+  I   N+   +IGLP NMN S G R  ++  +   +++    +  V WDERL+T++
Sbjct: 28  QLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMA 87

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           A++ L++ +VSR+KR Q +D +AA  ILQ  LD +
Sbjct: 88  AERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSL 122


>gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 163

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP----RPFLVRKKVTQTALELLSFITTEN--IAAFIIG 74
            +DLG  R+G+A S+P R FA+P    R +    +V    L+L+     E   + A  IG
Sbjct: 7   GLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTAIAIG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHN--------MIDRKVYV----PFVFWDERLTTVSAQQIL 122
           LPL M+GS G      + +  +        M D+  ++      +F DERLTTV A + L
Sbjct: 67  LPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDAHRRL 126

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            D NVS K+    VD  +A  ILQ  LDR
Sbjct: 127 FDANVSSKQHRAVVDQQSAVEILQTALDR 155


>gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC
           14672]
 gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 154

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DPG   A P   +  + V      L   I        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVGLPRSLK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +    + VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 68  GGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 128 AVIILQQALESERVSGEPPGEG 149


>gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
           1501(2011)]
          Length = 179

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%)

Query: 10  VKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTEN 67
            K+  P Q +   +D G K++G+A+ +   + A P   LV         + LL  I T  
Sbjct: 20  TKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWK 79

Query: 68  IAAFIIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
           I   ++GLPLNM+GS      R H   R   H +++++++VP   +DERLT+V A+++  
Sbjct: 80  IGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAW 139

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149
           ++ + + +R   +D I+A L+LQ  L
Sbjct: 140 ELGLIKNER-DPIDDISACLLLQSYL 164


>gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
 gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
          Length = 153

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
            +D+G  R+G+A SDP    A P   L R        V     EL++ I        ++G
Sbjct: 11  GVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+N+ G  GP   + +A+   + D    VP    DER++TV A + L +  V  K+R  
Sbjct: 71  LPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRRA 130

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 131 VVDQAAAVEILQSWLD 146


>gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
 gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
          Length = 170

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+GT R+G+A+SDP    A P   L R   +   ++ ++ +  +  A   ++GLPLNM
Sbjct: 8   GVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLNM 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G +     + RA+ + +   +  +  +  DERLT+VSA Q L    V+ ++  Q VD  
Sbjct: 68  KGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQQ 127

Query: 140 AAALILQEVLD 150
           AA LILQ  L+
Sbjct: 128 AAVLILQAALE 138


>gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens
           F0305]
 gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Parascardovia denticolens DSM 10105]
 gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens
           F0305]
 gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Parascardovia denticolens DSM 10105]
          Length = 176

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+G+AISDP   FAHP   + V     Q   E+   I    ++  +IG PL +
Sbjct: 35  GLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHVVIGYPLQL 94

Query: 80  NGSEGPRVHSTRAFVHNMIDR-KVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +G+EG      R F   +  R  +Y    V     DER+TTV A   L+D  +  ++   
Sbjct: 95  DGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAGIGSRRHRP 154

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A LILQ  LD
Sbjct: 155 LVDQQSAVLILQAALD 170


>gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K]
 gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase
 gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K]
          Length = 137

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG  RIGLA++D   R A     +VR+   +    +        +   ++GLPLNM+
Sbjct: 5   GVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPLNMD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+EGP     R F   + +  + VP   +DERL++  A+  L    +S +++  +VD+ A
Sbjct: 65  GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEA 123

Query: 141 AALILQEVLDR 151
           AA+ILQ  LDR
Sbjct: 124 AAVILQGWLDR 134


>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
 gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
 gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 139

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKK-VTQTALELLSFITTENIAAFIIG 74
           + I  +DLG++  G+AISD     AH    +  R     + A  +++ I    I   ++G
Sbjct: 2   ERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           LP +MNG  G R   +  F   M++++V  +  V  DERLTT  AQ  LI  +VSRKKR 
Sbjct: 62  LPKHMNGDLGERAQISIMF-KEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA  ILQ  LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137


>gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase
 gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 142

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
             I  +D+G+K +G+A+SD     A     L + ++  +  + +L   I  E+    +IG
Sbjct: 4   HKIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   ++     +  V WDERL+T++A++ L++ +VSR KR +
Sbjct: 64  LPKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKK 123

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA  ILQ  LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141


>gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17]
 gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17]
          Length = 156

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP   FAHP   +     +  AL+ +++ I  E +   ++GLPL +
Sbjct: 9   GVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQL 68

Query: 80  NGSEGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNV 127
           +G+EG      R +       + N++D       ++P V   DERLTTVSA + L++  +
Sbjct: 69  DGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQL 128

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
             ++    VD  +A +ILQ  LD
Sbjct: 129 GSRRHRPVVDQQSAVVILQTALD 151


>gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705]
 gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705]
 gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 145

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           +G  R+GLA+SDP   FAHP   + V         E+L+ I  E++   I+GLPL M+G+
Sbjct: 1   MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT 60

Query: 83  EGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNVSRK 130
           EG      R +  N+  R           +  +P V   DERLTTVSA + L + + +  
Sbjct: 61  EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN 120

Query: 131 KRIQKVDSIAAALILQEVLDR 151
           K    VD  +A +ILQ  LDR
Sbjct: 121 KHRPVVDQQSAVVILQTALDR 141


>gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 144

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           +G  R+GLA+SDP   FAHP   + V         E+L+ I  E++   I+GLPL M+G+
Sbjct: 1   MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT 60

Query: 83  EGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNVSRK 130
           EG      R +  N+  R           +  +P V   DERLTTVSA + L + + +  
Sbjct: 61  EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN 120

Query: 131 KRIQKVDSIAAALILQEVLDR 151
           K    VD  +A +ILQ  LDR
Sbjct: 121 KHRPVVDQQSAVVILQTALDR 141


>gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum
           PRL2010]
 gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum
           PRL2010]
 gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 152

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP   FAHP   +     +  AL+ +++ I  E +   ++GLPL +
Sbjct: 5   GVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQL 64

Query: 80  NGSEGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNV 127
           +G+EG      R +       + N++D       ++P V   DERLTTVSA + L++  +
Sbjct: 65  DGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQL 124

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
             ++    VD  +A +ILQ  LD
Sbjct: 125 GSRRHRPVVDQQSAVVILQTALD 147


>gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia
           heliotrinireducens DSM 20476]
 gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia
           heliotrinireducens DSM 20476]
          Length = 138

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA+SD   R A P   L    V     E    +    I   + GLP  
Sbjct: 3   VLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLPYT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M G EGP+  S +     +   +  +P  F DERL++  A++IL +  +  +    KVD 
Sbjct: 63  MAGEEGPQAASIKEKARQIASAR-DLPLSFVDERLSSAEAKRILREEGLDERSMRGKVDM 121

Query: 139 IAAALILQEVLD 150
           IAA+L LQ  LD
Sbjct: 122 IAASLFLQAWLD 133


>gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
           12042]
 gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
           12042]
          Length = 139

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 17/142 (11%)

Query: 19  IASIDLGTKRIGLAISDP----GR-----RFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           I  +DLG++ +G+A+SDP     R     RFA         +  Q A EL          
Sbjct: 4   IMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKEL-------GAV 56

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            F++GLP +MNG  G R   +  F   + +    +P +  DERLTT +A++ILI  +VSR
Sbjct: 57  KFVLGLPKHMNGDVGIRGQISLDFKAKL-EAACGLPVILQDERLTTAAAERILISADVSR 115

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           KKR   +D +AA  ILQ  LD+
Sbjct: 116 KKRKAVIDQMAAVQILQSYLDQ 137


>gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
 gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
          Length = 141

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 8/137 (5%)

Query: 19  IASIDLGTKRIGLAISDP----GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           I  +DLG+K  G++I D      R     R             E+L  +    +   ++G
Sbjct: 4   IIGLDLGSKTCGVSICDALHITCRALTTVR--FESDDYDACLEEVLKLLQENKVKEVVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MNG  G R   +  F   +    + V    WDERLTTV+A++IL+  +VSRKKR +
Sbjct: 62  LPKHMNGDIGIRGEISCEFAKKLESSGIKVHL--WDERLTTVAAEKILLQGDVSRKKRKK 119

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA  ILQ  LDR
Sbjct: 120 VIDQMAAVQILQSFLDR 136


>gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei
           subsp. sakei 23K]
 gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase
 gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 147

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
           +   D+G++ +G+A+SD     A     + + +  ++  L+ +   +    +  F++GLP
Sbjct: 3   LMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN S GPR    + +   + +    +P  + DERLTTV A+++L++  + SRKKR Q 
Sbjct: 63  KNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRKQV 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 123 IDKLAAVMILQNYLD 137


>gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1]
          Length = 143

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D G  R G+A+       A P   +  K   +   +  +    +     ++G P N
Sbjct: 3   IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R      F   + +    +P   WDER TTVSA   L   N   KKR   VD+
Sbjct: 63  MNGTIGERCEKCTLFAEKL-EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121

Query: 139 IAAALILQEVLD 150
           +AA +IL+  L+
Sbjct: 122 VAAVIILESYLE 133


>gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27]
 gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8]
 gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase
 gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase
 gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27]
 gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 135

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA+ + G   A  R +LVRK + +    LL F+  E +   ++GLPL 
Sbjct: 3   VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +  E  +       V  +  R V V    WDER TT  AQ+ L       ++   K+D 
Sbjct: 63  TDLKESAQAGKVLPLVEALRARGVEVE--LWDERFTTKLAQERLKHAPKRLRRDKGKLDE 120

Query: 139 IAAALILQEVLDR 151
           +AA ++L++ L R
Sbjct: 121 LAAVVLLEDYLAR 133


>gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
 gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
          Length = 138

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G + IG+A SD     A     + R         +   +    ++  ++G P N
Sbjct: 3   ILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GPR   +  F  + +  ++ +P   WDERLTT+ A++ L+  ++SR KR + +D 
Sbjct: 63  MNNTVGPRAKLSEEFA-DKLSAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVIDK 121

Query: 139 IAAALILQEVL 149
           +AA LILQ  L
Sbjct: 122 MAAVLILQNYL 132


>gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
           15436]
 gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
           15436]
          Length = 155

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D G  RIG+A++DP  + + P   L          ELL+ I  +     +IG+P+++N
Sbjct: 9   GVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHLN 68

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R F + +      +     DERLTT  A   L +M V  + R  K+D +A
Sbjct: 69  GKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQLA 128

Query: 141 AALILQEVLD 150
           A++IL+  ++
Sbjct: 129 ASIILENAIE 138


>gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium
           varium ATCC 27725]
 gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium
           varium ATCC 27725]
          Length = 139

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G  RIG+A SD     A P   + RKK T+    +    T EN  A ++G+P +++
Sbjct: 7   SLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIPKSLD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
           G+E  +    R F+  +      +  +  DERLTTVSA ++L + N  +K  ++K   VD
Sbjct: 66  GTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESN--KKGALEKRKVVD 123

Query: 138 SIAAALILQEVLD 150
            IAAA+ILQ  LD
Sbjct: 124 KIAAAIILQTFLD 136


>gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
 gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase
 gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
          Length = 156

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTEN--IAAFIIGLPL 77
            ID G  RIG+A SDP    A P   + R K     +  +L+    E   +   ++GLP 
Sbjct: 8   GIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLPR 67

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +++G EGP     R F   +  R   VP    DER+TTVSA+ +L D   +  KR   VD
Sbjct: 68  SLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVVD 127

Query: 138 SIAAALILQEVLD 150
             AA LILQ  LD
Sbjct: 128 QAAAVLILQHALD 140


>gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
 gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
          Length = 140

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I  ID G  RIG+A+SDP G           +  + +    ++  +        I+G P 
Sbjct: 3   IIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGFPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR   T  F+  +  R   +  + WDERL+TVSA + + ++ V + K+   VD
Sbjct: 63  NMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHVVD 122

Query: 138 SIAAALILQEVLD 150
            IAA  ILQ  LD
Sbjct: 123 QIAAVYILQGYLD 135


>gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
 gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
          Length = 143

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G  RIG+A++DP    A P   L RK   + A  LL  I    +   ++G PL+
Sbjct: 6   IMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNPLH 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVD 137
           ++G   P       F   + +R   +P   WDERL++V+A +IL +   +R K R   +D
Sbjct: 66  LSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFIID 124

Query: 138 SIAAALILQ 146
            +AA LIL+
Sbjct: 125 QVAAVLILE 133


>gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
           20098]
 gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
           20098]
          Length = 154

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            IDLG  R+GLA+SDP   FAHP     V     +   +++  I  EN+   ++GLPL +
Sbjct: 5   GIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGLPLLL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDR-KVY----------VPFV-FWDERLTTVSAQQILIDMNV 127
           +G EG      R +  N+  R  +Y          VP +   DERLTTVSA + L   N+
Sbjct: 65  SGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLRQANI 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
           + +     VD  +A +ILQ  LD+
Sbjct: 125 AERGHRPVVDQQSAVVILQAALDK 148


>gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_5R]
 gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 139

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SD     A P   + R+K+ +    ++     EN  + ++G+P +++
Sbjct: 7   ALDVGDVRIGVAKSDIMGIIASPLETIDRRKM-KPVKRIIELCEQENTKSIVVGIPKSLD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
           GSE  +    R F+H +      V     DER TTV+A QIL +MN  RK  ++K   VD
Sbjct: 66  GSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMN--RKGALEKRKVVD 123

Query: 138 SIAAALILQEVLD 150
            +AA+LILQ+ L+
Sbjct: 124 KVAASLILQQYLN 136


>gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 134

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 8/130 (6%)

Query: 28  RIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------ENIAAFIIGLPLNMN 80
           RIGLA SD  +  A P   +   KK  QT ++LL  I+         I   +IGLPL M+
Sbjct: 3   RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G      + F   ++ +   +P   WDERLTTV A++ L +  ++RKKR + VD ++
Sbjct: 63  GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121

Query: 141 AALILQEVLD 150
           A++ILQ  LD
Sbjct: 122 ASIILQSYLD 131


>gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126]
 gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126]
          Length = 137

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 8/137 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID GTKR+GLA++DP +  A P   +  K + Q    L ++ ++E + A + G P N
Sbjct: 4   VLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQY---LANYFSSEEVEAVVCGYPTN 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             G          AF+ N+  +K   +P    DE  ++  A Q +I    +RK+R +K  
Sbjct: 61  EEGEATDATRHVDAFI-NLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKKSG 119

Query: 136 -VDSIAAALILQEVLDR 151
            +D I+AA+ILQ+ L+ 
Sbjct: 120 NIDKISAAIILQQFLEE 136


>gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
           27678]
 gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
 gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
           27678]
 gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
          Length = 158

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP    AHP   +     +  AL E++  I  E++   ++GLPL +
Sbjct: 5   GVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLLL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNV 127
           NG  G      R +  N+  R             V       DERLTTV+A Q L D  +
Sbjct: 65  NGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQI 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
             ++    VD  +A +ILQ  LDR
Sbjct: 125 GGRRHRPMVDQQSAVVILQTALDR 148


>gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1346]
          Length = 140

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I  +D+G++ +G+A+SD     A     +   +  +      L   +    +  F++GLP
Sbjct: 3   IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN S GPR  ++ A+  + I     +P  + DERLTTV A++ L++  N SR KR + 
Sbjct: 63  KNMNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAVMILQNYLD 136


>gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
 gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii SJ-7A-US]
 gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
 gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
 gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
 gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
 gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii SJ-7A-US]
 gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
          Length = 148

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 9/136 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIAAFIIGLP 76
            +D+G+K +G+AISD     A     +     R      A++ L  +   ++  F++GLP
Sbjct: 5   GLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKL--VREYDVTGFVLGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQ 134
            NM+GS+G  V  ++ +   + D K  +P  + DERLTT+ A ++LI+      RKKR +
Sbjct: 63  KNMDGSDGVSVSRSKNYGKRLED-KFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRKE 121

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 122 VIDQMAAVLILQNYLD 137


>gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
           4113]
 gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
           4113]
          Length = 154

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 63/130 (48%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + +      L + +        ++GLP +++
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVVVGLPRSLS 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +  R   VP    DER+TTV+A Q L    V+ KK    VD  A
Sbjct: 68  GREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKGRSVVDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 128 AVVILQSALE 137


>gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
           27679]
 gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
           27679]
 gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 158

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            +DLG  R+GLA+SDP    AHP   +     +  AL E++  I  E++   ++GLPL +
Sbjct: 5   GVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLLL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNV 127
           NG  G      R +  N+  R             V       DERLTTV+A Q L D  +
Sbjct: 65  NGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQI 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
             ++    VD  +A +ILQ  LDR
Sbjct: 125 GGRRHRPMVDQQSAVVILQTALDR 148


>gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
 gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
          Length = 142

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G KR G+A+SD G   A PR  ++ +       ELL+ I  E   A +IGLP+N++
Sbjct: 5   AIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLPINLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E       R F  ++  R+  +P  + +E L++  A++ L D   S  +    +D  A
Sbjct: 65  GEESLTTRQVRNFSKSLA-RRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVLDQQA 123

Query: 141 AALILQEVLDR 151
           A  ILQ  LD+
Sbjct: 124 AVRILQSFLDQ 134


>gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase
 gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 156

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I +  + +   + I  +D G K+IG+A+SD     A P    VRK   +    L   +  
Sbjct: 6   INEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLYGILIE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +  + +IGLPL++ G           F + MI +K  +     DER +T  A ++    
Sbjct: 66  NDAGSMVIGLPLDLFGMGNELCDKVMLFANRMI-KKYAINIYLHDERYSTAMATRVAKLA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           N+ RK+  +  D IAA LILQ+VLD +   +
Sbjct: 125 NIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155


>gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
 gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
          Length = 158

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 15  PNQPIAS------IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           P Q + S      +D+G+KRIGLA  D     A     + RK   +   ++   +    +
Sbjct: 3   PQQKLKSFISALGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQIVNARRV 62

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP  M+GS G +    + F H +  + + +P  + DERLT+  A+Q+LI  N S
Sbjct: 63  QVLVVGLPYAMDGSLGFQARHVQKFTHRLA-QALKLPVEYVDERLTSYQAEQLLIAENRS 121

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
             +    +D  AAALILQ+ LD
Sbjct: 122 PSRHKGLIDRKAAALILQQWLD 143


>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
 gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
          Length = 146

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G K IG+A+SDP    A     L R +  +    +L       +   +IGLP  
Sbjct: 3   ILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLPRT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G  GP+      F   +  + + +  ++WDER TT  A+++L+  +VSRKKR +  D 
Sbjct: 63  LAGEIGPQAQKVLRFGELLAQQGLKI--IYWDERFTTKEAEKVLLAADVSRKKRRRVKDI 120

Query: 139 IAAALILQEVLDR 151
           +AA L+L+  L++
Sbjct: 121 LAAVLLLEAYLEK 133


>gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
           13965]
 gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
           13965]
          Length = 330

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG++ IG+AISDP    A P   L R+   +    ++           ++G P  ++
Sbjct: 5   GLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPRRLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  GP   +  AF   +    V      WDERL+TV A+++LID ++SR++R   +D +A
Sbjct: 65  GRRGPEAEAAEAFAAGLQAAGVSR-VTLWDERLSTVQAERVLIDADLSRRRRKAIIDRMA 123

Query: 141 AALILQEVLDRISFLESSK 159
           A +ILQ      +FLE+ +
Sbjct: 124 ATVILQ------AFLEAQR 136


>gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 145

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 13/140 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77
           I  +D+G KRIG+A+SDP    A P  F++  +KV +   +L   I    I+  +IGLPL
Sbjct: 4   ILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVFEKINDL---IKNYKISKIVIGLPL 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRI 133
            + G EG +   T+ F  N+   K ++P     +F DER T+  A++ L      +K + 
Sbjct: 61  TLKGEEGEQARYTKDFAENL---KNHIPQDIEIIFIDERFTSSLAEKTL--SQTKKKNKK 115

Query: 134 QKVDSIAAALILQEVLDRIS 153
           +K+DS++A  ILQ  LDR+S
Sbjct: 116 EKIDSLSAVFILQTYLDRLS 135


>gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
 gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase
 gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
          Length = 177

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 7/142 (4%)

Query: 14  KPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAF 71
           +P Q +   +D G K++G+A+ +   + A P   L          + LL  I T  I   
Sbjct: 22  RPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRIGRV 81

Query: 72  IIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           ++GLPLNM+GS      R H   R   H +++++++VP   +DERLT+V A+++  ++ +
Sbjct: 82  VVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWELGL 141

Query: 128 SRKKRIQKVDSIAAALILQEVL 149
            + +R   +D I+A L+LQ  L
Sbjct: 142 IKNER-DPIDDISACLLLQSYL 162


>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
 gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
          Length = 178

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 80/138 (57%), Gaps = 9/138 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE----NIAAFI 72
           + +  +D+G K IG+A+SDP    A    +   K+ T+   + L+F T      N+   +
Sbjct: 40  ERLLGLDVGDKYIGIAVSDPLGITAQG--YRTWKRGTRD--DDLAFFTDVVEQFNVTTLV 95

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
            GLP +M G+E  +   TR F    + +++ +  V+ DERLT+ +++++LI+  V R+KR
Sbjct: 96  SGLPKDMEGNETAQARKTRNFCQ-FLKKRLNLEVVYIDERLTSKASERVLIEGGVRREKR 154

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D++AA +ILQ  LD
Sbjct: 155 KEYIDTLAAQMILQVYLD 172


>gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Gardel]
 gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase
 gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Gardel]
          Length = 156

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I +  + +   + I  +D G K+IG+A+SD     A P    VRK   +    L   +  
Sbjct: 6   INEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLYGILIE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +  + +IGLPL++ G           F + MI +K  +     DER +T  A ++    
Sbjct: 66  NDAGSMVIGLPLDLFGMGNELCDKVMLFANRMI-KKYAINIYLHDERYSTAMATRVAKLA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           N+ RK+  +  D IAA LILQ+VLD +   +
Sbjct: 125 NIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155


>gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas]
 gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase
 gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 156

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 1/151 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +++ +K +   + I  +D G K+IG+A+SD     A P    VR+   +    L S    
Sbjct: 6   VDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLYSIFVE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            ++ + +IG PL ++G E         F + +I R   +     DER +T  A ++    
Sbjct: 66  NDVGSIVIGWPLELSGVENELCQKVVMFANRIITR-YKINICLHDERYSTAMATRLAKLA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           N+ RK+     D I+A LILQ+VLD I   +
Sbjct: 125 NIKRKESQAIDDKISAVLILQQVLDIIKVYQ 155


>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
 gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
          Length = 138

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
            ID G KR+GLAISD  R      P+L  ++ T+ AL   ++  I  E++ A ++GLPL+
Sbjct: 5   GIDFGLKRVGLAISD--RSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G +       R F  ++  R+  +P    DERLT+  A++ L   ++   KR   +DS
Sbjct: 63  MDGEDTLTTRQARNFAQSL-GRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMALDS 121

Query: 139 IAAALILQEVLD 150
            AA +IL+  L+
Sbjct: 122 QAAVIILRTWLE 133


>gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
 gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
          Length = 173

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGLPLNM 79
            +D+GT RIG+A+SDP  R A P   L R       L  L+ +  E  A   ++GLP+++
Sbjct: 13  GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAVEVVVGLPVSL 72

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G+ G        +   +      VP    DER TTV A + L    ++ ++R   VD +
Sbjct: 73  RGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAGRQRRAVVDQL 132

Query: 140 AAALILQEVLD 150
           AAA++LQ+ LD
Sbjct: 133 AAAILLQDALD 143


>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 142

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 75/133 (56%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  +D+G ++IG+A+SD     A P+  +  K + +   ++L  I   +I   ++GLP
Sbjct: 2   ERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            ++NG +G +   T++FV  +  +   +  ++ DER T+  A + L  M++ + K  + +
Sbjct: 62  KDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKELI 121

Query: 137 DSIAAALILQEVL 149
           DS+AAA IL+  L
Sbjct: 122 DSLAAASILETYL 134


>gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
 gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
          Length = 140

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIG 74
           + I  +DLG++  G+AISDP    A     +  +    ++A   +  I  EN I   ++G
Sbjct: 2   EKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MNG  G R   +  F   + ++ + V  +  DERLTTV  +  LI  +VSRKKR +
Sbjct: 62  LPKHMNGDLGERAQISIDFKERL-EKMMDVEVILVDERLTTVMMENQLIFADVSRKKRKE 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ  LD
Sbjct: 121 VIDKLAAVQILQGYLD 136


>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 163

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+G+ RIG+A SDP    A P   + R +     L+ L+ I  E  +   ++GLP ++
Sbjct: 10  GVDVGSVRIGVARSDPSGLLATPVETVRRGR---GDLDRLAEIAAEYEVVEIVVGLPTSL 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG    + R F   +  R   +P   +DERLTTV+AQQ L    V  K +   VD  
Sbjct: 67  SGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVVDQA 126

Query: 140 AAALILQEVLD 150
           AA ++LQ  LD
Sbjct: 127 AAIVLLQAALD 137


>gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
           4028]
 gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
           4028]
          Length = 133

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I  ID G KRIGLA++  G  F    PF    K T+  L  +L+S I +E + A ++GLP
Sbjct: 3   ILGIDYGQKRIGLAMARQGMAF----PFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLP 58

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+MNG E         F  + + R+  +P    +E LT+  A+Q L +  V  +K  + +
Sbjct: 59  LDMNGDETLTTRQVLNF-RDSLARRTELPIHLVNEALTSFDARQRLREAGVPERKHKEML 117

Query: 137 DSIAAALILQEVLD 150
           D +AA  IL+  L+
Sbjct: 118 DQMAAVCILETYLE 131


>gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
 gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
          Length = 142

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  R G+A+SD   R A P   L   +V   A      +        + GLP  M 
Sbjct: 5   ALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTMA 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP+    R  V   I R   +P  F DERL++  A++IL +  +S K+   KVD I+
Sbjct: 65  GEEGPQAARVRE-VAGRISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMIS 123

Query: 141 AALILQEVLD 150
           A+L LQ  LD
Sbjct: 124 ASLFLQAWLD 133


>gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Roseomonas cervicalis ATCC 49957]
 gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Roseomonas cervicalis ATCC 49957]
          Length = 159

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I+ + +L  +L P+Q +  +D G K IG+A++D     A P   L R K+   A E+ 
Sbjct: 1   MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +    E     ++GLPL ++GS GP   + + +    +     +P   WDERL++ +  +
Sbjct: 61  AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTR-ALSEATGLPAALWDERLSSSAVNR 119

Query: 121 ILI 123
           +LI
Sbjct: 120 MLI 122


>gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
           56']
 gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
           56']
          Length = 163

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           IDLG  R+G+A++D    +AHPRP L  +        L +    E I  F++GLPL MNG
Sbjct: 33  IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
            EGP            +     V     DERLTTV A + L D  VS +K  ++VD  AA
Sbjct: 93  DEGPAARRA-LAFAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVDGAAA 151

Query: 142 ALILQEVLDR 151
           AL+LQ  LDR
Sbjct: 152 ALLLQAWLDR 161


>gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
 gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase
 gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM]
 gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
          Length = 142

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 11/137 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+AISD           L   ++ +T        L   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDE---LGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+G+ G  V  ++A+    ++ K  +P  + DERLTT+ ++++LI D  +  RKKR 
Sbjct: 62  PKNMDGTSGNSVARSKAY-GKRLEEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
 gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
          Length = 139

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SD    FAHP   + R K T+    +      EN  + ++G+P +++
Sbjct: 7   ALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIPKSLD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139
           G E  +    R F+  +      +  +  DERL+T+SA+++L +  N   + + + VD I
Sbjct: 66  GQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKVVDKI 125

Query: 140 AAALILQEVLD 150
           AAA+ILQ  LD
Sbjct: 126 AAAIILQTYLD 136


>gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 154

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 68  GGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 128 AVIILQQALESERVSGEPPGEG 149


>gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
           A2-165]
 gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
           A2-165]
          Length = 143

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I ++D G  R GLA+ DP      P  P +  K   + A E+      +     ++GLPL
Sbjct: 3   ILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGLPL 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           NM+G+EG R   +R     +   +++  +P   WDER +T  A  IL ++      R   
Sbjct: 63  NMDGTEGERAEKSRKLGKTL---QIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAI 119

Query: 136 VDSIAAALILQEVL 149
           +DS++A +IL++ L
Sbjct: 120 LDSVSATVILEDYL 133


>gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
 gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
          Length = 154

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVGLPRSLK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R FV  +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 68  GGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 128 AVIILQQALESERVSGKAPGEG 149


>gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
           M045]
 gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
           M045]
          Length = 154

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 63/140 (45%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVGLPRSLK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 68  GGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVLDRISFLESSKG 160
           A +ILQ+ L+      SS G
Sbjct: 128 AVIILQQALESERVSGSSPG 147


>gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
          Length = 142

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+A+SD           L   K+ +T        L   +    +  F++GL
Sbjct: 5   GLDIGSKTVGVAVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+G+ G  V  ++A+    ++ K  +P  + DERLTT+ ++++L+ D  +  RKKR 
Sbjct: 62  PKNMDGTSGASVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
           13280]
 gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
           13280]
          Length = 142

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  R G+A+SD   R A P   L   +V   A      +        + GLP  M+
Sbjct: 5   ALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTMS 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP+    R  V   I     +P  F DERLT+  A++IL +  ++ K+   KVD I+
Sbjct: 65  GEEGPQAEHIRE-VAGRIAAATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMIS 123

Query: 141 AALILQEVLD 150
           A+L LQ  LD
Sbjct: 124 ASLFLQAWLD 133


>gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
           MTCC 5463]
          Length = 142

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+A+SD           L   K+ +T        L   +    +  F++GL
Sbjct: 5   GLDIGSKTVGVAVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+G+ G  V  ++A+    ++ K  +P  + DERLTT+ ++++L+ D  +  RKKR 
Sbjct: 62  PKNMDGTSGASVTRSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
 gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
          Length = 171

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+AISDP  R A P   L   +V   A      +      A + GLP  + 
Sbjct: 23  ALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPFTLA 82

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G +GP+  S +      I +   +P  F DERL++  A++ L +     +    KVD IA
Sbjct: 83  GEQGPQAASLKERAQR-IAKACDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVDMIA 141

Query: 141 AALILQEVLD 150
           A++ LQ  LD
Sbjct: 142 ASIFLQSWLD 151


>gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 142

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+A+SD           L   ++ +T        L   +   +   F++GL
Sbjct: 5   GLDVGSKTVGVAVSD---ELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+G+ G  V  ++A+    ++ K  +P  + DERLTT+ +Q++L+ D  +  RKKR 
Sbjct: 62  PKNMDGTSGSSVARSKAY-GKRLEEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 154

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 62/130 (47%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + +      L + +        ++GLP +++
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVVVGLPRSLS 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F      R   VP    DER+TTV+A Q L    V+ KK    VD  A
Sbjct: 68  GREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKGRSVVDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 128 AVVILQSALE 137


>gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus
           RS-1]
 gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus
           RS-1]
          Length = 147

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I +ID G  R+GLA+  PG   A P   +  +        LL+ I  +N    +IG P
Sbjct: 2   EKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGYP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
               G EG      R F   +  R+  VP  + DE  +T  A + L +  +S ++ + KV
Sbjct: 62  ARAGGDEGLTGRQVRNFAARLA-RRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAKV 120

Query: 137 DSIAAALILQEVL--DRISFLESSKG 160
           D++AAA+IL+  L    + F  SS G
Sbjct: 121 DAMAAAVILERYLRGGELCFEPSSLG 146


>gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
 gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
          Length = 197

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+GT RIG+++SDP    A P   L R     + L  L+ +  E  A A ++GLP+ +
Sbjct: 49  GVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGLPMTL 108

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG      R +  ++  R   +P    DERLTT +A + + +  +S + R   VD  
Sbjct: 109 SGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARRGLVDQE 168

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 169 AAVQILQHALD 179


>gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
           glomerata]
 gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
           glomerata]
          Length = 164

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGLPLNM 79
            ID+GT RIG+A SDP  R A P   L R     + L+ ++ I  +  A   ++GLP  +
Sbjct: 10  GIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTRL 69

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G  GP     R +   +  R   VP    DERLTTV A + + +  +  + R   VD  
Sbjct: 70  SGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQE 129

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 130 AAVQILQSALD 140


>gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
 gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
          Length = 153

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
            +D+G  R+G+A SDP    A P   L R +      V     EL + +T       ++G
Sbjct: 11  GVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEAVEVVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+N+ G +GP     +A+V  +++    VP    DER++TV A + L +  V  +++  
Sbjct: 71  LPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQRA 130

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 131 VVDQAAAVEILQSWLD 146


>gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
           17244]
          Length = 144

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I ++D G  RIG+A+SD     A     + R K  +  +E +  +I   +    I+G PL
Sbjct: 5   ILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILGHPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N++G  G R   T  F  +++  K+ +P   WDERL+T  A++ L    V+ +K+ + +D
Sbjct: 65  NLSGERGTRALVTEEFC-DILKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKREVID 123

Query: 138 SIAAALILQEVLD 150
            +AA +IL   LD
Sbjct: 124 MMAAQIILSSYLD 136


>gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 139

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G  RIG+A SD     A P   + RKK T+    +      EN  A ++G+P +++
Sbjct: 7   SLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIPKSLD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
           G+E  +    R F+  +      +  +  DERLTTVSA ++L + N  +K  ++K   VD
Sbjct: 66  GTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESN--KKGALEKRKVVD 123

Query: 138 SIAAALILQEVLD 150
            IAAA+ILQ  LD
Sbjct: 124 KIAAAIILQTFLD 136


>gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis
           V583]
 gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
 gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
 gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1]
 gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
 gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
 gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
 gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
 gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
 gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
 gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
 gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0470]
 gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0635]
 gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 512]
 gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 516]
 gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0102]
 gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase
 gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           V583]
 gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
 gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
 gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1]
 gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
 gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
 gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
 gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
 gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
 gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
 gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
 gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 512]
 gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0102]
 gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0635]
 gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 516]
 gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0470]
 gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX2137]
 gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX4000]
 gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0017]
 gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0027]
 gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX2141]
 gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX4244]
 gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0012]
 gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0031]
 gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0043]
 gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0312]
 gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0645]
 gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1302]
 gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1341]
 gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0309B]
 gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0630]
 gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0309A]
 gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           OG1RF]
 gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
          Length = 140

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I  +D+G++ +G+A+SD     A     +   +  +      L   +    +  F++GLP
Sbjct: 3   IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN S GPR  ++ A+  + I     +P  + DERLTTV A++ L++  + SR KR + 
Sbjct: 63  KNMNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAVMILQNYLD 136


>gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
           10712]
          Length = 156

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        ++GLP +++
Sbjct: 10  AVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEVVVGLPRSLS 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   M      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 70  GREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKKGRSVIDQAA 129

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ  L  +R+S     +G
Sbjct: 130 AVIILQNALEAERVSGNPPGEG 151


>gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus
           amylolyticus DSM 11664]
          Length = 142

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+AISD  G          + +      +  L  I  E + A F++GLP N
Sbjct: 5   GLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
           M+G+ G  V  ++A+   +  +K  +P  + DERLTTV ++++L++      RKKR Q +
Sbjct: 65  MDGTSGHSVDRSKAYGERL-KKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKRKQVI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
           str. Boryong]
 gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase
 gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
          Length = 157

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  I + +++    + I  ID G K++G+AIS+     A P   ++     +   ++ 
Sbjct: 1   MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDRVN-KIQ 59

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                 NI A +IGLP  ++G+E  + H  + F  N +  K+ +P    DERLT+ +A  
Sbjct: 60  EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFA-NKLANKLLLPIFLCDERLTSKAANN 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           +L   N+ RK R    D +AA++IL+  L R+
Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRM 150


>gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
           DSM 40736]
          Length = 154

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + +      L   +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVGLPRSLK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R FV  +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 68  GGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 128 AVVILQQALESERVSGKAPGEG 149


>gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
 gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
           6BC]
 gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1]
 gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
           6BC]
 gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
 gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci
           6BC]
          Length = 150

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D G KRIGLA +      + P  F+   K  +   +LL  I  E N++  ++G P+ M
Sbjct: 12  GVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPM 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
              +   +      + +++     V  + WDERL++  A+++L  D  +SRKKR  K DS
Sbjct: 72  QKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDS 131

Query: 139 IAAALILQEVLDRISFLESS 158
           IAA LIL       SFLESS
Sbjct: 132 IAANLIL------TSFLESS 145


>gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
 gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
          Length = 170

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +D+G  R+G+A+SDPG   A P   L R +     L+ L+      ++   ++GLP  +
Sbjct: 19  GVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGLPRTL 78

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G  GP   +  A+   + +R   +P    DERLTTV+A ++L    V  KK+   VD  
Sbjct: 79  AGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAVVDQA 138

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 139 AAVEILQSWLD 149


>gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
 gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase
 gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
          Length = 141

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID G K IGLAISDP R  A        K        L   I   N++  ++G P++
Sbjct: 3   VLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYPIS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G E  +      +V   I   V +P  F DER TT+ A+++L++ ++ R+ R    + 
Sbjct: 63  LRGHENEKTKKI-EYVAERIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLKNK 121

Query: 139 IAAALILQEVLDRISF 154
            AA +ILQ+ LD +S 
Sbjct: 122 QAAVIILQKYLDSLSL 137


>gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680]
 gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase
 gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 156

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 10  AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLGLPRSLK 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 70  GGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRSVIDQAA 129

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 130 AVIILQQALESERVSGKAPGEG 151


>gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
 gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
          Length = 152

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I +ID G  R+GLA+SDP  R A P  F      T+ AL  ELL  IT++ IAA ++G P
Sbjct: 4   ILAIDYGQARVGLAVSDPEGRMAFP--FATVAWQTRDALFRELLDVITSQGIAAIVVGYP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
               G E       R FV  +  R+  +P V  DE  +T  A + L +  +S      +V
Sbjct: 62  ARAGGDESLTGRQVRKFVARL-SRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSARV 120

Query: 137 DSIAAALILQEVL 149
           D+ AAA+IL   L
Sbjct: 121 DAQAAAVILTRYL 133


>gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
           DSM 18315]
          Length = 140

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR GLA++D  +  A+    +   ++T+    L  +++ E +  F++GLP  
Sbjct: 4   IIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKF---LADYVSREPVERFVVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      +    AFV ++      +P  ++DER T+V A + ++D  + +KKR  K  V
Sbjct: 61  MNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDKGLV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LE+ K
Sbjct: 121 DEISAVIILQ------SYLENKK 137


>gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
 gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
          Length = 138

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S D GTKRIG+A++DP +  A+    +  K + +    L  ++ TE++  F++G P  
Sbjct: 4   IMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEF---LKKYLLTESVETFVVGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+G++       RAFV+ +      +P    DER T+  A   ++     +K R  K  V
Sbjct: 61  MDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDKALV 120

Query: 137 DSIAAALILQEVLDRI 152
           D+++A +ILQ  ++++
Sbjct: 121 DTVSATIILQSYMEKL 136


>gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake]
 gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase
 gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake]
          Length = 156

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           I++ VK +   + I  +D G K+IG+A+SD     A P    +++   +    L +    
Sbjct: 6   IDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLYNIFVE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            N+ + +IG P+ ++G E          + N I  K  +     DER +T  A ++    
Sbjct: 66  NNVGSMVIGWPIELSGIESELCQKV-VLLANRIIAKYKINIYLHDERYSTAMATRVAKLA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
           N+ RK+     D IAA LILQ+VLD
Sbjct: 125 NIKRKESQSIDDKIAAMLILQQVLD 149


>gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
           271]
 gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase
 gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
           271]
          Length = 142

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 5/135 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D GTKRIGLA +DP + FA P      + + +   E+      + I   +IG PLN
Sbjct: 9   IIAVDYGTKRIGLAKTDPLQLFAQPVGTFSEEALFRAIKEISGL---DGIGRILIGYPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            +GS         AF   + +    +P    +E  ++ SA QILI+  +SRKKR +K  +
Sbjct: 66  ADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHEKGRL 125

Query: 137 DSIAAALILQEVLDR 151
           DS +A ++LQ  LD+
Sbjct: 126 DSASACVLLQAHLDK 140


>gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
 gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
          Length = 135

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA+ + G  FA  R +LVR+ + +    LL F+  E +A  I+GLPL 
Sbjct: 3   LGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +  E  +       V  +  R V V    WDER TT +A   L       ++   K+D 
Sbjct: 63  TDLKESAQAKRVLPLVEALRARGVEVE--LWDERYTTKAAMARLRHAPRRVREDKGKLDE 120

Query: 139 IAAALILQEVLDR 151
           ++A ++L+  L R
Sbjct: 121 MSAVVLLEGYLAR 133


>gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
           F0204]
 gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
           F0204]
          Length = 139

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +DLG+   G++ SD G           +      AL+ +L  +  E     ++GLPL +
Sbjct: 6   GLDLGSVTCGVSFSDTGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGLPLLL 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           N   GPR      F   +++++  +P    DER TT  A+ IL++ +VSRKKR +K+D +
Sbjct: 66  NDDVGPRAQICLEF-GEVLEQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKKIDQL 124

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LDR
Sbjct: 125 AAVQILQTWLDR 136


>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
           4571]
 gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
 gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
           4571]
          Length = 142

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+G+K +G+++SD           L   K+ +T        L   +    +  F++GL
Sbjct: 5   GLDIGSKTVGVSVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+G+ G  V  ++A+    ++ K  +P  + DERLTT+ ++++L+ D  +  RKKR 
Sbjct: 62  PKNMDGTSGASVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase
 gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 151

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
           N     +DLG K +G+A+S  G    + +  F    K  Q    L   I+   I   I+G
Sbjct: 6   NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILG 65

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G +   +  F   + ++   V  + WDERL+TV A QIL   N  + K +Q
Sbjct: 66  YPKHMNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQ 125

Query: 135 KVDSIAAALILQEVLDRISF 154
             D IAA++ILQ  LD I  
Sbjct: 126 MKDEIAASIILQNYLDYIKL 145


>gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 136

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G  R+G+A+ DPG R A P   L   +V   A      +        + GLP  
Sbjct: 3   IMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLPYT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G EGP+         + + +   +P  F DERL++  A++ L +  +  ++   K+D 
Sbjct: 63  LAGQEGPQAARI-RAAADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKIDM 121

Query: 139 IAAALILQEVLD 150
           IAA+L LQ  LD
Sbjct: 122 IAASLFLQAWLD 133


>gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
           43184]
 gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
           43184]
          Length = 140

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR GLA++D  +  A+    +   ++T+    L  +++ E +  F++GLP  
Sbjct: 4   IIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRF---LADYVSREPVERFVVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      +    AFV ++      +P  ++DER T+V A + ++D  + +KKR  K  V
Sbjct: 61  MNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDKGLV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LE+ K
Sbjct: 121 DEISAVIILQ------SYLENKK 137


>gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor
           A3(2)]
 gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase
 gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 167

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 21  AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVGLPRSLK 80

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 81  GGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 140

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 141 AVIILQQALESERVSGRPPGEG 162


>gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1342]
          Length = 140

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I  +D+G++ +G+A+SD     A     +   +  +      L   +    +  F++GLP
Sbjct: 3   IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
            NMN S GPR  ++ A+  + I     +P  + DERLTTV A++ L++  + SR KR + 
Sbjct: 63  KNMNNSIGPRAEASIAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDKLAAVMILQNYLD 136


>gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
 gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
          Length = 152

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A S  G   A P   L  +       ELL+ IT  N AA  +GLP  M+
Sbjct: 8   AIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLPKLMS 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R++   ++ R   +P    DERL++  A   L  + V  +++ + VD +A
Sbjct: 68  GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMVDQLA 127

Query: 141 AALILQEVLDRIS 153
           A  IL   L+ ++
Sbjct: 128 AVTILTRALETLT 140


>gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 145

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 5/140 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P + + +ID GTKRIG+A SDP   FA P     R  +++    L + I +++IA  I
Sbjct: 3   LTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSKA---LGTMIQSDDIALVI 59

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G PL+ NG +         F+  + +    +     DE  ++  A+ IL+    SRK R
Sbjct: 60  VGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKVR 119

Query: 133 IQK--VDSIAAALILQEVLD 150
            QK  VDS AA ++L+E L+
Sbjct: 120 QQKGRVDSAAACILLREYLE 139


>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
 gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
 gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
 gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
 gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
 gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
          Length = 169

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            ID+G+ R+G+A SDP    A P   + R+K +   +  L+ + TE      ++GLP  +
Sbjct: 24  GIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVVVGLPRTL 83

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               GP  H        +  R   VP    DERLTTVSAQ+ L +  V  K +   +D +
Sbjct: 84  ADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQRAMIDQV 143

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 144 AAVGILQSWLD 154


>gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17]
 gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
 gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17]
 gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
          Length = 139

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 14/138 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           I SID G KR GLA++DP +  A+          T +++EL  F+ T    E +   +IG
Sbjct: 3   IVSIDYGKKRTGLAVTDPLQIIANGL-------ATVSSVELFGFLETYVKKEGVERIVIG 55

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P  MNG     +     F +        +P  ++DER T+V A + +ID  V +K R +
Sbjct: 56  RPTQMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQE 115

Query: 135 K---VDSIAAALILQEVL 149
               VD I+A +ILQ+ +
Sbjct: 116 NKGLVDEISATIILQDYM 133


>gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
 gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
          Length = 163

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G+ R+G+A  DP    A P   L R+       E+   +  ++    +IGLP  ++
Sbjct: 4   GVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRALD 63

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      RA+   +      VP    DERL+TV+A + + +   + ++  + VD  A
Sbjct: 64  GHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQAA 123

Query: 141 AALILQEVLD 150
           A +ILQ  LD
Sbjct: 124 AVVILQSALD 133


>gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76]
 gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 137

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
            +D+G++ +G+A+SD     A     +   +  +      L   +    +  F++GLP N
Sbjct: 2   GLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPKN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MN S GPR  ++ A+  + I     +P  + DERLTTV A++ L++  + SR KR + +D
Sbjct: 62  MNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVID 120

Query: 138 SIAAALILQEVLD 150
            +AA +ILQ  LD
Sbjct: 121 KLAAVMILQNYLD 133


>gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 145

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 13/140 (9%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNMNGS 82
           +G  R+GLA+SDP   FAHP   +     +  AL+ +++ I  E +   ++GLPL ++G+
Sbjct: 1   MGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGT 60

Query: 83  EGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNVSRK 130
           EG      R +       + N++D       ++P V   DERLTTVSA + L++  +  +
Sbjct: 61  EGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSR 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
           +    VD  +A +ILQ  LD
Sbjct: 121 RHRPVVDQQSAVVILQTALD 140


>gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
 gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase
 gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
          Length = 144

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + I +ID G KR GLA +DP   FA P      +K+      + SF+   ++   I+G
Sbjct: 5   PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKIITI---IKSFLQENSVEKIIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            PLN +G++ P       F+  +      +P    DE  ++  A ++LI+  +SRKKR +
Sbjct: 62  YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121

Query: 135 K--VDSIAAALILQEVLD 150
           K  +DS AA L+LQ  L+
Sbjct: 122 KGRLDSAAACLLLQHYLE 139


>gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
 gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
          Length = 152

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G++R+G+A+SD  RR A     L R+   Q    +  +I    +   ++G+PL+
Sbjct: 4   ILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGIPLD 63

Query: 79  -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
             +GS  P+     A    + +R   VP +  DER +T  +   LI + ++SRKKR + V
Sbjct: 64  SRDGSFTPKAMEIGAEARQLQER-FAVPVIGVDERFSTSKSNDFLIGVADLSRKKRKKVV 122

Query: 137 DSIAAALILQEVLD 150
           D++AA  ILQ  LD
Sbjct: 123 DTMAAQNILQGYLD 136


>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
 gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
 gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
          Length = 169

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            ID+G  R+G+A SDP    A P   + R+K +   +  L+ + TE      ++GLP  +
Sbjct: 24  GIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVVVGLPRTL 83

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               GP  H        +  R   VP    DERLTTVSAQ+ L +  V  K +   +D +
Sbjct: 84  ADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQRAMIDQV 143

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 144 AAVGILQSWLD 154


>gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC2047]
          Length = 142

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT RIG+A        A P P L  +       +L   I      AF++G+PLN
Sbjct: 9   ILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGVPLN 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+EGP     R F  N +  + + P    DERL+T+ A++ L + N    K    +DS
Sbjct: 69  MDGTEGPITPRARKFA-NRLHGRFHKPIYTMDERLSTIEAKEKLAEFN---NKNSIGLDS 124

Query: 139 IAAALILQ 146
           +AA LIL+
Sbjct: 125 MAATLILE 132


>gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
 gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
          Length = 165

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFIIGLPL 77
            +D+GT R+G+A++DP    A P   L R    + A +   +       ++    +GLP 
Sbjct: 12  GVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLPR 71

Query: 78  NMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           ++NG E       R +   ++     R         DERL+TV+A + L+D  VSR++ +
Sbjct: 72  SLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREHM 131

Query: 134 QKVDSIAAALILQEVLDR 151
            +VD  AA   LQ  +D+
Sbjct: 132 DRVDQAAAVTFLQTAVDQ 149


>gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium
           SGP1]
          Length = 146

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 17  QP--IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKKVTQTALE--LLSFITTENIA 69
           QP  + ++D+G+ R+G AISDP R  A      P + R    +   E  L+ +  T    
Sbjct: 5   QPGRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPT---- 60

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++G+P   +G+ GP        V  +      + F  WDER TTV A + +I+  VSR
Sbjct: 61  LVLVGMPTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSR 120

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
             R Q+VD IAA LIL+  L R
Sbjct: 121 SGRRQRVDKIAAVLILESWLAR 142


>gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
           44233]
 gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
           44233]
          Length = 169

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 12/142 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
            +D+GT R+G+A SDP    A P   L R     +         T +++A          
Sbjct: 20  GVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRDLVVEHDV 79

Query: 72  ---IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP  + G EG  V + RA+   +      VP V+ DERLTTV+A ++L    + 
Sbjct: 80  VEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRVLAQAGIK 139

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
            K R   VD +AA  ILQ  LD
Sbjct: 140 GKARRAVVDQVAATRILQNRLD 161


>gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132]
 gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           ND132]
          Length = 138

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
            ID G KR+GLA+SD       P   L  ++ T+ AL  EL   I  E I A ++GLPL 
Sbjct: 5   GIDFGLKRVGLAVSDRTGTLVSPLKTL--ERTTRQALFDELTEIIHDEAIEAVVVGLPLA 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G +       R F  ++  R++  P    DERLT+  A++ L    +   KR   +DS
Sbjct: 63  LSGEDTLTTRQARNFAESL-GRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAALDS 121

Query: 139 IAAALILQEVLD 150
            AA +IL+  LD
Sbjct: 122 QAAVVILRSWLD 133


>gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 149

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 8/138 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID G KRIG+A+SDP    A     + R    +   E+      EN+   ++GLPL+
Sbjct: 3   VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133
           M+G EG      R      I+    +P    DERLT+V A++ L++       + RKK  
Sbjct: 63  MSGYEGEEAVRARELA-KQIETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKK-- 119

Query: 134 QKVDSIAAALILQEVLDR 151
             +D+ AAA++LQ+ LD+
Sbjct: 120 LAIDAEAAAVLLQDYLDQ 137


>gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
 gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
          Length = 163

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 17  AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVGLPRSLK 76

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 77  GGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 136

Query: 141 AALILQEVL--DRISFLESSKG 160
           A +ILQ+ L  +R+S     +G
Sbjct: 137 AVIILQQALESERVSGRPPGEG 158


>gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 157

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 61/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      + + +        ++GLP ++N
Sbjct: 11  ALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPIEIVVGLPRSLN 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +      VP    DER+TTV+A Q L    V  KK    VD  A
Sbjct: 71  GREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKAKKGRSVVDQAA 130

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 131 AVVILQNALE 140


>gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 141

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
            P   ID G  RIG+A +DP    AHP   + R + T     ++  +    I   ++GLP
Sbjct: 5   HPALGIDYGEARIGIAATDPVGIMAHPVETIHRHQ-TDGISRIVQLVQERGIRTLVLGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           + M+G+EG      RAF   +      +P +F DE LTTV AQ+ L       K     +
Sbjct: 64  VRMDGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNFRPII 123

Query: 137 DSIAAALILQEVLD 150
           D +AA  IL   LD
Sbjct: 124 DQVAAVEILNTWLD 137


>gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
          Length = 140

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G +RIG+A+SD       P   + R K  +   +++  I   +I   + GLP N
Sbjct: 6   ILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGLPKN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           M+G+ G +   T  FV  +  +++  P    VF DERL+T SA+Q++    V +K +   
Sbjct: 66  MDGTVGFQGEKTMQFVEQL--QQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKNM 123

Query: 136 VDSIAAALILQEVL 149
           +D+IAA  IL+  L
Sbjct: 124 IDTIAAVFILETYL 137


>gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 138

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D G KR G+A++DP +   +    LV    +     LL +I  E +   ++G P  
Sbjct: 4   ILSVDYGKKRTGIAVTDPLQIICNG---LVTVSSSTLVDFLLDYIQKEEVELIVVGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG     +   + FV         +P V++DER T+V A + +ID  + +K R  K  V
Sbjct: 61  TNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES +
Sbjct: 121 DEISATIILQ------SYLESKR 137


>gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
 gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
 gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1]
 gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus
           CTV-05]
 gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
 gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
 gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1]
 gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus
           CTV-05]
          Length = 142

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISD  G          + +      +  L   +    +  F++GLP N
Sbjct: 5   GLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRIQKV 136
           M+G+ G  V  ++A+    ++ K  +P  + DERLTT+ ++++L+ D  +  RKKR Q +
Sbjct: 65  MDGTSGSSVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRKQVI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
           str. Ikeda]
 gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase
 gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 157

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGL 75
           + I  ID G K++G+AIS+     A P   +      Q  +  +  I    NI A +IGL
Sbjct: 17  KQILGIDFGEKKVGVAISNIEHTVAMPLQTIF--ATNQDRINKIQEIAVAYNIGAIVIGL 74

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  ++G+E  + H  + F  N +  K+ +P    DERLT+ +A  +L   N+ RK R   
Sbjct: 75  PFKLDGTETSQTHRVKDFA-NKLANKLLLPIFLCDERLTSKAANNLLKMGNIKRKVRNAI 133

Query: 136 VDSIAAALILQEVLDRI 152
            D +AA++IL+  L R+
Sbjct: 134 DDRVAASIILEGTLKRM 150


>gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC
           43063]
 gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC
           43063]
 gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 152

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 66/133 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A S  G   A P   L  +       ELL+ IT  N AA  +GLP  M+
Sbjct: 8   AIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLPKLMS 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R++   ++ R   +P    DERL++  A   L    V  +++ + VD +A
Sbjct: 68  GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQLA 127

Query: 141 AALILQEVLDRIS 153
           A  IL   L+ ++
Sbjct: 128 AVTILTRALETLT 140


>gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
           51259]
 gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
           51259]
          Length = 138

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 21/148 (14%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFI----TTENIAAFII 73
           I +ID G KR G+A++D  +        ++   +T  A  ELL+F+    T E++  F+I
Sbjct: 4   ILAIDYGKKRTGIAVTDILQ--------IIPNGLTTVATHELLNFLKAYTTKEDVERFVI 55

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP   NG          AF   +      +P  F+DER T+  A Q ++   + +K+R 
Sbjct: 56  GLPRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQ 115

Query: 134 QK--VDSIAAALILQEVLDRISFLESSK 159
           +K  VD I+A +ILQ      S++ES K
Sbjct: 116 EKALVDEISACIILQ------SYMESKK 137


>gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
          Length = 141

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
           ++D GTKR G+A+SD  +  A+     +    T T  + L +++  E++   I+GLP  M
Sbjct: 6   ALDYGTKRTGIAVSDTLKIIANG----LTTVPTHTLFDYLKTYLEREDVECIIVGLPKQM 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
           N      +   R FV  + +    +P   +DER T+  AQ+ +ID  + +K R  K  VD
Sbjct: 62  NNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNKALVD 121

Query: 138 SIAAALILQEVLDRISFLES 157
            I+A +ILQ      S++ES
Sbjct: 122 EISAVIILQ------SYMES 135


>gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
 gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
 gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
           TK-6]
          Length = 133

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 7/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + ++D G+KRIGLA+ D     A P   F  R+ V +   ++ + I+   ++  I+GLPL
Sbjct: 3   VLALDYGSKRIGLALGDTSLNIASPLGVFENREGVVE---KIRNLISEYRVSLLIVGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              G +G R      FV  + +     +  + WDER TT  A  +L D+  +++K+++  
Sbjct: 60  TPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLLQDLPPTKRKKLK-- 117

Query: 137 DSIAAALILQEVLDRI 152
           DS++A +IL+E L+ +
Sbjct: 118 DSLSAYIILKEYLESL 133


>gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
 gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
          Length = 157

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 62/130 (47%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      + + +        ++GLP ++ 
Sbjct: 11  AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   +      VP    DER+TTV+A Q L    V+ KK    +D  A
Sbjct: 71  GGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 130

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 131 AVIILQTALE 140


>gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 150

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP +      P  +    T T L+ L  +++ E +  F++GLP 
Sbjct: 16  ILAIDYGRKRTGLAVTDPLKII----PGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPR 71

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MN  E   +   R F   +      +P  + DER T+  AQ+ +++  + + KR  K  
Sbjct: 72  RMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 131

Query: 136 VDSIAAALILQEVLD 150
           VD ++A +ILQ  LD
Sbjct: 132 VDEVSAVIILQSYLD 146


>gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
           W83]
 gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase
 gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis
           W83]
          Length = 138

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP +      P  +    T T L+ L  +++ E +  F++GLP 
Sbjct: 4   ILAIDYGRKRTGLAVTDPLKII----PGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPR 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MN  E   +   R F   +      +P  + DER T+  AQ+ +++  + + KR  K  
Sbjct: 60  RMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 119

Query: 136 VDSIAAALILQEVLD 150
           VD ++A +ILQ  LD
Sbjct: 120 VDEVSAVIILQSYLD 134


>gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium
           HTCC2181]
 gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium
           HTCC2181]
          Length = 148

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAA 70
           +++PN  + + D G K+IG+AI +   + AHP    +RK      +E++  +  E     
Sbjct: 9   NIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLE-TIRKVKKSERIEIIENLLNEWEPGI 67

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SR 129
            ++GLPLN +G+E       + F   + +R   VP V  DER T+V A +IL++ NV S 
Sbjct: 68  VVVGLPLNEDGTESRLTLLAQNFAKKIKNR-FQVPIVMVDERYTSVEA-KILLNENVKSI 125

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           KK  Q +D +AA +IL    DR
Sbjct: 126 KKGNQVIDQVAAQIILGSYFDR 147


>gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 119

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP +MNG EG R  ++R +   + + +  +   + DERLTT  A+++LID  V RK+
Sbjct: 36  VLGLPKHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKE 94

Query: 132 RIQKVDSIAAALILQEVLD 150
           R + +D +AA LILQ  LD
Sbjct: 95  RKKSIDKLAAVLILQNYLD 113


>gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
 gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
          Length = 137

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 14/140 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +IDLGTKR GLA++DP +  A+P   +   K+      + ++I  E +   ++GLP  
Sbjct: 4   VLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDF---IKAYIAKEEVDTLVLGLPTK 60

Query: 79  MNGSEG---PRVHSTRAFVH-NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +NG +    P+V + +  +  N   +KV       DER T+  A Q +I M   +K R +
Sbjct: 61  LNGKDNEMTPKVMAMKTKLEKNFPSQKVE----LVDERFTSKMAMQSMITMGSKKKDRRE 116

Query: 135 K---VDSIAAALILQEVLDR 151
           K   +D ++AA+ILQ  L+R
Sbjct: 117 KAGNLDKVSAAIILQSYLER 136


>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
 gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
          Length = 137

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GTKRIG+A++DP +  A     +  K V +    L  +++ E + +F++G+P  
Sbjct: 3   IMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEY---LKKYVSQEQVESFVVGMPKQ 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           ++GS+       + F++ +      +P V  DER T+  A   + +  + R KR +K  V
Sbjct: 60  LDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGLV 119

Query: 137 DSIAAALILQEVLDRI 152
           D+I+A +ILQ+ L  I
Sbjct: 120 DAISAVIILQDYLKTI 135


>gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 138

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D G KR G+A++DP +   +    LV    +     LL +   E +   ++G P  
Sbjct: 4   ILSVDYGQKRTGIAVTDPLQIICNG---LVTVSSSTLVDFLLDYTKREEVELIVVGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG     +   R FV         +P V++DER T+V A + +ID  + +K R  K  V
Sbjct: 61  TNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES +
Sbjct: 121 DEISATIILQ------SYLESKR 137


>gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
 gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
          Length = 154

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 62/130 (47%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      + + +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   +      VP    DER+TTV+A Q L    V+ KK    +D  A
Sbjct: 68  GGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 128 AVIILQTALE 137


>gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 139

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SD     A P   + R+KV +    +   +  EN  + +IG+P +++
Sbjct: 7   ALDVGDVRIGVAKSDIMGILATPLEVIDRRKV-KAVKRIEEILIQENTKSLVIGIPKSLD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
           G+E  +    R F+  +      +     DERLTTVSA ++L + N  +K  ++K   VD
Sbjct: 66  GTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETN--KKGALEKRKVVD 123

Query: 138 SIAAALILQEVLDR 151
            +AAA+ILQ  LDR
Sbjct: 124 KVAAAIILQTFLDR 137


>gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
           33331]
          Length = 157

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 59/130 (45%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        I+GLP ++ 
Sbjct: 11  AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVGLPRSLG 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF          +P    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 71  GGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRSVIDQAA 130

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 131 AVVILQNALE 140


>gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 152

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 66/133 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A S  G   A P   L  +       ELL+ IT  N AA  +GLP  M+
Sbjct: 8   AIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLPKLMS 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R++   ++ R   +P    DERL++  A   L    V  +++ + VD +A
Sbjct: 68  GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQLA 127

Query: 141 AALILQEVLDRIS 153
           A  IL   L+ ++
Sbjct: 128 AVTILTRALETLT 140


>gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
           33269]
 gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
           33269]
          Length = 137

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G KR G+A++DP +  A     L     ++    L+ ++  E +   +IG P+ 
Sbjct: 4   ILSIDYGRKRTGVAVTDPLQLIAGG---LATVATSELFNYLMQYVQHEEVERIVIGKPMQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG     +     FV         +P  ++DER T+V AQ+++ID  + +K R  K  V
Sbjct: 61  TNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKALV 120

Query: 137 DSIAAALILQEVL 149
           D I+A +IL++ +
Sbjct: 121 DEISATIILEDWM 133


>gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 148

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP R      P  +    +   L+ LS +I  E +   ++G P 
Sbjct: 4   ILAIDYGKKRTGLAVTDPLRI----TPGGLATVASSELLQYLSEYIPREGVDLVVVGYPR 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MN  E   +     FV  +  R   +  V++DER T+  AQ+ +++  + ++KR  K  
Sbjct: 60  QMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNKAL 119

Query: 136 VDSIAAALILQEVLDRISF 154
           VD ++A +ILQ  ++ +++
Sbjct: 120 VDEVSAIIILQSYMESLAY 138


>gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
 gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
          Length = 136

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A+SD     A P   L R+   +    +      E     ++GLPL+ +
Sbjct: 2   ALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLHND 61

Query: 81  --GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E  RV S    +   + R++ +P  F +E  TT+ A + +++ ++SRK+R + VD 
Sbjct: 62  QIGPEAQRVIS----LGRRLQRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDK 117

Query: 139 IAAALILQEVLD 150
           +AAALIL+  LD
Sbjct: 118 VAAALILRRWLD 129


>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
 gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
          Length = 168

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELL 60
           I L  DL+KS K N  +  +D+G K +GLAISD   + A P   L+RKK  +   A +  
Sbjct: 7   IALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDFQ 65

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSA 118
           S I+  ++A F++G P +   S    +H  + F+ ++  I +   + + FWDE  T+ + 
Sbjct: 66  SLISELSLAGFVVGYPFDRQRSTPDALH-VKLFIDDLRKIGKLEGLKYTFWDECFTSKNV 124

Query: 119 QQIL--IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           + ++  +D++    K I  +D  AA  ILQ  LD ++
Sbjct: 125 ELLVQPLDLHPVEAKTI--MDKFAAVGILQGYLDYVN 159


>gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase
 gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 142

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
            +D+G+K IG+A+SDP G          + +      +  L  +  E  A  F++GLP N
Sbjct: 5   GLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
           M+G+ G  V  ++A     +++K  +P  + DERLTTV++++IL++      R++R + V
Sbjct: 65  MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
 gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
          Length = 134

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+SDP +  A P   L RK   +T  ELL  +  + +   ++G+P+N  
Sbjct: 2   ALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINAQ 61

Query: 81  GSE---GPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           G +   G ++    A + + +  + Y +P    DE  +T  A+++   +     K  +++
Sbjct: 62  GEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEEL 117

Query: 137 DSIAAALILQEVLD 150
           D  AAALIL+E L+
Sbjct: 118 DDYAAALILKEWLE 131


>gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
 gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
          Length = 142

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G KR G+A++DP +  A     +   +V +    L +++  E + AF++GLP  ++
Sbjct: 6   AIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKF---LKAYLVREPVEAFVVGLPKGLD 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
           G +       R FV ++ +    +P  + DER T+V A Q +I    ++K R +K  +D 
Sbjct: 63  GEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREKGNIDK 122

Query: 139 IAAALILQEVLDR 151
           ++AA+ILQ  ++R
Sbjct: 123 VSAAIILQSYMER 135


>gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13]
          Length = 140

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFII 73
           I ++D G  R GLA  D     A P        +++T  E+    T E          ++
Sbjct: 3   ILAVDFGDARTGLACCDRSELLASPAGV-----ISETDFEVCIQKTAEAAREHRAEQIVV 57

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           G P NMNG+ G R      F   +  R +  +  V WDER TTVSA + L   N   KKR
Sbjct: 58  GYPKNMNGTIGERAEKCALFAEKL--RTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKR 115

Query: 133 IQKVDSIAAALILQEVL 149
              VD++AA +IL+  L
Sbjct: 116 KAVVDAVAATIILESYL 132


>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
 gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
          Length = 166

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
           ++D+G+ R+G+A+SDP    A P   L R     + L+ L+ + TE+ +   I+GLP  +
Sbjct: 24  AVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVIVGLPRTL 83

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
              +G       A+   +  R   VP    DERLTTV+A ++L    V  +K+   VD  
Sbjct: 84  ANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQRAVVDQA 143

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA  ILQ  LD  +   + KG
Sbjct: 144 AAVEILQAWLDAAAAHRARKG 164


>gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22]
 gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei
           87.22]
          Length = 154

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 60/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        I+GLP ++ 
Sbjct: 8   ALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVGLPRSLK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +      VP    DER+TTV+A Q L    V  KK    +D  A
Sbjct: 68  GGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ+ L+
Sbjct: 128 AVIILQQALE 137


>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 140

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID G KR+GLA+SD   +   P   + R       LELL+ I    I A ++GLPL  +
Sbjct: 5   GIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGPD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G +         F+ ++ DR+  +P    +E  T++ A+ IL    +  +K+ + +D  A
Sbjct: 65  GEKSLTCRQAENFMQSL-DRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLDQAA 123

Query: 141 AALILQEVLDRISFLES 157
           A +IL+  L  I   E 
Sbjct: 124 AVIILESFLAGIPLREG 140


>gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
           16992]
          Length = 151

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 13/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            IDLG  R+GLA+SDPG   A+P   +     +  AL E++  I  E +   I+GLPL +
Sbjct: 5   GIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPLLL 64

Query: 80  NGSEGPRVHSTRAFVHNM-------IDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127
           +G EG      R +  N+       ++   Y    VP +   DERLTTV+A   L D  +
Sbjct: 65  SGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDAQI 124

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
              +    VD  +A +ILQ  +DR
Sbjct: 125 GGHEHRPMVDQQSAVVILQTAIDR 148


>gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
 gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
          Length = 149

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D    FA     L R    +   +L   +    +   ++GLP +MN
Sbjct: 14  GLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSMN 73

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G +    + +   +  + + +P  + DERLT+  A+Q+L D ++S  +    +D  A
Sbjct: 74  GTIGFQAKKVQKYATGLA-KALDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRKA 132

Query: 141 AALILQEVLDR 151
           AA+ILQ+ LD+
Sbjct: 133 AAIILQQWLDQ 143


>gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
 gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 142

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
            +D+G+K IG+A+SDP G          + +      +  L  +  E  A  F++GLP N
Sbjct: 5   GLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
           M+G+ G  V  ++A     +++K  +P  + DERLTTV++++IL++      R++R + V
Sbjct: 65  MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase
 gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 142

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
            +D+G+K IG+A+SDP G          + +      +  L  +  E  A  F++GLP N
Sbjct: 5   GLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
           M+G+ G  V  ++A     +++K  +P  + DERLTTV++++IL++      R++R + V
Sbjct: 65  MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
 gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
          Length = 143

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     + RK   Q   +L + +T  N+   ++GLP  M+
Sbjct: 8   GLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVVGLPYCMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + F    I + + +P  + DERLT+V A+  L       +     VD +A
Sbjct: 68  GSIGFQAKQVQKFAKR-ISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNKGLVDRLA 126

Query: 141 AALILQEVLD--RISFL 155
           A +ILQ+ LD  R SF+
Sbjct: 127 ATIILQQWLDQRRASFV 143


>gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis
           ATCC 25196]
 gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase
 gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC
           25196]
          Length = 151

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 6   IEDLVKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
           +E+  K+ +P+   A + D G KRIG+AI +     AHP   L  K   +    +   + 
Sbjct: 1   MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD 60

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
                  ++GLP++ +G+E      +R F H +  R   +  V  DER T++SA   L +
Sbjct: 61  EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQAR-FGIRTVLEDERYTSISASSALDE 119

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151
            +V  +++ Q +D IAA LILQ   D+
Sbjct: 120 ASVRGRRQKQVLDQIAAQLILQSYFDQ 146


>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
           43160]
 gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
           43160]
          Length = 222

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+GT R+G+AISDP    A P   + R +       + + +    +   I+G P +++
Sbjct: 87  GIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHLS 146

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G      RA+   +  R   VP    DERL+TV+A   L    +  +++   +D  A
Sbjct: 147 GASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQAA 206

Query: 141 AALILQEVLD 150
           A +ILQ  LD
Sbjct: 207 AVVILQAYLD 216


>gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           434/Bu]
 gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70]
 gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           70s]
 gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           D(s)2923]
 gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           L2tet1]
 gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase
 gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase
 gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis]
 gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
 gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis
           Sweden2]
 gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           E/150]
 gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           E/11023]
          Length = 148

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 14  KPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIA 69
           K  Q    ID G KRIGLA  S P      P P      R  +T TA  L+S I    + 
Sbjct: 5   KQQQAFLGIDYGKKRIGLAFASSP---LLIPLPIGNVEARSSLTLTAQALVSIIKERAVT 61

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS 128
             + G PL M  +    V S    +  +I     +  + WDERL++  A+++L  D  ++
Sbjct: 62  TVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLN 121

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           RK+R    DS+AA LIL   LD
Sbjct: 122 RKQRKNSSDSLAATLILSSFLD 143


>gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase
 gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold,
           yqgF family [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 155

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           + +KS+  ++ I  +D+G K+IG+A SD  +  A       RK +++    L        
Sbjct: 8   EFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLNRIFKKNE 67

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
             + +IGLPL ++G +     +   F + MI +K  V     DE L+T  A   L    V
Sbjct: 68  AGSIVIGLPLEIDGQKSEWCKTIIKFANKMI-KKYKVSTYLQDESLSTSIAAHTLKISGV 126

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLE 156
           S  K  +  D I+A +ILQ  LD+I+ ++
Sbjct: 127 STTKSKRIDDKISACIILQRTLDKINVIK 155


>gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
 gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
          Length = 141

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR+GLA+SDP    A     ++ +++ +    L ++++ E +  F++G P  
Sbjct: 4   ILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRF---LEAYLSHEKVDLFVVGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+ S+   +   + F+  +  R  ++P V +DER T+V A + L++    +K R  K  +
Sbjct: 61  MDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDKALI 120

Query: 137 DSIAAALILQEVLDR 151
           D+++A +IL   +++
Sbjct: 121 DTMSATIILTSYMEQ 135


>gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 144

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 5/130 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID G KR G+A++DP +  A+    +    V      ++S++  E++   ++GLP  
Sbjct: 4   VLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVRQEHVERIVVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG +   +    +FV  + +R   +P  F+DER T+V A Q ++   + +K R  K  V
Sbjct: 61  ANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNKALV 120

Query: 137 DSIAAALILQ 146
           D I+A +ILQ
Sbjct: 121 DEISATIILQ 130


>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 143

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP          L   K+ ++       ++   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
           P NM+GS G  V  ++ +   + + K  +P  + DERLTTV A +IL++       V RK
Sbjct: 62  PKNMDGSSGRSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
           K I   D +AA LILQ  L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137


>gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4]
 gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4]
          Length = 139

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR+GLA++D     A+    +   +V  T LE   +I  E +  F+IGLP  
Sbjct: 4   ILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEVL-TYLE--KYIAKEPVEKFVIGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MNG +   +   R F   +  +   +  V+ DER T+V A + +++  + +K R  K  V
Sbjct: 61  MNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNKELV 120

Query: 137 DSIAAALILQEVLDRI 152
           D I+A +ILQ  L+ I
Sbjct: 121 DKISATIILQSYLESI 136


>gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 138

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTKRIG+A++DP +  A+    +   ++      L +++ TE +  F++G P  M+
Sbjct: 5   AFDYGTKRIGIAVTDPLQIVANALTTVHPDEIVDF---LKNYLQTEQVETFVVGKPRQMD 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
           GS+         F+  +  +   +P    DER T+  A  ++    + + KR QK  VD+
Sbjct: 62  GSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGLVDT 121

Query: 139 IAAALILQEVLDRISFL 155
           I+A +ILQ  +D  SFL
Sbjct: 122 ISATIILQSYMDSRSFL 138


>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
 gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 141

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G +RIG+A++D     A+P   L R    +    +   I    +   + GLP  
Sbjct: 3   LMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPKT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G  GP+     +F+  +  R   VP + WDERLTT   +++L+  ++ R++R + VD 
Sbjct: 63  LSGQIGPQGDKVLSFLDKLRVRST-VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVDK 121

Query: 139 IAAALILQEVLD 150
           +AA LIL   L+
Sbjct: 122 LAATLILNSYLN 133


>gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 138

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTKRIG+A++DP +  A+    L      +    L +++ TE +  F++G P  
Sbjct: 3   LMAFDYGTKRIGIAVTDPLQIVANA---LTTVHPNEIFDFLKNYLQTEQVETFVVGKPRQ 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+GS+         F+  +  +   +P    DER T+  A  ++    + + KR QK  V
Sbjct: 60  MDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGLV 119

Query: 137 DSIAAALILQEVLDRISFL 155
           D+I+A +ILQ  +D  SFL
Sbjct: 120 DTISATIILQSYMDSRSFL 138


>gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 142

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G+K +G+A+SD     A       +   K       L   +   +   F++GLP N
Sbjct: 5   GLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRIQKV 136
           M+G+ G  V  ++A+   + D K  +P  + DERLTT+ ++++L+ D  +  RKKR Q +
Sbjct: 65  MDGTSGASVARSKAYGKRLED-KFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRKQVI 123

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 124 DQMAAVLILQNYLD 137


>gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
          Length = 143

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP          L   K+ ++       ++   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
           P NM+GS G  V  ++ +   + + K  +P  + DERLTTV A +IL++       V RK
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
           K I   D +AA LILQ  L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137


>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 141

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G K+IG+A+SDP    A+P   + RK   +T  +LL  I   ++   IIG+P++
Sbjct: 4   VMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGIPIS 63

Query: 79  MNGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             G E       + F       + +R   +  VF DE  +++ A+++   +  + K   +
Sbjct: 64  SEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLGKTEK---E 120

Query: 135 KVDSIAAALILQEVL 149
           ++D IAAAL+L+E L
Sbjct: 121 EIDDIAAALMLKEWL 135


>gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis
           3_1_12]
 gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 138

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T  + ELL FIT     E +   IIG
Sbjct: 4   IIAIDYGRKRTGIAVSDAMQIIAN-------GLTTVPSHELLDFITNYVKQEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +I+  + +K R  
Sbjct: 57  LPKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISFLESSK 159
           K  VD I+A +ILQ      S+LES +
Sbjct: 117 KALVDEISATIILQ------SYLESKR 137


>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 147

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            ID+G  R+G+A SDP    A P   + R+     AL  +  I  E +    +IG P ++
Sbjct: 8   GIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVIGDPTSL 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G         R F   ++DR   +P  + DER TT  A  +L +   + K+R + VD+ 
Sbjct: 68  DGKARQSADKARRFAQKIVDR-TGLPVRYVDERFTTTQAHLMLQEAGKTSKQRRETVDAQ 126

Query: 140 AAALILQEVLDRISFLESS 158
           AA +ILQ  LD ++  ++S
Sbjct: 127 AAVVILQTALDALAREDNS 145


>gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 137

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID G KR GLA++D  +  A+    +     T T  E L ++I  E +   IIGLP 
Sbjct: 4   ILAIDYGQKRTGLAVTDTLQLIANGLDTIP----THTLYEFLCAYIEKEPVERIIIGLPR 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +     FV      +  VP  ++DER T+V A + +ID  + +K R  K  
Sbjct: 60  QTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDKAL 119

Query: 136 VDSIAAALILQEVLD 150
           VD I+A +ILQ+ L+
Sbjct: 120 VDKISATIILQDYLE 134


>gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis
           Fe/C-56]
 gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase
 gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 150

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +D G +RIGLA +      + P  F+   K +  TA  L   I    ++  ++G P+ M 
Sbjct: 13  VDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCVVLGNPIPMQ 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVDSI 139
             +   +      + ++I    +V  V WDERL++  A+++L  D  +SRK+R  K DS+
Sbjct: 73  IGQKSSLQEEILKISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSRKQRKGKTDSV 132

Query: 140 AAALILQEVLDRISFLESS 158
           AA LIL       +FLESS
Sbjct: 133 AATLIL------TNFLESS 145


>gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           A/HAR-13]
 gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           6276]
 gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           6276s]
 gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase
 gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase
 gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX]
 gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13]
 gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/9768]
 gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/11222]
 gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/11074]
 gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/9301]
 gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
 gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
          Length = 148

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 14  KPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIA 69
           K  Q    ID G KRIGLA  S P      P P      R  +T TA  L+S I    + 
Sbjct: 5   KQQQAFLGIDYGKKRIGLAFASSP---LLIPLPIGNVEARSSLTLTAQALVSIIKERAVT 61

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS 128
             + G PL M  +    V S    +  +I     +  + WDERL++  A+++L  D  ++
Sbjct: 62  TVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLN 121

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           RK+R    DS+AA LIL   LD
Sbjct: 122 RKQRKNPSDSLAATLILSSFLD 143


>gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533]
 gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
 gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
          Length = 143

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP          L   K+ ++       ++   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
           P NM+GS G  V  ++ +   + + K  +P  + DERLTTV A +IL++       V RK
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
           K I   D +AA LILQ  L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137


>gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
          Length = 151

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
           N     +DLG K +G+A+S  G    + +  F    K  +    L   I+   I   ++G
Sbjct: 6   NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLG 65

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G +   +  F   + ++   V  + WDERL+TV A Q+L   N  + K +Q
Sbjct: 66  YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQ 125

Query: 135 KVDSIAAALILQEVLDRISF 154
             D IAA +ILQ  LD I  
Sbjct: 126 MKDEIAATIILQNYLDYIKL 145


>gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
 gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
          Length = 138

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)

Query: 19  IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           I + D GTKR+G+A++DP      G    HP+  +           L  ++ TE + AF+
Sbjct: 4   ILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEY---------LKKYLLTEQVEAFV 54

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IG P  M+GS        + F   +      +P  + DER T+  A Q ++   + ++ R
Sbjct: 55  IGDPKQMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDR 114

Query: 133 IQK--VDSIAAALILQEVLDR 151
             K  VD+IAA +ILQ  +++
Sbjct: 115 KDKSRVDTIAATIILQYFMEQ 135


>gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
 gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1]
 gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
 gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase
 gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
 gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1]
 gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
          Length = 143

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 17/146 (11%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP          L   K+ ++       ++   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+GS G  V  ++ +   + + K  +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKE-KFDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
           + +D +AA LILQ      S+LE+++
Sbjct: 121 KVIDQMAAVLILQ------SYLEATR 140


>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
           FI9785]
 gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
           FI9785]
          Length = 143

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 17/140 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP          L   K+ ++       ++   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
           P NM+GS G  V  ++ +    +  K  +P  + DERLTTV A +IL++       V RK
Sbjct: 62  PKNMDGSSGHSVERSKQY-GGRLKEKFDLPVYYVDERLTTVQADRILVEEAGVHDRVERK 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
           K I   D +AA LILQ  L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137


>gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
 gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
          Length = 142

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           SL   + I +ID GTKRIG A SDP + FA P   + R ++ +   +L      E I   
Sbjct: 2   SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRAELFE---KLEQMARNEEIDKI 58

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G PLN +G++         F+  +      +P    DE  ++  A QIL    +SRK+
Sbjct: 59  LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118

Query: 132 RIQK--VDSIAAALILQEVLD 150
           R +K  +D  AA +IL+E LD
Sbjct: 119 RNRKGRLDCAAACVILREYLD 139


>gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
 gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
          Length = 154

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 61/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVGLPRSLG 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   +      VP    DER++TV+A Q L    V+ KK    +D  A
Sbjct: 68  GGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRSVIDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 128 AVVILQNALE 137


>gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7]
 gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
 gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
 gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
 gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
          Length = 140

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A +D  +  A+    +   +V +    L  +I+ E +  F++GLP  
Sbjct: 4   IIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      +    AFV ++      +P  ++DER T+V A + +++  + +KKR  K  V
Sbjct: 61  MNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDKGLV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      ++LES K
Sbjct: 121 DEISAVIILQ------AYLESKK 137


>gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 148

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           LK    I +ID GTKR G+A++D  +  A     L   + T+    L  +  +E++   I
Sbjct: 10  LKAQMRILAIDYGTKRCGIAVTDELKLIASA---LATVETTELLDFLQQYCQSESVERII 66

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP   +G       +  +F+  + ++   +P   +DER T+  A  IL++    +KKR
Sbjct: 67  IGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKKR 126

Query: 133 IQK--VDSIAAALILQEVL 149
             K  +D I+A LILQ+ L
Sbjct: 127 QDKALLDRISATLILQDYL 145


>gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
           6506]
 gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
           6506]
          Length = 170

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     + R    +   +    +T   +   + GLP NMN
Sbjct: 11  GLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQVLVSGLPYNMN 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G +    + +   +    + +P  + DERLT++ A+Q+++   +S  +    +D  A
Sbjct: 71  GTLGFQARQVQKYASRLAS-ALALPLEYVDERLTSIQAEQLMLTEKISPSRNKALIDRKA 129

Query: 141 AALILQEVLD 150
           AA+ILQ+ LD
Sbjct: 130 AAIILQQWLD 139


>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
 gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
          Length = 143

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 17/146 (11%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
            +D+G+K +G+AISDP          L   K+ ++       ++   +   ++  F++GL
Sbjct: 5   GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
           P NM+GS G  V  ++ +   + + K  +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKE-KFDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
           + +D +AA LILQ      S+LE+++
Sbjct: 121 KVIDQMAAVLILQ------SYLEATR 140


>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
           IMS101]
 gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
          Length = 149

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KR+G+A  D     A     + R    +   +L   +    +   I+GLP +MN
Sbjct: 10  GLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSMN 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + +   +  + + +P  + DERLT+V A+++L   N+S  +    +D  A
Sbjct: 70  GSIGFQAKKVQRYAQRL-SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRKA 128

Query: 141 AALILQEVLD 150
           AALILQ+ LD
Sbjct: 129 AALILQQWLD 138


>gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
           M21/2]
          Length = 143

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
           I ++D G  R GLA  D          P+  L  R KV     E+   I  E I   +IG
Sbjct: 3   ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMI---LIG 59

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+EG R   +R      ++    +P   WDER TT +A  +L +      +R +
Sbjct: 60  LPLNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKE 118

Query: 135 KVDSIAAALILQEVL 149
            +DS++A +IL++ L
Sbjct: 119 ILDSVSATVILEDYL 133


>gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase
 gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 138

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 18/144 (12%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77
           I  +D+G++RIG+AISDP +  A P  F V     +     L  I  E+ I   +IG P+
Sbjct: 3   ILCLDIGSRRIGVAISDPLKIAAQP--FCVLDLQKEDLYSCLDKIFNEHQIEKIVIGYPV 60

Query: 78  NMNGSEGPRVHSTRAF--------VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           +       + H  +A         + + ++R+  V  + WDER +T + ++IL + NVS 
Sbjct: 61  S-------KFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSW 113

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
           +KR + VD +AA  ILQ  LD I+
Sbjct: 114 QKRKKVVDKLAAVYILQGYLDFIN 137


>gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
 gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
          Length = 139

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D G KR GLA++DP +  A+    LV    ++    L  ++  EN+   ++G P  
Sbjct: 4   ILSVDYGKKRTGLAVTDPLQIIANG---LVTVATSELFDFLKDYVQRENVECIVVGRPTQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
           +NG     +     FV+        +P  ++DER T+  AQQ ++   V +K R +    
Sbjct: 61  LNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRREDKGL 120

Query: 136 VDSIAAALILQEVL 149
           VD ++A +ILQ+ +
Sbjct: 121 VDEVSATIILQDYM 134


>gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
 gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
          Length = 140

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIG+A+SDP    A P   L  ++V   A    + +        + G P  
Sbjct: 3   VLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRPKT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G +GP+           I +   +P  F DERL++  A++IL    +S K    KVD 
Sbjct: 63  LAGEDGPQAQKITVQAEQ-IAKNCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKVDM 121

Query: 139 IAAALILQEVLD 150
           +AA+L LQ  LD
Sbjct: 122 VAASLFLQSWLD 133


>gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J]
 gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448]
          Length = 130

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 27  KRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNMNGSEG 84
           K  G AISD   + ++P   F   +    + +  ++F   E  I+  ++G PL + G   
Sbjct: 2   KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
           PR      F  +++ +   +  VF DERLTT  AQ  L+D+ +S KKR + +D +AA +I
Sbjct: 62  PRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120

Query: 145 LQEVLDRISFLESSKG 160
           L+       FL + KG
Sbjct: 121 LER------FLNTKKG 130


>gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
           prausnitzii SL3/3]
          Length = 143

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
           I ++D G  R GLA  D          P+  L  R KV     E+   I  E I   +IG
Sbjct: 3   ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMI---LIG 59

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+EG R   +R      ++    +P   WDER TT +A  +L +      +R +
Sbjct: 60  LPLNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKE 118

Query: 135 KVDSIAAALILQEVL 149
            +DS++A +IL++ L
Sbjct: 119 ILDSVSATVILEDYL 133


>gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
 gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
          Length = 153

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
            +D+G  R+G+A SDP    A P   L R +      V     EL + +        ++G
Sbjct: 11  GVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEAVEVVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+N+ G  GP     + +V  +++    VP    DER++TV A + L +  V  +++  
Sbjct: 71  LPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQRA 130

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 131 VVDQAAAVEILQSWLD 146


>gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus
           S26/3]
 gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase
 gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3]
          Length = 150

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
            +D G +RIGLA +      + P  F+   K  +   +LL  I  E  ++  ++G PL M
Sbjct: 12  GVDYGERRIGLAYAAYPLGISLPIGFIATGKTLEATAKLLVGIIQERRVSTVVLGNPLPM 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
              +   +      + +++     V  + WDERL++  A+++L  D  +SRKKR  K DS
Sbjct: 72  QKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDS 131

Query: 139 IAAALILQEVLDRISFLESS 158
           IAA LIL       SFLE S
Sbjct: 132 IAATLIL------TSFLEHS 145


>gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase
          Length = 171

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 17/151 (11%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75
            +D+GT RIGLA+SD G R A P   L R    K   +  ++ ++ +  +N I   ++GL
Sbjct: 20  GVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHIVEVVVGL 79

Query: 76  P--LNMNGSEGPRVHSTRAFVHNMIDRKVY------VPFVFWDERLTTVSAQQILIDMNV 127
           P  L  NGS+  +     AF    I R+++      V     DERLTTV A Q L    V
Sbjct: 80  PRDLKGNGSKSVKHAKDVAF---RIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGV 136

Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
           S KK  + VD  AA  ILQ  LD RI+ LE+
Sbjct: 137 SEKKGRRVVDQAAAVEILQSWLDARINVLEN 167


>gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120]
 gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC
           29413]
 gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase
 gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase
 gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120]
 gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413]
          Length = 151

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KR+G+A  D     A     + R    +   ++ + +    +   ++GLP +M+
Sbjct: 9   GLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSMD 68

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + F   +  + + +P  + DERLT+  A+Q+LI  NVS  +    +D  A
Sbjct: 69  GSLGFQARQVQKFTSRLA-KALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRKA 127

Query: 141 AALILQEVLD 150
           AALILQ+ LD
Sbjct: 128 AALILQQWLD 137


>gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis
           YCH46]
 gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC
           9343]
 gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase
 gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase
 gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46]
 gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC
           9343]
 gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R]
          Length = 138

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 13/138 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL FIT     E++   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTMQIIANGL-------TTVPTHELLDFITNYVKQESVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLD 150
           K  VD I+A +ILQ  L+
Sbjct: 117 KALVDEISATIILQSYLE 134


>gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074]
 gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 158

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L + +        ++GLP ++ 
Sbjct: 12  AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEPIEVVVGLPRSLK 71

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F   +      VP    DER++TV+A Q +    V  KK    +D  A
Sbjct: 72  GGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVRSKKGRAVIDQAA 131

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 132 AVVILQSALE 141


>gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 183

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 17/151 (11%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75
            +D+GT RIGLA+SD G R A P   L R    K   +  ++ ++ +  +N I   ++GL
Sbjct: 32  GVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHIVEVVVGL 91

Query: 76  P--LNMNGSEGPRVHSTRAFVHNMIDRKVY------VPFVFWDERLTTVSAQQILIDMNV 127
           P  L  NGS+  +     AF    I R+++      V     DERLTTV A Q L    V
Sbjct: 92  PRDLKGNGSKSVKHAKDVAF---RIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGV 148

Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
           S KK  + VD  AA  ILQ  LD RI+ LE+
Sbjct: 149 SEKKGRRVVDQAAAVEILQSWLDARINVLEN 179


>gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
 gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
          Length = 137

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           I SID G KR GLA++DP +  A+          T +  EL ++I T    E +   +IG
Sbjct: 3   ILSIDYGKKRTGLAVTDPLQIIAN-------GLATVSTHELFTYIETYIQKEQVERIVIG 55

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P+  NG     +     F +        +P  ++DER T+V A + +ID  V +K R +
Sbjct: 56  KPMQPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKE 115

Query: 135 K---VDSIAAALILQEVL 149
               VD I+A +ILQ+ L
Sbjct: 116 NKGLVDEISATIILQDYL 133


>gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1]
 gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase
 gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1]
          Length = 142

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 11/141 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I  +D+G+K IGLA S  G            +   +  + LL+ FI  ++   F+ G P 
Sbjct: 4   ILGLDVGSKTIGLA-SSTGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVFGYPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVP------FVFWDERLTTVSAQQILIDMNVSRKK 131
           NMNGS G R      F+   +   VY P       +  DER TT  A+ I+I+  +SR+K
Sbjct: 63  NMNGSIGERAEMVDYFIEGFM---VYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQK 119

Query: 132 RIQKVDSIAAALILQEVLDRI 152
           + +  D++AA LIL+  L++I
Sbjct: 120 QKENKDTLAAQLILETYLEKI 140


>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
           5692]
 gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
           5692]
          Length = 142

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
            ID G KR+GLA+SD       P   + R   T+ AL  ELL++I T  I A +IGLP +
Sbjct: 5   GIDFGLKRVGLALSDSQATVVTPLATVQRS--TRQALFEELLAYIETYAIEAVVIGLPYD 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G+        R F  ++  R++ +P  + DE LT+  A + L +  V R KR   +D 
Sbjct: 63  LEGTATLTTRQARNFGTSLA-RRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLDQ 121

Query: 139 IAAALILQEVL 149
            AA  IL+  L
Sbjct: 122 HAAVAILESFL 132


>gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
           11841]
 gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
           11841]
          Length = 141

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID G KR G+A++DP +  A+    +    V      ++S++  E++   ++G P  
Sbjct: 4   VLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVQQEHVERIVVGQPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG +   +    +FV  + +R   +P  F+DER T+V A Q ++   + +K R  K  V
Sbjct: 61  ANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNKALV 120

Query: 137 DSIAAALILQ 146
           D I+A +ILQ
Sbjct: 121 DEISATIILQ 130


>gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
 gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
          Length = 188

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLP 76
            +D+G+ R+G+A+SDP    A P   L R+ V++       EL   +   +    ++GLP
Sbjct: 33  GVDVGSVRVGVAVSDPDGLLAVPVTTL-RRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +++G EG  V   R +   +  R   VP    DERLTTV A + + +  +  + R   V
Sbjct: 92  RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151

Query: 137 DSIAAALILQEVLD 150
           D  AA  ILQ  LD
Sbjct: 152 DQEAAVQILQHHLD 165


>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 136

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID GTKR GLA++DP +  A     L      Q    L  +   E + AF+IGLP  
Sbjct: 3   ILSIDYGTKRTGLAVTDPLKLIASG---LTTVDTPQLLPFLEKYTAEEAVEAFVIGLPKR 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           +N  +       +  +  + +R   +    +DER T+  A Q +ID  + +K+R  K  +
Sbjct: 60  LNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKALI 119

Query: 137 DSIAAALILQEVLD 150
           D I+A LILQ+ L+
Sbjct: 120 DEISATLILQDFLN 133


>gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
 gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
          Length = 147

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
           +ID G  R+GLA++DP  R   P   L  +  T+ AL  ELL+ I+ + +   ++G P+ 
Sbjct: 6   AIDYGQARVGLAVTDPEARVVFPLRTLAWE--TRDALFHELLAVISDQAVTRIVVGYPMR 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G EG      R FV  +  R+  VP    DE  +T  A + L +   + K+ + +VD+
Sbjct: 64  AGGDEGLTGRQVRNFVSRLT-RRTTVPVELVDEAHSTEEAAERLREAGYAGKELLARVDA 122

Query: 139 IAAALILQEVL 149
            AAA+IL+  L
Sbjct: 123 QAAAVILERYL 133


>gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
           2338]
          Length = 158

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            ID+G  R+G+A+SDP    A P   L R       L  L+  +    +   ++G+P  +
Sbjct: 17  GIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTL 76

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G  GP   +  ++   + +R   VP V+ DERLTTV+A ++L    V  KK+   VD  
Sbjct: 77  AGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQA 136

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 137 AAVEILQAWLD 147


>gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
 gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
 gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
 gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
          Length = 141

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 7/141 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A+SD  +  A+    +   ++ Q    LL ++  E +   ++GLP  
Sbjct: 4   IIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      + +   FV ++  +   +P  + DER T+V A + +++  + +K R  K  V
Sbjct: 61  MNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLD--RISFL 155
           D I+A +ILQ  L+  R SFL
Sbjct: 121 DEISATIILQTYLENKRFSFL 141


>gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32]
 gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei
           U32]
          Length = 133

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 31  LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNMNGSEGPRVHS 89
           +A+SDP    A P   L R     T L+ L+ + TE+ +   I+GLP  +   +GP    
Sbjct: 1   MALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAEL 60

Query: 90  TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
             A+   +  R   VP    DERLTTV+A +IL    V  +K+   VD  AA  ILQ  +
Sbjct: 61  AIAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWI 120

Query: 150 DRISFLESSKG 160
           D  +   + +G
Sbjct: 121 DAAAAHRAREG 131


>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 199

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 1   MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VT 53
           M +L  E+L + L     K    +  +D+G+K +GLA+SD   R A P   L R K  + 
Sbjct: 13  MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72

Query: 54  QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111
             A +  + +   ++A  ++G P N+ G   P        V  +        + + +WDE
Sbjct: 73  LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132

Query: 112 RLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153
             T+   + +L  +N++ +   + + D  AA  ILQ  LD ++
Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175


>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
          Length = 548

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL-N 78
           +D+G K +GLAISDP    A P   L+RKK  +   A +  + +   +++  ++G P   
Sbjct: 405 LDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPFGK 464

Query: 79  MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +N  E   V +   F+  +   ++   V + +WDERL++ + + +L  +N+   +    +
Sbjct: 465 LNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTML 522

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQE LD
Sbjct: 523 DKLAAVVILQEYLD 536


>gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD]
 gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD]
          Length = 124

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 12/105 (11%)

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-----------YVPF 106
           E+L  I   N+   +IGLPL ++G+EG        +  N+I R             Y+P 
Sbjct: 13  EVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPE 72

Query: 107 VFW-DERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           V W DERLTTVSA + L+  ++S KK    VD  +A LILQ  LD
Sbjct: 73  VVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALD 117


>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 542

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL-N 78
           +D+G K +GLAISDP    A P   L+RKK  +   A +  + +   +++  ++G P   
Sbjct: 399 LDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVGYPFGK 458

Query: 79  MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +N  E   V +   F+  +   ++   V + +WDERL++ + + +L  +N+   +    +
Sbjct: 459 LNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTML 516

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQE LD
Sbjct: 517 DKLAAVVILQEYLD 530


>gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
 gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
 gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 139

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++D  +  A+    L      Q    +L ++  E +   I+G P  
Sbjct: 4   ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN  E   + +   FV+ +  +   +P  F DER T+V A Q ++D  + +K R  K  V
Sbjct: 61  MNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES K
Sbjct: 121 DEISATIILQ------SYLESKK 137


>gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
 gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase
 gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
          Length = 131

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D GTKR+GLAI D   +   P+  +  K+  +   E+   +    +   I+GLPL 
Sbjct: 3   VLAVDYGTKRVGLAIGDEELKIVSPKGTVSSKEAVKKIKEI---VEKSRVGKVIVGLPLT 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G EG R    + FV  + +       + WDER TT  A + L    +  KK+ +  D 
Sbjct: 60  PSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELKDV 117

Query: 139 IAAALILQEVLDRI 152
           I+A +IL+E L+ +
Sbjct: 118 ISAMIILEEYLNSV 131


>gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
 gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
          Length = 200

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77
            +D+G+ R+G+A SDP    A P   L R    +  +   EL   +   +    ++GLP 
Sbjct: 45  GVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVVGLPR 104

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++G EG  V   R +   +  R   VP    DERLTTV A + + +  +  + R + VD
Sbjct: 105 QLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRELVD 164

Query: 138 SIAAALILQEVLD 150
             AA  ILQ  LD
Sbjct: 165 QEAAVQILQHHLD 177


>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 187

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 1   MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VT 53
           M +L  E+L + L     K    +  +D+G+K +GLA+SD   R A P   L R K  + 
Sbjct: 1   MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60

Query: 54  QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111
             A +  + +   ++A  ++G P N+ G   P        V  +        + + +WDE
Sbjct: 61  LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120

Query: 112 RLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153
             T+   + +L  +N++ +   + + D  AA  ILQ  LD ++
Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163


>gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens
           XB1A]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T +  ELL+FI      E +   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTMQLIANGL-------TTVSTHELLNFIGEYMAKEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
           15272]
 gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
           15272]
          Length = 149

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D+G  RIG+A+ DP    A P   +           LL   +   +   ++GLPL+++G
Sbjct: 1   MDVGDVRIGVAMCDPDGMIATPVETVPAGPAAHA--RLLQIASEIEVVEIVVGLPLSLSG 58

Query: 82  SEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            EGP     RAFV     M DR    P    DERL+TV+A   L D   + +   + +D 
Sbjct: 59  REGPAAGKVRAFVQVLAAMSDR----PVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQ 114

Query: 139 IAAALILQEVLD 150
            AA +ILQ  LD
Sbjct: 115 AAAVVILQNALD 126


>gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
 gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
          Length = 135

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +A++D+G  RIGLA+ + G  +A  R +LVR+      L L +F   E +A  I+GLPL 
Sbjct: 3   VAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+  P   + R        R+  +     DER TT    Q L +     ++   K+D 
Sbjct: 63  TDGT--PSAQAARVLELVRALREAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKLDE 120

Query: 139 IAAALILQEVLDR 151
            AA  +L+  L+R
Sbjct: 121 AAAVALLESYLER 133


>gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase
 gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 161

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           ++D+G  RIGLA SDP    A P   + R       +  +  + TE + A  ++GLPL +
Sbjct: 8   AVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLAL 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G           F   + D    +P    DERL+TVSAQ  L       +K+   +D +
Sbjct: 68  SGRATASTDDAEGFARRLAD-ATEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQV 126

Query: 140 AAALILQEVLD 150
           AA +ILQ  L+
Sbjct: 127 AAVIILQHALE 137


>gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
           prausnitzii L2-6]
          Length = 143

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLV---RKKVTQTALELLSFITTENIAAFIIG 74
           I ++D G  R GLA  D       P  P +    R KV     E+   I  E I   +IG
Sbjct: 3   ILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELI---VIG 59

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+EG R   +R      ++    +P   WDER TT +A  +L +      KR  
Sbjct: 60  LPLNMDGTEGERARKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKS 118

Query: 135 KVDSIAAALILQEVL 149
            +DS++A +IL + +
Sbjct: 119 ILDSVSATVILDDYI 133


>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
 gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
 gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
 gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 178

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G+K +GLA+SD   R A P   L R K  ++  A + ++ ++  ++A F++G P N
Sbjct: 26  GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           + G   P     R  V  +        + + +WDE  T+   + +L  + +      + +
Sbjct: 86  LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKCVEALLHPLKLHDPVETKTM 145

Query: 137 -DSIAAALILQEVLDRIS 153
            D  AA  ILQ  LD ++
Sbjct: 146 TDKFAAVCILQRYLDNMN 163


>gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
 gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
          Length = 136

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA+ + G  +A  R +LVRK +      L +F   E    F++GLPL 
Sbjct: 3   VVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G    +    +A V  M +R + +  +  DER TT   Q  L       ++   K+D 
Sbjct: 63  TDGRPSAQAERVQALVEAMRERGMQLELL--DERYTTKLGQNRLKHAPKRIRQEKGKLDE 120

Query: 139 IAAALILQEVLDRIS 153
            AA  +L+  L R+ 
Sbjct: 121 AAAIALLESYLARVG 135


>gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
           acid binding / recombinase [Arabidopsis thaliana]
 gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
 gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 170

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G K +GLAISDP    A P   L+RKK  +   A +  + +   +++  ++G P  
Sbjct: 26  GLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPFG 85

Query: 79  -MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            +N  E   V +   F+  +   ++   V + +WDERL++ + + +L  +N+   +    
Sbjct: 86  KLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTM 143

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQE LD
Sbjct: 144 LDKLAAVVILQEYLD 158


>gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase
 gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 152

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 19/142 (13%)

Query: 19  IASIDLGTKRIGLAISDPGRRFA------HPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           I + D GTKRIG+A +DP +  A      HP+  +V          L  ++ TE + AF+
Sbjct: 4   ILAFDFGTKRIGIASTDPMQIIANALDTVHPKDVVVY---------LKKYLNTEPVEAFV 54

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +GLP  +   E     + +AF+ N+I +     P    DER T+  A   ++   VS+K 
Sbjct: 55  VGLPRTLQNEESSNAANVKAFI-NLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKG 113

Query: 132 RIQK--VDSIAAALILQEVLDR 151
           R  K  +D I+A +ILQ  +++
Sbjct: 114 RRDKATIDKISATIILQSFMEQ 135


>gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 139

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++D  +  A+    L      Q    +L ++  E +   I+G P  
Sbjct: 4   ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN  E   + +   FV+ +  +   +P  F DER T+V A Q ++D  + +K R  K  V
Sbjct: 61  MNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES K
Sbjct: 121 DEISATIILQ------SYLESKK 137


>gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
 gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase
 gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
          Length = 151

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
           N     +DLG K +G+A+S  G    + +  F    K  +    L   I    I   ++G
Sbjct: 6   NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLG 65

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G +   +  F   + ++   V  + WDERL+TV A Q+L   N  + K +Q
Sbjct: 66  YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQ 125

Query: 135 KVDSIAAALILQEVLDRISF 154
             D IAA +ILQ  LD I  
Sbjct: 126 MKDEIAATIILQNYLDYIKL 145


>gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
 gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
          Length = 139

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 13/138 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT----TENIAAFIIG 74
           I +ID G KR G+A++DP +  A+          T    +L+ F+T     E++   IIG
Sbjct: 4   ILAIDYGRKRTGIAVTDPMQIIANGL-------TTVRTHDLMDFLTDYTQKESVEKIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  M+ +    +     FV N   +   +P  + DER T+V AQ+ +I+  + +K R  
Sbjct: 57  LPKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLD 150
           K  VD ++A +ILQ  L+
Sbjct: 117 KALVDEVSATIILQTYLE 134


>gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
 gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
 gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
 gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
          Length = 141

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 13/148 (8%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENI 68
           + P   I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +
Sbjct: 1   MYPMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYMAKEPV 53

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              IIGLP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + 
Sbjct: 54  ERIIIGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLK 113

Query: 129 RKKRIQK--VDSIAAALILQEVLDRISF 154
           +K R  K  VD I+A +ILQ  L+   F
Sbjct: 114 KKDRQNKALVDEISATIILQTYLESKRF 141


>gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae
           GPIC]
 gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase
 gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae
           GPIC]
          Length = 163

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ID G +RIGLA +      + P   +     V  TA  L + I   +++  ++G P+ M
Sbjct: 14  GIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVVLGNPIPM 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
              +   +      + ++I     V  + WDERL++  A+++L  D  +SRKKR  K D+
Sbjct: 74  QKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDT 133

Query: 139 IAAALILQEVLDRISFLESS 158
           IAA LIL       SFLESS
Sbjct: 134 IAATLIL------TSFLESS 147


>gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC
           8482]
 gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510]
 gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
 gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase
 gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482]
 gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510]
 gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
          Length = 139

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++D  +  A+    L      Q    +L ++  E +   I+G P  
Sbjct: 4   ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN  E   + +   FV+ +  +   +P  F DER T+V A Q ++D  + +K R  K  V
Sbjct: 61  MNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES K
Sbjct: 121 DEISATIILQ------SYLESKK 137


>gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
 gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
          Length = 140

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           I SID G KR GLA++DP +        +     T    EL  F+ T    E +   +IG
Sbjct: 6   ILSIDYGKKRTGLAVTDPLQ-------MICGGLATVPTSELFKFLQTYMEKEPVERIVIG 58

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P   NG     +   + FV+       +VP  F+DER T++ A + ++D  + +K R  
Sbjct: 59  EPKQPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRD 118

Query: 135 K--VDSIAAALILQEVLDRI 152
           K  VD I+A +ILQ  L+ I
Sbjct: 119 KALVDEISATIILQSYLESI 138


>gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
           18228]
 gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
           18228]
          Length = 142

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++DP +  A+    L      Q    LL ++T E++   I+G P  
Sbjct: 4   IIAIDYGRKRTGIAVTDPMQIIANG---LTTVPTHQLMDFLLKYVTQESVERIIVGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN  +   + +   F++ +  +   +P    DER T+V A Q ++   + +K R  K  V
Sbjct: 61  MNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLD 150
           D I+A +ILQ  L+
Sbjct: 121 DEISATIILQSYLE 134


>gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12]
 gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase
 gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 139

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID G K +GLAISDP R  A        K        L   +    +   ++G P++
Sbjct: 3   VLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYPIS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G E  R    R  +  +I+  + +P  F DERLTT+ A+++L++ ++ RKKR    + 
Sbjct: 63  LRGHENERTQKVR-HIAELIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLKNK 121

Query: 139 IAAALILQEVLDRISF 154
            AA +ILQ+ LD  S 
Sbjct: 122 QAAVIILQKYLDSSSL 137


>gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp.
           SA3_actG]
 gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp.
           SA3_actF]
          Length = 154

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      + + +        ++GLP ++ 
Sbjct: 8   AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      RAF   +      VP    DER+TTV+A Q L    V+ KK    +D  A
Sbjct: 68  GGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 128 AVIILQTALE 137


>gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM
           17565]
 gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM
           17565]
          Length = 141

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 13/146 (8%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAA 70
           P   I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +  
Sbjct: 3   PMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGDYIAKEPVER 55

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            IIGLP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K
Sbjct: 56  IIIGLPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKK 115

Query: 131 KRIQK--VDSIAAALILQEVLDRISF 154
            R  K  VD I+A +ILQ  L+   F
Sbjct: 116 DRQNKALVDEISATIILQTYLESKRF 141


>gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 161

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D G  RIG+A SDP    A P   + R K     + LL  +        ++G P +++
Sbjct: 8   AVDPGNARIGVAASDPSGMLASPVETIRRGKGDTQRIALL--VLERQAREVVVGYPASLS 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRK------KRI 133
           G EGP   S R F   +      VP    DERLTTV+AQ Q+L   + + K       R 
Sbjct: 66  GEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAKGGRARR 125

Query: 134 QKVDSIAAALILQEVLDR 151
             +D  AA ++LQ  LD+
Sbjct: 126 SVIDQAAATVLLQSALDQ 143


>gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
 gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
          Length = 139

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++DP R  A+    L     ++    L+++I +E +   +IG P+ 
Sbjct: 4   ILAIDYGKKRTGIAVTDPLRIIANG---LATVPTSELYDYLVAYIRSEAVDKIVIGKPIQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
            NG           F +     +  +P  F+DER T+V A Q +I   V +K R +    
Sbjct: 61  ANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRREDKGL 120

Query: 136 VDSIAAALILQEVL 149
           VD I+A +ILQ+ +
Sbjct: 121 VDEISATIILQDFM 134


>gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
           bacterium DG1235]
 gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
           bacterium DG1235]
          Length = 149

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +D G +R+G+A  D  G   A P   +V+    +    L+          F+ G P NM
Sbjct: 5   GVDYGERRVGVAFGDDIG--VATPLQAIVKATEEERIQALVDLARERRATDFVFGYPYNM 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NGS G +     AF+  ++ + + +P    DERLT+V A +          +R  K+DS+
Sbjct: 63  NGSVGFKAKEVDAFIDKLL-KAIDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKIDSV 121

Query: 140 AAALILQEVLDR 151
           AA+LILQ+ L++
Sbjct: 122 AASLILQDYLNQ 133


>gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC
           73102]
 gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102]
          Length = 158

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP      +D G KRIG+A  D     A     + R    Q   ++   +    +   ++
Sbjct: 8   KPFISALGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVM 67

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +M+GS G +    + F   +  + + +P  + DERLT+  A+Q+LI  N S  +  
Sbjct: 68  GLPYSMDGSIGFQARQVQKFTTRL-SKALKLPVEYVDERLTSFQAEQLLIAENRSPSRHK 126

Query: 134 QKVDSIAAALILQEVLD 150
             +D  AAALILQ+ LD
Sbjct: 127 GLIDRKAAALILQQWLD 143


>gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
          Length = 151

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
           N     +DLG K +G+A+S  G      +  F    K  +    L   I+   I   ++G
Sbjct: 6   NNASLGLDLGEKTLGIALSQTGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLG 65

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G +   +  F   + ++   V  + WDERL+TV A Q+L   N  + + +Q
Sbjct: 66  YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQ 125

Query: 135 KVDSIAAALILQEVLDRISF 154
             D IAA +ILQ  LD I  
Sbjct: 126 MKDEIAATIILQNYLDYIKL 145


>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 143

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D+G K +G+A+SDP    A P   L R      A  ++  +   + A  +IGLP  
Sbjct: 5   VIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLPRL 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--QKV 136
           +NG  G +    + F   +      VP +F DER +T SA+ I+      RK     ++ 
Sbjct: 65  LNGVVGTQAERVQYFARRLAS-LTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRERD 123

Query: 137 DSIAAALILQEVLD 150
           D++AAA+ILQ+ LD
Sbjct: 124 DAVAAAVILQDWLD 137


>gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
 gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
          Length = 139

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++DP +  A     L      Q    LL ++  E +   IIG P  
Sbjct: 4   ILAIDYGKKRTGIAVTDPMQVIASG---LTTVPTHQLMDFLLGYVRQEAVERIIIGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN  +   +     F++ +  +   +P   +DER T+V A Q ++   + +K R  K  V
Sbjct: 61  MNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           D I+A +ILQ      S+LE+ +G
Sbjct: 121 DEISATIILQ------SYLEAKRG 138


>gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1]
 gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
 gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
 gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase
 gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
 gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
 gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
          Length = 133

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           +G K IG A+SDP R  A P   L R   T+T   + S + T      IIGLP+++NG+ 
Sbjct: 1   MGDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTI 60

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
           GP+    ++F   ++ R + +  ++ DER +T  A++ + D    +  +  + D+ AAA+
Sbjct: 61  GPQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117

Query: 144 ILQEVLDRIS 153
           ILQ+ LD  +
Sbjct: 118 ILQDYLDETN 127


>gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
           45221]
 gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
           45221]
          Length = 153

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ID G KRIGLA +D  G     P    V KK     +E +  I    +   ++G PLNM
Sbjct: 5   GIDWGEKRIGLAFADEVGIALPLPAAVAVSKKERMRHIEQM--IQERRVRELVVGYPLNM 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +     AF+  + +++  +P    DERL++ S +Q L        ++  ++DS 
Sbjct: 63  DGSVGFKAKEVDAFIEEL-EKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121

Query: 140 AAALILQEVLD 150
           AAALILQ+ ++
Sbjct: 122 AAALILQDFIE 132


>gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
           7335]
 gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
           7335]
          Length = 144

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG KRIG+A  D     A     L +       + L + I   ++   ++GLP  M+
Sbjct: 6   GLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G +    + F H +  + + +P  F DERLT+  A+Q+L+    S     + +D  A
Sbjct: 66  GQIGFQAKKIQKFAHRL-SKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRKA 124

Query: 141 AALILQEVLD 150
           AA+ILQ+ LD
Sbjct: 125 AAIILQQWLD 134


>gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
 gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
 gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL-SFITTENIAAFIIGLP 76
           I ++DLG+K  G AISD  R  + P   F  ++   +  +E L  +     I   +IG P
Sbjct: 4   IIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLIGYP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+M  ++         FV N+      +P    DER TT  A  I+I+  +SR+KR +  
Sbjct: 64  LSMQLNQTKSSKRVDYFV-NLFKTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRKKNK 122

Query: 137 DSIAAALILQEVLDR 151
           D +AA LIL + L++
Sbjct: 123 DKLAAQLILDDYLNQ 137


>gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5]
 gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5]
          Length = 153

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
            +D+G  R+G+A  DP    A P   L R        V     EL+           ++G
Sbjct: 11  GVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+N+ G  GP   +  A+   + D    +P    DER++TV A + L +  V  K++  
Sbjct: 71  LPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRA 130

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 131 VVDQAAAVEILQSWLD 146


>gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
           27029]
 gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
           27029]
          Length = 153

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
            +D+G  R+G+A  DP    A P   L R        V     EL+           ++G
Sbjct: 11  GVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+N+ G  GP   +  A+   + D    +P    DER++TV A + L +  V  K++  
Sbjct: 71  LPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRA 130

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 131 VVDQAAAVEILQSWLD 146


>gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22]
 gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYMAKEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
 gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++DP +  A+    L      +    LL ++  E +   ++G P  
Sbjct: 4   ILAIDYGRKRTGIAVTDPMQIIANG---LTTVPTHELMDFLLKYVAQEKVERIVVGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN  +   +   + FV  +  +   +P    DER T+V A Q ++D  + +K R  K  V
Sbjct: 61  MNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES +
Sbjct: 121 DEISATIILQ------SYLESRR 137


>gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
 gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTLQLIANGL-------TTVPTHELLNFIGEYVAKEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL
           15998]
 gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL
           11379]
 gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 157

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 58/130 (44%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        I+GLP ++ 
Sbjct: 11  AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILGLPRSLG 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F          VP    DER+TTV+A Q +    V  KK    +D  A
Sbjct: 71  GGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 130

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 131 AVVILQNALE 140


>gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 169

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLP 76
           +  +D+G K +GLA+SD   + A P   L+RKK  +   A +  S I+  ++A FI+G P
Sbjct: 24  LLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYP 83

Query: 77  LNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            N   S  P   + + F+ ++    +   V + +WDE  T+ + + +L  +N+   +   
Sbjct: 84  FNRQRSS-PTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKPLNLHPVQSKT 142

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D  AA  ILQ  LD ++
Sbjct: 143 ILDKFAAVGILQGYLDHVN 161


>gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1]
          Length = 142

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+G  R+G+A+ DP    A P   + R       +  ++ +  E ++   ++GLP N+
Sbjct: 10  GVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVVLGLPRNL 69

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G +GP   + R F  + +   + VP    DER+TTV A + L    V  +K+   VD  
Sbjct: 70  RGEDGPAARAAREFA-DALQAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQRSVVDQA 128

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LD+
Sbjct: 129 AAVQILQGWLDQ 140


>gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2]
 gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
 gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
 gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTMQLIANGL-------TTVPTHELLNFIGEYIAKEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 141

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A+SD  +  A+    +   ++ Q    LL ++  E +   ++G P  
Sbjct: 4   IIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGFPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      + +   FV ++  +   +P  + DER T+V A + +++  + +K R  K  V
Sbjct: 61  MNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLD--RISFL 155
           D I+A +ILQ  L+  R SFL
Sbjct: 121 DEISATIILQTYLENKRFSFL 141


>gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase
 gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTLQLIAN-------GLTTVPTHELLNFIGGYVAKEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
 gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   IIG
Sbjct: 4   IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYIAKEPVERIIIG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_33]
 gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_33]
          Length = 147

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
           ++D+G  RIG+A SD     A P   + RKKV   +++ ++ I  EN    I+ G+P ++
Sbjct: 6   ALDIGDVRIGVAKSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
           +G E  +    R ++  +      +  +  DER +TV A  IL ++N +    K+++  V
Sbjct: 64  DGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121

Query: 137 DSIAAALILQEVLD--RISFLESSK 159
           D +AA++ILQ  LD  ++ FLE  K
Sbjct: 122 DKVAASIILQTYLDMKKLKFLEEGK 146


>gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
 gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
          Length = 140

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  R G+A+SD   R A P   L   +V   A      +        + G PL + 
Sbjct: 5   AIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTLA 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  GP+    RA     I     +P  F DER+++  A++IL +   + ++   K+D IA
Sbjct: 65  GELGPQAERIRAEAEA-IGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMIA 123

Query: 141 AALILQEVLDR 151
           A+L LQ  LDR
Sbjct: 124 ASLFLQTWLDR 134


>gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
 gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
          Length = 135

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ------TALELLSFITTENIAAFI 72
           +   D GTK IG+A+   G+        L   K         T  +LL     E +   +
Sbjct: 3   VVGFDFGTKSIGVAV---GQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERV---V 56

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+G+E P     + F  N I  +  VP VF DERLT+ +A++ L + +  R   
Sbjct: 57  VGLPLNMDGTEQPLTQRAKKF-GNRIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLE 115

Query: 133 IQKVDSIAAALILQEVL 149
             KVDS AA LI+++ L
Sbjct: 116 KGKVDSAAALLIVEDYL 132


>gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 191

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
           I ++D G  R GLA  D          P+  L  R KV     E+   I  E I   +IG
Sbjct: 51  ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIGAELI---VIG 107

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+EG R   +R      ++    +P   WDER TT +A  IL +      KR +
Sbjct: 108 LPLNMDGTEGERAIKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADILDESGTFGTKRKE 166

Query: 135 KVDSIAAALILQEVL 149
            +DS++A +IL + L
Sbjct: 167 ILDSVSATVILDDYL 181


>gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23]
 gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23]
          Length = 137

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G KR GLA++DP +  A     L     ++    L ++I  E +   +IG P  
Sbjct: 4   ILSIDYGKKRTGLAVTDPLQIIAGG---LATVATSELFDFLKAYIAREQVEMIVIGEPRQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG     +   + FV+        VP  ++DER T+V A Q ++D  + +K R  K  V
Sbjct: 61  PNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNKGLV 120

Query: 137 DSIAAALILQEVL 149
           D I+A +IL++ +
Sbjct: 121 DEISATIILEDFM 133


>gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
           XylebKG-1]
          Length = 154

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 8   AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLGLPRSLG 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F          VP    DER+TTV+A Q +    V  KK    +D  A
Sbjct: 68  GGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 127

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 128 AVVILQNALE 137


>gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 145

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GTK IG+AI       A P      K  T   +++   ++       ++G PLN
Sbjct: 6   IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P   S R F H +  R+  +  VF DERL+T  A+  L D    +      VD+
Sbjct: 66  MDGTEQPITESARQFGHALY-RRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124

Query: 139 IAAALILQ 146
            +A +IL+
Sbjct: 125 TSAVIILE 132


>gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 161

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A  DP    A P   +  + V      L   +        ++GLP ++ 
Sbjct: 15  AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLGLPRSLG 74

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R F          VP    DER+TTV+A Q +    V  KK    +D  A
Sbjct: 75  GGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 134

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 135 AVVILQNALE 144


>gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
 gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
          Length = 156

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 2   SILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
           SI     L  + KPN  + +   D GT RIG+AI       A P   L  K+      E+
Sbjct: 4   SISTGTSLDDNQKPNTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEI 63

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              +      AF++GLPL+M+GSE       R F   +  R   +P+   DERL++  A+
Sbjct: 64  TRIVEEWKPDAFVVGLPLDMDGSENEMCQRARKFAKRLHGR-FNLPYHMMDERLSSYEAK 122

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQ 146
             +I    +R  +   VD +AA +IL+
Sbjct: 123 GQVIARGGNRNFKENSVDGLAAQMILE 149


>gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 132

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR+GLAI D     A P+  L         +E    + ++ +   ++GLPL 
Sbjct: 3   IIAIDFGTKRVGLAIGDTDLGIAVPKGVLRNDANLLDRIE--DIVRSKGVKKVVVGLPLT 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G EG R    R F   +  R   V    WDER +T+ A+  L D+   R++ +  +D+
Sbjct: 61  PSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRDLPPRRRREV--LDA 118

Query: 139 IAAALILQEVL 149
           I+A +IL+E L
Sbjct: 119 ISAQIILEEYL 129


>gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi]
 gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase
 gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi]
          Length = 155

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ++ +KS+  ++ I  +D+G K+IG+A SD  +  A       RK +++  L  L  I  E
Sbjct: 7   DEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKD-LGYLHRIFKE 65

Query: 67  NIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123
           N A + +IG+PLN++  E     +   F + +I +K  V     DE L+T  A   L   
Sbjct: 66  NEAGSMVIGIPLNIDEQETKWCKTIIQFANKII-KKYKVNTYLQDESLSTSIATHTLKIT 124

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            +++++ K+I   D I+A +ILQ  LD+I+ ++
Sbjct: 125 GISITKSKKID--DKISACIILQRTLDKINTIK 155


>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
 gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
          Length = 147

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
           ++D+G  RIG+A SD     A P   + RKKV   +++ ++ I  EN    I+ G+P ++
Sbjct: 6   ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
           +G E  +    R ++  +      +  +  DER +TV A  IL ++N +    K+++  V
Sbjct: 64  DGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121

Query: 137 DSIAAALILQEVLD--RISFLESSK 159
           D +AA++ILQ  LD  ++ FLE  K
Sbjct: 122 DKVAASIILQTYLDMKKLKFLEEGK 146


>gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
           MED92]
 gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
           MED92]
          Length = 158

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           NQ +A  D GT+RIG+A        A P   L+ K       E+   I+     A ++G+
Sbjct: 6   NQALA-FDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGI 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLN +G+     H  R F  N +  +   P    DERL+T  A++I      S   R + 
Sbjct: 65  PLNADGTISDMAHRARKFA-NRLHERYKTPCFLMDERLSTAEAKEIHFASGGSDNFREES 123

Query: 136 VDSIAAALILQEVLD 150
           VD IAA LIL+   +
Sbjct: 124 VDGIAAQLILESWFN 138


>gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
 gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
          Length = 154

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + ++D+G +RIG+A  + G  FA  R  + R+ +      + +    E  A  ++GL
Sbjct: 2   SEVVLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  + G +  +    RAF   +  +   +  VF DER T+  A Q L+   + R +R +K
Sbjct: 62  PRRLRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEK 119

Query: 136 --VDSIAAALILQEVL 149
             VD  AA LIL+  L
Sbjct: 120 GRVDEGAAVLILETYL 135


>gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
 gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
          Length = 138

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I SID G KR G+A++DP +  A+    +     T T  + L  ++  E +   +IG P+
Sbjct: 3   ILSIDYGKKRTGIAVTDPLQIIANGLATVS----TSTLFDYLKDYVAREEVERIVIGKPM 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +     FV+        +P  ++DER T+V A + ++   + +K R  K  
Sbjct: 59  QTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKAL 118

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           VD I+A +ILQ      S++ES +
Sbjct: 119 VDEISATIILQ------SYMESKR 136


>gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           D11]
 gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D11]
 gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D11]
          Length = 147

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 8/144 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SD     A P   + RKKV ++A  +       +    ++G+P +++
Sbjct: 6   ALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGIPKSLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137
           G E  +    R ++  +      +  +  DER +TV A  IL ++N +    K+++  VD
Sbjct: 65  GEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--VD 122

Query: 138 SIAAALILQEVLD--RISFLESSK 159
            +AA++ILQ  LD  ++ FLE  K
Sbjct: 123 KVAASIILQTYLDMKKLKFLEEGK 146


>gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM
           17132]
 gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM
           17132]
          Length = 140

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G  R GLA++DP +  A     L   K  Q    L  +I  E + A ++GLPL+
Sbjct: 4   ILAIDYGKVRTGLAVTDPLQIIATA---LETVKTDQLINYLERYIQNEEVDALVLGLPLS 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           +   + P     R+F   + D+   +P  F DER T+  A   LI   V +K R  K   
Sbjct: 61  LRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVKGNT 120

Query: 137 DSIAAALILQEVL 149
           D I+A +ILQ  L
Sbjct: 121 DLISAVIILQSYL 133


>gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella
           denticola F0289]
 gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289]
          Length = 139

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP R  A+    +     T    + L+ +I TE +   +IG P+
Sbjct: 4   ILAIDYGKKRTGLAVTDPLRIIANGLATVA----TSGLFDFLTQYIGTETVEQLVIGRPV 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             +G     +     FV+        +P  ++DER T+V A Q +I   V +K R +   
Sbjct: 60  QPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRRENKG 119

Query: 136 -VDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134


>gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
 gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
          Length = 141

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 17/150 (11%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENI 68
           + P   I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +
Sbjct: 1   MYPMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYIAKEPV 53

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMN 126
              IIGLP  MN      + +   FV ++  +K Y  +P  + DER T+V A + +++  
Sbjct: 54  ERIIIGLPKQMNNEVSENMKNIEPFVRSL--KKCYPDLPVEYVDERFTSVLAHRTMLEAG 111

Query: 127 VSRKKRIQK--VDSIAAALILQEVLDRISF 154
           + +K R  K  VD I+A +ILQ  L+   F
Sbjct: 112 LKKKDRQNKALVDEISATIILQTYLESKRF 141


>gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria
           bacterium BBFL7]
 gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria
           bacterium BBFL7]
          Length = 139

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++DP +  A     L      + ++ L  ++ TE++   +IG P  
Sbjct: 4   ILAIDYGKKRTGIAVTDPMQIIASG---LTTVATHELSVFLEKYLNTEDVETIVIGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+ ++        AF   + ++   +     DER T+  A Q +ID  +S+ KR  K  V
Sbjct: 61  MDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNKALV 120

Query: 137 DSIAAALILQEVLDRIS 153
           D IAA +ILQ  +DR S
Sbjct: 121 DEIAATIILQTYMDRKS 137


>gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales
           bacterium ALC-1]
          Length = 137

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR GLA++D  +  A     +  K++      L +++ TE++  F++GLP  
Sbjct: 4   ILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPF---LKNYVDTESVEKFVVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+ +        + F+  +     ++P    DER T+  A Q +ID  + +K+R  K  +
Sbjct: 61  MDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNKALI 120

Query: 137 DSIAAALILQEVL 149
           D I+A LILQ  L
Sbjct: 121 DEISATLILQSYL 133


>gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 142

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 66/138 (47%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++P     +ID+G+ R+G+A+ DP    A P   + R K       ++  IT  +    +
Sbjct: 2   IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP  + G EGP V + R F   +      V   F+DERLTTV+A   L    V  K  
Sbjct: 62  IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121

Query: 133 IQKVDSIAAALILQEVLD 150
              +D  AA  ILQ  LD
Sbjct: 122 RAVIDQAAAVAILQGWLD 139


>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
 gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
          Length = 143

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
           +ID GTKR G+A++DP +  A     +     T T L  L  +   E + AF+IG P  M
Sbjct: 5   AIDYGTKRTGIAVTDPLQIIASGLCTVE----TSTLLAFLKQYTAEEAVEAFVIGQPKRM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
           N  +       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  +D
Sbjct: 61  NSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALID 120

Query: 138 SIAAALILQEVL 149
            I+A +ILQE L
Sbjct: 121 EISATIILQEFL 132


>gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
           44963]
 gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
           44963]
          Length = 162

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
           ++D+G  RIG+A  D     A P   + V +   QT   +   I   +    +IGLP+++
Sbjct: 8   ALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIGLPVSL 67

Query: 80  NG---SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133
           +G   ++G R+    AFV  +    + VP  FWDERL+TV A+++       + K     
Sbjct: 68  DGQIHAQGERI---MAFVERL-KAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTGGR 123

Query: 134 -----------QKVDSIAAALILQEVLD 150
                       ++D++AAA+ LQE LD
Sbjct: 124 QHSQGKRRRPGHEIDALAAAVFLQEYLD 151


>gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU144]
          Length = 123

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
             I  +D+G+K +G+AISD     A     L R    Q  L   +L+  I    +   +I
Sbjct: 4   HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           GLP NMN S G R  ++  +   + +    +  V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKR 121


>gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
           18C-A]
 gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
           18C-A]
          Length = 139

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP R  A+    +     T    + L+ +I TE +   +IG P+
Sbjct: 4   ILAIDYGKKRTGLAVTDPLRIIANGLATVA----TSGLFDFLTQYIETETVERLVIGRPV 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             +G     +     FV+        +P  ++DER T+V A Q +I   V +K R +   
Sbjct: 60  QPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRRENKG 119

Query: 136 -VDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134


>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
 gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
          Length = 170

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 10/156 (6%)

Query: 5   LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61
           L  +L+K+   NQ     +D+G K +GLA+SDP  + A P   L+RKK  +   A +  S
Sbjct: 9   LFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATDFQS 68

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQ 119
            I+  ++  FI+G P +      P     + FV ++    +   V F +WDE  T+ + +
Sbjct: 69  LISELSLGGFIVGYPFDRQRG-APDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSKNVE 127

Query: 120 QIL--IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            ++  +D++    K I  +D  AA  ILQ  LD ++
Sbjct: 128 LLVKPLDLHPVHAKSI--MDKFAAVGILQGYLDYVN 161


>gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
 gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
          Length = 152

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
            +D+G  RIG++ SDP    A P   + R++      V +  +E+ + +        ++G
Sbjct: 11  GVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALVVEHEAVEVVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+N+ G  GP     +A+   + +    VP    DER++TV A + L +  V  KK+  
Sbjct: 71  LPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLAERGVRGKKQRA 130

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 131 VVDQAAAVEILQSWLD 146


>gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           AR39]
 gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
          Length = 154

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 14  KPNQPIA--SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAA 70
           KP+   A   ID G KRIGLA +        P   +   K +  +A  L   I + NI  
Sbjct: 6   KPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITC 65

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
            ++G PL M       +    + +   + +   V  + WDERL++V A+++L  D  +SR
Sbjct: 66  VVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSR 125

Query: 130 KKRIQKVDSIAAALILQEVLDRI 152
           K R  K DS+AA LIL   LD +
Sbjct: 126 KDRKGKTDSLAATLILTSFLDSL 148


>gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           CWL029]
 gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           J138]
 gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           TW-183]
 gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase
 gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183]
 gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae
           LPCoLN]
          Length = 151

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 14  KPNQPIA--SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAA 70
           KP+   A   ID G KRIGLA +        P   +   K +  +A  L   I + NI  
Sbjct: 3   KPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITC 62

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
            ++G PL M       +    + +   + +   V  + WDERL++V A+++L  D  +SR
Sbjct: 63  VVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSR 122

Query: 130 KKRIQKVDSIAAALILQEVLDRI 152
           K R  K DS+AA LIL   LD +
Sbjct: 123 KDRKGKTDSLAATLILTSFLDSL 145


>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
          Length = 224

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G K +GLA+SD   + A P   L+RKK  +   A +  S I+  ++A FI+G P N
Sbjct: 81  GLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYPFN 140

Query: 79  MNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              S  P   + + F+ ++    +   V + +WDE  T+ + + +L  +N+   +    +
Sbjct: 141 RQRSS-PTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKPLNLHPVQSKTIL 199

Query: 137 DSIAAALILQEVLDRIS 153
           D  AA  ILQ  LD ++
Sbjct: 200 DKFAAVGILQGYLDHVN 216


>gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
 gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
          Length = 175

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
            +D+G  R+G ++SDP    A P   L R     +   +L   +   ++    +GLP  M
Sbjct: 2   GVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKTM 61

Query: 80  NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQ 134
            G E       R + H +   +D +       W  DERLTTVSA + L +  VS +    
Sbjct: 62  RGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFKT 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD +AA  ILQ  LD +   ++  G
Sbjct: 122 MVDQVAAVNILQYSLDALKAGQAVAG 147


>gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
           BAL38]
 gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
           BAL38]
          Length = 137

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID G KR G+A++D  +  A    F +    ++TA+  L  + + E + + IIG P 
Sbjct: 4   ILAIDYGIKRTGIAVTDEMQMIA----FGLTTIPSETAITFLKDYFSKEKVESVIIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MNG          AFV    +    +P    DER T+  A Q +ID  +++K+R  K  
Sbjct: 60  QMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKAL 119

Query: 136 VDSIAAALILQEVL 149
           VD IAA +ILQ+ L
Sbjct: 120 VDEIAATIILQDYL 133


>gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
 gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
          Length = 184

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
            +D+G  R+G ++SDP    A P   L R     +   +L   +   ++    +GLP  M
Sbjct: 11  GVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKTM 70

Query: 80  NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQ 134
            G E       R + H +   +D +       W  DERLTTVSA + L +  VS +    
Sbjct: 71  RGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFKT 130

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD +AA  ILQ  LD +   ++  G
Sbjct: 131 MVDQVAAVNILQYSLDALKAGQAVAG 156


>gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
 gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase
 gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase
 gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
 gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
          Length = 142

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 1/129 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID G +R G+A++D G R A PR  +         +ELL  +  E   AF++GLP    
Sbjct: 5   GIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLPG 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E       R FV  +  R+  +P  F  E L++  A+  L D  +  ++    VD  A
Sbjct: 65  GEETLTTRQVRNFVERL-KRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVDQQA 123

Query: 141 AALILQEVL 149
           A  IL+  L
Sbjct: 124 AVRILESFL 132


>gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 135

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR G+A++D  +  A     L   + T+    L  +   E +   I+GLP  
Sbjct: 3   ILAIDYGTKRCGIAVTDELKLIASA---LATVETTELLDFLEKYCQAEQVERIIVGLPKQ 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           ++G       +   F+  + ++   +P   +DER T+  A  IL+     +KKR  K  +
Sbjct: 60  VSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKALL 119

Query: 137 DSIAAALILQEVL 149
           D I+A LILQ+ L
Sbjct: 120 DRISATLILQDYL 132


>gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
 gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase
 gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 148

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENI 68
           + S+K  +    +D G KRIGLA +        P   +     +  TA  L++ I    +
Sbjct: 1   MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
              + G PL M  S    V S    +  ++     +  + WDERL++  A+++L  D  +
Sbjct: 61  TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           SRK+R    DS+AA LIL   LD
Sbjct: 121 SRKQRKNSSDSLAATLILSSFLD 143


>gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
           14600]
 gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
           14600]
          Length = 147

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I ++D G K +G+A +D     A     + RK   K+ +T   +        I   ++GL
Sbjct: 10  IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+NM+ SEG R    R F  + + ++  +    +DERL+T+ A +IL    V   KR + 
Sbjct: 70  PVNMDDSEGERAGMARDFA-DQVAQRTGIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128

Query: 136 VDSIAAALILQEVLD 150
           +D ++A LIL+  L+
Sbjct: 129 LDELSAQLILERYLE 143


>gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
 gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
          Length = 147

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P Q I + D GT+++G+AI       A+P P    K       +LL  +       FI
Sbjct: 4   LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFI 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+ SE       R F   +  +     ++  DERLTT  A++ L       + +
Sbjct: 64  VGLPLNMDDSESELSARARKFARRLRHQTNITTWMV-DERLTTREAREELEFYQSKGQAK 122

Query: 133 IQKVDSIAAALILQ 146
               DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQ 136


>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
 gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
          Length = 143

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
           +ID GTKR G+A++DP +  A     +     T T L  L  +   E + AF+IG P  M
Sbjct: 5   AIDYGTKRTGIAVTDPLQIIASGLCTVE----TPTLLAFLKQYTAEEAVEAFVIGQPKRM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
           N  +       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  +D
Sbjct: 61  NSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALID 120

Query: 138 SIAAALILQEVL 149
            I+A +ILQE L
Sbjct: 121 EISATIILQEFL 132


>gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
 gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
          Length = 168

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
           ++D G KRIGLA+SD     A P   + R+   +  + E++       ++ +I GLPL+ 
Sbjct: 10  AVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYIFGLPLDP 69

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G E  R    R     +  R+  +P    DER TT +A + + +   S + R   VD++
Sbjct: 70  GGDETDRSREVREVAGKLATRQ-PLPVRLVDERFTTSAALRSIREQGGSTRGRKGDVDAL 128

Query: 140 AAALILQEVL 149
           AA ++L+ VL
Sbjct: 129 AACVLLEGVL 138


>gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 156

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNMNG 81
           D+G  RIG+A  DP    A P   L R    ++ ++  + I  +  A   I+GLPLNM+G
Sbjct: 10  DVGQVRIGVAQCDPEGILATPVETLWRG---ESDIDDAAQIVRDCEAMEVIVGLPLNMDG 66

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
           +EG      RA+   + +     P    DERL+TV+A   LI    + +K+   VD  AA
Sbjct: 67  TEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQRSIVDQAAA 126

Query: 142 ALILQEVLD 150
            +IL   L+
Sbjct: 127 VVILNTALE 135


>gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58]
 gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum
           E58]
          Length = 146

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D G KR+GLA +      + P   + R K     +  L  I  E +++  I+G P+ M
Sbjct: 12  GVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIPM 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
            G++   +    A     +     +  + WDERL++  A+++L  D  +SRK+R  K D+
Sbjct: 72  YGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTDT 131

Query: 139 IAAALILQEVLDRI 152
           +AA LIL   L+R 
Sbjct: 132 LAATLILSSFLERC 145


>gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal
           Fragment)
          Length = 98

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA+ + G   A  R +LVRK + +    LL F+  E +   ++GLPL 
Sbjct: 3   VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115
            +  E  +       V  +  R V V    WDER TT
Sbjct: 63  TDLKESAQAGKVLPLVEALRARGVEVE--LWDERFTT 97


>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
           Agy99]
 gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M]
 gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
 gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
 gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
 gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 170

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 62/139 (44%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+GT RIG+A SDP    A P   + R++  +    L + +        I+GLP  + 
Sbjct: 29  GIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGLPRTLA 88

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
              G            +  R   +P    DERLTTVSAQ+ L +  V  K +   +D  A
Sbjct: 89  DRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAVIDQAA 148

Query: 141 AALILQEVLDRISFLESSK 159
           A  ILQ  LD+   L   +
Sbjct: 149 AVAILQAWLDQRRTLAGGR 167


>gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
 gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
          Length = 139

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR GLA++DP R  A+    L     +     L  ++  E +   +IG P+ 
Sbjct: 4   ILAIDYGKKRTGLAVTDPLRIIAN---GLATIPTSDIFDYLTQYVAKEPVDQLVIGKPIQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
            NG     +     FV+        +P  ++DER T+V A Q +I   V +K R +    
Sbjct: 61  PNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKGL 120

Query: 136 VDSIAAALILQEVL 149
           VD I+A +ILQ+ +
Sbjct: 121 VDEISATIILQDYM 134


>gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus
           elongatus BP-1]
 gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase
 gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1]
          Length = 151

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +DLG KRIG+A  D   + A     + R+       +L        +   I+GLP  
Sbjct: 4   VLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPYT 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G  G +    +      I   + +P  + DERLT+  A++IL     S +     VD 
Sbjct: 64  LDGQLGSQARQVQHLAEK-IGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVDQ 122

Query: 139 IAAALILQEVLD 150
           IAAALILQ+ LD
Sbjct: 123 IAAALILQQWLD 134


>gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
 gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
          Length = 143

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     + R+   Q   +L + +T       +IGLP +M+
Sbjct: 8   GLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVIGLPYSMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + F    I + + +P  + DERLT+V A+  L       +     VD +A
Sbjct: 68  GSIGFQAKQVQKFAKR-ISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNKGLVDRLA 126

Query: 141 AALILQEVLDR 151
           A +ILQ+ LD+
Sbjct: 127 ATIILQQWLDQ 137


>gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis]
 gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC
           23114]
          Length = 144

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 15/146 (10%)

Query: 19  IASIDLGTKRIGLAISDPGR---------RFAHPRPFLVRKKVTQTALELLSFITTE-NI 68
           I ++DLGTK  G AISDP           RF      LV +KV    L  L+    + +I
Sbjct: 3   ILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKV----LHYLNKSEYQGSI 58

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++G PL M+ S+  R +    F   +  + V +P VF DER +T+ AQ+IL     +
Sbjct: 59  GTIVLGYPLRMDLSKSQRTYMVERFGERL-KKVVDIPVVFQDERQSTIGAQEILQSAGWN 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154
            KK   K DS+AA LIL++ L  I +
Sbjct: 118 TKKSKSKKDSLAAQLILEDYLKGIKY 143


>gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
 gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase
 gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
          Length = 140

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75
           Q I +ID GTKRIG+A SDP   FA P   + R  +++    LLS  +    +   ++G 
Sbjct: 5   QRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSK----LLSPMVEAGEVQLVVVGY 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLN +G +         F+ ++      +P    +E  ++ SA Q+L+    SRK+R  K
Sbjct: 61  PLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKERKTK 120

Query: 136 --VDSIAAALILQEVLDR 151
             +D+ AA L+L + L++
Sbjct: 121 GRLDTAAACLLLSDYLEQ 138


>gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides
           distasonis ATCC 8503]
 gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase
 gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503]
          Length = 140

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A +D  +  A+    +   +V +    L  +I+ E +  F++GL   
Sbjct: 4   IIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGLRKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      +    AFV ++      +P  ++DER T+V A + +++  + +KKR  K  V
Sbjct: 61  MNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDKGLV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      ++LES K
Sbjct: 121 DEISAVIILQ------AYLESKK 137


>gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 199

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+GT R+G+AI D     A P   L R     + + +++ +  E      I+GLP  M
Sbjct: 17  GVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIVGLPRTM 76

Query: 80  NGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            G E       R +       +  R + VP    DERL++V+A + L +  +S +   + 
Sbjct: 77  KGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSSRNHRKV 136

Query: 136 VDSIAAALILQEVLD 150
           VD +AAA ILQ  +D
Sbjct: 137 VDQVAAAGILQHAID 151


>gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
 gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
          Length = 178

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
            +D+G  R+G A+SDP    A P   L R     +   +L   I    +    +GLP  M
Sbjct: 2   GVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKTM 61

Query: 80  NGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            G + P     R +   +      + K ++     DERLTTVSA + L +  VS +    
Sbjct: 62  RGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFKT 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD +AA  ILQ  LD +   +S  G
Sbjct: 122 MVDQVAAVNILQYSLDALKAGQSVAG 147


>gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi
           35000HP]
 gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase
 gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 138

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 31/147 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GT  IG A+                + +T+TA  L +F + + I  +       
Sbjct: 5   ILAFDFGTYSIGCAVG---------------QSITKTAQSLTAFKSQDGIPNWQHIEKII 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+GSE P     R F  N ++ +  +P    DERLTT  A+  + 
Sbjct: 50  KEWQPDLLVVGLPLNMDGSEQPLTQRARKFA-NRLNGRFNLPVALQDERLTTTEAKSEIF 108

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
                +  +  K+D+I+A LIL+   D
Sbjct: 109 SRGGYKALKKDKIDTISACLILESWFD 135


>gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 124

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           +  +D+G+K +G+A+SDP   F      +   ++ +   E     L   +    +  F++
Sbjct: 3   VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
           GLP NMN S GPR  ++ ++    I     +P  + DERLTTV A+++L++  N SR KR
Sbjct: 60  GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118


>gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
           44728]
 gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
           44728]
          Length = 151

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75
            +D+G  R+G+A+SDP    A P   + R    K V    +  ++ +  E+ +   +IGL
Sbjct: 12  GVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSVVEIVIGL 71

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ ++G E      +RA+   +      VP  F DERLTT  A + L +  V  K+R   
Sbjct: 72  PVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSERGVKGKRRKAV 131

Query: 136 VDSIAAALILQEVLDR 151
           VD  AA  ILQ  L++
Sbjct: 132 VDQAAAVEILQLWLEK 147


>gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase
 gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 155

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 7/153 (4%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ++ +KS+  ++ I  +D+G K+IG+A SD  +  A       RK +++  L  L  I  E
Sbjct: 7   DEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKD-LGYLHRIFKE 65

Query: 67  N-IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123
           N   + +IGLPL M+  E     +   F + +I +K  V     DE  +T  A   L   
Sbjct: 66  NESGSMVIGLPLKMDEQETKWCKTIIQFANKII-KKYKVNIYLQDESFSTSIATHTLKIT 124

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            +++++ K+I   D I+A +ILQ  LD+I+ ++
Sbjct: 125 GISITKSKKID--DKISACIILQRTLDKINTIK 155


>gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35239]
 gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35239]
          Length = 153

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GLP  +N
Sbjct: 8   GVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLN 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R++   +  +   +P    DERL++V+A + L    VS ++  + VD +A
Sbjct: 68  GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127

Query: 141 AALILQEVLD 150
           A  IL++ L+
Sbjct: 128 AQQILEQALE 137


>gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible
           Holliday junction resolvase in Mycoplasmas and B.
           subtilis) [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase
 gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase
 gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 137

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT  IG A+       A   P    +       ++   I        ++GLPLN
Sbjct: 5   ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSE P     + F  N ++ +  +P    DERLTTVSA+  + +    +  +  KVDS
Sbjct: 65  MDGSEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123

Query: 139 IAAALILQEVLD 150
           I+A LIL+   +
Sbjct: 124 ISACLILESWFE 135


>gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia
           mucilaginosa DY-18]
 gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia
           mucilaginosa DY-18]
          Length = 187

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
            +D+G  R+G A+SDP    A P   L R     +   +L   I    +    +GLP  M
Sbjct: 11  GVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKTM 70

Query: 80  NGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            G + P     R +   +      + K ++     DERLTTVSA + L +  VS +    
Sbjct: 71  RGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFKT 130

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD +AA  ILQ  LD +   +S  G
Sbjct: 131 MVDQVAAVNILQYSLDALKAGQSVAG 156


>gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
 gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
          Length = 137

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I SID G KR G+A++D  +  A+    +     T    + L +++  E +   +IG P+
Sbjct: 3   ILSIDYGKKRTGIAVTDSLQIIANGLATVA----TSALFDFLKTYVAQEEVERIVIGKPM 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG         + FV+        +P  F+DER T+V A Q ++   + +K R  K  
Sbjct: 59  QTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKAL 118

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           VD ++A +ILQ      S++ES +
Sbjct: 119 VDEVSATIILQ------SYMESRR 136


>gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM
           4136]
          Length = 151

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ID GT RIGLA+SD     AHP +       V Q   E+   +  + +   ++GLPL M
Sbjct: 5   GIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVEQ---EIAEIVRQKRVTTVVLGLPLRM 61

Query: 80  NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
           +G  G       AF   +   +  +V V FV  DERLT+V+A++ L  +   +K + QK 
Sbjct: 62  DGHRGEAATRVEAFADRLSKALRHEVTVKFV--DERLTSVAAERSL-GLEGKQKTKEQKK 118

Query: 136 -VDSIAAALILQEVLD 150
            VD +AA  ILQ+ L+
Sbjct: 119 LVDQVAAVAILQDYLN 134


>gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810]
 gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium
           DSM 4810]
          Length = 181

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAFIIGLP 76
            +D+G  R+GLA SD     A P   L R     +V + A EL + +        ++GLP
Sbjct: 21  GVDVGDVRVGLARSDLDGMIATPVETLERGSAVARVVEEARELEARV-------IMVGLP 73

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW----DERLTTVSAQQILIDMNVSRKKR 132
            ++NG+EG      R F   ++      P        DERLTTV+A Q L       +K 
Sbjct: 74  RSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTVTAHQALHRSGRKGRKH 133

Query: 133 IQKVDSIAAALILQEVLD 150
              VD +AA +ILQ+ LD
Sbjct: 134 RSVVDQVAAVMILQQALD 151


>gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
 gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
          Length = 153

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GLP  +N
Sbjct: 8   GVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGLPRLLN 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R++   +  +   +P    DERL++V+A + L    VS ++  + VD +A
Sbjct: 68  GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127

Query: 141 AALILQEVLD 150
           A  IL++ L+
Sbjct: 128 AQQILEQALE 137


>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
 gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 170

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFIIGLPL 77
            ID+GT RIG+A SDP    A P   + R K  +T      L + +        I+GLP 
Sbjct: 23  GIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVEVIVGLPR 82

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            +        H        +  R    P    DERLTTVSAQ+ L +  V  + +   +D
Sbjct: 83  TLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRARGQKAVID 142

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  LD+
Sbjct: 143 QVAAVGILQGWLDQ 156


>gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855]
 gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8]
 gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase
 gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM
           13855]
 gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8]
          Length = 143

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENI 68
           + +L     +  ID+GTKR+G+A++DP R FA P            AL++L  +   + I
Sbjct: 1   MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTY----APDEALDVLQALRDADGI 56

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           A  ++G PL   G+         A+V  + +    V     DER T+  A+ +L +  VS
Sbjct: 57  ARIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVS 116

Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151
           +  R  K  VD+ AAA+ILQ  L+R
Sbjct: 117 QPGRYDKGRVDAAAAAVILQGFLNR 141


>gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
 gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
          Length = 144

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GT+RIGLA  D     A P P L      +    L + +    I   ++G P NM+
Sbjct: 5   GIDYGTRRIGLAYGDE-LGIATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYPYNMD 63

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +     AF  ++   +  +P    DERLT+  A+  +    +   +    VDS A
Sbjct: 64  GSAGFKAKEVDAFAESL-RAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIVDSRA 122

Query: 141 AALILQEVLDR 151
           AALILQ+ LD+
Sbjct: 123 AALILQDFLDQ 133


>gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
 gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
          Length = 153

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GLP  +N
Sbjct: 8   GVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLN 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EG      R++   +  +   +P    DERL++V+A + L    VS ++  + VD +A
Sbjct: 68  GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127

Query: 141 AALILQEVLD 150
           A  IL++ ++
Sbjct: 128 AQQILEQAIE 137


>gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
 gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
          Length = 139

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP    A+    +     T    E L+ +I  E ++  +IG P+
Sbjct: 4   ILAIDYGKKRTGLAVTDPLCIIANGLATVP----TSELFEFLNQYIAKEAVSQLVIGKPI 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +     FV+        +P  ++DER T+V A Q +I   V +K R +   
Sbjct: 60  QPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKG 119

Query: 136 -VDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134


>gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A]
 gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii
           PG-8A]
          Length = 140

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +DLG K +G+AIS+ G   ++      + +  + A+E LL  +    I   ++GLP +M
Sbjct: 5   GLDLGEKSLGVAISESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKHM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           N   G +      F   ++  K  V  + WDERL+T +A +IL D N    K+    D +
Sbjct: 65  NNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDEV 123

Query: 140 AAALILQEVLD 150
           AA +ILQ  L+
Sbjct: 124 AAQVILQNYLN 134


>gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 137

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 19/139 (13%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA--AFIIGLP 76
           I ++D G KRIG+A SD    +A P      K +    LE    I  + I     ++GLP
Sbjct: 2   IVAVDFGLKRIGMARSDDSETWAFP-----HKTLEGNDLETKLIIELKKIGPRVVVLGLP 56

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134
            NM+G+EG    + RA    + D  V     FWDERLT+  VS Q        S KK I+
Sbjct: 57  RNMDGTEGEMAVAVRALGQRLED--VGFTVDFWDERLTSRLVSRQD-----PRSLKKAIK 109

Query: 135 ---KVDSIAAALILQEVLD 150
              KVD ++A LILQE ++
Sbjct: 110 DKGKVDLMSAVLILQEYIN 128


>gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
          Length = 157

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A+ DP    A P   +     +Q  L+  + +   +    ++GLP ++N
Sbjct: 13  AVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQARLK--AIVEEYDAVEVVVGLPRSLN 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     R +   +      V     DER+TTV+A   L     S KK    +D  A
Sbjct: 71  GKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSKKGRSVIDQAA 130

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 131 AVVILQSALE 140


>gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
 gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
          Length = 164

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G  RIG A  D   R AHP   +      +    + + I        I+GLP++++
Sbjct: 14  AFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQEWQPENLIVGLPVHID 73

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSE       R F H +  R   +P  + DERL++V A+++L +  V  +K+   +D +A
Sbjct: 74  GSEHALTRLARKFGHRLNGR-FRLPVYWVDERLSSVYAEELLRENGVRGRKQKPVLDQVA 132

Query: 141 AALILQEVLD 150
           A  ILQ   D
Sbjct: 133 AQAILQSFFD 142


>gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
           43183]
 gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
 gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
           43183]
 gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
          Length = 141

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   ++G
Sbjct: 4   IIAIDYGKKRTGIAVSDTLQMIAN-------GLTTVPTHELLAFIMDYVAKEPVERILVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      +     FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLENRRF 138


>gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 139

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G K IG+AI       A P   L  KK      E+   +   +    ++G+P N
Sbjct: 7   VIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIVVGVPFN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     R F+  + +R   +P    DERLTTV A+  L  +   +  + + +DS
Sbjct: 67  MDGTEQPITREARNFLMELKNR-FEIPVFPVDERLTTVEARSRLFALGGYKALKKKSIDS 125

Query: 139 IAAALILQEVLD 150
           IAA LI++  L+
Sbjct: 126 IAAQLIVEIWLE 137


>gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18]
 gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18]
          Length = 139

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP    A+    +     T    E L+ +I  E ++  +IG P+
Sbjct: 4   ILAIDYGKKRTGLAVTDPLCIIANGLATVP----TSELFEFLNQYIVKEAVSQLVIGKPI 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +     FV+        +P  ++DER T+V A Q +I   V +K R +   
Sbjct: 60  QPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKG 119

Query: 136 -VDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134


>gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 141

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   ++G
Sbjct: 4   IIAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVAKEPVERILVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      +     FV ++  +   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLD--RISFL 155
           K  VD I+A +ILQ  L+  R +FL
Sbjct: 117 KALVDEISATIILQTYLENKRFAFL 141


>gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G+KRIG+A  D     A     + R    Q   +    +   ++   ++GLP +MN
Sbjct: 2   GLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSMN 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G +    + +   +    + +P  + DERLT+  A+Q+L    +S  +    +D  A
Sbjct: 62  GTLGFQARQVQKYARRL-SAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRKA 120

Query: 141 AALILQEVLD 150
           AA+ILQ+ LD
Sbjct: 121 AAIILQQWLD 130


>gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori]
 gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori]
          Length = 138

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P P L  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
 gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1]
 gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
 gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1]
          Length = 175

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            ID+G+ RIG+A+SDP    A P   + R + +   L  L+ +  E  A   +IGLP  +
Sbjct: 30  GIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVVIGLPRTL 89

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               G            +  R   VP    DER TTV+AQ+ L +  V  + +   +D  
Sbjct: 90  GNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQKSMIDQA 149

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LD+
Sbjct: 150 AAVGILQNWLDQ 161


>gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640]
 gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 151

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G+E    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA  ILQ   +  S
Sbjct: 123 SVLDQVAAQAILQSFFEGGS 142


>gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
           43768]
 gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
           43768]
          Length = 151

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G+E    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  ILQ   +
Sbjct: 123 SVLDQVAAQAILQSFFE 139


>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID GTKR G+A++DP +  A     +     T T L  L  + T E +  F+IG P 
Sbjct: 3   ILAIDYGTKRTGIAVTDPLQIIASGLCTVE----TPTLLAFLKQYTTEEAVEGFVIGQPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            +N  +       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  
Sbjct: 59  RLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132


>gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 147

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P Q I + D GT+++G+AI       A+P P    K       +LL  +       FI
Sbjct: 4   LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFI 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+ SE       R F   +  +     ++  DERLTT  A++ L       + +
Sbjct: 64  VGLPLNMDDSESELSARARKFARRLRHQTNISTWMV-DERLTTREAREELEFYQSKGQAK 122

Query: 133 IQKVDSIAAALILQ 146
               DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQ 136


>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
          Length = 180

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G+K +GLA+SD   R A P   L R K  ++  A + ++ ++  ++A F++G P N
Sbjct: 26  GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134
           + G   P     R  V  +        + + +WDE  T+  +  + +L  + +      +
Sbjct: 86  LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKVMCVEALLHPLKLHDPVETK 145

Query: 135 KV-DSIAAALILQEVLDRIS 153
            + D  AA  ILQ  LD ++
Sbjct: 146 TMTDKFAAVCILQRYLDNMN 165


>gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 147

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++ +Q I + D GT+++G+AI       A+P P  + K       +LL  +       F+
Sbjct: 4   IQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFL 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+ SE       R F   +  +     ++  DERLTT  A++ L       + +
Sbjct: 64  VGLPLNMDDSESELSARARKFARRLRHQTNIQTWMV-DERLTTREAREELESYQSKGQAK 122

Query: 133 IQKVDSIAAALILQ 146
               DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQ 136


>gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP]
 gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase
 gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 146

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           ++DLGTK  G AISDP    FA P           KKV     +L  +         I+G
Sbjct: 9   ALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVIN---KLKHYEKKYEFDTIILG 65

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            PL M G+   R      F   ++ +      V  DERL+TV A+ +L + N+S+ K  +
Sbjct: 66  YPLRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQSKIKE 124

Query: 135 KVDSIAAALILQEVLD 150
           K DS+AAAL+L   L+
Sbjct: 125 KKDSMAAALLLNYYLN 140


>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
          Length = 180

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G+K +GLA+SD   R A P   L R K  ++  A + ++ ++  ++A F++G P N
Sbjct: 26  GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134
           + G   P     R  V  +        + + +WDE  T+  +  + +L  + +      +
Sbjct: 86  LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKVMCVEALLHPLKLHDPVETK 145

Query: 135 KV-DSIAAALILQEVLDRIS 153
            + D  AA  ILQ  LD ++
Sbjct: 146 TMTDKFAAVCILQRYLDNMN 165


>gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase
 gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase
 gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase
 gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 138

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P P +  +  T   + +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1]
 gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase
 gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 128

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 7/131 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +A+ID+G KRIG AI   GR    P+  ++RK   Q A +++SF+    I   ++GLP  
Sbjct: 3   LAAIDVGLKRIGTAICLDGR-IVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLPKG 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            + SE       R   H +   ++ +P V+ DE+ ++  A+++       R K+  K+DS
Sbjct: 62  GSSSE----EMERRIQHFVSLLELDIPVVYQDEQGSSFEAKEMT--QGQFRHKKDGKIDS 115

Query: 139 IAAALILQEVL 149
           IAA +IL+  L
Sbjct: 116 IAAKIILERHL 126


>gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
 gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
          Length = 138

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   I+G
Sbjct: 4   IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGDYIAKEPVERIIVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + + +  + +K R  
Sbjct: 57  LPRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138


>gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
 gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
          Length = 141

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A+SD  +  A+    L      Q    ++ ++  E +   ++GLP  
Sbjct: 4   IIAIDYGRKRTGIAVSDTLQMIANG---LTTVPTHQLLAFIIDYVAKEPVERILVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      + +   FV ++ ++   +P  + DER T+V A + +++  + +K R  K  V
Sbjct: 61  MNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLDRISF 154
           D I+A +ILQ  L+   F
Sbjct: 121 DEISATIILQTYLENKRF 138


>gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5]
          Length = 137

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 17/140 (12%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIAAFIIGLP 76
           I +ID GTKR G+A+SDP R  A        + V    LE  L  +   E++   ++G P
Sbjct: 4   ILAIDYGTKRTGIAVSDPLRLIAGG-----LETVETKGLEAWLAKYFAAEDVTTIVVGKP 58

Query: 77  LNMNGSEGPRVHSTRAFVHNMID--RKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKR 132
             M+G+       T  FV  +    R+ Y     VF+DER T+V A + +++  + R  R
Sbjct: 59  TQMDGTP----SETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMAR 114

Query: 133 IQK--VDSIAAALILQEVLD 150
             K  VD I+A +ILQ  ++
Sbjct: 115 RNKALVDKISATIILQSYME 134


>gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
 gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
          Length = 138

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 17/141 (12%)

Query: 19  IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           I + D GTKRIG+A++DP      G    HP+  +           L  ++  E + AF+
Sbjct: 4   ILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEY---------LKKYLLAEQVEAFV 54

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
            G P  M+G+        + F   +      +P  + DER T+  A Q ++   + ++ R
Sbjct: 55  FGDPKQMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDR 114

Query: 133 IQK--VDSIAAALILQEVLDR 151
             K  VD+I+A +ILQ  +++
Sbjct: 115 KNKERVDTISATIILQYFMEQ 135


>gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
 gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
          Length = 141

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A+SD  +  A+    L      Q    +L ++  E +   ++GLP  
Sbjct: 4   IIAIDYGRKRTGIAVSDTLQMIANG---LTTVPTHQLLTFILDYVAKEPVERILVGLPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN      + +   FV ++  +   +P  + DER T+V A + +++  + +K R  K  V
Sbjct: 61  MNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNKALV 120

Query: 137 DSIAAALILQEVLDRISF 154
           D I+A +ILQ  L+   F
Sbjct: 121 DEISATIILQTYLENRRF 138


>gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
 gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
          Length = 151

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G+E    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  ILQ   +
Sbjct: 123 SVLDQVAAQAILQSFFE 139


>gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195]
 gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase
 gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides
           ethenogenes 195]
          Length = 133

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           +G K IG+A+SDP R  A P   L R    +T   + + + T      +IGLP+++NG+ 
Sbjct: 1   MGDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTI 60

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
           GP+    +AF   ++ + +    +F DER +T  A++ + D    +  +  + D+ AAA+
Sbjct: 61  GPQAEKVKAF-SGLLSQSLNTEIIFRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117

Query: 144 ILQEVLDRIS 153
           ILQ+ LD  +
Sbjct: 118 ILQDYLDETN 127


>gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 105

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           E +   ++G PL+M+G           F   M+  +  +P   +DERLTTVSA++ILI+ 
Sbjct: 8   EEVGRIVVGRPLHMSGQPSEMTSRAEKFAR-MLAARTGLPVDLYDERLTTVSAERILIEQ 66

Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
           NV R++R   VD+ AA ++L++ L
Sbjct: 67  NVRRRERRATVDAAAAQVLLEDYL 90


>gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
 gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
          Length = 158

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G+KR+G+A  D     A     + RK   +   E+   +    +   ++G+P + +
Sbjct: 14  GLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSRD 73

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + F  N + + + +P  + DERLT+  A+Q+L+  N S       VD  A
Sbjct: 74  GSIGEQARRIQKFA-NRLAKTLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRKA 132

Query: 141 AALILQEVLD 150
           A++ILQ+ LD
Sbjct: 133 ASIILQQWLD 142


>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
 gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
          Length = 175

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +D+GT RIG+A+SDP    A P   + R K+ T+    L + +    +   ++GLP  +
Sbjct: 30  GVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVVVGLPRTL 89

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               G            +  R   VP    DER TTV+AQ+ L +  V  + +   +D  
Sbjct: 90  ADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQRSVIDQA 149

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LD+
Sbjct: 150 AAVGILQNWLDQ 161


>gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina
           MBIC11017]
 gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase
 gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina
           MBIC11017]
          Length = 144

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG +RIG+A  D     A     + R   T+    L   +    +   ++GLP  M 
Sbjct: 8   GLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVVGLPYTMK 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G +   T+      I + + +P  F DERLT+  A+ ++ +  ++  ++   +D  A
Sbjct: 68  GEVGTQAQKTQKLAKR-IAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMIDRKA 126

Query: 141 AALILQEVLDRISFLESS 158
           AALILQ  LD+  +L S+
Sbjct: 127 AALILQRWLDQKPWLSST 144


>gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
 gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum
           Weiss]
 gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum
           MopnTet14]
          Length = 145

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAF 71
           +K  +    +D G KRIGLA +        P   +     +  TA  L++ I    +   
Sbjct: 1   MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
           + G PL M  S    V S    +  ++     +  + WDERL++  A+++L  D  +SRK
Sbjct: 61  VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
           +R    DS+AA LIL   LD
Sbjct: 121 QRKNSSDSLAATLILSSFLD 140


>gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
 gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
          Length = 158

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + +      L   +        ++GLP +++
Sbjct: 12  AIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEPLEVVVGLPRSLS 71

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF + +      V     DER+TTV+A Q L     + KK    +D  A
Sbjct: 72  GREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRNAKKGRSVIDQAA 131

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 132 AVVILQNALE 141


>gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 155

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 7/153 (4%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ++ +KS+  ++ I  +D+G K+IG+A SD  +  A       R+ +++  L  L+ +  E
Sbjct: 7   DEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKD-LGYLNRVLKE 65

Query: 67  NIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123
           N A + +IGLP  ++  E         F + +I +K  V     DE L+T  A   L   
Sbjct: 66  NEAGSMVIGLPFTIDEQETEWCKVIIQFANKII-KKCKVHIYLQDESLSTSLATHALKIT 124

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            +++++ K+I   D IAA +ILQ  LD+I+ ++
Sbjct: 125 GISITKSKKID--DKIAACIILQRTLDKINAIK 155


>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 169

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 57/131 (43%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G+ RIG+A SDP    A P   + R +  +    L            ++GLP  + 
Sbjct: 26  GVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVVGLPRTLA 85

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
              GP           +  R    P    DERLTTVSAQ+ L    V  K++   +D  A
Sbjct: 86  DRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQRAVIDQAA 145

Query: 141 AALILQEVLDR 151
           A  ILQ  LD+
Sbjct: 146 AVAILQSWLDQ 156


>gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
 gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
          Length = 141

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77
           I  ID GTKRIG+A SDP   FA P    V     +  L  LS I   E I   ++G PL
Sbjct: 8   IIGIDFGTKRIGVAKSDPLGMFAQP----VGTFDMEGLLGALSKIRNEEGIERIVVGYPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
           +  G E         F   +      VP    DE  ++ SA ++L     SRKKR +K  
Sbjct: 64  SDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEKGR 123

Query: 136 VDSIAAALILQEVLD 150
           +D+ AA LILQ  LD
Sbjct: 124 LDTAAACLILQSWLD 138


>gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase
 gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 137

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT  IG A+       A   P    +       ++   I        ++GLPLN
Sbjct: 5   ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F  N ++ +  +P    DERLTTVSA+  + +    +  +  KVDS
Sbjct: 65  MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123

Query: 139 IAAALILQEVLD 150
           I+A LIL+   +
Sbjct: 124 ISACLILESWFE 135


>gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 137

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT  IG ++       A   P    +       ++   I        ++GLPLN
Sbjct: 5   ILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSE P     + F  N ++ +  +P    DERLTTVSA+  + +    +  +  KVDS
Sbjct: 65  MDGSEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123

Query: 139 IAAALILQEVLD 150
           I+A LIL+   +
Sbjct: 124 ISACLILESWFE 135


>gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107]
 gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus
           Ueda107]
          Length = 143

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A      R A   P L  +       E+ + + T      ++GLPLNM+
Sbjct: 7   AFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           GSE       R F +    R  V V  V  DERL++  A+  +++   SR  R   VDSI
Sbjct: 67  GSESELSARARKFANRTQGRFGVKVEMV--DERLSSFEAKGEVMERGGSRDYRHNPVDSI 124

Query: 140 AAALILQEVLDR 151
           AA LIL+  L+R
Sbjct: 125 AARLILEAWLER 136


>gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA
           1090]
 gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
 gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase
 gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
          Length = 151

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHADGTEHEMTHLSRKFGRRLNGR-FNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL   L+
Sbjct: 124 VLDQVAAQAILHGFLE 139


>gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
           25976]
 gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
           25976]
          Length = 137

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 31/147 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GT  IG A+                + +T TA  L SF   + I  +       
Sbjct: 5   ILAFDFGTYSIGCAVG---------------QDITGTAQGLSSFKAQDGIPNWDQIEKVI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+G+E P     + F  N ++ +  +P    DERLTTVSA+  + 
Sbjct: 50  QEWLPERLVVGLPLNMDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIF 108

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +    +  +  KVDSI+A LIL+   +
Sbjct: 109 ERGGYKALKKDKVDSISACLILESWFE 135


>gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase
 gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 142

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTKR G+A SD G   A PR  +V     +   ELL+    E   A+++GLPL  +
Sbjct: 5   GIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLHD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G++       R FV  +  R+  +P    +E L++  A+  L D  +S +     VD  A
Sbjct: 65  GTDTLTTRQVRNFVERL-KRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVDQQA 123

Query: 141 AALILQEVLD 150
           A  ILQ  L+
Sbjct: 124 AVRILQSFLN 133


>gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
 gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
          Length = 141

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   ++G
Sbjct: 4   IIAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVAKEPVERILVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      +     FV ++  +   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQTYLENKRF 138


>gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
 gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
          Length = 153

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS--FITTENIAAFIIGLPLNM 79
           ID+G  R+G+A SDP    A P   + R   +   + LL+  F   E     ++GLP+ +
Sbjct: 9   IDVGKVRVGVARSDPHGMIATPVETVQRASSSIKRILLLAVEFEAVE----LVVGLPIAL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G + P     RAF   + D    +     DER+TT+SAQ  L     + K     VD +
Sbjct: 65  SGRDTPSTADARAFAQELADGS-DITVRLVDERMTTMSAQSALRASGRTTKNSRSVVDQV 123

Query: 140 AAALILQEVLD 150
           AA +ILQ  LD
Sbjct: 124 AAVIILQHALD 134


>gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase
 gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 138

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS]
 gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase
 gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 142

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAA 70
           S   ++ I  ID GTKRIG+A+SDP R FA P      + + +    +LS +   E I  
Sbjct: 2   SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVR----VLSRVRDDEGIEL 57

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G P++  G E         FV  + +         +DE  ++ +A +IL     SRK
Sbjct: 58  VVVGYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRK 117

Query: 131 KRIQK--VDSIAAALILQEVLD 150
           KR +K  +D+ AA LILQ  LD
Sbjct: 118 KRNEKGRLDTAAACLILQGYLD 139


>gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
           CS-505]
          Length = 154

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G+KR+G+A  D     A     + RK   +   E+   +    +   ++G+P + +
Sbjct: 14  GLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSGD 73

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + F  N + + + +P    DERLT+  A+Q+L+  N S       VD  A
Sbjct: 74  GSMGEQARRIQKFA-NRLAKALGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRKA 132

Query: 141 AALILQEVLD 150
           A++ILQ+ LD
Sbjct: 133 ASIILQQWLD 142


>gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis]
          Length = 167

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 20/164 (12%)

Query: 1   MSILLIEDL------VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
           M++L ++ L      V  ++P   +  +D+GT  +G+A+SDP    A P+  L+R    +
Sbjct: 1   MAVLTVKQLQSLYSKVAHIRPR--LLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLR 58

Query: 55  --TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDE 111
              +  L+  +      AF++GLPL  +G E  +    + F+H   +  ++ +P VF DE
Sbjct: 59  PFKSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDE 118

Query: 112 RLTTVSAQQILIDMNVSRKKR-----IQKVDSIAAALILQEVLD 150
             +T    Q+ +D    +KKR     ++K D  AAA+ILQ  LD
Sbjct: 119 WGST----QMAMDDYRYQKKRDWNRGLRKKDENAAAIILQSFLD 158


>gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS]
 gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS]
          Length = 133

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           +G K IG+A+SDP R  A P   L R    +T   + + + T      ++GLP+++NG+ 
Sbjct: 1   MGDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTI 60

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
           GP+    +AF   ++ + +    VF DER +T  A++ + D    +  +  + D+ AAA+
Sbjct: 61  GPQAEKVKAF-SGLLSQSLDTEIVFRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117

Query: 144 ILQEVLDRIS 153
           ILQ+ LD  +
Sbjct: 118 ILQDYLDETN 127


>gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis
           L2TR]
 gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase
 gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR]
          Length = 144

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+A+       A P   +  K+       +            ++GLPLN
Sbjct: 4   VIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGLPLN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F  N +  +  +P  F DERLT+ SA++ L      RK +   VDS
Sbjct: 64  MDGTEQPLTQKAKKF-GNRLHGRFGLPVAFQDERLTSTSARESLFAEGGFRKLKKGAVDS 122

Query: 139 IAAALILQEVLD 150
            AA +I+++ ++
Sbjct: 123 QAALIIVEDFMN 134


>gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 138

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   SFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVVILESYFEQ 136


>gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
           29220]
 gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
           29220]
          Length = 138

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   SFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group]
          Length = 237

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R G+A+   GR    PRP  V K +  +  L LL     +     I+GLP++ 
Sbjct: 78  GVDLGEARTGVAV---GRGITLPRPLTVLKLRGQKLELMLLDIAQQQEADELIVGLPVSA 134

Query: 80  NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           +GSE P+ +  R+ V  +     DR + V     DE  TT+ A + +I   V R  R  K
Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRV--YLQDEHGTTIDALEFMISRGVKRSARDVK 192

Query: 136 VDSIAAALILQ 146
            D+ +A +IL+
Sbjct: 193 SDAYSAMMILE 203


>gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
          Length = 141

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
           ++D GTKR G+A+SD  +  A+    +     T T L+ L +++  E++   I+GLP  M
Sbjct: 6   ALDYGTKRTGIAVSDTLKIIANGLTTVP----THTLLDYLKTYLQKEDVERIIVGLPKQM 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
           N      +   R FV  +      +   ++DER T+  A + ++D  + +  R  K  VD
Sbjct: 62  NNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNKSLVD 121

Query: 138 SIAAALILQEVLDRI 152
            I+A +ILQ  ++ +
Sbjct: 122 EISATIILQGYMESL 136


>gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
 gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
          Length = 190

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFI--TTENIAAFI-IGL 75
           ++D+GT R+G+A SDP    A P   L R   K + TA ++        E  A  + +GL
Sbjct: 20  AVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVGL 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +++G+EG      RA+   +      V     DER++TVSA   L     S ++  + 
Sbjct: 80  PRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHREV 139

Query: 136 VDSIAAALILQEVLD 150
           VD  AA +ILQ  LD
Sbjct: 140 VDQAAAVVILQHALD 154


>gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 164

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-------KVTQTALELLSFITTEN 67
           P  P   +DLG  RIGLAISD G  FA P   L R         +      L   +    
Sbjct: 4   PLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEHR 63

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           IA  ++G P N+ G       +   FV  +      VP    DER+TT+ A + L +  V
Sbjct: 64  IALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAGV 123

Query: 128 SRKKRIQK-----VDSIAAALILQEVLD 150
           S K+ ++K     VD +AA  ILQ  LD
Sbjct: 124 SGKRLVRKGQRGVVDQLAATAILQGWLD 151


>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
 gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
          Length = 138

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A+SDP +  A     L      Q    LL++I  E +   IIG P  
Sbjct: 4   ILAIDYGRKRTGIAVSDPLQIIASG---LTTVPTHQLMDFLLNYIKQEQVECIIIGHPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           +N  +   + +   F++ +      +P    DER T+V A Q ++   + +K R  K  V
Sbjct: 61  LNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNKALV 120

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D I+A +ILQ      S+LES +
Sbjct: 121 DEISATIILQ------SYLESRR 137


>gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 142

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G  RIG+A  D     +HP   +      +    +   +       F++GLP++ +
Sbjct: 2   AFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHTD 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           G+E    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR   +D +
Sbjct: 62  GTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119

Query: 140 AAALILQEVLD 150
           AA  ILQ   +
Sbjct: 120 AAQAILQSFFE 130


>gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
 gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
          Length = 200

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR------KKVTQTALELLSFITTEN-IAA 70
           P   IDLG  RIGLAISDP   FA P   L R      K      L  L+ +  E+ IA 
Sbjct: 43  PRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRIAL 102

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G P N+ G       +   FV  + +    VP    DER+TT+ A + L +  VS K
Sbjct: 103 VVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVSGK 162

Query: 131 KRIQK-----VDSIAAALILQEVLD 150
           + ++K     VD +AA  ILQ  LD
Sbjct: 163 RLVRKGQRGVVDQLAATAILQGWLD 187


>gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
 gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
          Length = 146

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I SID G KR GLA++D  +  A+    +     T   ++ L  +I  E +   +IG P+
Sbjct: 4   ILSIDYGKKRTGLAVTDSLQIIANGLATVS----TSILIDFLKDYIAKETVELIVIGRPV 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             +G+    +     FV+        VP  ++DER T+V A ++++D  + +K R ++  
Sbjct: 60  KPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRERKG 119

Query: 136 -VDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDFM 134


>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104]
 gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 165

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+G+ RIG+A SDP    A P   + R +  +    L + +T       ++GLP  + 
Sbjct: 24  GIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGLPRTLA 83

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
              G            +  R    P    DERLTTV+AQ+ L    V  K++   +D  A
Sbjct: 84  DRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAA 143

Query: 141 AALILQEVLD--RISFLESSKG 160
           A  ILQ  LD  R +  E+  G
Sbjct: 144 AVAILQSWLDQRRAAVREAGDG 165


>gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group]
 gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group]
 gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group]
 gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group]
 gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group]
 gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 237

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R G+A+   GR    PRP  V K +  +  L LL     +     I+GLP++ 
Sbjct: 78  GVDLGEARTGVAV---GRGITLPRPLTVLKLRGQKLELMLLDIAQQQEADELIVGLPVSA 134

Query: 80  NGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           +GSE P+ +  R+ V  +     DR + V     DE  TT+ A + +I   V R  R  K
Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRV--YLQDEYGTTIDALEFMISRGVKRSARDVK 192

Query: 136 VDSIAAALILQ 146
            D+ +A +IL+
Sbjct: 193 SDAYSAMMILE 203


>gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
 gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
          Length = 139

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID G KR GLA++DP R  A+     +    T    + L+ +I  E +   +IG P+
Sbjct: 4   ILAIDYGKKRTGLAVTDPLRIIANG----LATVATSGLFDFLTQYIAEEPVDRLVIGRPV 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             +G     +     FV+        +P  ++DER T+V A Q LI   V +K R +   
Sbjct: 60  QPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRRENKG 119

Query: 136 -VDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134


>gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila
           DSM 44928]
 gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM
           44928]
          Length = 171

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+GT RIG+A  D     A P    V+ +  + +L+ L+ +  E  A   ++GLP ++
Sbjct: 22  GVDVGTVRIGVASCDRDGLLATPV-ETVKAEPRRASLDRLAALAAEYEAFEIVVGLPRSL 80

Query: 80  NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G EGP     RA+  +++ R     P    DERL+TV+A Q L    V  KK    VD 
Sbjct: 81  SGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGRSVVDQ 140

Query: 139 IAAALILQEVLD 150
            AA +ILQ  LD
Sbjct: 141 AAAVVILQNALD 152


>gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35243]
 gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35243]
          Length = 145

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GLP  +NG
Sbjct: 1   MDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNG 60

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
            EG      R++   +  +   +P    DERL++V+A + L    VS ++  + VD +AA
Sbjct: 61  KEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAA 120

Query: 142 ALILQEVLD 150
             IL++ ++
Sbjct: 121 QQILEQAIE 129


>gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
           19061]
          Length = 139

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GT+ IG AI                ++VT TA  L +F   E    +    
Sbjct: 3   NRTIIAFDFGTRSIGAAIG---------------QEVTGTARALSAFKANEGSPNWQLIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      I+GLPLNM+G+E P     R F  N +  +  V     DERLTTV A+ 
Sbjct: 48  KLLKEWQPDLVIVGLPLNMDGTEQPVTAQARKFA-NRLHGRFGVQVALHDERLTTVEARS 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    +     KVD+ +A +IL+   +R
Sbjct: 107 HLFDHGGYKALNKGKVDAASAVIILESWFER 137


>gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900]
          Length = 146

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       FI+GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +     ++  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQ 146
            DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135


>gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase
 gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase
 gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 138

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 158

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 60/130 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID+G  RIG+A  DP    A P   +  + V      L   +        ++GLP +++
Sbjct: 12  AIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEPLEVVVGLPRSLS 71

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G EGP     RAF   +      V     DER+TTV+A Q L     + KK    +D  A
Sbjct: 72  GREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKNAKKGRSVIDQAA 131

Query: 141 AALILQEVLD 150
           A +ILQ  L+
Sbjct: 132 AVVILQNALE 141


>gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase
 gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase
 gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase
 gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase
 gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase
 gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase
 gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase
 gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase
 gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase
 gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 138

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 138

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR+GLA++DP +  A     +  K V Q    L  +   E I  F++G+P  
Sbjct: 4   IVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQF---LKDYHEQEGIELFVVGMPKR 60

Query: 79  MNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           ++G+E        AF++    N  D  +       DER T+  A   +I    ++K R +
Sbjct: 61  LDGTESHATKHVEAFLNLLKKNFPDTDIET----HDERFTSKIALNAMIAGGTTKKYRRE 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  +D ++A +ILQ  L+++  
Sbjct: 117 KGNIDKVSAVVILQSYLEKMQL 138


>gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF]
 gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
 gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           ACICU]
 gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057]
 gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624]
 gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606]
 gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           AB056]
 gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           AB058]
 gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           AB059]
 gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013150]
 gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013113]
 gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6014059]
 gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
 gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii]
 gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU]
 gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
 gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624]
 gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606]
 gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2]
 gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013150]
 gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013113]
 gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6014059]
          Length = 146

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       FI+GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +     ++  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQ 146
            DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135


>gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
          Length = 135

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID GTKR G+A++DP +  A     L     T+    L  +   E++ AF++G P N++
Sbjct: 2   AIDYGTKRTGIAVTDPLQIIASG---LDTVPTTELMNFLRQYCQEEDVEAFVVGEPKNLD 58

Query: 81  GSEGPRVHSTRAFV---HNMI-DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
            +     H   AFV    N+  D++V    +  DER T+  A + +     SRKKR  K 
Sbjct: 59  DTPAQIHHLVMAFVAQIENLFPDKRV----ILRDERFTSKDATRSIRQSVPSRKKRRDKG 114

Query: 136 -VDSIAAALILQEVLDRISF 154
            VD ++A +ILQE L++  +
Sbjct: 115 LVDKVSAVIILQEYLEKYKY 134


>gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena
           CCY9414]
 gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena
           CCY9414]
          Length = 156

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 17  QPIAS---IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           QP  S   +D G KR+G+A  D     A     + R    +   ++ + +    +   +I
Sbjct: 8   QPFISALGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVI 67

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +M+G+ G +    + F   +  + + +P  + DERLT+  A+Q+LI  N S  +  
Sbjct: 68  GLPYSMDGTLGFQARQVQKFAKRL-GKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHK 126

Query: 134 QKVDSIAAALILQEVLD 150
             +D  AA++ILQ+ LD
Sbjct: 127 GLIDRKAASIILQQWLD 143


>gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str.
           'morsitans']
 gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase
 gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 141

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 11/139 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRP---FLVRKKV--TQTALELLSFITTENIAAFII 73
           I + D GT+ IG+AI    R     RP   F  R  V   Q   +LL     E +   ++
Sbjct: 7   IMAFDFGTRSIGVAIGQ--RVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETV---VV 61

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+GSE P     R F + M  R   V  V  DERL+TV A+  L +    R    
Sbjct: 62  GLPLNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALEK 120

Query: 134 QKVDSIAAALILQEVLDRI 152
            KVD+ +A +IL+  L++ 
Sbjct: 121 GKVDAGSAVIILESWLEQF 139


>gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           35/02]
 gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           DGI18]
 gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           FA6140]
 gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           FA19]
 gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           MS11]
 gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID18]
 gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID1]
 gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID24-1]
 gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID332]
 gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           DGI2]
 gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 151

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHADGTEHEMTHLSRKFGRRLNGR-FNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL   L+
Sbjct: 124 VLDQVAAQAILHGFLE 139


>gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
 gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168]
          Length = 91

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I+  ++G PL + G   PR      F  +++ +   +  VF DERLTT  AQ  L+D+ +
Sbjct: 6   ISILVLGYPLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGI 64

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           S KKR + +D +AA +IL+       FL + KG
Sbjct: 65  SFKKRQKVIDKLAAQIILER------FLNTKKG 91


>gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
           23970]
 gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
           23970]
          Length = 151

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G+E    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAESLLSEARVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D  AA  ILQ   +
Sbjct: 123 SVLDQAAAQAILQSFFE 139


>gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 151

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL    +
Sbjct: 124 VLDQVAAQAILHGFFE 139


>gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
           342]
 gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase
 gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
           342]
          Length = 138

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK IG+A+       A P P L  +        +   +      A I+GLPLNM+
Sbjct: 7   GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V  V  DERL+TV A+  L +    R      VDS +
Sbjct: 67  GTEQPLTARARNFA-NKIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVVILESYFEQ 136


>gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM
           43017]
 gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis
           DSM 43017]
          Length = 154

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           ++D+G+ R+G+A+SDP    A P   L R   T   LE L+ +  E ++   I+GLP  +
Sbjct: 11  AVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVIVGLPRTL 70

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               G        +   + +R   V     DERL+TVSA ++L    V  +K+   VD  
Sbjct: 71  ADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQRAVVDQA 130

Query: 140 AAALILQEVLD 150
           AA   LQ  LD
Sbjct: 131 AAVEFLQAWLD 141


>gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT]
 gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336]
 gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase
 gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase
 gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus
           129PT]
 gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336]
          Length = 141

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG A+       A   P    +      L++   +        ++GLPLN
Sbjct: 5   VLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSE    H  R F  N ++ +  V     DERLTT  A+  +      R  + +KVDS
Sbjct: 65  MDGSEQDLTHLARKFA-NRLNGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVDS 123

Query: 139 IAAALILQEVLD 150
           I+A LIL+   +
Sbjct: 124 ISACLILESWFE 135


>gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
           6946]
          Length = 135

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + IAS+D+G KRIG+A+         P+  ++RK   Q A E+ +F+T   I   ++GLP
Sbjct: 2   KKIASLDVGLKRIGVALC-LASGIVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGLP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              +  E       R   H +         V+ DE  +++ A++++    + R+KR  K+
Sbjct: 61  KGGSSEE----EMKRRITHFVSLLAFSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGKI 114

Query: 137 DSIAAALILQEVLD 150
           DSIAA +IL+  LD
Sbjct: 115 DSIAAKVILERYLD 128


>gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 233

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R GLA+S   + F+  RP  V K +  +  L+LL     E +  FIIGLP++ 
Sbjct: 68  GVDLGMSRTGLALS---KGFS-VRPLSVLKLRGQKLELQLLEIAGREEVDEFIIGLPVSD 123

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+    +  R     +  +  DE  T+  A  ++IDM  S+  R  ++D
Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183

Query: 138 SIAAALILQ 146
           + AA ++L+
Sbjct: 184 AYAAMMVLE 192


>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
 gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 167

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 2/142 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+G+ RIG+A SDP    A P   + R +  +    L + +T       ++GLP  + 
Sbjct: 26  GIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGLPRTLA 85

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
              G            +  R    P    DERLTTV+AQ+ L    V  K++   +D  A
Sbjct: 86  DRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAA 145

Query: 141 AALILQEVLD--RISFLESSKG 160
           A  ILQ  LD  R +  E+  G
Sbjct: 146 AVAILQSWLDQRRAATREAGDG 167


>gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
 gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
 gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
 gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
          Length = 139

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK IG+A+       A P P L  +        +   +      A I+GLPLNM+
Sbjct: 8   GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V  V  DERL+TV A+  L +    R      VDS +
Sbjct: 68  GTEQPLTARARNFA-NKIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 126

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 127 AVVILESYFEQ 137


>gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium
           SCB49]
 gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium
           SCB49]
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++D  +  A     L   + ++    L S++  EN+ A ++G P  
Sbjct: 4   ILAIDYGGKRTGIAVTDEMQIIASG---LTTVETSKLLPFLESYLANENVTALVVGEPTQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            +G+        + F+   +     +P    DER T+  A Q +ID  + +K+R  K  V
Sbjct: 61  KDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNKALV 120

Query: 137 DSIAAALILQEVL 149
           D IAA +ILQE +
Sbjct: 121 DEIAATIILQEFM 133


>gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM
           14977]
 gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM
           14977]
          Length = 133

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  RIG+A+++ GR  A  R ++ R+ +      +      E     ++GLP    
Sbjct: 3   GLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRTG 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
           G EG +    RAF   +    + V FV  DER TT  A Q L   ++ RKKR QK  +D 
Sbjct: 63  GEEGAQAAKVRAFAAALEAAGLEVRFV--DERFTTRVAAQAL--AHLPRKKRQQKGRLDE 118

Query: 139 IAAALILQEVLDR 151
            AA  IL+  L+R
Sbjct: 119 AAAVAILETYLER 131


>gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01]
 gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 128

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           +G  RIGLA+ + G  FA  R +LVR+ + +    LL F+  E +   ++GLPL  +  E
Sbjct: 1   MGEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKE 60

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
             +       V  +  + V V  V  DER TT +A + L       ++   ++D ++A +
Sbjct: 61  SAQAQRVLPLVEALRAKGVEVELV--DERYTTQAAARRLKHAPKRIRREKGRLDEMSAVI 118

Query: 144 ILQEVL 149
           +L+  L
Sbjct: 119 LLEGYL 124


>gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
 gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
          Length = 139

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLN 78
           ++DLG++  G AISD  G        F   +   Q  L EL  +     I   I+G PL 
Sbjct: 5   ALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILGYPLK 64

Query: 79  MNGSEGP---RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            +GS+     RV S +  + + ID KV    V  DE+ +T +A+ ILI   + RKKR Q 
Sbjct: 65  NDGSKSQSTLRVESFKKMIEDNIDIKV----VLVDEQYSTKNAENILIFSGMKRKKRKQF 120

Query: 136 VDSIAAALILQEVL 149
            D +AA LIL++ L
Sbjct: 121 KDKLAAQLILEDFL 134


>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
          Length = 171

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 83/156 (53%), Gaps = 11/156 (7%)

Query: 5   LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61
           L  DLVK+ +  +  +  +D+G K +GLA+SD   + A P   LVRKK  +   A +  S
Sbjct: 9   LFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAADFKS 68

Query: 62  FITTENIAAFIIGLPLNMN--GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVS 117
            ++  ++  F+IGLP + +   S+  +V   + F+ N+    ++  + + +W+E  T+ +
Sbjct: 69  LVSKYSLKGFVIGLPFDRHLVSSDAVKV---KVFIDNLRRTNMFDGLKYTYWNECFTSKN 125

Query: 118 AQQILIDMNVSRKKRIQK-VDSIAAALILQEVLDRI 152
            + ++  +N++     +  +D  AA  ILQ  LD +
Sbjct: 126 VEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYV 161


>gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 146

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       F++GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F    +  +  +  +  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQ 146
            DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135


>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
 gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 144

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GT+R G+A++D     A PR  +V         ELLS +  E  A  ++GLPL   
Sbjct: 5   GIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLAG 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E       R FV  +  R+  +P     E L++  A + L +  +S ++R   VD  A
Sbjct: 65  GEETLITRQVRNFVARL-RRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQA 123

Query: 141 AALILQEVLD 150
           A  IL+  L+
Sbjct: 124 AVRILESFLN 133


>gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 140

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   ++G
Sbjct: 4   ILAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLTFILDYVGKEPVERILVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      +     FV  +  +   +P  + DER T+V A + +++  + +K R  
Sbjct: 57  LPKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 117 KALVDEISATIILQSYLENKRF 138


>gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
 gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
          Length = 146

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       F++GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F    +  +  +  +  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQ 146
            DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135


>gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
 gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
          Length = 139

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFA----HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           ++DLG++  G AISD     A    + R F    +  +   E+L ++    I   I+G P
Sbjct: 5   ALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKN--EVLRYMKEYKIDGIILGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              +GS+    +    F  +++ + + +P ++ DE+ +T +A++ILI + ++R+KR    
Sbjct: 63  KKNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKNFK 121

Query: 137 DSIAAALILQEVLD 150
           D +AA LIL++ L+
Sbjct: 122 DKLAAQLILEDYLN 135


>gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase
 gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 141

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 19/147 (12%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR+GL+++DP +  A P   L       T   L +++  EN+ AF++G P +
Sbjct: 4   IMAIDYGLKRVGLSVTDPLQIIASP---LTTVAANDTLTFLQTYVKKENVEAFVVGYPTD 60

Query: 79  MNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +     P + +   F+     N  D++++      DER T+  A   L++    +K R  
Sbjct: 61  IKDKNTPIIVAISQFIELLQRNFPDQQIFQ----HDERYTSKLAAASLVEGGFKKKDRRN 116

Query: 135 K--VDSIAAALILQEVLDRISFLESSK 159
           K  +D ++A +ILQ      SFL S K
Sbjct: 117 KENLDKLSATIILQ------SFLSSYK 137


>gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase
 gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 155

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+GT RIG++ SD     A P   + R         +   +T   +   I+GLPL ++
Sbjct: 8   GIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLALS 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G          AF   ++  +V  P    DERL+TVSA   L     + K     VD  A
Sbjct: 68  GVHTASTADAVAFAEALV-VEVGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQAA 126

Query: 141 AALILQEVLD 150
           A +ILQ  LD
Sbjct: 127 ATIILQHALD 136


>gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii
           CbuK_Q154]
 gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase
 gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
          Length = 141

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 11/140 (7%)

Query: 15  PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS---FITTENIA 69
           PNQ + ++  D G KRIG+A+   G+   H    +   K     L+       I T +  
Sbjct: 2   PNQNLIALGFDFGMKRIGVAV---GQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHAN 58

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++G+P NM+GSE     + R F   +  R   +P    DERLTT+ A++   +  ++ 
Sbjct: 59  VLVVGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPLSMVDERLTTIEAKRQWYEQGLT- 116

Query: 130 KKRIQKVDSIAAALILQEVL 149
            KR Q +D+ AA LIL++ L
Sbjct: 117 -KRPQHLDNYAAKLILEQWL 135


>gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
 gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
          Length = 123

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID GTKRIGLA+ D  +     +PF + K        L   +    I   ++G PL 
Sbjct: 2   ILGIDYGTKRIGLALGD--KHLKIYKPFKIIKNDKNLIQTLKHIVKAYKIELIVLGYPLT 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G EG R    + F + ++ +++ +  V  DER TT  A+      ++S +K I   D 
Sbjct: 60  PSGKEGQRAKKVKKF-YELLKKELNIDIVLQDERYTTFEAK------SLSDEKEI---DH 109

Query: 139 IAAALILQEVLDRI 152
           I+A +IL+E  + +
Sbjct: 110 ISAYIILKEYAENL 123


>gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
 gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
          Length = 168

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTALELLSFITTENIAAFII-GL 75
           P+ ++D+G KRIG+A+ D   RF    R      +      + L+ +  E  A  ++ GL
Sbjct: 28  PLIALDIGMKRIGVAVCD---RFGISCRGVTCLMRRDHGWPQQLAKVVREYGAKSVVAGL 84

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+G+EG +    RA V  +  + + +P  F DERL+T +A++ L    +  KK  +K
Sbjct: 85  PKNMDGTEGVQAADARAAVAEL-KKTLPLPVTFQDERLSTWTAKERLYAQGLREKKVQEK 143

Query: 136 VDSIAAALILQEVL 149
           +D  AAA+IL++ L
Sbjct: 144 LDQTAAAVILEDFL 157


>gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus
           PCC 6301]
 gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase
 gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 149

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P      +D+G +RIG+A  D           +VR+        + +      +   +IG
Sbjct: 2   PYYAALGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +M+GS G +   T+ F   +  + + +P  + DERLT+  A++++  +  S  +   
Sbjct: 62  LPYSMDGSLGSQAKQTQRFATRL-SKALQLPITYVDERLTSFEAEEMIKAVGRSPSRDKG 120

Query: 135 KVDSIAAALILQEVLD 150
            +D  AAALILQ+ LD
Sbjct: 121 AIDRKAAALILQQWLD 136


>gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Megamonas hypermegale ART12/1]
          Length = 75

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R    + F   +++       +FWDERL+TV+A + L++ +VSR KR + +D 
Sbjct: 1   MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60

Query: 139 IAAALILQEVLDRI 152
           +AA  ILQ  LD +
Sbjct: 61  MAAVFILQGYLDSL 74


>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
 gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 164

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTEN---IAAFIIGL 75
            +D+GT RIG+A+SDP    A P   + R  K+      ++ S +   +   +   I+GL
Sbjct: 21  GLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVVEVIVGL 80

Query: 76  PLNMNGSEGPRVHSTRAF---VHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P  ++GS G  V   +     +   ++R  V VP  + DER+TTV AQ  L D  +S K+
Sbjct: 81  PRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDAGISVKE 140

Query: 132 RIQKVDSIAAALILQEVLDR 151
               +D  AA  ILQ  LD+
Sbjct: 141 GRSVIDQAAAVEILQTWLDQ 160


>gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
 gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
          Length = 139

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++DP R  A+    L      +    L  +I  E +   ++G P  
Sbjct: 4   IIAIDYGKKRTGIAVTDPLRIIANG---LATVSTPELYAFLQEYIQREKVDLIVMGKPTQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
           ++G     +     FV         VP  ++DER T+  A Q +I   V +K R Q    
Sbjct: 61  LSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQDKGL 120

Query: 136 VDSIAAALILQEVL 149
           VD I+A +ILQ+ +
Sbjct: 121 VDEISATIILQDFM 134


>gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis
           SH0165]
 gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase
 gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction
           endodeoxyribonuclease [Haemophilus parasuis SH0165]
          Length = 138

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GT  IG A+       A   P    +       ++   I        ++GL
Sbjct: 2   SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     + F  N ++ +  +P    DERLTTV A+  +      +  +  K
Sbjct: 62  PLNMDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+I+A LIL+   ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138


>gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 141

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 31/147 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           + + D GT  IG A+                + +T TA  L +F   + I  +       
Sbjct: 9   VIAFDFGTNSIGCAVG---------------QSITGTAQGLTTFKAQDGIPNWEEIGKLL 53

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+G+E P     R F  N ++ +  +P    DERLTTV A+  + 
Sbjct: 54  QDWKPDMLVVGLPLNMDGTEQPLTQRARKFA-NRLNGRFNLPVELQDERLTTVEAKAEIF 112

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
                +  +  KVDSI+A LIL+   +
Sbjct: 113 SRGGYKALKKDKVDSISACLILESWFE 139


>gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila
           UNI-1]
 gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila
           UNI-1]
          Length = 152

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLP 76
           I ++D G  RIGLAISDP    A  R   V   V +   A  +    T + +   I+G  
Sbjct: 5   ILAVDPGDVRIGLAISDPTGTIA--RALGVIHHVARAIDAATIAQIATEQGVVRIIVGQA 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+ +G   P+   + A +   I ++  +P   WDE  +T  AQ     M V RK+R   +
Sbjct: 63  LDDHGLPTPQGRKS-ARLAEAIQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGHL 121

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ+ L+
Sbjct: 122 DDLAAVIILQDYLE 135


>gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
 gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
          Length = 148

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G +RIG+A  D     A     +VR        +  + I    +   ++GLP   N
Sbjct: 14  GLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLSN 73

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G +    + +   +  + + +P  + DERLT+V A+Q+L    +   +    +D  A
Sbjct: 74  GELGTQARQIQKYTRRL-QKSLALPVEYVDERLTSVEAEQMLKGQKIPLSENKALIDRKA 132

Query: 141 AALILQEVLDR 151
           AALILQ+ LD+
Sbjct: 133 AALILQQWLDQ 143


>gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49]
          Length = 149

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+AI +   R A      P L R+   +   ELL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R+  +D
Sbjct: 70  HPDGTPHDMTQQAKRFG-NQLNGRFGLPVSWVDERYSSVEAEAGLRERNVRGRARVDMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]
          Length = 679

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 15/132 (11%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +DLG  R GLA+S   + F+  RP  V K +  +  L+LL     E +  FIIGLP++ +
Sbjct: 515 VDLGMSRTGLALS---KGFS-VRPLSVLKLRGQKLELQLLEIAGREEVDEFIIGLPVSDD 570

Query: 81  GSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           G E P+ +  R+    +  R      +VY+     DE  T+  A  ++IDM  S+  R  
Sbjct: 571 GKETPQSNKVRSVAGRLAARAAERGWRVYLQ----DEHGTSEEALSLMIDMGHSKSARQN 626

Query: 135 KVDSIAAALILQ 146
           ++D+ AA ++L+
Sbjct: 627 RIDAYAAMMVLE 638


>gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
           13031]
 gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
           13031]
          Length = 143

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID GTKRIG+A SDP + FA P   + R  ++    E+L    ++ I   IIG PL 
Sbjct: 9   VIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGMLEEMLR---SDEIGRVIIGYPLG 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
            NG           F+ +++     +     DE  ++  A++IL     SRK R +K  +
Sbjct: 66  GNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEKGRI 125

Query: 137 DSIAAALILQEVLD 150
           DS AA ++L E L+
Sbjct: 126 DSAAACVLLTEYLE 139


>gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway
           5J108-111]
 gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii
           CbuG_Q212]
 gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase
 gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase
 gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
 gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
          Length = 141

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 15  PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           PNQ + ++  D G KRIG+A+       A+    L  +       ++   I T +    +
Sbjct: 2   PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P NM+GSE     + R F   +  R   +P    DERLTT+ A++   +  ++  KR
Sbjct: 62  VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118

Query: 133 IQKVDSIAAALILQEVL 149
            Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135


>gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
 gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
 gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
          Length = 138

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4]
          Length = 140

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73
           ++ +   D GTK IG+AI       A  RP L  K V       E+ + IT       ++
Sbjct: 3   DKSVLGFDYGTKSIGIAIGQ--ELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVV 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+G+E       R F  N I  +  V     DERLTT  A+  L +M   +    
Sbjct: 61  GLPLNMDGTEQEMTQRARKFA-NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTK 119

Query: 134 QKVDSIAAALILQEVLD 150
            +VD+++A LI++   +
Sbjct: 120 GQVDAMSAVLIVESYFE 136


>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
 gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 138

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
           ++D+G  RIG+A SD     A P   + RKKV   +++ ++ I  EN    ++ G+P ++
Sbjct: 6   ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLVVVGIPKSL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
           +G E  +    R ++  +      +  +  DER +TV A  IL ++N +    K+++  V
Sbjct: 64  DGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121

Query: 137 DSIAAALILQEVLD 150
           D +AA++ILQ  LD
Sbjct: 122 DKVAASIILQTYLD 135


>gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 143

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I ++D+G+K IGLA S      +            Q   +L S++   N +  ++G P
Sbjct: 3   QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
            NMN + G R       +   +D  +Y  F     +  DER TT  A+ ILI  N++R+K
Sbjct: 63  KNMNNTIGERAEMVDYVIEMFLD--MYKNFNEDQIIKIDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           + +  DS+AA LIL+  L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139


>gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
 gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
          Length = 149

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP + +   D G+K IG+A        A P   +  +        L   I        II
Sbjct: 8   KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+G+E       + F  N +  +  V     DERLTT SA++ + ++   +    
Sbjct: 68  GLPLNMDGTEQYITQRAKKFA-NRLHGRFGVKIALQDERLTTASAKEFIFELGGYKALDK 126

Query: 134 QKVDSIAAALILQEVLDR 151
            K+DS++AALIL+  + +
Sbjct: 127 GKIDSVSAALILESWMSQ 144


>gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays]
 gi|194697900|gb|ACF83034.1| unknown [Zea mays]
          Length = 174

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +D+G+K +G+AISD   R A P   L R K  +   A +  + ++  +IA F++G P  
Sbjct: 27  GLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFK 86

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           + G   P   + +  +   + +      +P+ +WDE  T+   + +L  +N+      + 
Sbjct: 87  IYGQ--PCASAIQVSLAGELCKTGKLDDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKT 144

Query: 136 V-DSIAAALILQEVLDRIS 153
           + D  AA  ILQ  LD ++
Sbjct: 145 MTDKFAAVCILQGYLDNMN 163


>gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 107

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           +G+ RIG+AISDP   FA    FL  +      L LL  I   N+   +IGLP+  NG +
Sbjct: 1   MGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLALL--IRKHNVKKVVIGLPIRTNGKK 58

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
                +       + +    + F+ WDER TT  AQ  L D  +S KK+
Sbjct: 59  DREADAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107


>gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302]
 gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302]
          Length = 144

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G KR GLA++D  +  A+    L     +     L  +I  E +   +IG P  
Sbjct: 4   ILSIDYGKKRTGLAVTDSLQIIANG---LATVSTSSLIDYLKDYIAKEPVERIVIGRPTQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
            +G     +     FV+        +P  ++DER T+V A Q++ID  V +K R +    
Sbjct: 61  PDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKENKGL 120

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQ+ +
Sbjct: 121 IDEISATIILQDYM 134


>gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase
 gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica
           W22703]
          Length = 140

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GTK IG+AI                ++VT TA  L SF   +    +    
Sbjct: 3   NRTIVAFDFGTKSIGVAIG---------------QEVTGTARALTSFKAQDGTPDWQKVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLKEWQPDLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQIALQDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L D    R      VD+ +A +IL+   D
Sbjct: 107 NLFDSGGYRALDKGSVDAASAVIILESWFD 136


>gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
           301]
 gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
           2457T]
 gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046]
 gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227]
 gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str.
           8401]
 gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A]
 gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5]
 gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC
           3083-94]
 gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A]
 gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22]
 gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019]
 gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171]
 gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
 gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1]
 gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii
           ATCC 35469]
 gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1]
 gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026]
 gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
 gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9]
 gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str.
           12009]
 gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str.
           11368]
 gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str.
           11128]
 gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli
           FVEC1412]
 gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
 gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302]
 gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           107-1]
 gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           198-1]
 gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
 gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           187-1]
 gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W]
 gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           145-7]
 gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143]
 gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280]
 gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299]
 gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9]
 gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase
 gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase
 gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase
 gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase
 gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase
 gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase
 gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase
 gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase
 gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase
 gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase
 gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase
 gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T]
 gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A]
 gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5]
 gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94]
 gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A]
 gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22]
 gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019]
 gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171]
 gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
 gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1]
 gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6
           str. E2348/69]
 gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
 gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1]
 gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026]
 gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
 gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11
           str. 11368]
 gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2
           str. 12009]
 gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H-
           str. 11128]
 gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
 gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
 gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli
           FVEC1412]
 gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302]
 gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           198-1]
 gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
 gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           187-1]
 gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           107-1]
 gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W]
 gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           145-7]
 gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
 gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W]
 gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
           74-1112]
 gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
 gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
 gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
 gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
 gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
 gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
 gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180]
 gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357]
 gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11]
 gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120]
 gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
 gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
 gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
 gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
 gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii
           ECD227]
 gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
 gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143]
 gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280]
 gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299]
 gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
 gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
 gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
 gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9]
 gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
 gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
 gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
 gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
 gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
 gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
 gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
 gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
 gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
          Length = 138

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103]
 gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103]
 gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
           AJ13355]
          Length = 138

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+A+       A P   +  +  T   L++   +        ++GLP
Sbjct: 4   QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     R F  N +  +  +     DERL+TV A+  L +    R      V
Sbjct: 64  LNMDGTEQPLTARARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122

Query: 137 DSIAAALILQEVLD 150
           DS +AA+ILQ+  +
Sbjct: 123 DSQSAAIILQDWFE 136


>gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase
 gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 138

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK IG+A+       A P P L  +        +   +      A I+GLPLNM+
Sbjct: 7   GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V  +  DERL+TV A+  L +    R      VDS +
Sbjct: 67  GTEQPLTARARNFA-NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVVILESYFEQ 136


>gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
 gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
          Length = 138

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P   L  +  T     +   +T     A I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N +  +  V     DERL+TV A+  L +    R     +VDS +
Sbjct: 67  GTEQPLTARARKFA-NKLHGRFGVKIELHDERLSTVEARAGLFEHGGYRALNKGRVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str.
           REL606]
 gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50]
 gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)]
 gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str.
           REL606]
 gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli
           BL21(DE3)]
          Length = 138

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
          Length = 178

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           +  +D+G + +GLA+S+     A P   L+RK+    ++  +L   +   ++  F+IG P
Sbjct: 24  LLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRFSLVGFVIGYP 83

Query: 77  LNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           L +   +  +    + FV  +    R   + + +WDERLTT + + +L  + +   +   
Sbjct: 84  LPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKPLKIHPLQMKH 143

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D  AA  ILQ+ LD + 
Sbjct: 144 MMDKFAAVGILQDFLDNLQ 162


>gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718]
 gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718]
          Length = 138

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735]
 gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735]
          Length = 144

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G KR GLA++D  +  A+    L     +     L  +I  E +   +IG P  
Sbjct: 4   ILSIDYGKKRTGLAVTDSLQIIANG---LATVSTSSLIDYLKDYIAKEPVERIVIGRPTQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
            +G     +     FV+        +P  ++DER T+V A Q++ID  V +K R +    
Sbjct: 61  PDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKENKGL 120

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQ+ +
Sbjct: 121 IDEISATIILQDYM 134


>gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073]
 gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. W3110]
 gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89]
 gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536]
 gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
 gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS]
 gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC
           8739]
 gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638]
 gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11]
 gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88]
 gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a]
 gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989]
 gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952]
 gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B]
 gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
 gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           119-7]
 gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
 gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           115-1]
 gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
 gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           116-1]
 gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
 gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
 gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
 gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
 gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           196-1]
 gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           185-1]
 gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
 gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
 gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           146-1]
 gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
 gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736]
 gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736]
 gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605]
 gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206]
 gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271]
 gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591]
 gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase
 gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase
 gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase
 gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase
 gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase
 gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase
 gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase
 gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase
 gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase
 gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase
 gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase
 gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase
 gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
           Protein
 gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
           Protein
 gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073]
 gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12
           substr. W3110]
 gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89]
 gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536]
 gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
 gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS]
 gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739]
 gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638]
 gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11]
 gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989]
 gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88]
 gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a]
 gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82]
 gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952]
 gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
 gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042]
 gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
 gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034]
 gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           196-1]
 gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           185-1]
 gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
 gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
 gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
 gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
 gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
 gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           115-1]
 gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           116-1]
 gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
 gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           119-7]
 gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
 gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
 gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           146-1]
 gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
 gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
 gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
 gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
 gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
 gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           153-1]
 gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
 gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
 gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
 gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
 gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
 gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
 gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
 gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
 gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
 gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86]
 gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736]
 gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605]
 gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206]
 gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271]
 gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591]
 gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 138

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays]
 gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays]
          Length = 235

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 11/143 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R GLAI   GR    PRP  V R +  +  L LL     +     IIGLP++ 
Sbjct: 76  GVDLGDARTGLAI---GRGITFPRPLTVLRLRGQKLELALLDVARQQEADELIIGLPVSA 132

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +GSE P+ +  R+ V  +  +        +  DE  T+  A   +I   V +  R  K D
Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192

Query: 138 SIAAALILQEVLDRISFLESSKG 160
           + AA +IL+       F  S +G
Sbjct: 193 AYAAVMILKRY-----FTSSGRG 210


>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
           Escherichia Coli
          Length = 138

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis
           str. Paraca]
 gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 148

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G +RIG+A  D     A     +VR        +  + I    +   ++GLP   N
Sbjct: 14  GLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLSN 73

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G +    + +   +  + + +P  ++DERLT++ A+++L    +   +    +D  A
Sbjct: 74  GELGTQARQIQKYTRRL-QKSLALPVEYFDERLTSIEAEEMLKGQKIPLSENKALIDRKA 132

Query: 141 AALILQEVLDR 151
           AALILQ+ LD+
Sbjct: 133 AALILQQWLDQ 143


>gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
 gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
            +D+GT RIG+AISDP    A P    V+       ++ ++ I  EN +   ++GLP+ +
Sbjct: 19  GLDVGTVRIGVAISDPDCILATPVE-TVQATADDADVQRVAEICRENFVVEIVVGLPVAL 77

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G+      +   F   + +    +P    DER++T++A Q      V+ KK  +K+D  
Sbjct: 78  RGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGRKKIDQA 137

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 138 AAVHILQGWLD 148


>gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus
           PCC 7942]
 gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase
 gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942]
          Length = 149

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P      +D+G +RIG+A  D           +VR+        + +      +   +IG
Sbjct: 2   PYYAALGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +M+GS G +   T+ F    + + + +P  + DERLT+  A++++     S  +   
Sbjct: 62  LPYSMDGSLGSQAKQTQRFA-TRLSKALQLPITYVDERLTSFEAEEMIKAEGRSPSRDKG 120

Query: 135 KVDSIAAALILQEVLD 150
            +D  AAALILQ+ LD
Sbjct: 121 AIDRKAAALILQQWLD 136


>gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
           23834]
 gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
           23834]
          Length = 148

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+    + D G  RIG+A  D     AHP   +  +   +    + + +       F++G
Sbjct: 5   PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +GSE       R F H +  R   +P  + DERLT++ A ++L    +  +K+  
Sbjct: 65  LPFSTDGSEHEMTRLARKFGHRLNGR-FGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC
           700345]
 gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345]
          Length = 141

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
           ++ +   D GTK IG+AI       A  RP L  K V       E+ + IT       ++
Sbjct: 3   DKSVLGFDYGTKSIGIAIGQ--ELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVV 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+G+E       R F  N I  +  V     DERLTT  A+  L +M   +    
Sbjct: 61  GLPLNMDGTEQEMTQRARKFA-NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTK 119

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
            +VD+++A LI++      S+ E+  G
Sbjct: 120 GQVDAMSAVLIVE------SYFENQYG 140


>gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
           ATCC 51196]
          Length = 146

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 1/129 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G +R+G+A+SD     A P   LVR    Q    L   +        ++G PL M+
Sbjct: 2   ALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYMS 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G   P+    +AF    +  +  +P   WDERLTT  A + L        +  + VD +A
Sbjct: 62  GDISPQALKAQAFA-AWVREEFGLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQVA 120

Query: 141 AALILQEVL 149
           A LIL   L
Sbjct: 121 AVLILDGFL 129


>gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae
           Sd197]
 gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11]
 gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
 gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase
 gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase
 gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
 gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
 gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
 gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
          Length = 149

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+AI +   R A      P L R+   +   +LL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R+  +D
Sbjct: 70  HPDGTPHDMTQQAKRFG-NQLNGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVDMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str.
           K-12 substr. MG1655]
          Length = 180

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 49  AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 108

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 109 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 167

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 168 AVIILESYFEQ 178


>gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction
           resolvase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 143

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I ++D+G+K IGLA S      +            Q   +L S++   N +  ++G P
Sbjct: 3   QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
            NMN + G R       +   +D  +Y  F     +  DER TT  A+ ILI  N++R+K
Sbjct: 63  KNMNNTIGERAEMVDYVIEMFLD--MYKNFNKDQIIKIDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           + +  DS+AA LIL+  L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139


>gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC
           51142]
 gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase
 gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp.
           ATCC 51142]
          Length = 143

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     + R+   Q   +L + +    +   +IGLP +M+
Sbjct: 8   GLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVIGLPYSMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G +    + F   +    + +P  + DERLT+V A+  L       +     VD +A
Sbjct: 68  GTIGFQAKKVQKFAKRL-STALELPIEYIDERLTSVEAETHLKSQKKYSRYNKGLVDRLA 126

Query: 141 AALILQEVLDR 151
           A +ILQ+ LD+
Sbjct: 127 ATIILQQWLDQ 137


>gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
 gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
          Length = 137

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D GTKR G+A++DP +  A     ++   +      L S++ +E ++  ++G P  
Sbjct: 4   IIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISF---LKSYMVSEPVSTIVLGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+ +      +  AF+  +      +     DER T+  A Q +I   + +KKR +K  V
Sbjct: 61  MDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEKGRV 120

Query: 137 DSIAAALILQEVLDRIS 153
           D I+A LILQ  L+RIS
Sbjct: 121 DQISATLILQAYLNRIS 137


>gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 141

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID GTKR GLA++DP        P  +    T   L  L+ ++  E +   I+G P 
Sbjct: 4   ILAIDYGTKRTGLAVTDP----LQITPGALDTVPTHQLLNYLADYLGREKVETIILGKPT 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            M+ +      + +A    +      +   + DER T+V AQQ + +  + +++R +   
Sbjct: 60  QMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRDKG 119

Query: 136 -VDSIAAALILQEVLDRISFLE 156
            VD ++A +ILQ  L+ +S L 
Sbjct: 120 LVDRVSATIILQSYLESLSMLH 141


>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
           ++D+G  RIG+A SD     A P   + RKK+   +++ ++ I  EN    I+ G+P ++
Sbjct: 6   ALDIGDVRIGVARSDIMGIIASPLETINRKKIK--SVKRIAEICKENDTNLIVVGIPKSL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
           +G E  +    R ++  +      +  +  DER +TV A  IL ++N +    K+++  V
Sbjct: 64  DGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121

Query: 137 DSIAAALILQEVLD 150
           D +AA++ILQ  LD
Sbjct: 122 DKVAASIILQTYLD 135


>gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
           F0264]
 gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
           F0264]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 10/137 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLN 78
            +D+G  RIG+A SDP    A     + R  V   Q   E+LS   T+ I A   GLP +
Sbjct: 6   GLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNPVQRIKEILSDEGTKKIVA---GLPKS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135
           ++G++  +      FV  + +    +  +  DER TT  A+  L   N S+   K+R + 
Sbjct: 63  LDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYL--KNYSKKNGKERRKV 120

Query: 136 VDSIAAALILQEVLDRI 152
           VD +AA++ILQ+ LDRI
Sbjct: 121 VDMVAASIILQKYLDRI 137


>gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39]
 gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase
 gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  +     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           EDL933]
 gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. Sakai]
 gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC869]
 gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC508]
 gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. EC4024]
 gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. TW14359]
 gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str.
           CB9615]
 gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase
 gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase
 gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC869]
 gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC508]
 gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
           str. TW14359]
 gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. G5101]
 gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
           str. 493-89]
 gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
           str. H 2687]
 gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. LSU-61]
 gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           1044]
 gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           1125]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K+DS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA
           331]
 gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493]
 gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase
 gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase
 gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
           331]
 gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
          Length = 141

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 15  PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           PNQ + ++  D G KRIG+A+       A+    L  +       ++   I T +    +
Sbjct: 2   PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P NM+GSE     + R F   +   +  +P    DERLTT+ A++   +  ++  KR
Sbjct: 62  VGIPYNMDGSEQTLTFAARKFARKL-QMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118

Query: 133 IQKVDSIAAALILQEVL 149
            Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135


>gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea
           ATCC 19718]
 gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase
 gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 148

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           + + D G +RIG+AI +   R AHP    + + +T+   E ++  I        ++GL +
Sbjct: 12  VLAFDFGKRRIGVAIGEHELRMAHPLT-TIDQSMTRPRFEKIAELIEAWQPVLLVVGLSV 70

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+E       R F   + + +  +P    DER TTV A+ +L ++ V+ KK+   +D
Sbjct: 71  HADGTEHEITRLCRRFARRL-EGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRPMLD 129

Query: 138 SIAAALILQEVLD 150
            IAA  ILQ   D
Sbjct: 130 QIAAQHILQTYFD 142


>gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
 gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
          Length = 137

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  R+G+A SD     A P   L  ++V   +      +        + G PL M 
Sbjct: 5   ALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRPLTMA 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G +GP+           I     +P  F DERL++  A++IL +   S +    +VD +A
Sbjct: 65  GEDGPQADRVMGQARR-IATSCDLPLEFADERLSSQEAKRILREEGYSERDMRGRVDMVA 123

Query: 141 AALILQEVLD 150
           A+L LQ  LD
Sbjct: 124 ASLFLQAWLD 133


>gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 146

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI        +P P  V K       +LL  +       F++GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F    +  +  +  +  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQ 146
            DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135


>gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
           17393]
 gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
           17393]
          Length = 140

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A+SD  +  A+          T    ELL+FI      E +   ++G
Sbjct: 4   ILAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVGKEPVERILVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      +     FV  +  +   +P  + DER T+V A + + +  + +K R  
Sbjct: 57  LPKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQN 116

Query: 135 K--VDSIAAALILQEVLDRISFL 155
           K  VD I+A +ILQ  L+   F+
Sbjct: 117 KALVDEISATIILQSYLENKRFI 139


>gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
 gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
          Length = 149

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+AI +   R A      P L R+   +   +LL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R + +D
Sbjct: 70  HPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens
           CN-32]
 gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32]
          Length = 141

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ +   D GTK IG+AI                +++T +A  LLS    + I  +    
Sbjct: 3   SKTVLGFDFGTKSIGVAIG---------------QEITASATPLLSLKAVDGIPNWDQIG 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E    H  R F  N I+ K  V  V  DERLTT  A+ 
Sbjct: 48  DLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L ++   +     +VD+++A LI++   +
Sbjct: 107 RLFELGGFKALTKGQVDAVSAVLIIESYFE 136


>gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50]
 gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase
 gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
 gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50]
          Length = 143

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 7/139 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I ++D+G+K IGLA S      +            Q   +L S++   N    ++G P
Sbjct: 3   QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
            NMN + G R       +   +D  +Y  F     +  DER TT  A+ ILI  N++R+K
Sbjct: 63  KNMNNTIGERAEMVDYVIEMFLD--MYKNFNKDQIIRIDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           + +  DS+AA LIL+  L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139


>gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
          Length = 138

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K+DS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           110-3]
 gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
          Length = 138

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  +     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
           Broad-1]
 gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
           Broad-1]
          Length = 156

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFIIGL 75
            +D G  RIG+A SDP    A P   L   K  +  L  L  I  E      +   ++GL
Sbjct: 8   GLDPGDARIGVARSDPTGFLATP---LETVKKGRGDLARLQAIVAEIGEESTMLEVVVGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P ++ G E P     R F  ++  R   VP    DERLTTVSA+ +L D     + R   
Sbjct: 65  PRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDRRAV 124

Query: 136 VDSIAAALILQEVLD 150
           VD  AA +ILQ  LD
Sbjct: 125 VDMAAAVVILQHALD 139


>gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus
           succinogenes 130Z]
 gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase
 gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z]
          Length = 140

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 31/147 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           + + D GTK IG A+                + +T TA  L +F   + I  +       
Sbjct: 5   VIAFDFGTKSIGCAVG---------------QSITGTAQSLPAFKAQDGIPDWADIEKCL 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+G+E       R F H +  R   V   + DERLTT  A+  + 
Sbjct: 50  KEWKPDMVVVGLPLNMDGTEQDLTRRARKFGHRLNGR-FGVKVAWQDERLTTTQARTEIF 108

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +    R  +  KVDSI+A LIL+   +
Sbjct: 109 ERGGYRALKKGKVDSISACLILESWFE 135


>gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase
 gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 144

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  + S D GTK IG+AI       + P   +   K      ++ + I        I+GL
Sbjct: 5   NNLLISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYIIVGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GS        + F   +   K ++P +  DERLTT+ A+ +L      +  + + 
Sbjct: 65  PLNMDGSYQTSTIKAKKFAKQL-RNKFFMPVMMHDERLTTIEAKSVLFKKYGYKGLKKKL 123

Query: 136 VDSIAAALILQEVLDRISF 154
           +DS +A +IL   ++ I F
Sbjct: 124 IDSESAVIILDSWMNSIYF 142


>gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
 gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
 gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
 gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis
           46P47B1]
 gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis
           103P14B1]
 gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
 gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis
           12P80B1]
 gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
 gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
 gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
 gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
 gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis
           101P30B1]
          Length = 158

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D G K++G+A+ +     A P   L           LL  I    I   ++GLPLNM+
Sbjct: 9   ALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNMD 68

Query: 81  GSEG---PRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           G+E     R H   R   H + +R+  V    +DERL++  A+ I +D N       + +
Sbjct: 69  GTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALD-NGWIASSSEPI 127

Query: 137 DSIAAALILQ 146
           D IAA L+L 
Sbjct: 128 DDIAACLLLD 137


>gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1]
 gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1]
 gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
          Length = 141

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 31/149 (20%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF----- 71
           + +   D GTK IG+AI                +++T +A  LLS    + I  +     
Sbjct: 4   KTVLGFDFGTKSIGVAIG---------------QEITASATPLLSLKAVDGIPNWDQIGD 48

Query: 72  ----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                     ++GLPLNM+G+E    H  R F  N I+ K  V  V  DERLTT  A+  
Sbjct: 49  LIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKAR 107

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           L ++   +     +VD+++A LI++   +
Sbjct: 108 LFELGGFKALTKGQVDAVSAVLIIESYFE 136


>gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
           AMMD]
 gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
           MC40-6]
 gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase
 gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase
 gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD]
 gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6]
          Length = 149

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
             D G KRIG+AI +   R A      P L R+   +   +LL+    +   A ++GLP+
Sbjct: 13  GFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R + +D
Sbjct: 70  HPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor
           NM305]
 gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor
           NM305]
          Length = 140

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GT  IG A+       A   P    +       ++   I        ++GLPLN
Sbjct: 5   VLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F  N ++ +  +P    DERLTTV A+  +      +  +  KVD+
Sbjct: 65  MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKVDA 123

Query: 139 IAAALILQEVLDRIS 153
           I+A LIL+   +  S
Sbjct: 124 ISACLILESWFENQS 138


>gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
           23685]
 gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
           23685]
          Length = 140

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 31/145 (21%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GT+ IG AI                +++T +A  L SF   E I  +         
Sbjct: 8   AFDFGTRSIGCAIG---------------QELTGSARPLQSFKANEGIPDWQQIEKVLRE 52

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLPLNM+GSE P     R F  N +  +  V     DERL+TV A+  L   
Sbjct: 53  WQPDLVVVGLPLNMDGSEQPLTQLARKFA-NRLHGRFGVQIALHDERLSTVEARAHLFAD 111

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
              R     +VD+ +AALIL+   D
Sbjct: 112 GGYRALEKGRVDAASAALILESWFD 136


>gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 169

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGLPLNM 79
            +D+GT R+G+A+ DP    A P   + R     + L ++     E  A  I +GLP  +
Sbjct: 14  GVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYVGLPQTL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            G+E       RA    + D  V           DERL++VSA Q L    ++ +++ + 
Sbjct: 74  RGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAGREQRKV 133

Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
           +D +AAA ILQ  L+    +E S+G
Sbjct: 134 IDQVAAAGILQHALE----MEKSRG 154


>gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC
           6803]
 gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase
 gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803]
          Length = 152

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     +VR    Q   ++   +   N+   ++GLP  M 
Sbjct: 9   GLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTMA 68

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK----- 135
           G  G +    + F   + + ++++P  + DERL++V A+  L       +KR        
Sbjct: 69  GEIGSQAKQVQKFARRVAE-QLHLPLEYMDERLSSVEAENQL-----KARKRFSSYDKGL 122

Query: 136 VDSIAAALILQEVLD-RISFLESS 158
           +D  AA +ILQ+ LD R S L+  
Sbjct: 123 IDQQAAEIILQQWLDLRRSHLQEG 146


>gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
           20707]
          Length = 141

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I +ID GTKR GLA++DP        P  +    T   L  L+ ++  E +   ++G P 
Sbjct: 4   ILAIDYGTKRTGLAVTDP----LQITPGALDTVPTHQLLNYLADYLGREKVETIVLGKPT 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            M+ +      + +A    +      +   + DER T+V AQQ + +  + +++R +   
Sbjct: 60  QMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRDKG 119

Query: 136 -VDSIAAALILQEVLDRISFLE 156
            VD ++A +ILQ  L+ +S L 
Sbjct: 120 LVDRVSATIILQSYLESLSMLH 141


>gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2]
 gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase
 gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 142

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFI 72
           N  I +ID GTK IG AI+D       P       ++T   L+   +L  +  ENI   +
Sbjct: 5   NSKILAIDFGTKIIGTAINDINLNLCLPYC-----EITNNELKFKKILEIVEEENIKEIV 59

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           IG P   N     R      F + + +  +   +   F+DE  +T S+++ L++ NV   
Sbjct: 60  IGFPKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTS 119

Query: 131 KRIQKVDSIAAALILQEVL 149
           K  +  D IAA++IL+  L
Sbjct: 120 KLKKNKDMIAASIILENYL 138


>gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641]
 gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum
           DSM 15641]
          Length = 140

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D+G  R G+AISDP  R A P   L   +V   A      +        + GLPL 
Sbjct: 3   VLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLPLT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++GS G +    RA    + D    +P  F DERL++  A+++L +  ++ +    K+D 
Sbjct: 63  LSGSSGGQAQRIRAQAQQIAD-TSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKIDM 121

Query: 139 IAAALILQEVLDR 151
           IAA++ LQ  LDR
Sbjct: 122 IAASIFLQAWLDR 134


>gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase
 gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC
           17616]
 gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC
           17616]
          Length = 149

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+AI +   R A      P L R+   +   ELL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  + + NV  + R   +D
Sbjct: 70  HPDGTPHDMTQQAKRF-GNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTDMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1]
 gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           11V1-d]
 gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           09V1-c]
 gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           03V1-b]
 gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           01V1-a]
 gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           2503V10-D]
 gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           3008A-a]
 gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2052A-d]
 gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2053A-b]
 gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
           55195]
 gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
           143-D]
 gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
 gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           1401G]
 gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           11V1-d]
 gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           09V1-c]
 gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           03V1-b]
 gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           01V1-a]
 gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2053A-b]
 gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2052A-d]
 gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2062A-h1]
 gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           3008A-a]
 gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
           55195]
 gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
           143-D]
 gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
 gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           1401G]
          Length = 143

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 21  SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
            +D+G+K +G+A+SD  G          + +      +  +  +  E  ++ F++GLP N
Sbjct: 5   GLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGLPKN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133
           M+G+ G        +   +   K  +P  + DERLTT+ A++IL++       V+RKK I
Sbjct: 65  MDGTCGESAQRCLDYGERL-KAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARKKII 123

Query: 134 QKVDSIAAALILQEVLD 150
              D +AA LILQ  L+
Sbjct: 124 ---DQMAAVLILQNFLE 137


>gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 174

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75
            +D+GT RIG+A+S      A P   + R    K   ++ ++ L++ IT  N+   I+GL
Sbjct: 21  GVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNNVVEVIVGL 80

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P ++ G+    V   +     +  R    ++ +P    DERL+TV A Q L    VS K 
Sbjct: 81  PRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRASGVSEKS 140

Query: 132 RIQKVDSIAAALILQEVLD-RISFLESS 158
             + +D  AA  ILQ  LD R ++L  +
Sbjct: 141 GRKIIDQAAAVEILQSWLDGRTNYLHRT 168


>gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC
           23330]
          Length = 151

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 15  PNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           P Q  A + D G +RIG+A  +     AHP   +  +       ++   I     +  ++
Sbjct: 5   PTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPSCLVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132
           GLP +++G+E       R F   +  R  +   V+W DERL++V A+++L    V  +K+
Sbjct: 65  GLPSHLDGTEHEITQLARKFGRRLHGR--FALPVYWVDERLSSVYAEELLRQAQVFGRKQ 122

Query: 133 IQKVDSIAAALILQEVLD 150
             K+D +AA  ILQ   D
Sbjct: 123 KAKLDQVAAQAILQSFFD 140


>gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
 gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
          Length = 136

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 21/141 (14%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
           I +ID G KR GLA++DP +        L+   +T  A       L  ++  E +  F+I
Sbjct: 4   ILAIDYGKKRTGLAVTDPLQ--------LIASGLTTVATHDLIPYLKKYLAQEAVELFLI 55

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNM-IDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRK 130
           G P N++G      H+T   V  + I  K +  VP    DER T+  A Q +ID  + +K
Sbjct: 56  GEPKNLDGGA---THATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKK 112

Query: 131 KRIQK--VDSIAAALILQEVL 149
            R  K  VD I+A +ILQE L
Sbjct: 113 DRQNKGLVDEISATIILQEYL 133


>gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2M]
 gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2]
 gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD1]
 gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD1]
 gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2]
 gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2M]
          Length = 149

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+AI +   R A      P L R+   +   ELL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  + + NV  + R   +D
Sbjct: 70  HPDGTPHDMTQQAKRF-GNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARADMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
 gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
          Length = 140

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
            +DLG+   G++ S+ G   AH    +  K     +   ++L+ I  E     ++G PL 
Sbjct: 6   GLDLGSVTCGVSASETGL-IAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVLGYPLL 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG  GPR   +  F   +   +  +P    DER TTV A++IL+  ++SRKKR +K+D 
Sbjct: 65  LNGDVGPRAQLSEEFKEVLE-EECGLPVHLMDERFTTVEAEEILLQADISRKKRKKKIDQ 123

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LDRI 
Sbjct: 124 LAAVQILQYYLDRIG 138


>gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145]
 gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145]
          Length = 147

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I + D GT+++G+++       A+P P    K       ELL  + +     F++GLP
Sbjct: 8   QTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLP 67

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+ SE       R F   +  +     ++  DERLTT  A+  L       + +    
Sbjct: 68  LNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREARDELDHYQAQGRGKKLSA 126

Query: 137 DSIAAALILQ 146
           DSIAAAL+++
Sbjct: 127 DSIAAALLIE 136


>gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
 gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR G+A+SDP R  A     +  K + +    L  +    +++  +IG P+ 
Sbjct: 4   ILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERW---LAQYFAANDVSTIVIGKPMQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
           M+G+              +  R+ Y     VF+DER T+V A + +++  + +  R  K 
Sbjct: 61  MSGAPSETWRYVEPLAARL--RRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDKA 118

Query: 136 -VDSIAAALILQEVLD 150
            VD I+A +ILQ  ++
Sbjct: 119 LVDKISATIILQGYME 134


>gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT  IG A+       A   P    +       ++   I        ++GLPLN
Sbjct: 5   ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSE P     + F  N ++ +  +     DERLTTVSA+  + +    +  +  KVDS
Sbjct: 65  MDGSEQPLTQRAKKFA-NRLNGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123

Query: 139 IAAALILQEVLD 150
           I+A LIL+   +
Sbjct: 124 ISACLILESWFE 135


>gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
 gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
          Length = 140

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTKR GLA +DP +  A     L   +V      L  +   E +  F++G PL  +
Sbjct: 6   GIDFGTKRTGLACTDPLKIIASGLKNLSTPEVIPF---LKKYCEMEEVDTFVVGKPLQKD 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
           G+        + F+  + ++        +DER T+  A Q +I+  + +K+R  K  +D 
Sbjct: 63  GTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADKGMIDQ 122

Query: 139 IAAALILQEVLD 150
           ++A LILQ  LD
Sbjct: 123 VSATLILQSYLD 134


>gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           F]
          Length = 142

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           ++D+G+K +G+A  D   + A P        +  ++ + +   +  SF        F+IG
Sbjct: 5   ALDVGSKTLGIATGDGEFKIASPYCVISFNQYDFKQCLAELKEKTASFFYD---FKFVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P N++ ++         F+  ++        + +DE  T++ A Q+LID  +  KKR +
Sbjct: 62  MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120

Query: 135 KVDSIAAALILQEVLD 150
           K+D +AA +ILQ   D
Sbjct: 121 KIDKLAAFVILQSFFD 136


>gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
 gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
          Length = 154

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF----ITTENIAAFIIG 74
           I ++D G  R G+A++D  +  A           T   +EL+SF    ++ EN+  F++G
Sbjct: 22  IVALDYGKVRTGIAVTDELQLIASGL-------TTVKTVELISFLKKYVSEENVEKFVVG 74

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P  M+ +        + F+ ++    + +P    DER T+  A Q +ID  + +K+R  
Sbjct: 75  EPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIKKKQRKN 134

Query: 135 K--VDSIAAALILQEVLDR 151
           K  VD I+A LILQ  L++
Sbjct: 135 KALVDEISATLILQAYLNK 153


>gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
 gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
          Length = 138

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GTK IG+A+       A P   +  +       E+ + +        ++GLPLN
Sbjct: 4   IMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGLPLN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G++     + R F + +  R   +  +  DERLTTV A+  L +    R  +  +VD+
Sbjct: 64  MDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQVDA 122

Query: 139 IAAALILQEVLDRI 152
           +AAALIL+   + +
Sbjct: 123 LAAALILESYFETL 136


>gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
 gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
          Length = 140

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 7/142 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GT  IG A+       A   P    +       ++   I        ++GLPLN
Sbjct: 5   VLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F  N ++ +  +P    DERLTTV A+  +      +  +  KVD+
Sbjct: 65  MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKVDA 123

Query: 139 IAAALILQEVLDRISFLESSKG 160
           I+A LIL+      S+ E+  G
Sbjct: 124 ISACLILE------SWFENQTG 139


>gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC
           7002]
 gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase
 gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday
           junction resolvase [Synechococcus sp. PCC 7002]
          Length = 144

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 17  QPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           +P+A++  D+G KRIG+A  D     A     + R  +      +  +I   +I   ++G
Sbjct: 2   KPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  M+GS G +   T+ F   + +    +P  + DERLT+V A+  L       +++  
Sbjct: 62  LPYAMDGSLGKQAKQTQKFARKLAE-AFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA +ILQ+ L+
Sbjct: 121 LVDQRAAQIILQQWLE 136


>gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4]
 gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7]
 gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3]
 gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4]
 gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7]
 gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3]
          Length = 141

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIG 74
           + +   D GTK IG+AI    +  A   P L  K V       E+   I        ++G
Sbjct: 4   KTVLGFDFGTKSIGVAIGQ--QITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+E    H  R F  N ++ K  V  V  DERLTT  A+  L ++   +     
Sbjct: 62  LPLNMDGTEQEMTHRARKFA-NRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKG 120

Query: 135 KVDSIAAALILQEVLD 150
           +VD+++A LI++   +
Sbjct: 121 QVDAVSAVLIVESYFE 136


>gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1]
 gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter
           aurescens TC1]
          Length = 196

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 9/137 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGLPLNM 79
            +D+GT R+GLA+ DP    A P   + R     + + +L     +  A  I +GLP  M
Sbjct: 17  GVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFVGLPRTM 76

Query: 80  NGSEGPRVHSTRA------FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
            G E  R  +  A       V  ++   + VP    DERL+TV+A + L    +S K   
Sbjct: 77  KGEE--RASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSSKNHR 134

Query: 134 QKVDSIAAALILQEVLD 150
           + VD +AAA ILQ  +D
Sbjct: 135 KVVDQVAAAGILQHAID 151


>gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           Z2491]
 gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase
 gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 151

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G++    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  IL    +
Sbjct: 123 SVLDQVAAQAILHGFFE 139


>gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 139

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           I SID G KR GLA++DP +        +     T + ++L  F+      E +   I+G
Sbjct: 4   ILSIDYGKKRTGLAVTDPMQ-------IIANGLTTVSTVDLWDFLQNYCKKEGVERIIMG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P   NG     +     F +        +P  ++DER T+V A + +ID  V +K R +
Sbjct: 57  KPTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRRE 116

Query: 135 K---VDSIAAALILQEVL 149
               VD ++A +IL++ +
Sbjct: 117 NKGLVDEVSATIILEDWM 134


>gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           R(low)]
 gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase
 gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           R(high)]
          Length = 142

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           ++D+G++ +G+A  D   + A P        +  R+ + +   +  SF        F+IG
Sbjct: 5   ALDVGSRTLGIATGDGEFKIASPYCVISFNQYDFRQCLAELKEKTASFFYD---FKFVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P N++ ++         F+  ++        + +DE  T++ A Q+LID  +  KKR +
Sbjct: 62  MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120

Query: 135 KVDSIAAALILQEVLD 150
           K+D +AA +ILQ   D
Sbjct: 121 KIDKLAAFVILQSFFD 136


>gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           053442]
 gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase
 gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis
           053442]
          Length = 151

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G++    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  IL    +
Sbjct: 123 SVLDQVAAQAILHGFFE 139


>gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542]
 gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM
           10542]
          Length = 167

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--------TALELLSFITTE-NIAAF 71
            +D+G+ R+G+A+SDP    A P   L R  VT         T L  L+    E  +   
Sbjct: 14  CVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAEQVVERGVKVV 73

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
            +GLP +++G+EG    S RA+   +      VP    DER++TV+A Q L     + +K
Sbjct: 74  YVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQALHASGRAGRK 133

Query: 132 RIQKVDSIAAALILQEVLD 150
               VD +AA +ILQ  LD
Sbjct: 134 HRAVVDQVAAVVILQSALD 152


>gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           MC58]
 gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           FAM18]
 gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha14]
 gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           ATCC 13091]
 gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase
 gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase
 gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha14]
 gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha153]
 gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha275]
 gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           ATCC 13091]
 gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           alpha710]
 gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568]
 gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis
           OX99.30304]
 gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190]
 gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399]
 gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579]
 gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis
           ES14902]
 gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385]
 gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136]
 gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
 gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
          Length = 151

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G++    H +R F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  IL    +
Sbjct: 123 SVLDQVAAQAILHGFFE 139


>gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7
           single-cell isolate TM7c]
          Length = 134

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +D+G KRIG+A++D G + A P   L   +V  T +E +L     EN    ++G P N 
Sbjct: 7   CLDVGEKRIGVAVADLGVKIAIP---LTTIEVDGTEIEQILRLYGRENARTLVVGYPRNQ 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
            G    +      FV  +   + Y+   F DE LT+V A+Q L     SR +   K  +D
Sbjct: 64  QGETTAQTVFVEEFVKPL---EEYINIEFQDESLTSVQAEQRL----KSRGQNYTKGDID 116

Query: 138 SIAAALILQEVLD 150
           S AA +ILQ+ ++
Sbjct: 117 SEAATIILQDYME 129


>gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
 gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
          Length = 145

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS---------- 61
           +L   Q     D G KR+G+A               VR +++  AL +L+          
Sbjct: 3   TLTTAQRYLCFDFGEKRLGVATG-------------VRTQMSSQALTVLAVTNDQPDWKL 49

Query: 62  ---FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
               I   N+ AF++GLPLNM+ SE       R F  N +  +  +P    DERL++   
Sbjct: 50  IENLIREWNVEAFVVGLPLNMDDSEQELTQKARKFA-NRLHGRFGLPTHLHDERLSSAEV 108

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
           +  L ++   +K +   +D+ AA LIL+   ++
Sbjct: 109 KDYLYEIGGYKKLKQNPIDAYAAELILKSFFEQ 141


>gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 143

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGL 75
           P+  ID G +RIG+A+   G     P+    +R        +  + I  E    A ++GL
Sbjct: 7   PLLGIDFGERRIGIAVL--GESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+M+GSEG  V   R F  ++  R+  +P  + DERL++ +A  +L +  +S KKR + 
Sbjct: 65  PLHMDGSEGFMVGRVRKFAESL-QRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGRL 123

Query: 136 VDSIAAALIL 145
           +D  AA  IL
Sbjct: 124 LDQAAACEIL 133


>gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase
 gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 161

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           ++D+G  RIGLA SDP    A P   + R       +  +  +  E +    ++GLPL +
Sbjct: 8   AVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLAL 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G           F   + D    +     DERL+TVSAQ  L       +K+   +D +
Sbjct: 68  SGRATASTDDAEGFARRLAD-ATEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQV 126

Query: 140 AAALILQEVLD 150
           AA +ILQ  L+
Sbjct: 127 AAVIILQHALE 137


>gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca
           volvulus]
          Length = 136

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+G K+IG+A SD  +  A       RK +++  L  L+ +  EN A + +IGLPL  
Sbjct: 2   CLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKD-LGYLNRVFKENEAGSVVIGLPLET 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           N        +   F   M+ +K  V     DE L+T  A   L    VS  K  +  D I
Sbjct: 61  NRKSSEWYETIIQFATKMV-KKYKVNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119

Query: 140 AAALILQEVLDRISFLE 156
           +A +ILQ  LD+I+ ++
Sbjct: 120 SACIILQRTLDKINAIK 136


>gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase
 gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase
 gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
           PB1/+]
          Length = 140

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GTK IG+AI                ++VT TA  L +F   +    +    
Sbjct: 3   NRTIIAFDFGTKSIGVAIG---------------QEVTGTARALTAFKAQDGTPDWQQVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLKEWQPNLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQIALQDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L D    R      VD+ +A +IL+   D
Sbjct: 107 NLFDRGGYRALDKGSVDAASAVIILESWFD 136


>gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
 gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
          Length = 145

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 31/159 (19%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           + + LK    +   D GTK IG+A                 + +T TA  L +    + I
Sbjct: 1   MTEPLKSPSNLLGFDFGTKSIGVATG---------------QMITATAQPLSAIKANDGI 45

Query: 69  AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113
             +               ++GLPLNM+GSE P     + F  N ++ +  V     DERL
Sbjct: 46  PNWDIVEKVIRDWMPDLIVVGLPLNMDGSEQPITQRAKKFA-NRLNGRFGVKVALQDERL 104

Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           TT SA++ +      +     K+DS++AALIL+  ++  
Sbjct: 105 TTASAKEFIFTHGGYKALEKGKIDSVSAALILESWMENF 143


>gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
 gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
          Length = 137

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  R+G+A+SD     A P   L  ++V   A      +        + GLP +
Sbjct: 3   VVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLPKS 62

Query: 79  MNGSEGPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           ++G+ G +    T+   H  I     +P  F DERL++  A++IL       K+    +D
Sbjct: 63  LDGACGAQAEKITQQAQH--IAACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHID 120

Query: 138 SIAAALILQEVLD 150
            IAA+L LQ  LD
Sbjct: 121 MIAASLFLQAYLD 133


>gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens
           DSM 45100]
          Length = 192

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+GT RIGLA+SDP    A P   +  +       ++   +    +   IIGLP+ + 
Sbjct: 45  GIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVVEVIIGLPVALR 104

Query: 81  GSEGPRVHSTRAFV---HNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           G+        +AF    H+ + ++ +  +P    DER++TV+A   +    V+ KK  ++
Sbjct: 105 GNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHASGVNVKKGRKR 164

Query: 136 VDSIAAALILQEVLD 150
           +D  AA  ILQ  LD
Sbjct: 165 IDQAAAVHILQGWLD 179


>gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10]
 gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua]
 gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516]
 gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides
           F]
 gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
 gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola]
 gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1]
 gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis YPIII]
 gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92]
 gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
 gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
 gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
 gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
 gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase
 gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase
 gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase
 gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase
 gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase
 gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase
 gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase
 gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10]
 gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516]
 gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua]
 gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F]
 gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
 gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola]
 gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
           YPIII]
 gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
 gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
 gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
 gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
 gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
 gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
 gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 140

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GTK IG+AI                ++VT TA  L +F   +    +    
Sbjct: 3   NRTIIAFDFGTKSIGVAIG---------------QEVTGTARALTAFKAQDGTPDWQQVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLKEWQPNLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQVALQDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L D    R      VD+ +A +IL+   D
Sbjct: 107 NLFDRGGYRALDKGSVDAASAVIILESWFD 136


>gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
 gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
          Length = 138

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
 gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase
 gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 142

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID GTK  G+A+SD    FA P+  ++     +  ++L+  I  E+  A ++GLP+  +
Sbjct: 5   AIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLFD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSI 139
            SE       R F+  +   K+ +P     E L++  A+  L  +   RK +I+ V D  
Sbjct: 65  NSETLITRQVRNFIKRL-KHKIMLPVFLMKEILSSYEAKLDLQSVGY-RKNKIKSVLDQQ 122

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LD+
Sbjct: 123 AAVRILQSFLDQ 134


>gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp.
           JA-3-3Ab]
 gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase
 gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
           JA-3-3Ab]
          Length = 159

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D+G +RIG+A SD     A     + R+ + +   ++ ++I        ++G+PL  +G
Sbjct: 19  LDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLADG 78

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
           S G +    + FV   +   V +P V  +E L+TV A+  L    +  K +   +D  +A
Sbjct: 79  SVGSQARKVQRFVR-ALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQSA 137

Query: 142 ALILQEVLDRISFLESSKG 160
           A+ILQ  LD   + +SSK 
Sbjct: 138 AVILQTWLDERRYSQSSKA 156


>gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma
           proteobacterium HTCC2143]
 gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma
           proteobacterium HTCC2143]
          Length = 153

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IGLAI       A+P   L  K       ++   I        +IGLPLN
Sbjct: 14  VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS        + F  N +  +  +P    DERL++  A+  +I    SR  +   VDS
Sbjct: 74  MDGSFSELSRRAKKFA-NRLHGRFGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132

Query: 139 IAAALILQEVL 149
           +AA +IL+  L
Sbjct: 133 LAAKIILESWL 143


>gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
 gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
           AFC27]
 gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase
 gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
 gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
           AFC27]
          Length = 152

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 15  PNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           P++P  +   D G + IG+A+       A+P   L   +      ++   I   N    I
Sbjct: 10  PSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKK 131
           +GLPLNM+ SE     + R F H +  R  Y   V W DERL+TV A++ L ++  S   
Sbjct: 70  VGLPLNMDQSEQFLTKAARRFGHRLHGR--YGLAVEWVDERLSTVEARERL-NIKSSASG 126

Query: 132 RIQKVDSIAAALILQEVL 149
           R Q +D +AA  ILQ  L
Sbjct: 127 RRQGIDQMAAQCILQTWL 144


>gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
 gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
          Length = 138

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK IG+A        A P P L  +        +   +      A I+GLPLNM+
Sbjct: 7   GFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V  +  DERL+TV A+  L +    R      VDS +
Sbjct: 67  GTEQPLTARARNFA-NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVVILESYFEQ 136


>gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii
           ATCC 27126]
          Length = 143

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKV-TQTALELLSFITTENIAAFII 73
           N+ + + D GTK IG+A+       A P   L  R  +   T +E L       I   ++
Sbjct: 6   NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIV--VV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           GLPLNM+G+E       R F + +  R KV V     DERLTT  A+ +L ++   +K  
Sbjct: 64  GLPLNMDGTEQEMTQRARKFANRLHGRFKVAVDTC--DERLTTTDAKAMLFELGGYKKLT 121

Query: 133 IQKVDSIAAALIL 145
             KVDS++A +I 
Sbjct: 122 KDKVDSVSACVIF 134


>gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
 gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
          Length = 159

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 15  PN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           PN  + +   D GT RIG+AI       A P   L   +       +   +       F+
Sbjct: 18  PNIAKTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFV 77

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+GSE       R F   +  R    P+   DERL++  A+  +I     R  +
Sbjct: 78  VGLPLNMDGSENEMCQRARKFAKRLHGR-YNRPYHMMDERLSSYDAKGQVIAQGGHRNFK 136

Query: 133 IQKVDSIAAALILQ 146
              VD +AA LI++
Sbjct: 137 ENSVDGLAAQLIIE 150


>gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 140

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GTK IG AI                +++T TA  L +F   +    +    
Sbjct: 3   NRTIIAFDFGTKSIGAAIG---------------QEITGTARALAAFKAQDGTPDWQKIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+GSE P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLKEWQPDLVVVGLPLNMDGSEQPLTERARKFA-NRLHGRFGVKIDLHDERLSTVEARS 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    R      VDS +A +IL+   ++
Sbjct: 107 HLFDRGGFRALDKGSVDSASAVVILESWFEQ 137


>gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM
           265]
 gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
           265]
          Length = 142

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTKRIGLA++DP R FA P     R+ + Q ALE +     + IA  ++G PL+
Sbjct: 6   LVGIDYGTKRIGLAVADPLRIFARPVGTFSREGL-QGALEEIE--RQDGIATLVVGYPLS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
             G           F+  + +    V     DE  ++  A  IL     SRK R +K  +
Sbjct: 63  SGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKKGRL 122

Query: 137 DSIAAALILQEVLDRIS 153
           D+ AA ++L   L+  S
Sbjct: 123 DTAAACVLLTRYLEESS 139


>gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 124

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            +IGLP ++NG EGP     R F   +  R   V     DER+TTV+A   L    VS K
Sbjct: 28  VVIGLPRSLNGREGPAAAKVRTFARELARRVQPVSVRLVDERMTTVTAAHGLRASGVSSK 87

Query: 131 KRIQKVDSIAAALILQEVLD 150
           K    VD  AA +ILQ  L+
Sbjct: 88  KGRSVVDQAAAVVILQSALE 107


>gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
 gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
          Length = 142

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ + + D GTK IGLAI                ++VT TA  L SF   +    +    
Sbjct: 3   NRTVFAFDFGTKSIGLAIG---------------QEVTGTARPLTSFKAQDGTPDWQKIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLKEWLPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVQVELHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    R      VD+ +A +IL+   ++
Sbjct: 107 DLFDRGGFRALDKGSVDAASAVIILESWFEK 137


>gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
           MED134]
 gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
           MED134]
          Length = 163

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR G+A++D  +  A     +  K + +    L +++  E + A +IG P  
Sbjct: 31  IIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKF---LATYLAEEKVEAMVIGEPKR 87

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN            F  ++  +   +  +  DER T+  A Q +ID  + +KKR  K  V
Sbjct: 88  MNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIGKKKRQNKALV 147

Query: 137 DSIAAALILQEVL 149
           D I+A +ILQ+ L
Sbjct: 148 DQISATIILQDYL 160


>gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 153

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G KRIG+A        AHP   L      Q    + + I        ++G
Sbjct: 8   PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E       R F   + +R   +P  F DER T++ A+ +L +  V  +K+  
Sbjct: 68  LPVHSDGTEHELTRLARKFGRRLHER-FALPVYFADERHTSLLAESLLAEAQVFGRKQKS 126

Query: 135 KVDSIAAALILQEVLD 150
            +DS+AA +IL +  D
Sbjct: 127 VLDSVAAQVILFDFFD 142


>gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
 gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase
 gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
          Length = 146

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 30/146 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-------------- 66
           S DLGTK  G AISD               +++  ALE + F+  +              
Sbjct: 5   SFDLGTKTCGFAISDI-------------LEISANALETIRFVENDFNAVIVKVKEIIKM 51

Query: 67  ---NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
              +I AF++G PL  NGS+  R      F   + +    +     DE  +T+ AQ+IL 
Sbjct: 52  YQNSIDAFVLGYPLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILK 111

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149
           D  +S KK   K D+++A +IL + L
Sbjct: 112 DAKLSNKKTKSKKDTVSAVIILNDFL 137


>gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
 gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
          Length = 133

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D G+ R G A+SDP    A P   + R    +    L++ +    +   ++GLPL 
Sbjct: 3   VLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLPLG 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           ++G++  +    RAF   + +     +P   +DER TTV A+++            +  D
Sbjct: 63  LSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRESED 113

Query: 138 SIAAALILQEVLDR 151
           S AAA++L+  L R
Sbjct: 114 SRAAAVLLEGWLVR 127


>gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 143

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG+A+       A P P L  +        +            ++GLPLN
Sbjct: 9   VLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGLPLN 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F  N +  +  V     DERLTT  A+ +L ++   +K    KVDS
Sbjct: 69  MDGTEQEMTQRARKFA-NRLHGRFRVAVETCDERLTTTDAKSMLFELGGYKKLTKDKVDS 127

Query: 139 IAAALIL 145
           ++A +I 
Sbjct: 128 VSACVIF 134


>gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
           29453]
 gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
           29453]
          Length = 154

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G  RIG+A  +     AHP   +  +   +  + +   IT       ++GLP++ +
Sbjct: 17  AFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVGLPVHAD 76

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E       R F H + + +  +P  + DER +++ A+++L    V  KK    +D +A
Sbjct: 77  GTEHEVTALARKFGHRL-NARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKAVLDQVA 135

Query: 141 AALILQEVLD 150
           A  ILQ   D
Sbjct: 136 AQAILQSFFD 145


>gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis
           29755]
 gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis
           29755]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 31/153 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           +Q + + D GT  IG A+                + +T TA  L +F   + I  +    
Sbjct: 2   SQTVLAFDFGTNSIGCAVG---------------QSITGTAQGLSAFKAQDGIPNWEQIG 46

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     + F   +  R   +P    DERLTTV A+ 
Sbjct: 47  KVIAQWQPDLLVVGLPLNMDGTEQPLTQRAKKFAKRLNGR-FNLPVELQDERLTTVEAKS 105

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            +      +  +  KVD+I+A LIL+   ++ S
Sbjct: 106 EIFTRGGFKALKKGKVDAISACLILESWFEQQS 138


>gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+G K+IG+A SD  +  A       R+ +++  L  L+ +  EN A + +IGLP  +
Sbjct: 2   CLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKD-LGYLNRVLKENEAGSMVIGLPFTI 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--IDMNVSRKKRIQKVD 137
           +  E         F + +I +K  V     DE L+T  A   L    +++++ K+I   D
Sbjct: 61  DEQETEWCKVIIQFANKII-KKCKVHIYLQDESLSTSLATHALKITGISITKSKKID--D 117

Query: 138 SIAAALILQEVLDRIS 153
            IAA +ILQ  LD+I+
Sbjct: 118 KIAACIILQRTLDKIN 133


>gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146]
 gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase
 gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 140

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 31/147 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GT+ IG AI                +++T +A  L SF   + +  +       
Sbjct: 6   ILAFDFGTRSIGCAIG---------------QELTGSARPLQSFKANDGVPDWQQIEKVL 50

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+GSE P     R F  N +  +  V     DERL+TV A+  L 
Sbjct: 51  REWQPDLVVVGLPLNMDGSEQPLTQQARKFA-NRLHGRFGVQIALQDERLSTVEARAHLF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
                R     +VD+ +AALIL+   +
Sbjct: 110 AGGGYRALEKGRVDAASAALILESWFE 136


>gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans
           WP3]
 gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans
           WP3]
          Length = 140

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73
           ++ +   D GTK IG+AI    +  A  RP L  K V       E+ + IT       ++
Sbjct: 3   SKTVLGFDYGTKSIGIAIGQ--QLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVV 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+G+E       + F  N ++ +  V  V  DERLTT  A+  L +M   +    
Sbjct: 61  GLPLNMDGTEQDITLRAKKF-GNRLNGRFGVKVVTQDERLTTADAKARLFEMGGYKALTK 119

Query: 134 QKVDSIAAALILQEVLD 150
            +VD+++A LI++   +
Sbjct: 120 GQVDAMSAVLIIESYFE 136


>gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis
           MR-1]
 gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase
 gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis
           MR-1]
          Length = 141

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIG 74
           + +   D GTK IG+A+    +  A   P L  K V       E+   I        ++G
Sbjct: 4   KTVLGFDFGTKSIGVAVGQ--QITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+E    H  R F  N ++ K  V     DERLTT  A+  L ++   +     
Sbjct: 62  LPLNMDGTEQEMTHRARKFA-NRLNAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKG 120

Query: 135 KVDSIAAALILQEVLD 150
           +VD+++A LI++   +
Sbjct: 121 QVDAVSAVLIIESYFE 136


>gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G  R+G+AISDP +  A P    +  +      EL       NI   +IG PL+
Sbjct: 3   ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQGYNIEKVVIGYPLS 61

Query: 79  -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
            ++  +          +   I+ +  V  V WDER +T + ++++  ++N  RKK+I  +
Sbjct: 62  KLHPDQKDEKLKKIDEISEKIESRYNVEIVKWDERFSTKAVERVIDEELNWKRKKKI--I 119

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 120 DKVAAVYILQGYLD 133


>gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SD     A P   + RKKV ++   +       N  + ++G+P +++
Sbjct: 6   ALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGIPKSLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137
           G E  +    R ++  +      +  +  DER +TV A  IL D+N +    K+++  VD
Sbjct: 65  GEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRKV--VD 122

Query: 138 SIAAALILQEVLD 150
            +AA++ILQ  LD
Sbjct: 123 KVAASIILQTYLD 135


>gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae
           T7901]
 gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 146

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +  + I + D GT+ IG+A+     + A   P L  K       +L    +       ++
Sbjct: 5   RSEETILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+NM+GSE       R F  N ++ +      F+DERLTT +A++           R 
Sbjct: 65  GLPVNMDGSEMEMTRRARKF-GNRLNGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRA 123

Query: 134 QKVDSIAAALILQ 146
           + VDSIAA LIL+
Sbjct: 124 KPVDSIAARLILE 136


>gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
 gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum
           ATCC 33693]
 gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
 gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A SD     A P   + RKKV ++   +       N  + ++G+P +++
Sbjct: 6   ALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGIPKSLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137
           G E  +    R ++  +      +  +  DER +TV A  IL D+N +    K+++  VD
Sbjct: 65  GEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRKV--VD 122

Query: 138 SIAAALILQEVLD 150
            +AA++ILQ  LD
Sbjct: 123 KVAASIILQTYLD 135


>gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155]
 gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185]
 gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195]
 gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223]
 gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
 gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
 gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155]
 gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185]
 gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195]
 gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223]
 gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
 gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
 gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
          Length = 141

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ +   D GTK IG+AI                +++T +A  LLS    + I  +    
Sbjct: 3   SKTVLGFDFGTKSIGVAIG---------------QEITASATPLLSIKAVDGIPNWDQIG 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E    H  R F  N I+ K  V     DERLTT  A+ 
Sbjct: 48  DLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFKVKIATQDERLTTTDAKA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L ++   +     +VD+++A LI++   +
Sbjct: 107 RLFELGGFKALTKGQVDAVSAVLIIESYFE 136


>gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
           3776]
 gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
           3776]
          Length = 199

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D G KR+GLAIS   +  A P     RK  +       +      +A  ++GLPL+ +G
Sbjct: 32  VDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAGLVVGLPLHTSG 91

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
            E       R F    + R   +P  FWDER T+VSA+ ++    V
Sbjct: 92  EESELSREVRQF-GEWLARCTNLPLRFWDERYTSVSAELLMWQDGV 136


>gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 175

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 19/148 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+GT RIG+A+SD   R A P   + R+   + + +     LL+ I+   I   ++GL
Sbjct: 21  GLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAIVEIVVGL 80

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV-------------FWDERLTTVSAQQIL 122
           P ++ G+    V   +     +  R++  PF                DERLTTV+A   L
Sbjct: 81  PRDLQGNGSASVKHAKEIAFRL-KRRLNKPFAPDPTPPHPVPVVRMGDERLTTVAATTAL 139

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
               VS KK    +D  AA  ILQ  LD
Sbjct: 140 RASGVSEKKGRAVIDQAAAVEILQSWLD 167


>gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella
           insecticola LSR1]
 gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella
           insecticola LSR1]
          Length = 140

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG+AI       A     L  +      L++   +        ++GL
Sbjct: 3   NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N +  +  V     DERL+TV+A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTSRARKFA-NRLHSRFNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121

Query: 136 VDSIAAALIL 145
           VD+ +AA+IL
Sbjct: 122 VDAASAAVIL 131


>gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby]
 gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella
           pneumophila str. Corby]
          Length = 142

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G KRIG+A+       A P   +  K        +   IT  N  A I+GLP  ++
Sbjct: 11  GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
             E     + R F   +  ++  +P    DERL+TV A+  L +    R+ +  +VDSIA
Sbjct: 71  DRELYTTSAARCFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 129

Query: 141 AALILQEVLDR 151
           A +IL++ L +
Sbjct: 130 ACVILEQWLQQ 140


>gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae
           D-4968]
 gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150]
 gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae
           D-4968]
 gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150]
          Length = 139

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+      D G KRIG+A+       A P   L  +        +   I   +  A ++G
Sbjct: 2   PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P  ++GSE       R F   +  R V +P    DERL+TV+A++ L      RK +  
Sbjct: 62  IPTCIDGSELYTTVPARRFAQELHKRFV-LPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120

Query: 135 KVDSIAAALILQEVLDR 151
           +VDS+AA +IL++ L  
Sbjct: 121 EVDSVAACVILEQWLQH 137


>gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase
 gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 139

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GT+ IG AI                +++T TA  L SF  T+ I  +    
Sbjct: 3   NRTIMAFDFGTRSIGAAIG---------------QEITGTARALTSFKATDGIPNWGQIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      I+GLPLNM+G+E       R F  N +  +  V     DERLTTV A+ 
Sbjct: 48  KLLKEWQPDLVIVGLPLNMDGTEQFVTVQARKFA-NRLHGRFGVQVQLQDERLTTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    +     KVD+ +A +IL+   ++
Sbjct: 107 HLFDRGGYKALNKGKVDATSAVIILESWFEQ 137


>gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 174

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75
            +D+GT RIG+A+S      A P   + R    K   ++ ++ L++ IT  ++   I+GL
Sbjct: 21  GVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNDVVEVIVGL 80

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P ++ G+    V   +     +  R    ++ +P    DERL+TV A Q L    VS K 
Sbjct: 81  PRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRASGVSEKS 140

Query: 132 RIQKVDSIAAALILQEVLD-RISFLESS 158
             + +D  AA  ILQ  LD R ++L  +
Sbjct: 141 GRKIIDQAAAVEILQSWLDGRTNYLHRT 168


>gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM
           16511]
 gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM
           16511]
          Length = 130

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           IA++D+G KRIG+AIS P  R   P+  + R+   Q A EL  F+    +   ++GLP  
Sbjct: 2   IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
              SE       R FV ++++    +   + DE  ++  A++ +      R+KR  ++DS
Sbjct: 61  -GSSEEEMERRIRHFV-SLLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116

Query: 139 IAAALILQEVLDR 151
           +AA +IL+  L+R
Sbjct: 117 LAAQIILERWLER 129


>gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
           15434]
 gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
           15434]
          Length = 160

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D+G  R+G+A  D     A P   L R +      E    +        ++GLP+ ++
Sbjct: 10  AFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQLS 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G         R +   +  R   VP    DERL+TVSA Q L       K     VD  A
Sbjct: 70  GGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQAA 129

Query: 141 AALILQEVLD 150
           A +IL++ L+
Sbjct: 130 AVVILEQALE 139


>gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
           12112]
 gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
           12112]
          Length = 142

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  RIG+A SD    FA     ++ + +T     +   I +E + A ++GLP   +
Sbjct: 6   GLDIGDVRIGVAKSDGLAMFASSYE-VIDRNITDPFERIKEIINSEKVIALVLGLPKTKD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRK---KRI 133
           G    +V     FV  +   K+++P      + DER TT  A+  L   N S+K   +R 
Sbjct: 65  GQNSIQVEKIERFVSEL---KLFIPENLPIHYIDERYTTKEAEYYL--KNFSKKNGKERR 119

Query: 134 QKVDSIAAALILQEVLDR 151
           + VD +AA +ILQ  LD+
Sbjct: 120 KVVDMVAAQIILQNFLDK 137


>gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4]
 gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4]
          Length = 139

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+AI       A P   L          E+ + I        ++GLPLN
Sbjct: 6   VLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F  N I  +  V     DERLTT  A+  L +M   +     +VDS
Sbjct: 66  MDGTEQEMTQRARKFA-NRISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKGQVDS 124

Query: 139 IAAALILQEVLDRI 152
           ++A LI++   + +
Sbjct: 125 MSAVLIIESYFENL 138


>gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia
           vietnamiensis G4]
 gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase
 gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4]
          Length = 149

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+A+ +   R A      P L R+   +   ELL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R   +D
Sbjct: 70  HPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTDMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+  D +S  E
Sbjct: 129 AEAARVILQQYFDELSDHE 147


>gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
 gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
          Length = 148

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GT  IG+A+       A     L  +      L++   I      AFI+G+PLNM+
Sbjct: 8   GFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPLNMD 67

Query: 81  GSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---QK 135
           G+E       R F + +    RK + P    DERL+T  A Q L   +   K+ +   Q+
Sbjct: 68  GTETILAPRARKFGNRLTGRFRKPWFPV---DERLSTREAWQALESQHQLHKRALRGNQR 124

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           VD++AAALIL       S+LES K
Sbjct: 125 VDAVAAALILG------SWLESHK 142


>gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
 gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
          Length = 135

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID G KR G+A++D  +  A      VR   T   ++ L  ++  EN+  F+IG P 
Sbjct: 4   ILAIDYGKKRTGIAVTDEMQLIASGLT-TVR---THDLIKFLKEYVAKENVELFLIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MN          + F+  +      +P    DER T+  A Q +ID  + +K+R  K  
Sbjct: 60  QMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNKSL 119

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQ  L
Sbjct: 120 IDEISATIILQSYL 133


>gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 139

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG A+       A   P    +        +   I     A  ++GLPLN
Sbjct: 5   VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F   +  R   +P    DERLTT  A+  +      R     KVD 
Sbjct: 65  MDGTEQPLTLRAKKFAKRLHGR-FNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVDG 123

Query: 139 IAAALILQEVLDRIS 153
           I+A LIL+   +  +
Sbjct: 124 ISACLILESWFENYA 138


>gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG
           18818]
 gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 140

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D+G KRIGLA++  G     P   ++RK   Q + EL   + T  I   ++GL
Sbjct: 3   NKKILACDVGLKRIGLAVTQLG--IILPIEPIIRKNRNQASKELSEILKTREIEILVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +G E     + +  +H +          + DE  T++ A Q    M V  + +IQK
Sbjct: 61  P---SGGEAGHSDTRKRILHFVGLVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117

Query: 136 ---VDSIAAALILQEVLD 150
              +DS++A LIL+  L+
Sbjct: 118 DGRLDSLSATLILERFLE 135


>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
           Yqgf From Escherichia Coli, A Hypothetical Protein
 gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
           Yqgf From Escherichia Coli, A Hypothetical Protein
          Length = 138

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG+A+       A P P +  +  T     +   +        I+GLPLN
Sbjct: 5   LXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVDS
Sbjct: 65  XDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123

Query: 139 IAAALILQEVLDR 151
            +A +IL+   ++
Sbjct: 124 ASAVIILESYXEQ 136


>gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
 gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
          Length = 199

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+GT R+G+A+ D     A P   L R     T + +L+ + +E       +GLP  +
Sbjct: 17  GVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFVGLPRTL 76

Query: 80  NGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            G E         +   + +    R   +P    DERL+TV+A + L +  +S +   + 
Sbjct: 77  KGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSSRNHRKV 136

Query: 136 VDSIAAALILQEVLD 150
           VD +AAA ILQ  +D
Sbjct: 137 VDQVAAAGILQHAID 151


>gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4]
 gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase
 gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 177

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           ++KP+  I ++D G K++G+A+ +     A     L           LL  I    +A  
Sbjct: 23  AIKPHL-ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKV 81

Query: 72  IIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           ++GLPLNM+GS      R H   R   H ++++ + V     DERLT+V+A++I  +   
Sbjct: 82  VVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGW 141

Query: 128 SRKKRIQKVDSIAAALILQ 146
            + +R   +D I+A +++ 
Sbjct: 142 IQNER-DPIDDISACILMS 159


>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
           20162]
 gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
           20162]
          Length = 161

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G  RIG+A+SDP    A P   +   +       +   +T       +IGLP  + 
Sbjct: 14  ALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGLPRTLR 73

Query: 81  GSEGPRVHSTRAF------VHNMIDRKVYVPFV-FWDERLTTVSAQQILIDMNVSRKKRI 133
           G  G        F      V +  D+    P V F DER TTV+AQ+ L D  V  K++ 
Sbjct: 74  GDRGESARMAEGFAARLATVLDATDQPS--PRVCFSDERFTTVTAQRALRDNGVRAKEQR 131

Query: 134 QKVDSIAAALILQEVLD 150
             +D  AA  ILQ  LD
Sbjct: 132 AVIDQAAAVAILQGWLD 148


>gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp.
           SB155-2]
 gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 130

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 8/131 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           IA+ID+G KRIG AI   G+    P+  ++RK   Q A ++ SF+   NI   ++G+P  
Sbjct: 5   IAAIDVGLKRIGTAICLDGK-IVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP-- 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+    +    A   +++D    V FV  DE  T+  A++      V + K+  K+DS
Sbjct: 62  -DGTSKEEMQRRIAHFVSLLDFDGVVEFV--DEGFTSHEAKEAT--KGVIKHKKDGKIDS 116

Query: 139 IAAALILQEVL 149
           IAA  IL+  L
Sbjct: 117 IAAQKILERWL 127


>gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
 gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
          Length = 139

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+A+       A P   L  +      L +   +        ++GLP
Sbjct: 4   QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     R F  N +  +  +     DERL+TV A+  L +    R      V
Sbjct: 64  LNMDGTEQPLTDRARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122

Query: 137 DSIAAALILQEVLD 150
           DS +AA+ILQ+  +
Sbjct: 123 DSQSAAIILQDWFE 136


>gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 143

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 16/150 (10%)

Query: 15  PNQPIASIDLGTKRIGLAISD-----PGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           P   I +ID GTKR GLA++D     PG     P   L+          L  ++  E + 
Sbjct: 2   PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTHQLLNY--------LADYLGREEVE 53

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++G P  M+ +      + +A    +      +   + DER T+V AQQ + +  + +
Sbjct: 54  TIVLGKPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGK 113

Query: 130 KKRIQK---VDSIAAALILQEVLDRISFLE 156
           ++R Q    VD ++A +ILQ  L+ +  L 
Sbjct: 114 QRRRQDKGLVDRVSATIILQSYLESLRMLH 143


>gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus
           flagellatus KT]
 gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase
 gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT]
          Length = 146

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G KRIG+AI +     AHP   +  +   +    +   I        ++GLP  
Sbjct: 12  VLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEMLVVGLPSY 71

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG E       R F   +  R   +P    DERL++  A Q L    +S +K+   +D 
Sbjct: 72  LNGDEHALTQLCRKFARRLEGR-FNLPVQLVDERLSSAEASQTLKQSGISGRKQKSVLDQ 130

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ   D ++
Sbjct: 131 VAAQHILQSYFDGLA 145


>gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
           ATCC 33393]
 gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
           ATCC 33393]
          Length = 139

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG A+       A   P    +        +   I        ++GLPLN
Sbjct: 5   VIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F  N +  +  +P    DERLTT  A+  +      R     KVD 
Sbjct: 65  MDGTEQPLTLRAKKFA-NRLHGRFNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVDG 123

Query: 139 IAAALILQEVLDRIS 153
           I+A LIL+   ++  
Sbjct: 124 ISACLILESWFEQYC 138


>gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER]
 gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64]
 gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER]
 gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64]
          Length = 144

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
           ++DLGTK  G AISD G   A     L  ++    A+  ++  +  T  I   ++G PL 
Sbjct: 5   ALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPLR 64

Query: 79  MNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            N +   R     +F H +     D K+Y      +E  TT++A  IL +  +S KKR  
Sbjct: 65  SNNTSSERTVLFESFAHKLKGIFKDYKIYQV----NEYGTTIAATNILKEAKLSIKKRKA 120

Query: 135 KVDSIAAALILQEVLD 150
             D+++A LILQE L+
Sbjct: 121 HKDTLSAVLILQEFLN 136


>gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 135

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++GLP +++G EGP     R+F   +      VP    DER+TTV+A Q L    V  K
Sbjct: 39  VVVGLPRSLSGREGPAAKKIRSFAQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSK 98

Query: 131 KRIQKVDSIAAALILQEVLD 150
           K    +D  AA +ILQ  L+
Sbjct: 99  KGRSVIDQAAAVVILQNALE 118


>gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 139

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GT+ IG AI                +++T TA  L SF  T+ I  +    
Sbjct: 3   NRTIMAFDFGTRSIGAAIG---------------QEITGTARALTSFKATDGIPNWQQIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      I+GLPLNM+G+E       R F  N +  +  V     DERLTTV A+ 
Sbjct: 48  KLLKEWQPDLVIVGLPLNMDGTEQFVTIQARKFA-NRLHGRFGVQVELQDERLTTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    +     KVD+ +A +IL+   ++
Sbjct: 107 HLFDRGGYKALDKGKVDATSAVIILESWFEQ 137


>gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont]
          Length = 138

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTE-NIAAFII 73
           ++ +   D GTK IG+AI    +     RP    K    T   EL+  +  E      ++
Sbjct: 3   SETLLGFDFGTKSIGVAIGQ--QLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVV 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R  + 
Sbjct: 61  GLPLNMDGSEQPLTARARKFA-NRLHGRFGVRVELQDERLSTVEARADLFERGGYRALQK 119

Query: 134 QKVDSIAAALILQEVLD 150
             +DS +A +ILQ+  +
Sbjct: 120 GHIDSQSAVIILQDWFE 136


>gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri
           JV22]
 gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri
           JV22]
          Length = 126

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 16/134 (11%)

Query: 19  IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +ASID+G KRIG+AI   SD       P+  ++RK   Q A ++ +F+    I   I+G 
Sbjct: 3   LASIDVGLKRIGVAICLTSD----IVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGF 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +    +    H    FV+ +   K+ +P+ F +E ++++ A++ LI   + + KR  +
Sbjct: 59  PTSSEDMQNRIKH----FVNLL---KLQIPYEFCEENMSSIEAEE-LIKGEI-KYKRDGR 109

Query: 136 VDSIAAALILQEVL 149
           VDS+AA +IL+  L
Sbjct: 110 VDSLAAKIILERYL 123


>gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 145

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
           ++DLGTK  G AISD G   A     L  ++    A+  ++  +  T  I   ++G PL 
Sbjct: 6   ALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPLR 65

Query: 79  MNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            N +   R     +F H +     D K+Y      +E  TT++A  IL +  +S KKR  
Sbjct: 66  SNNTSSERTVLFESFAHKLKGIFKDYKIYQV----NEYGTTIAATNILKEAKLSIKKRKA 121

Query: 135 KVDSIAAALILQEVLD 150
             D+++A LILQE L+
Sbjct: 122 HKDTLSAVLILQEFLN 137


>gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
 gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
          Length = 149

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 11/141 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75
           + D G KRIG+AI +   R A  R  +V     R+   +   +LL+    +   A ++GL
Sbjct: 13  AFDYGEKRIGVAIGNALTRSA--RALVVISNLNREHRFKAVGDLLAEWRPD---ALVVGL 67

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P++ +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R + 
Sbjct: 68  PMHPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEM 126

Query: 136 VDSIAAALILQEVLDRISFLE 156
           +D+ AA +ILQ+ LD++S  E
Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147


>gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase
 gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 143

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I + D+G+K IGLA S      +            Q   +L  ++   N +  ++G P
Sbjct: 3   QSIIAFDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVGYP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
            NMN + G R       +   +D  +Y  F     +  DER TT  A+ ILI  N++R+K
Sbjct: 63  KNMNNTIGERAEMVDYVIEMFLD--MYKSFNKDQIIKVDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           + +  DS+AA LIL+  L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139


>gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
 gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
          Length = 152

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
             D GT RIG+A+       A P  P   R  +     + ++ +  E     F++GLPLN
Sbjct: 19  GFDFGTTRIGIAVGQEITATATPINPIKARDGIPN--WDTIAEVVKEWQPDGFVVGLPLN 76

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F  N +  +   P    DERL++  A+  +I    +R  +   VD 
Sbjct: 77  MDGTENEMCQRARKFA-NRLHGRYNKPSYMMDERLSSYEAKGQVIKEGGNRNFKANSVDG 135

Query: 139 IAAALILQ 146
           +AA +IL+
Sbjct: 136 LAAQMILE 143


>gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase
 gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC
           25259]
          Length = 145

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFI 72
           + +  + + DLG KR G+A  +     AHP   +++ + T   +  +  +  E   A F+
Sbjct: 5   QTHGTVLAFDLGLKRTGVASGELAIGIAHPLT-VIQAESTDARMAAIEKLAAEWQPALFV 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP   +GSE       R F   + + +   P    DERLT+ +A+  L    +  KK 
Sbjct: 64  LGLPTRADGSENEMTRVARNFARRL-ESRFERPVFLIDERLTSATAESELHARGIHGKKN 122

Query: 133 IQKVDSIAAALILQEVLD 150
               D++AA LILQ   D
Sbjct: 123 KALTDAVAAQLILQGFFD 140


>gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium
           pseudotuberculosis I19]
          Length = 197

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            ID+GT RIG+A SD   R A P     R   +R +       LL  I    +   ++GL
Sbjct: 20  GIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAVVEVVVGL 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P ++ G+    V   +     +  R    +  +P    DERLTTV A Q L    +S K 
Sbjct: 80  PRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRASGISEKT 139

Query: 132 RIQKVDSIAAALILQEVLD 150
             + +D  AA  ILQ  LD
Sbjct: 140 GRKVIDQAAAVEILQSWLD 158


>gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
 gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
          Length = 142

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID G KR GLA+SD  + FA     +  K +     EL   ++ E I   +IG P 
Sbjct: 3   KILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTLMD---ELKKLVSKEKITEIVIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            ++ S+     + R     +  +KV+  V     DER T+  A  ++    + +K R QK
Sbjct: 60  RLDTSDSHITQNVRLLKEAV--QKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117

Query: 136 --VDSIAAALILQEVL 149
             +D+++A +ILQ+ L
Sbjct: 118 GLIDTVSATIILQDYL 133


>gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164]
 gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164]
          Length = 147

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT+++G+AI     + A+P      K        LL  +       F++GLPLN
Sbjct: 10  IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+ SE       R F    +  +  +  +  DERLTT  A+  L         R    DS
Sbjct: 70  MDESESELSARARKFARR-LRHQTNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128

Query: 139 IAAALILQ 146
           IAAAL+++
Sbjct: 129 IAAALLIE 136


>gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4]
 gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase
 gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4]
 gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 177

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLP 76
           +ID+G+ RIG+A SDP    A P   + R K           +++ ++       I+GLP
Sbjct: 23  AIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAVEVIVGLP 82

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
             + G +G       AF   +      +P    DERLTTV+A + L +  V  + +   +
Sbjct: 83  QTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKARGQRPMI 142

Query: 137 DSIAAALILQEVLDRISFL----ESSK 159
           D  AA  ILQ  LD  S      ESSK
Sbjct: 143 DQAAAVEILQGWLDERSRAVKPGESSK 169


>gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis
           Bu]
          Length = 149

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + D G KRIG+AI +   R A      P L R+   +   +LL+    +   A ++GLP+
Sbjct: 13  AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F  N ++ +  +P  + DER ++V A+  L + +V  + R   +D
Sbjct: 70  HPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAGMLD 128

Query: 138 SIAAALILQEVLDRISFLE 156
           + AA +ILQ+ LD++S  E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147


>gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist]
 gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27]
 gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase
 gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase
 gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist]
          Length = 145

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 9/142 (6%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +VKS+  ++    +D G+ RIG+A  + G   A P   L R     +  E+L +I+  +I
Sbjct: 1   MVKSV-ADRFFLGLDFGSTRIGVA-RNCGS-LAVPVGVLPR----ASCAEILGYISRYSI 53

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              +IGLPL + G E       + F   ++   V V F  +DER TTV A Q    +   
Sbjct: 54  DEVVIGLPLTLAGKEKQSARLAKEFSRFLVSSGVQVRF--FDERFTTVIATQKFYSLGKG 111

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
            K+  + VD+ AA ++LQ  LD
Sbjct: 112 VKQIRKCVDAAAATVMLQLFLD 133


>gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
 gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
 gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 141

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           NQ   + D GTK IG+AI       A P   L  +        L + +        ++GL
Sbjct: 4   NQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R      
Sbjct: 64  PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122

Query: 136 VDSIAAALILQEVLD 150
           VDS++A +IL+   +
Sbjct: 123 VDSLSAVIILESWFE 137


>gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
 gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase
 gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
          Length = 173

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +KP+  I ++D G K++G+A+ +     A     L           LL  I    +A  +
Sbjct: 20  IKPHL-ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVV 78

Query: 73  IGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           +GLPLNM+GS      R H   R   H ++++ + V     DERLT+V+A++I  +    
Sbjct: 79  VGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWI 138

Query: 129 RKKRIQKVDSIAAALILQ 146
           + +R   +D I+A +++ 
Sbjct: 139 KHER-APIDDISACILMS 155


>gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946]
 gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946]
          Length = 140

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           NQ   + D GTK IG+AI       A P   L  +        L + +        ++GL
Sbjct: 3   NQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121

Query: 136 VDSIAAALILQEVLD 150
           VDS++A +IL+   +
Sbjct: 122 VDSLSAVIILESWFE 136


>gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
 gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
          Length = 207

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+GT R+G+AI D     A P   L R     + + L++ +  E      I+G+P  M
Sbjct: 26  GVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIVGMPRTM 85

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY--------VPFVFWDERLTTVSAQQILIDMNVSRKK 131
            G E    H++     +               VP    DERL++VSA + L +  +S + 
Sbjct: 86  KGEE----HASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSSRN 141

Query: 132 RIQKVDSIAAALILQEVLD 150
             + VD +AAA ILQ  +D
Sbjct: 142 HRKVVDQVAAAGILQHAID 160


>gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase
 gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I +ID G KR G+AI+D  +  A     +     ++T++  L  + T E +   +IG P 
Sbjct: 4   ILAIDYGQKRTGIAITDEMQIIASGLTTIA----SETSIAFLRDYFTKEKVEKVLIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MNG           FV    +    +     DER T+  A Q +ID  + +K+R  K  
Sbjct: 60  QMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119

Query: 136 VDSIAAALILQEVLDR 151
           VD I+A ++LQ+ L R
Sbjct: 120 VDEISATIMLQDYLTR 135


>gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis
           M01-240013]
 gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
 gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 151

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP++ +G++    H +  F   +  R   +P V+W DERL++V A+ +L +  V  KKR 
Sbjct: 65  LPVHTDGTKHEMTHLSHKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  IL    +
Sbjct: 123 SVLDQVAAQAILHGFFE 139


>gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45]
 gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45]
          Length = 146

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 21  SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           S DLGTK  G AISD            RF      +V  KV     E++  +   +I AF
Sbjct: 5   SFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVK----EIIK-MYQNSIDAF 59

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G PL  NGS+  R      F   + +    +     DE  +T+ AQ+IL D  +S KK
Sbjct: 60  VLGYPLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKK 119

Query: 132 RIQKVDSIAAALILQEVL 149
              K D+++A +IL + L
Sbjct: 120 TKSKKDTVSAVIILNDFL 137


>gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
 gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
          Length = 143

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+G+ RIG+A+ DP    A P   + R       +E ++ +  E + A  I+GLP  +
Sbjct: 10  GVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAEVIVGLPKTL 69

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               G    + R F   +  R   V   + DERLTTV+A Q +     + K     +D  
Sbjct: 70  RNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAKSSRAVIDQA 129

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 130 AAVAILQGWLD 140


>gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661]
 gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661]
          Length = 140

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P   L  +  T    ++ + +        ++GLPLNM+
Sbjct: 8   AFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPLNMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+TV A+  L +    R      VDS++
Sbjct: 68  GTEQPLTARARKFA-NRIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGSVDSLS 126

Query: 141 AALILQEVLD 150
           A +IL+   +
Sbjct: 127 AVIILESWFE 136


>gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 140

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GTK IG AI                ++VT TA  L SF   E    +    
Sbjct: 3   NRTIIAFDFGTKSIGAAIG---------------QEVTGTARPLASFKANEGSPDWSKIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N I  +  V     DERL+TV A+ 
Sbjct: 48  KMLKEWQPDLVVVGLPLNMDGTEQPVTAQARKFA-NRIHGRFGVQVALHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L      R      VD+ +A +IL+   ++
Sbjct: 107 HLFAGGGYRALDKGSVDAASAVIILESWFEQ 137


>gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202]
 gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
          Length = 140

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GT+ IG AI                +++T +A  L SF   +    +       
Sbjct: 6   ILAFDFGTRSIGCAIG---------------QELTGSARPLQSFKANDGAPDWQQIEKVL 50

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+GSE P     R F  N +  +  V     DERL+TV A+  L 
Sbjct: 51  REWQPDLVVVGLPLNMDGSEQPLTQMARKFA-NRLHGRFGVQIALQDERLSTVEARAHLF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
                R     +VD+ +AALIL+   +  ++
Sbjct: 110 AGGGYRALEKGRVDAASAALILESWFEHQTY 140


>gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae
           UW101]
 gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase
 gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101]
          Length = 138

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I SID G KR G+A++D  +  A     +     T T ++ L  +   E + A +IG P 
Sbjct: 4   ILSIDYGQKRTGIAVTDEMQIIASGLTTIP----THTLIDFLKDYFAKEKVEAVLIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MNG           FV +  +    +  +  DER T+  A Q ++D  +S+K+R  K  
Sbjct: 60  QMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGL 119

Query: 136 VDSIAAALILQEVLDRISF 154
           +D I+A ++LQ+ L    F
Sbjct: 120 IDEISATIMLQDYLSSKRF 138


>gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425]
 gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG KRIG+A  D     A     L R+   +   +L   +    +   ++GLP  M+
Sbjct: 6   GLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    +      I + + +P  + DERLT+  A+ +L        +    +D  A
Sbjct: 66  GSIGFQARRVQRLAQR-IAQALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRKA 124

Query: 141 AALILQEVLDR 151
           AALILQ+ L++
Sbjct: 125 AALILQQWLEQ 135


>gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
 gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase
 gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
          Length = 145

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GT+RIGLA  D     A P P LV     +    LL+      +   ++G PLNM+
Sbjct: 5   GIDYGTRRIGLAYGDE-LGVATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHPLNMD 63

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            + GP+     A    +      V     DERLT+  A+  +        +    +DS A
Sbjct: 64  DTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVIDSRA 123

Query: 141 AALILQEVLDR 151
           A LILQ+ LD+
Sbjct: 124 ATLILQDFLDQ 134


>gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis
           UMN179]
 gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis
           UMN179]
          Length = 139

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N  + + D GT+ IG A+                + +TQTA  L +F   + I  +    
Sbjct: 3   NLTVIAFDFGTQSIGCAVG---------------QSITQTAQALPAFKAQDGIPNWDAIK 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E       R F  N ++ +  V     DERLTT  A+ 
Sbjct: 48  KCLDEWKPDLVVVGLPLNMDGTEQEITQRARKFA-NRLNGRFGVKIALQDERLTTTEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            +      R     K+DSI+A LIL+   +
Sbjct: 107 EIFSRGGYRALNKGKIDSISACLILESWFE 136


>gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
           43183]
 gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
           43183]
          Length = 152

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            ID+G+ RIG+A SDP    A P   + R K     L+ ++ +  E+ A   I+GLP ++
Sbjct: 4   GIDVGSVRIGVARSDPAGILATPLETVRRGK---GDLDRIAELVAEHEAVEVIVGLPTSL 60

Query: 80  NGSEGPRVHSTRAFVHNMIDR-KVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           +G  GP     R F   +  R    +P      +DERLTTV+A+  L    V  K R Q 
Sbjct: 61  SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120

Query: 136 VD 137
           VD
Sbjct: 121 VD 122


>gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC
           BAA-895]
 gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase
 gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895]
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A   P +  +  T     +   +        I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +  V     DERL+T+ A+  L +    R     KVDS +
Sbjct: 67  GTEQPLTARARKFA-NRIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGKVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESYFEQ 136


>gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b]
          Length = 142

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G KRIG+A+       A P   +  K        +   IT  N  A I+GLP  ++
Sbjct: 11  GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVGLPTCID 70

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
             E     + R F   +  ++  +P    DERL+TV A+  L +    R+ +  +VDSIA
Sbjct: 71  DRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 129

Query: 141 AALILQEVLDR 151
           A +IL++ L +
Sbjct: 130 ACVILEQWLQQ 140


>gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
           6725]
 gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase
 gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
           6725]
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G  R+G+AISDP +  A P    +  +      EL       NI   +IG PL+
Sbjct: 3   ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQGYNIEKVVIGYPLS 61

Query: 79  -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
            ++  +          +   I  +  V  V WDER +T + ++++  ++N  RKK+I  +
Sbjct: 62  KLHPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDEELNWKRKKKI--I 119

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 120 DKVAAVYILQGYLD 133


>gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 76

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV +++ ++  +   + DER+TT+ + ++L+DM+V R+ R + +D 
Sbjct: 1   MNNTLGPQAMKVISFV-DLLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59

Query: 139 IAAALILQEVLD 150
           IAA+ ILQ  LD
Sbjct: 60  IAASFILQTYLD 71


>gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase
 gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase
 gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase
 gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
          Length = 135

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K+IG+A+ +   +   P   L  +        + + I        ++GLPLN
Sbjct: 3   VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG++    + +  F  N++  K  +     DERLTTV A+ I+   N  +  + +K+ S
Sbjct: 63  INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121

Query: 139 IAAALILQEVLDR 151
            AA +IL+   ++
Sbjct: 122 CAAVIILESWFNQ 134


>gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
          Length = 136

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR G+A++D  +  A     +  K +      L  +++ E + A +IG P  
Sbjct: 4   IIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTF---LKKYLSEEKVEAMVIGEPKR 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN            F  ++  +   +  +  DER T+  A Q ++D  + +KKR  K  V
Sbjct: 61  MNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNKALV 120

Query: 137 DSIAAALILQEVL 149
           D I+A +ILQ+ L
Sbjct: 121 DQISATIILQDYL 133


>gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 146

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K+IG+A+ +   +   P   L  +        + + I        ++GLPLN
Sbjct: 14  VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG++    + +  F  N++  K  +     DERLTTV A+ I+   N  +  + +K+ S
Sbjct: 74  INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 132

Query: 139 IAAALILQEVLDR 151
            AA +IL+   ++
Sbjct: 133 CAAVIILESWFNQ 145


>gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID GTKR+G+A++DP    A     +   ++      L  ++T  +    +IG PL 
Sbjct: 4   ILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDF---LNEYLTVNDCNRLVIGYPLT 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           +             F+        Y+  + +DER T+  A   ++   + R+KR  K  +
Sbjct: 61  LRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDKAVI 120

Query: 137 DSIAAALILQEVLDRIS 153
           D I+A +ILQ  L+ IS
Sbjct: 121 DRISATIILQNYLESIS 137


>gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis
           158L3-1]
 gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase
 gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis
           158L3-1]
          Length = 147

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTALELLSFITTEN-----IAAFIIG 74
            +DLG K  G AISD  +  A     F   +      +  + +   E+     +   I+G
Sbjct: 5   CLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDEIILG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL M+ SE       + F   ++ + + +P    DER +T +A+ IL     + K++  
Sbjct: 65  LPLRMDLSESKTTKMVKKFA-TVLAKNITLPIRLQDERQSTKNAEAILSQGGYNAKQKKL 123

Query: 135 KVDSIAAALILQEVLDR 151
           K DS+AA LIL++ L+R
Sbjct: 124 KKDSLAAQLILEDYLER 140


>gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila
           str. Paris]
 gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase
 gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris]
          Length = 139

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G KRIG+A+       A P   +  K        +   IT  N  A I+GLP  ++
Sbjct: 8   GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
             E     + R F   +  ++  +P    DERL+TV A+  L +    R+ +  +VDSIA
Sbjct: 68  DRELYTTSAARHFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126

Query: 141 AALILQEVLDR 151
           A +IL++ L +
Sbjct: 127 ACVILEQWLQQ 137


>gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM
           9187]
 gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187]
          Length = 146

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ +   D GTK IG+A        A P   L   +      ++   +        I+GL
Sbjct: 6   NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F   +  R  +    F DERLTT  A+  L +    R     +
Sbjct: 66  PLNMDGTEQEMTQRARKFGQRLHGRFGF-QVEFKDERLTTTDAKARLFEHGGYRALGKSR 124

Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
           VD+++A LIL+      S++ES  G
Sbjct: 125 VDAVSAQLILE------SWMESHYG 143


>gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
          Length = 141

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 4   HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R      
Sbjct: 64  PLNMDGSEQPLTARARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122

Query: 136 VDSIAAALILQEVLD 150
           VDS++A +IL+   +
Sbjct: 123 VDSLSAVIILESWFE 137


>gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829]
 gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
 gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
          Length = 141

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  R+G+A+SD     A P   L  ++V   A      +        + GLP  
Sbjct: 3   VLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLPRT 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G  G +           I R   +   F DERL++  A++IL +   S K+    +D 
Sbjct: 63  LAGDVGAQAQKLMEQAQT-IARACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHIDM 121

Query: 139 IAAALILQEVLD 150
           IAA+L LQ  LD
Sbjct: 122 IAASLFLQAWLD 133


>gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase
 gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D GTK IG+A+       A   P +  K       +L   I      A ++G PLN
Sbjct: 3   IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           ++G++      +  F   +  + ++ +P +  DERL+TV A+ IL +    +  + +++D
Sbjct: 63  IDGTKQKITQCSENFSKKL--KNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERID 120

Query: 138 SIAAALILQ 146
           S++A +IL+
Sbjct: 121 SMSAVIILE 129


>gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
 gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
          Length = 146

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           + D G KRIG+A+ +   R A P   +V+ +  +   E L  +  E    A ++GLP++ 
Sbjct: 13  AFDYGVKRIGVAVGNSLTRRARPL-VVVQNRSKEYRFEALGKLIAEWKPDALVVGLPMHP 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+   R    + F  N ++ +  +P  + DER ++V A+  +   N     R   +D+ 
Sbjct: 72  DGTPHERTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAEIRAGNA----RADMLDAE 126

Query: 140 AAALILQEVLDRIS 153
           AA++ILQ+ LD +S
Sbjct: 127 AASIILQQYLDELS 140


>gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
           2338]
          Length = 124

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G+P  + G  GP   +  ++   + +R   VP V+ DERLTTV+A ++L    V  KK+ 
Sbjct: 37  GMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQR 96

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 97  AVVDQAAAVEILQAWLD 113


>gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383]
 gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase
 gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383]
          Length = 149

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 11/141 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75
           + D G KRIG+A+ +   R A  R  +V     R+   +   +LL+    +   A ++GL
Sbjct: 13  AFDYGEKRIGVAVGNALTRSA--RALVVIQNLNREHRFKAVGDLLAEWRPD---ALVVGL 67

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P++ +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R + 
Sbjct: 68  PMHPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEM 126

Query: 136 VDSIAAALILQEVLDRISFLE 156
           +D+ AA +ILQ+ LD++S  E
Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147


>gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
 gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia
           1]
 gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
          Length = 142

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 5   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  ++  +P    DERL+TV A+  L +    R+ +  
Sbjct: 65  LPTCIDDRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140


>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa]
 gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R G+A+S   + F   RP  V + +  +  L LL     E +  FIIGLP + 
Sbjct: 93  GVDLGLSRSGVALS---KGFTV-RPLTVLELRGQKLELRLLEIAENEEVDEFIIGLPKSW 148

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-----DERLTTVSAQQILIDMNVSRKKRIQ 134
           +G E P+ +  R+         V      W     DE  T+  A   +IDM +++  R +
Sbjct: 149 DGKETPQSNKVRSVAGRFA---VLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQK 205

Query: 135 KVDSIAAALILQ 146
           KVD+ AA ++L+
Sbjct: 206 KVDAYAAVMVLE 217


>gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone HF10-88D1]
          Length = 153

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 8/153 (5%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+GTKRIGLA  DP    ++  P + R +  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
             FI+G+PL+  G    +    + +   ++ R++ +PF + +E  +T  S+ +  I    
Sbjct: 61  TGFIVGIPLDEEGQMTTQAIDCKKY-GQLLSRELMLPFSYVNEHSSTWESSYRFGI---- 115

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +K +   +DS +A +IL++ +     LE   G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIAEGPELEEIAG 147


>gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037]
 gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037]
          Length = 157

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
            ID+G  R+G+A SDP    A P   + RK     ++   A E  +F         ++GL
Sbjct: 11  GIDVGRARVGVARSDPDGVLAVPVETVPRKGEPVRRIVALAAEYEAF-------EVLVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLN+ G +       RAF   +    +  P    DERL+TVSA  +L     S++     
Sbjct: 64  PLNLRGEDTASTADARAFAQELAA-ALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRSI 122

Query: 136 VDSIAAALILQEVLD 150
           VD +AA ++LQ+ LD
Sbjct: 123 VDQVAAVVLLQQALD 137


>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
 gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
          Length = 137

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  RIG+A SD     A P   + R   T     +   +  EN    ++G+P +++
Sbjct: 6   GLDVGDVRIGVAKSDILGILATPLEVINRND-TDPVKRIKELLQQENTNGLVVGIPKSLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVD 137
           G+   +V     F+  +      +  +  DER TTV A+  L   N S+K   +R + VD
Sbjct: 65  GTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYL--RNYSKKNPRERRKVVD 122

Query: 138 SIAAALILQEVLD 150
            +AA++ILQ+ LD
Sbjct: 123 MVAASIILQKFLD 135


>gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
           49989]
 gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
           49989]
          Length = 148

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G   IG+A SD     A     + R+ + +   +++  +  ++ +  +IG+PLN
Sbjct: 3   VLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMPLN 62

Query: 79  MNGSEGPRVHS--TRAFVHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
             G E     S  T  F   + ++        +   F+DER TT  A+ +LI   +  KK
Sbjct: 63  TYG-EAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGKK 121

Query: 132 RIQKVDSIAAALILQEVLDRISF 154
           +   +D  AA ++LQ  LD+ S+
Sbjct: 122 QKDVIDKQAAVILLQSYLDKKSY 144


>gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha
           C91]
 gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase
 gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91]
          Length = 157

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPL 77
           + + D G +RIG+AI +   R AHP    + + +T+   E +   I T      ++GL +
Sbjct: 21  VLAFDFGVRRIGVAIGEYELRLAHPL-MTIDQAMTKPRFEKIAELIETWQPVLLVVGLSV 79

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+E       + F   + + +  +P V  DER TT  A+  L ++ ++ +K+   +D
Sbjct: 80  HADGAEHEITRLCQRFARRL-EGRFGIPVVMEDERYTTAIARLTLEEVGITGRKQRPMLD 138

Query: 138 SIAAALILQEVLD 150
            IAA  ILQ   D
Sbjct: 139 QIAAQHILQTFFD 151


>gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G KRIG+A+       A P   +  K        +   IT  N  A I+GLP  ++
Sbjct: 8   GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
             E     + R F   +  ++  +P    DERL+TV A+  L +    R+ +  +VDSIA
Sbjct: 68  DRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126

Query: 141 AALILQEVLDR 151
           A +IL++ L +
Sbjct: 127 ACVILEQWLQQ 137


>gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           AU 1054]
 gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           HI2424]
 gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           MC0-3]
 gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           J2315]
 gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase
 gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase
 gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase
 gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase
 gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054]
 gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424]
 gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3]
 gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 149

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 11/141 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75
           + D G KRIG+AI +   R A  R  +V     R+   +   +LL+    +   A ++GL
Sbjct: 13  AFDYGEKRIGVAIGNALTRSA--RALVVIQNLNREHRFKAVGDLLAEWRPD---ALVVGL 67

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P++ +G+        + F  N ++ +  +P  + DER ++V A+  L + NV  + R   
Sbjct: 68  PMHPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTDM 126

Query: 136 VDSIAAALILQEVLDRISFLE 156
           +D+ AA +ILQ+ LD++S  E
Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147


>gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
           25986]
 gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
           25986]
          Length = 119

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            + G PL M G  GP+     A    + D ++ +P  F DERL++  A++IL +  ++ K
Sbjct: 32  LVSGRPLTMAGEPGPQAERVAAVAQKIAD-ELDLPLEFEDERLSSQEAKRILREQGLNEK 90

Query: 131 KRIQKVDSIAAALILQEVLDR 151
           +   K+D IAA+L LQ  LDR
Sbjct: 91  QMRGKIDMIAASLFLQTWLDR 111


>gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans
           OS217]
 gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase
 gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217]
          Length = 141

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           NQ +   D GTK IG+A+       A P   L  +       E+   I        ++GL
Sbjct: 4   NQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F  N I  +  V  +  DERLTT  A+  L ++   +     +
Sbjct: 64  PLNMDGTEQDITQRAKKFA-NRISGRFGVKVLTQDERLTTADAKARLFELGGYKALTKGQ 122

Query: 136 VDSIAAALILQEVLD 150
           VD+++A LI++   +
Sbjct: 123 VDAVSAVLIIESYFE 137


>gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
 gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
          Length = 143

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GT+RIG+A+ +   R A     L  +        +   +       F++GLPLN
Sbjct: 7   ILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F   +  R   +P    DER +T  A+ I  D       R   VD 
Sbjct: 67  MDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYRDDGVDG 125

Query: 139 IAAALILQEVL 149
           +AA LIL+  L
Sbjct: 126 LAAVLILEGWL 136


>gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
 gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
          Length = 151

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG+KRIG+A  D     A     + R    +   +L   + T  +   ++GLP +M+
Sbjct: 8   GLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYSMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G +    +     +    + +P  + DERLT+  A+  L     S  +    +D  A
Sbjct: 68  GTLGFQARKVQKLATRLAA-ALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLIDRHA 126

Query: 141 AALILQEVLDR 151
           AA+ILQ+ LDR
Sbjct: 127 AAIILQQWLDR 137


>gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72]
 gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase
 gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72]
          Length = 156

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           + D G  RIG+A+ +   R A+P    V ++       +++ +  E    A ++GLP ++
Sbjct: 20  AFDFGLARIGVAVGELETRHANPL-LTVHEEANAARFAIIARLLDEWKPVALVVGLPGHL 78

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138
           +G E       R F  N +  +  +P    DERL++ +A++ L D  +S  + R   +D+
Sbjct: 79  DGREHELAPRCRRFA-NQLHGRFGIPVHLVDERLSSAAAERQLHDAGLSGWQARKPVLDA 137

Query: 139 IAAALILQEVLD 150
           +AA LILQ  LD
Sbjct: 138 VAAQLILQHFLD 149


>gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
 gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
          Length = 140

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q   S D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 3   SQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGSEQPLTARARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121

Query: 136 VDSIAAALILQEVLD 150
           VDS++A +IL+   +
Sbjct: 122 VDSLSAVIILESWFE 136


>gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
           Pf-5]
 gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase
 gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens
           Pf-5]
          Length = 145

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+GS          F   +  R   VPF   DERLTT  A+ + L         R   VD
Sbjct: 66  MDGSPSDMCVRAEKFARRLNGR-FNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD  + L
Sbjct: 125 AIAAALLLQGWLDENAGL 142


>gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
 gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase
 gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G KRIG+A+       A P   +  K        +   IT  N  A I+GLP  ++
Sbjct: 8   GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
             E     + R F   +  ++  +P    DERL+TV A+  L +    R+ +  +VDSIA
Sbjct: 68  DRELYTTSAARRFAKQL-HKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126

Query: 141 AALILQEVLDR 151
           A +IL++ L +
Sbjct: 127 ACVILEQWLQQ 137


>gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase
 gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ + + D GTK IG+AI                +++T TA  L SF   E I  +    
Sbjct: 3   NRTLLAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L +    +      VD+ +A +IL+   +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136


>gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae
           WPP163]
 gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ + + D GTK IG+AI                +++T TA  L SF   E I  +    
Sbjct: 3   NRTLLAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L +    +      VD+ +A +IL+   +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136


>gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601]
 gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase
 gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. AS9601]
          Length = 153

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 8/153 (5%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+GTKRIGLA  DP    ++  P + R +  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
             FI+G+PL+  G    +    + +   ++  ++ +PF + +E  +T  S+++  I    
Sbjct: 61  TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERFGI---- 115

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +K +   +DS +A +IL++ ++    LE   G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147


>gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri
           RM4018]
 gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction
           resolvase [Arcobacter butzleri RM4018]
          Length = 126

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 16/134 (11%)

Query: 19  IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +ASID+G KRIG+AI   SD       P+  ++RK   Q A ++ +F+    I   I+G 
Sbjct: 3   LASIDVGLKRIGVAICLTSD----IVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGF 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +    +    H    FV N+++  + +P+ F +E ++++ A++ LI   + + KR  +
Sbjct: 59  PTSSEDMQNRIKH----FV-NLLE--LQIPYEFCEENMSSIEAEE-LIKGEI-KYKRDGR 109

Query: 136 VDSIAAALILQEVL 149
           VDS+AA +IL+  L
Sbjct: 110 VDSLAAKIILERYL 123


>gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9215]
 gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase
 gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9215]
          Length = 153

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 8/153 (5%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+G KRIGLA  DP    ++  P + R K  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
             FI+G+PL+  G    +    + +   ++  ++ +PF F +E  +T  S+ +  I    
Sbjct: 61  TGFIVGIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRFGI---- 115

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +K +   +DS +A +IL++ ++    LE   G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147


>gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 139

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG A+       A   P    +        +   I     A  ++GLPLN
Sbjct: 5   VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P     + F   +  R   VP    DERLTT  A+  +            KVD 
Sbjct: 65  MDGTEQPLTLRAKKFAKRLHGR-FNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVDG 123

Query: 139 IAAALILQEVLDRIS 153
           I+A LIL+   +  +
Sbjct: 124 ISACLILESWFENYA 138


>gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 143

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 21/143 (14%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-------- 70
           + + D GTK IG+A+       A P            A+  +  I   +I A        
Sbjct: 9   VLAFDFGTKSIGVAVGQEVTGTASPL----------DAINAVDGIPNWDIVAKVFEQWQP 58

Query: 71  --FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              I+GLPLNM+GS      + + F  N ++ K  VP    DERLTTV A+  L +M   
Sbjct: 59  DLAIVGLPLNMDGSFQQVTFAAKKFA-NRLNAKYRVPIETVDERLTTVDAKARLFEMGGF 117

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
           +K   +K+DS +A LI +  +++
Sbjct: 118 KKLDKRKIDSASACLIFESWVEQ 140


>gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
 gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
          Length = 141

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GT  IG AI                +++T TA  L +F   E   ++    
Sbjct: 3   NRTIIAFDFGTHSIGTAIG---------------QEITGTARALSAFKAKEGSPSWELIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      I+GLPLNM+G+E       R F  N +  +  V     DERLTT+ A+ 
Sbjct: 48  KLLKEWQPDLIIVGLPLNMDGTEQLVTAQARKFA-NRLHGRFGVQVELHDERLTTIEARS 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    +     KVDS++A +IL+   ++
Sbjct: 107 HLFDHGGYKALDKGKVDSVSAVVILESWFEQ 137


>gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 156

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GT R+G+A +DP    + P   L R        EL + +   +    ++GLP ++ 
Sbjct: 4   GVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHLK 63

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G EG      R +   +   KV  P V     DERL++  A Q L    V        +D
Sbjct: 64  GGEGVSAKGARRYARRV---KVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVID 120

Query: 138 SIAAALILQEVLD--RIS 153
            +AA +I++  LD  RIS
Sbjct: 121 QVAAQIIIEHALDTERIS 138


>gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str.
           Tucson]
 gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str.
           Tucson]
          Length = 140

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D G+K IG AI       A        +  +    ++   +        ++GL
Sbjct: 3   NRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGSEQPVTEQARKFA-NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+    R
Sbjct: 122 VDSASAVVILESWFGR 137


>gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans
           2-40]
 gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase
 gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40]
          Length = 142

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTKRIG A+       A+    +  K+       + + +        I+GL
Sbjct: 3   SQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F  N I  +  VP   +DERLTT  A+++  +           
Sbjct: 63  PLNMDGTENELCRRAKKF-GNRIHGRFRVPVEMFDERLTTREAKELAWEEGHKGNYANDP 121

Query: 136 VDSIAAALILQ 146
           VDSIAA LIL+
Sbjct: 122 VDSIAARLILE 132


>gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703]
 gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703]
          Length = 139

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +  T    ++ + +        I+GL
Sbjct: 3   NRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPITARARKFAQRLHGR-FGVAIQLHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+ +A +IL+   ++ S
Sbjct: 122 VDAASAVIILESWFEQQS 139


>gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
 gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
          Length = 151

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL---SFITTENIAAFIIGLP 76
            +D+GT RIG+A  DP    A P     V       A EL      I   +    ++GLP
Sbjct: 12  GLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEYDAVGVVVGLP 71

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            ++ G E       R+F   +      VP    DERLTTV+A   L     + +K+   +
Sbjct: 72  TSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAGRNTRKQRDVI 131

Query: 137 DSIAAALILQEVLD 150
           D  AA ++LQ  +D
Sbjct: 132 DQAAAVVLLQAWID 145


>gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
          Length = 139

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG A+       A   P    +        +   I     A  ++GLPLN
Sbjct: 5   VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       + F  N +  +  +P    DERLTT  A+  +      R     KVD 
Sbjct: 65  MDGTEQELTLRAKKFA-NRLHGRFNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVDG 123

Query: 139 IAAALILQEVLDRIS 153
           I+A LIL+   ++ S
Sbjct: 124 ISACLILESWFEQYS 138


>gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 172

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
            +DLG  + GLAIS  G  +A PRP  V ++     LE +L     +    F++GLP   
Sbjct: 17  GVDLGDAKTGLAISLGG--YA-PRPLTVVRQRGDKLLETILQVGIPQRADEFVVGLPKAW 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFV-FW-----DERLTTVSAQQILIDMNVSRKKRI 133
           +G +  + +  R+F   + +    V +   W     DE  T+  A   +IDM  +R+ R 
Sbjct: 74  DGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSRK 133

Query: 134 QKVDSIAAALIL 145
           +++D+ AA  +L
Sbjct: 134 EQLDAYAATALL 145


>gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
          Length = 141

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 4   HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R      
Sbjct: 64  PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122

Query: 136 VDSIAAALILQEVLD 150
           VDS++A +IL+   +
Sbjct: 123 VDSLSAVIILESWFE 137


>gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
 gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
          Length = 140

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 3   HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F  N +  +  V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121

Query: 136 VDSIAAALILQEVLD 150
           VDS++A +IL+   +
Sbjct: 122 VDSLSAVIILESWFE 136


>gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 156

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +  +D G  ++G+A+ +   + A P              ELL  I +  ++  IIGLP
Sbjct: 12  ETVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLP 71

Query: 77  LNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           LNM+GS     +  + F     H++ +     P +  DERLT+  A+ +  +  + +  +
Sbjct: 72  LNMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSDK 131

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
            + +DSIA+A++L       S+L S +G
Sbjct: 132 -EPIDSIASAIMLG------SWLRSGEG 152


>gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM
           10152]
 gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase
 gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 180

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
            ID+G+ RIG+A SDP    A P   + R K      V+     +   +        I+G
Sbjct: 23  GIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYEAVEVIVG 82

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  + G +G    +  AF   +      V     DERLTTVSA + L D  V  + + Q
Sbjct: 83  LPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGVRARGQRQ 142

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA  ILQ  LD  S +  S G
Sbjct: 143 VIDQAAAVSILQGWLDERSAVMRSVG 168


>gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
 gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
          Length = 146

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   + A P   +  +       E+   I      A ++GLP++ +
Sbjct: 13  AFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVGLPMHPD 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+        R F  N ++ +  +P  + DER ++V A+  L     + K R  ++D+ A
Sbjct: 73  GTPHEMTQLARRF-GNQLNGRFNLPVTWVDERYSSVEAEAGL----RATKGRADRLDAEA 127

Query: 141 AALILQEVLDRIS 153
           A++ILQ+ LD +S
Sbjct: 128 ASIILQQYLDGLS 140


>gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
 gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
          Length = 154

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 10/152 (6%)

Query: 14  KPNQPIASI---DLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTE-N 67
           KP + I  +   D GTKR+G+A+   G+R       +  +  K  +   E L  +  E  
Sbjct: 5   KPTEKIKRVMGFDFGTKRMGVAM---GQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQ 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
              F++GLP NM+GSE         F   +  R   +P    DERLTT  A+ I      
Sbjct: 62  PDGFVVGLPFNMDGSESDMSRRANKFSKRLHGR-YGLPSYTIDERLTTFEAKHIARQQGH 120

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
               +   VD +AA  IL+  L      E S+
Sbjct: 121 KGHYKSDPVDELAAQFILETWLSEFPLSEQSQ 152


>gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
           Pf0-1]
 gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase
 gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens
           Pf0-1]
          Length = 145

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   +  R   +PF   DERLTT  A+ + L+        R   VD
Sbjct: 66  MDGTPSEMCARAEKFARRLNGR-FNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFLESS 158
           +IAAAL+LQ  LD  + L  S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145


>gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase
 gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ I + D GTK IG+AI                +++T TA  L SF   E I  +    
Sbjct: 3   SRTILAFDFGTKSIGVAIG---------------QEITGTARPLTSFKAQEGIPDWQKVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIALHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L +    +      VD+ +A +IL+   +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136


>gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
 gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
          Length = 161

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G KR+G+AI +     AHP   +  +   +  + +   I T     F++G+PL+
Sbjct: 23  ILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGMPLH 82

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G        ++ F   +  R   +P V  DER T+  A  IL +  V  +++   +D 
Sbjct: 83  SDGIVHELTQLSQRFARRLAGR-FNIPVVMQDERYTSQIASTILREAGVVGREQKSVLDQ 141

Query: 139 IAAALILQEVLD 150
           IAA  ILQ   D
Sbjct: 142 IAAQQILQSFFD 153


>gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A]
 gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A]
          Length = 136

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     + R+  T    +L   I T      ++GLP+ M+
Sbjct: 2   GLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILMD 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
           GS G +    + F  N I   + +P  + DER T++ A   + ++   RK    +   VD
Sbjct: 62  GSLGSQAKQIQKF-GNRISTILNLPIEYIDERFTSLEA---VSELKAQRKYSSYEKGLVD 117

Query: 138 SIAAALILQEVLDR 151
             AA +ILQ  LD+
Sbjct: 118 CYAAKIILQRWLDQ 131


>gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
 gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
          Length = 141

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D G K+ G A  D   +   P   +      +    L+  I  +NI   + GLPL+
Sbjct: 2   VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-- 136
             G E       R F   ++ + V V  VF DE  T+  A  IL      RKK ++K   
Sbjct: 62  DEGKESEWCSEIRRFSDFLL-KSVKVNVVFVDEYGTSKEADYIL----RGRKKNVKKKAN 116

Query: 137 DSIAAALILQEVLD 150
           D IAAALIL+  L+
Sbjct: 117 DLIAAALILENYLN 130


>gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase
 gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 138

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 19/141 (13%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI--TTEN--IAAFIIG 74
           I +ID G KR G AISDP +        +V   VT  + + + ++   TEN  I  F++G
Sbjct: 4   IVAIDYGEKRTGFAISDPLK-------MIVSSFVTVLSRKAVMYLKNCTENYDIELFVLG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKK 131
            P  M+ +    +     F  N+  R+V +P +     DER T+V A +I+I+  V + K
Sbjct: 57  EPRQMDYTPSENMPRVEKFKRNL--RRV-IPSIDVQMVDERFTSVLAHRIMIEGGVKKIK 113

Query: 132 RIQK--VDSIAAALILQEVLD 150
           R  K  VD ++AA++LQ  L+
Sbjct: 114 RQDKGLVDRLSAAILLQTYLE 134


>gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 134

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I ++D GTKR G+A++D  +  A           T    ELL F+      EN+   ++G
Sbjct: 4   ILALDFGTKRTGIAVTDELQLIASGL-------TTVNTKELLDFLKKYFAEENVELILLG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P  MN +E   V +        +++   +P    DER T+  A Q ++D  + +K+R  
Sbjct: 57  EPKRMN-NEASHVEAEILKFRESLEKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKN 115

Query: 135 K--VDSIAAALILQEVL 149
           K  +D I+A +ILQ  L
Sbjct: 116 KALLDEISATIILQTYL 132


>gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
 gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
          Length = 157

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D+G KRIGLA  DP      P P + R +  Q    L +  TT  + A ++GLPL+
Sbjct: 9   VLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVVGLPLD 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G    +      +   +  + + +P  + +E  ++ +A +   +++  R  R+   DS
Sbjct: 69  DKGQRTAQAEHCERYGRRLA-QTLALPLAWVNEHSSSWAAGESR-NLHGDRSGRL---DS 123

Query: 139 IAAALILQEVL 149
            AAAL+L++ L
Sbjct: 124 EAAALLLEQWL 134


>gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN]
 gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae
           Br4923]
 gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase
 gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase
 gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 184

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 8   DLVKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           DL K+L P +     ID+G+ RIG+A SDP    A P   + R +  +    L   +   
Sbjct: 16  DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            +   ++GLP  +    G            +  R   VP    DERLTTVSAQ++L    
Sbjct: 76  QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRI 152
           V  K +   +D  AA +ILQ  LD+ 
Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQC 161


>gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2]
          Length = 144

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+A+       A P   L  +        +            ++GL
Sbjct: 6   SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           PLNM+G+E       + F + +  R KV V     DERLTT  A+ +L ++   +K   +
Sbjct: 66  PLNMDGTEQEVTQRAKKFANRLHGRFKVAVDLC--DERLTTTDAKSMLFELGGYKKLTKE 123

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
           K+DS++A +I        S++E+  G
Sbjct: 124 KIDSVSACVIF------TSWVENQYG 143


>gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
 gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
          Length = 139

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ +   D GTK IG+AI                ++VT TA  L SF   + I  +    
Sbjct: 3   NRTVMGFDFGTKSIGVAIG---------------QEVTGTARPLASFKAKDGIPDWSQIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E       + F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KIIKEWQPDLVVVGLPLNMDGTEQLVTTQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L +    R      VD+ +A +IL+   +R
Sbjct: 107 HLFEQGGYRSLDKGSVDATSAVIILESWFER 137


>gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
           14884]
          Length = 141

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA  D   RFA  R +L R  +      + +F   E     ++GLPL 
Sbjct: 3   VVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +GS   +       V  +  R+  +     DER TT  AQ  +  +   +++   ++D 
Sbjct: 63  TDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRLDE 120

Query: 139 IAAALILQEVL 149
            AA  IL+  L
Sbjct: 121 AAAVAILETYL 131


>gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein)
           [Campylobacter lari RM2100]
 gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase
 gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein)
           [Campylobacter lari RM2100]
          Length = 128

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    +  A P   ++RK   Q A E+  +I   ++   ++G+PL   
Sbjct: 5   ALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPLG-G 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE         F+  +  D++V+    F DE  ++ +AQ++ +   V+ KK+  K+DS+
Sbjct: 63  SSEDEMRKRVEHFISLLDFDKEVF----FVDESFSSKNAQELGM---VNLKKKDGKLDSL 115

Query: 140 AAALILQE 147
           AA L L++
Sbjct: 116 AAYLFLKD 123


>gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 138

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G  R+G+AISDP +  A P    +  +      EL S     +I   +IG PL+
Sbjct: 3   ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDSIFQRFSIEKVVIGYPLS 61

Query: 79  -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKV 136
            ++  +          +   I  +  V  V WDER +T + ++++  ++N  RKK++  +
Sbjct: 62  KLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVERVMNEELNWKRKKKV--I 119

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 120 DKVAAVYILQGYLD 133


>gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
 gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
          Length = 143

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 31/148 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           + + D GTK IG+A+                ++VT TA  L +    + I  +       
Sbjct: 9   VLAFDFGTKSIGVAVG---------------QEVTGTASPLDAIKAVDGIPNWDVVAKVF 53

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+G+      + + F  N +  K  VP    DERLTTV A+  L 
Sbjct: 54  EQWQPDLALVGLPLNMDGTFQQVTFAAKKF-GNRLSAKYRVPVETVDERLTTVDAKARLF 112

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDR 151
           +M   +K   QK+DS +A LI +  +++
Sbjct: 113 EMGGFKKLDKQKIDSASACLIFESWVEQ 140


>gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
           NATL2A]
 gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase
 gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
           NATL2A]
          Length = 144

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + S+D+G KRIG+A  DP G    H  P + R    +   E         +   I G PL
Sbjct: 9   VLSLDIGDKRIGIAGCDPLGISITH-LPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG E  +    + +   +  + + +P  F +E  +TV A++     N     +  ++D
Sbjct: 68  DMNGMETKQSIRCKKYGIKLA-KCLKLPLAFINEHCSTVEAKEKFSLKN----DKTGRID 122

Query: 138 SIAAALILQEVL 149
           S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134


>gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
 gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
          Length = 142

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+    + D G +RIG+A+ +     AHP   +  +   Q    +   I     A  ++G
Sbjct: 2   PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E      +R F  N +  +  +P    DER T++ A+ +L +  V  +K+  
Sbjct: 62  LPVHADGTEHDLTRLSRRFA-NRLKGRFGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA  ILQ   ++
Sbjct: 121 ALDQVAAQAILQTWFEQ 137


>gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
           9941]
 gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase
 gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
           9941]
          Length = 139

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   +A++DLG    G+A+SDP R  A P   L   + ++    L   +  E +   ++G
Sbjct: 4   PEGRVAALDLGEVWTGVAVSDPTRTLARP---LEVVRTSELPGVLRRLVREEGVGEVLVG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  + G  G +       + ++      V FV WDERLTT      L +     ++  +
Sbjct: 61  LPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR--E 118

Query: 135 KVDSIAAALILQEVLD 150
           +VD +AAA +LQE L+
Sbjct: 119 RVDHLAAARMLQEYLE 134


>gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
           ATCC BAA-894]
 gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase
 gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894]
          Length = 138

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ----TALE-LLSFITTENIAAFIIGL 75
           + D GTK IG+AI    R  A  RP    K        T +E LL     +++   I+GL
Sbjct: 7   AFDFGTKSIGVAIGQ--RVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDV---IVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N +  +  +     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARTFA-NRLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
 gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
          Length = 152

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 12/137 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT-TENIAAF--IIGLPL 77
           ++D+G  RIG+A SDP    A P      + V +   +L   +T   ++ AF  ++GLP 
Sbjct: 8   ALDIGDARIGVASSDPHGILATPV-----ETVRRGPGDLDRIVTLVADLEAFEIVVGLPR 62

Query: 78  NMNGSEGP---RVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           ++NG EGP   ++ +T   V  ++  R+V       DER TTV+A+++L +      KR 
Sbjct: 63  SLNGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRERGKKGSKRR 122

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA +ILQ  LD
Sbjct: 123 AVVDQAAAVVILQHALD 139


>gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638]
 gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase
 gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638]
          Length = 138

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+AI       A P   +  +  T     +   +      A I+GLPLNM+
Sbjct: 7   AFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGLPLNMD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E P     R F  N I  +        DERL+TV A+  L +    R      VDS +
Sbjct: 67  GTEQPLTARARKFA-NKIHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGSVDSAS 125

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 126 AVIILESFFEQ 136


>gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
           3043]
 gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase
 gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
           3043]
          Length = 148

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GT+RIG+A+ +     A     L  +       ++ + +        ++GLPLN
Sbjct: 9   VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F  N +  +   P   +DER +T +A++I  D       R   VD 
Sbjct: 69  MDGTESDMSRRARKF-GNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127

Query: 139 IAAALILQEVLDRISFLE 156
           IAA LIL+      +FL+
Sbjct: 128 IAAQLILESFFADDTFLQ 145


>gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7]
 gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7]
          Length = 137

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  + + D GTK+IG+AI +   R A P   L      Q    +   +        ++G
Sbjct: 5   PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL  +GSE       R F  N +  +  V  V  DER +++ AQQ+L +          
Sbjct: 65  LPLATDGSEQYASLRCRRFA-NQLHGRFGVETVLVDERGSSMEAQQMLGNNTDD------ 117

Query: 135 KVDSIAAALILQEVLDRIS 153
             D++AAA+ILQ  LD ++
Sbjct: 118 --DAVAAAIILQRYLDGLA 134


>gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1]
 gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase
 gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1]
          Length = 147

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q I + D GT+++G+AI       + P      K       +LL  +       F++GL
Sbjct: 7   HQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGL 66

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +     ++  DERLTT  A+  L       + +   
Sbjct: 67  PLNMDDSESELSARARKFARRLRHQTNITTWMV-DERLTTREARDELESYQEQGRAKKIA 125

Query: 136 VDSIAAALILQ 146
            DSIAA+L++Q
Sbjct: 126 ADSIAASLLIQ 136


>gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ I + D GTK IG+AI                +++T TA  L SF   E I  +    
Sbjct: 3   SRTILAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L +    +      VD+ +A +IL+   +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136


>gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
 gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
          Length = 151

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D      HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP + +G+E      +R F   +  R   +P V+W DER++++ A+ +L +  V  +K+ 
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  ILQ   +
Sbjct: 123 SVLDQVAAQAILQGFFE 139


>gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301]
 gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase
 gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301]
          Length = 153

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 8/153 (5%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+G+KRIGLA  DP    ++  P + R +  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
             FI+G+PL+  G    +    + +   ++  ++ +PF + +E  +T  S+++  I    
Sbjct: 61  TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERFGI---- 115

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +K +   +DS +A +IL++ ++    LE   G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147


>gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
           SRS30216]
 gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase
 gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
           SRS30216]
          Length = 188

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
           ++D+G+ R+GLA  DP    A P   LVR       +  ++       A  I+ GLPL++
Sbjct: 8   AVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEIVLGLPLSL 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GSEGP       +   ++     VP    DERL+TV A + L    +  K+    VD  
Sbjct: 68  DGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQFRAVVDQA 127

Query: 140 AAALILQEVLD 150
           AA ++LQ  LD
Sbjct: 128 AAVVLLQATLD 138


>gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1]
 gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GL 75
           Q +   D GTK IG+A+       A P    ++ +      +++  +  E    F++ GL
Sbjct: 4   QTLLGFDFGTKSIGVAVGQELTGSARPLT-AIKAQDGIPDWQVIEKLLKEWQPDFVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N +  +  +     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTDRARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VDS +AA+ILQ+  +
Sbjct: 122 VDSQSAAIILQDWFE 136


>gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum]
          Length = 168

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFI----TTENIAA 70
           +  ID G +R+G+A+SDP R  A P   LVR        Q   +LL+ +    T  ++  
Sbjct: 11  LMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDVTG 70

Query: 71  FIIGLP-LNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            + G+P  +++G   P  H+     V   + R + +P    DE  ++ +A++I    +  
Sbjct: 71  LVFGIPYYHLSGD--PNPHAPLFLRVARDLSRDLALPLFLHDEGQSSEAAREIR-KGHPG 127

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R+   Q +D +AAA +LQ  LD
Sbjct: 128 RRNSAQSLDHVAAATLLQGFLD 149


>gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENIAAFIIGL 75
           + D GTK IG+A+    R     RP    K    T        LL     +++   I+GL
Sbjct: 7   AFDFGTKSIGVAVGQ--RITGTARPLTALKANDGTPDWNLIERLLKEWQPDDV---IVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARKFA-NKIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENIAAFIIGL 75
           + D GTK IG+A+    R     RP    K    T        LL     +++   I+GL
Sbjct: 7   AFDFGTKSIGVAVGQ--RITGTARPLTALKANDGTPDWNLIERLLKEWQPDDV---IVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARKFA-NKIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1]
 gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
 gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
          Length = 178

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIA-AFIIGLP 76
            ID+G+ RIG+A SDP    A P   + R K        +  ++ I  E  A   I+GLP
Sbjct: 23  GIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAVEVIVGLP 82

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
             + G  G        F   +  +   +P    DERLTTV+A + L +  VS + +   +
Sbjct: 83  QTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSARGQRPVI 142

Query: 137 DSIAAALILQEVLDRIS 153
           D  AA  ILQ  LD  S
Sbjct: 143 DQAAAVAILQGWLDERS 159


>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4]
 gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
 gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
          Length = 178

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIA-AFIIGLP 76
            ID+G+ RIG+A SDP    A P   + R K        +  ++ I  E  A   I+GLP
Sbjct: 23  GIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAVEVIVGLP 82

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
             + G  G        F   +  +   +P    DERLTTV+A + L +  VS + +   +
Sbjct: 83  QTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSARGQRPVI 142

Query: 137 DSIAAALILQEVLDRIS 153
           D  AA  ILQ  LD  S
Sbjct: 143 DQAAAVAILQGWLDERS 159


>gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
           NRL30031/H210]
 gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
           NRL30031/H210]
          Length = 151

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D      HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP + +G+E      +R F   +  R   +P V+W DER++++ A+ +L +  V  +K+ 
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  ILQ   +
Sbjct: 123 SVLDQVAAQAILQGFFE 139


>gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus]
          Length = 258

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TAL---ELLSFITTENIA 69
             P+  +D+     G+A+SD  +  A P   + R++ T+    AL   +L   +   +  
Sbjct: 97  GSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLDPALVIGKLREIVEDCSAC 156

Query: 70  AFIIGLPLNMNG-SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             ++G PL+ +G +EG  +   +      +  KV +P   +DER+T+V A+ IL D  + 
Sbjct: 157 GLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLG 216

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           RK   ++ D  AA +ILQ  LD
Sbjct: 217 RKI-AEREDETAAMVILQGFLD 237


>gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium
           genitalium ATCC 33030]
 gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium
           genitalium ATCC 33030]
          Length = 167

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            ID+GT RIG+A SD     A P     R    + +       LL  I+  +    ++GL
Sbjct: 20  GIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDAVEVVVGL 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P ++ G+    V   +     +  R   VP  F DERLTTV A   L    V+ +     
Sbjct: 80  PRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVNARDGRAV 139

Query: 136 VDSIAAALILQEVLD 150
           +D  AA  ILQ  LD
Sbjct: 140 IDQAAAVAILQSWLD 154


>gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320]
 gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase
 gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320]
          Length = 139

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ +   D GTK IG AI                ++VT TA  L SF   + I  +    
Sbjct: 3   NRTVMGFDFGTKSIGAAIG---------------QEVTGTARPLASFKAKDGIPDWSQIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E       + F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KIIKEWQPDLVVVGLPLNMDGTEQLVTTQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L +    R      VD+ +A +IL+   +R
Sbjct: 107 HLFEQGGYRSLDKGSVDATSAVIILESWFER 137


>gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237]
 gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R G+A++D  +  A     +  K++      L +++ TE +   ++G P  
Sbjct: 4   IVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDF---LKNYVATEKVELLVVGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVF---WDERLTTVSAQQILIDMNVSRKKRIQ 134
           MN     +V  + A +   I++ K   P +     DER T+  A Q +ID  + +K+R  
Sbjct: 61  MNN----QVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRD 116

Query: 135 K--VDSIAAALILQEVLDRI 152
           K  VD I+A +ILQ  L+RI
Sbjct: 117 KALVDEISATIILQAYLNRI 136


>gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
           20595]
          Length = 153

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+GLP NM+GSEG    + R +   +  R   V     DERLTTVSA Q+L +      
Sbjct: 56  VIVGLPRNMDGSEGKSAKNARRWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEI 115

Query: 131 KRIQKVDSIAAALILQEVL 149
                VD +AA +IL+  L
Sbjct: 116 NHRSVVDQVAAVIILESAL 134


>gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
 gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
          Length = 146

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           + D G KRIG+A+ +   R A P   +V+ +  +   E L  +  E    A ++GLP++ 
Sbjct: 13  AFDYGEKRIGVAVGNSLTRRARPL-VVVQNRSKEYRFEALGKLIAEWKPDALVVGLPMHP 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+   R    + F  N ++ +  +P  + DER ++V A+  +   N     R   +D+ 
Sbjct: 72  DGTPHERTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAEIRAGNA----RADMLDAE 126

Query: 140 AAALILQEVLDRIS 153
           AA++ILQ+ LD ++
Sbjct: 127 AASIILQQYLDGLT 140


>gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Rv]
 gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis CDC1551]
 gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis
           AF2122/97]
 gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis F11]
 gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis 02_1987]
 gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis T92]
 gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis EAS054]
 gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis GM 1503]
 gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis T17]
 gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis T46]
 gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis K85]
 gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis K85]
 gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
 gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis 210]
 gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis KZN R506]
 gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
           SUMu001]
 gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
           SUMu003]
 gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
           SUMu005]
 gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis KZN V2475]
 gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase
 gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase
 gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase
 gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase
 gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase
 gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
 gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
           SUMu001]
 gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
           SUMu003]
 gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
           SUMu005]
 gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
           SUMu012]
 gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148]
 gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 170

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 54/130 (41%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID+G  RIG+A SDP    A P   + R +  +    L +          I+GLP  + 
Sbjct: 26  GIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLA 85

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
              G            +  R    P    DERLTTVSAQ+ L    V   ++   +D  A
Sbjct: 86  DRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAA 145

Query: 141 AALILQEVLD 150
           A  ILQ  LD
Sbjct: 146 AVAILQSWLD 155


>gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii
           ATCC 12478]
          Length = 141

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%)

Query: 28  RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
           RIG+A SDP    A P   + R +  +    L++          ++GLP  +    GP  
Sbjct: 2   RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61

Query: 88  HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
                    +  R    P    DERLTTVSAQ+ L    +  K++   +D  AA  ILQ 
Sbjct: 62  QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121

Query: 148 VLDR 151
            LD+
Sbjct: 122 WLDQ 125


>gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 164

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 17/149 (11%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA----------LELLSFITTENIAA 70
            +D+GT RIG+A+SD   R A P   + R  VT             +EL+ F     +  
Sbjct: 20  GLDVGTVRIGVAVSDRDARLAMPVETVDR--VTNFGDDDGADVDRLVELIGFYGAVEV-- 75

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++GLP ++ G+    V         +  R   VP    DERLTTV+A   L    VS K
Sbjct: 76  -VVGLPRDLKGNGSKSVKHAEDIAARLRAR-CGVPVRMGDERLTTVAATHALRASGVSAK 133

Query: 131 KRIQKVDSIAAALILQEVLD-RISFLESS 158
              + +D  AA  ILQ  LD R++ L+ +
Sbjct: 134 AGRKVIDQAAAVEILQSWLDGRLTTLKET 162


>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 138

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  +D+G  R+G+AISDP +  A P    +  +      EL       +I   +IG PL+
Sbjct: 3   ILCLDMGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQRYSIEKVVIGYPLS 61

Query: 79  -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
            ++  +          +   I  +  V  V WDER +T + ++++  ++N  RKK++  +
Sbjct: 62  KLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVEKVINGELNWKRKKKV--I 119

Query: 137 DSIAAALILQEVLD 150
           D +AA  ILQ  LD
Sbjct: 120 DKVAAVYILQGYLD 133


>gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_27]
 gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_27]
          Length = 138

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
           ++D+G  RIG+A SD     A P   + RKKV   +++ ++ I  EN    I+ G+P ++
Sbjct: 6   ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
           +G E  +    R ++  +      +  +  DER +TV A  IL ++N +    K+++  V
Sbjct: 64  DGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRKV--V 121

Query: 137 DSIAAALILQEVLD 150
           D +AA++ILQ  LD
Sbjct: 122 DKVAASIILQTYLD 135


>gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
 gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
          Length = 132

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIGLP 76
           ++D G KR G+A++D  +  A P   L  K       EL +F  T    E ++  +IGLP
Sbjct: 2   ALDFGEKRTGIAVTDELQIIATPVDTLETK-------ELFNFFETYFAKEKVSELVIGLP 54

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
           +  +G   P  +  + F+         +P    +E  T+  A Q  I   + +K R  K 
Sbjct: 55  MKFSGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKG 114

Query: 136 -VDSIAAALILQEVLDR 151
            +D I+A +ILQ  L +
Sbjct: 115 SLDKISATIILQSFLSK 131


>gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 140

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF---ITTENIAAFIIGLPLN 78
           +D G  R GLA+SDP  R A P   +  +  T   L L +    I      A ++GLPL 
Sbjct: 1   MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLT 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G E       R  V   + R++ +PF +  E L++  A   L +  +  +KR   +D 
Sbjct: 61  QDGKESLTTRQVRN-VTQRLKRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQ 119

Query: 139 IAAALILQEVL 149
            AA  IL   L
Sbjct: 120 QAAVRILSSFL 130


>gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
           SBW25]
 gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
 gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase
 gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens
           SBW25]
 gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
          Length = 145

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
           M+G+          F   +  R   +PF   DERLTT  A+    D    +   R   VD
Sbjct: 66  MDGTPSDMCLRAEKFARRLNGR-YNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFLESS 158
           +IAAAL+LQ  LD  + L  S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145


>gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma
           australiense]
 gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma
           australiense]
          Length = 140

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG K +G+A+S+ G      +  F    +  Q    L   I    I   I+G P +M
Sbjct: 2   GLDLGEKTLGIALSETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPKHM 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           N   G +   +  F   +      V  + WDERL+TV + +IL   N  +KK     D I
Sbjct: 62  NNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKDVI 121

Query: 140 AAALILQEVLD 150
           AA +ILQ  LD
Sbjct: 122 AATIILQNYLD 132


>gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
 gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
          Length = 142

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G +R+G+A  D     A     +VR        +L   +        ++GLP  MN
Sbjct: 8   GLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCMN 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G +    + +    I + + +P  + DERLT+  A++ L        +    +D  A
Sbjct: 68  GDIGSQARQVQNYATR-IGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQA 126

Query: 141 AALILQEVLD 150
           AA+ILQ+ LD
Sbjct: 127 AAIILQQWLD 136


>gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
           K411]
 gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase
 gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
           K411]
          Length = 155

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
            +D+GT RIG+AISDP    A P    ++       ++ +  I  +N +   ++GLP+ +
Sbjct: 19  GLDVGTVRIGVAISDPDCILATPVE-TIQATADDADVQRVVEICRDNFVVEIVVGLPVAL 77

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G+      +   F   + +    +P    DER++T++A        V+ KK  +K+D  
Sbjct: 78  RGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGRKKIDQA 137

Query: 140 AAALILQEVLD 150
           AA  ILQ  LD
Sbjct: 138 AAVHILQGWLD 148


>gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
 gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
          Length = 148

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTKRIG+A+ +     A P   +  +K       +   +     AA ++GLP N +
Sbjct: 12  AFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPAALVVGLPCNDD 71

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+       +R F  N +  +  +P +  DER T+ +A   L    +  +K+   +D  A
Sbjct: 72  GTPHEMTALSRRFA-NRLKGRFNLPTLLIDERYTSAAASSALDKEGIHGRKQKNLIDQYA 130

Query: 141 AALILQEVLDRIS 153
           A  ILQ   D  S
Sbjct: 131 AQQILQAYFDEPS 143


>gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
 gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
          Length = 145

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
           P   +DLG K +G++IS+ G    + +            L+ L   I  +NI   I+GLP
Sbjct: 6   PYLGLDLGEKTLGISISEAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGLP 65

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            +MN   G +   +  F   + D  K+ V  + WDERL+T  +   L + N ++KK  Q 
Sbjct: 66  KHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQL 125

Query: 136 VDSIAAALILQEVLDRIS 153
            D +AA  ILQ  LD  S
Sbjct: 126 KDEVAAMFILQNFLDYQS 143


>gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae
           T3T1]
          Length = 139

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 31/148 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG A+                + +T TA  L +F   + I  +         
Sbjct: 7   AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIEKCLKD 51

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLPLNM+G+E       + F  N ++ +  +     DERLTTVSA+  +   
Sbjct: 52  WKPDVIVVGLPLNMDGTEQDLTLRAKKFA-NRLNGRFGIKVELQDERLTTVSARDEIFQR 110

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
              R     KVD I+A LIL+   +  S
Sbjct: 111 GGYRALNKGKVDGISACLILESWFENYS 138


>gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
 gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
          Length = 164

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G +RIGLAI+DP    A P   L R  +      +  FI    +   ++G PL+
Sbjct: 7   ILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVVVGNPLH 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-------- 130
            +GS  P+     AF   + +    +     DERLTT+ A  +L     S +        
Sbjct: 67  ADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTAGRSHGK 126

Query: 131 --KRIQKVDSIAAALILQEVLDRISFLESSK 159
              R   +D +AA L+L+      SFL   K
Sbjct: 127 TIDRKDLIDQVAATLLLE------SFLSGDK 151


>gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 140

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GTK IG A+     R A   P    +        +   +        ++GLPLN
Sbjct: 5   VLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPLN 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F  N ++ +  V     DERLTT  A+  + +    +     KVD 
Sbjct: 65  MDGTEQELTTRARKFA-NRLNGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVDG 123

Query: 139 IAAALILQEVLDR 151
           I+A LIL+   ++
Sbjct: 124 ISACLILESWFEK 136


>gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase
 gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 140

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 31/148 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG A+                + +T TA  L +F     I  +         
Sbjct: 9   AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQNGIPNWDSIEKCLKE 53

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLPLNM+G+E       R F  N +  +  V     DERLTT  A+  +   
Sbjct: 54  WKPDILVVGLPLNMDGTEQEFTSRARKFA-NRLHGRFGVKVELQDERLTTTEARTEIFQR 112

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
              +     KVD I+AALIL+   +R S
Sbjct: 113 GGYKALNKSKVDGISAALILESWFERHS 140


>gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis
           z3032]
 gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032]
          Length = 138

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ----TALE-LLSFITTENIAAFIIGL 75
           + D GTK IG+AI    R  A  RP    K        T +E LL     +++   I+GL
Sbjct: 7   AFDFGTKSIGVAIGQ--RVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDV---IVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N +  +  +     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTSRARTFA-NRLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 140

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78
            ID G  RIG+A+SD     A     +    ++ T+    +        +AA +IGLP  
Sbjct: 6   GIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVIGLPRR 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G  G      R    +++     +  ++ DER TTV A ++L +  V ++++   VD 
Sbjct: 66  TDGKIGVSEEKARQL-GDLLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKRSVVDQ 124

Query: 139 IAAALILQEVLD 150
           +AA +ILQ+ L+
Sbjct: 125 VAAEIILQDFLE 136


>gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
           266]
 gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
           266]
          Length = 142

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAA 70
            L   + I +ID GTKRIGLA +DP + FA       R     T   LL  +   N I  
Sbjct: 2   GLTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFER----TTLFALLEKMAANNEIEK 57

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G PL+ + S          F+  +      +P    DE  ++  A QILI     +K
Sbjct: 58  ILVGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKK 117

Query: 131 KRIQK--VDSIAAALILQEVLD 150
            R +K  +DS AA +IL++ L+
Sbjct: 118 ARKEKGRIDSAAACVILRDYLE 139


>gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 139

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ I + D GTK IG+AI                +++T TA  L SF   E I  +    
Sbjct: 3   SRTILAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E P     R F  N +  +  +     DERL+TV A+ 
Sbjct: 48  KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGIAIELHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L +    +      VD+ +A +IL+   +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136


>gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis
           OL]
 gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis
           OL]
          Length = 138

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
           I  +D+G  R+G+AISDP +  A P    +  K      EL       +I   +IG PL 
Sbjct: 3   ILCLDIGNSRVGVAISDPLKITAQP-VMTIELKNKDLFDELDKIFQRYSIEKVVIGYPLS 61

Query: 78  ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKR 132
               ++   +  ++      +   I  +  V  V WDER +T + ++++  ++N  RKK+
Sbjct: 62  KLHPDLKDEKLKKIDE----ISEKIGSRYNVEIVKWDERFSTKAVERVMNEELNWKRKKK 117

Query: 133 IQKVDSIAAALILQEVLD 150
           +  +D +AA  ILQ  LD
Sbjct: 118 V--IDKVAAVYILQGYLD 133


>gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515]
 gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase
 gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. MIT 9515]
          Length = 151

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 10  VKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP ++ I S+D+GTKRIGLA  D      +  P L R+K       + S I   N+
Sbjct: 1   MKYSKPKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+GLPL+  G    +    + +   + + ++ +PF F +E  +T  ++         
Sbjct: 61  TGFIVGLPLDDKGRMTSQAFDCKTYGEYLFN-ELKLPFSFVNEHSSTWESENRF----GV 115

Query: 129 RKKRIQKVDSIAAALILQE 147
           +K +   +DS++A +IL++
Sbjct: 116 KKDKSGLIDSLSAKVILEQ 134


>gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
 gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
          Length = 143

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +       ++   +     A  I+GL
Sbjct: 3   NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARKFSQRLQGR-FGVTVELHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
 gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
          Length = 137

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 11/139 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G KR G+A++DP +  A     +   ++T     L  +  +E + AF++G+P  ++
Sbjct: 6   AIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDF---LKKYTLSEQVEAFVVGMPKKLD 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
            ++        AFV ++      +     DER T+  A Q +I     +  R  K  +D 
Sbjct: 63  NTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGNIDK 122

Query: 139 IAAALILQEVLDRISFLES 157
           ++A +ILQ      SF+ES
Sbjct: 123 VSATIILQ------SFMES 135


>gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis
           HAW-EB3]
 gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3]
          Length = 139

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+AI       A+P   +          E+   I        ++GLPLN
Sbjct: 6   VLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSE       + F  N I+ +  V     DERLTT  A+  L +M   +     +VD+
Sbjct: 66  MDGSEQEMTQRAKKFA-NRINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVDA 124

Query: 139 IAAALILQEVLDRI 152
           ++A LI++   + +
Sbjct: 125 MSAVLIIESYFENL 138


>gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina
           NCIMB 400]
 gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB
           400]
          Length = 139

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 31/149 (20%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF----- 71
           Q +   D GTK IG+AI                + +T +A  LLS    + I  +     
Sbjct: 4   QTVLGFDYGTKSIGVAIG---------------QAITASATPLLSIKAVDGIPNWDDIDK 48

Query: 72  ----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                     ++GLPLNM+G+E       R F  N I+ +  V     DERLTT  A+  
Sbjct: 49  LLKEWQPDLVVVGLPLNMDGTEQEMTQRARKFA-NRINGRFGVKIATQDERLTTADAKAR 107

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           L ++   +     +VD+++A LI++   +
Sbjct: 108 LFELGGFKALTKGQVDAVSAVLIIESYFE 136


>gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 139

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 31/148 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG A+                + +T TA  L +F   + I  +         
Sbjct: 7   AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIEKCLKD 51

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLPLNM+G+E       + F  N ++ +  +     DERLTTVSA+  +   
Sbjct: 52  WKPDVIVVGLPLNMDGTEQDLTLRAKKFA-NRLNGRFGIKVELQDERLTTVSARDEIFQR 110

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
              R     KVD I+A LIL+   +  S
Sbjct: 111 GGYRALNKGKVDGISACLILESWFESYS 138


>gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424]
 gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase
 gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424]
          Length = 151

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KR+G+A  D     A     + R        +    +   +I   ++GLP +MN
Sbjct: 9   GLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSMN 68

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+ G +    + +   +  + + +P  + DERLT+  A++ L             VD  A
Sbjct: 69  GTLGSQAKQVQNYATRLA-KALQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQA 127

Query: 141 AALILQEVLDR 151
           AA+ILQ+ LD+
Sbjct: 128 AAIILQQWLDQ 138


>gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12]
 gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12]
          Length = 138

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+      D G KRIG+A+       A P   +  +        +   +      A I+G
Sbjct: 2   PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P  ++G E     + R F   +  ++  +P    DERLTTV A+  L      RK +  
Sbjct: 62  IPTCIDGREQYTTSAARRFAKEL-RKRFTLPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120

Query: 135 KVDSIAAALILQEVL 149
           +VDSIAA +IL++ L
Sbjct: 121 EVDSIAACVILEQWL 135


>gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens
           BL2]
          Length = 150

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
            +D+G+ RIG+A SDP    A P   +VR+     AL+ L  I  E      +IG P ++
Sbjct: 2   GLDIGSVRIGVAASDPDGILATPL-TVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS      +   F    I      P    DER TTV A   L     + ++R + VD+ 
Sbjct: 61  DGSARAAAATALEFAKR-ISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119

Query: 140 AAALILQEVLD 150
           AA +ILQ  L+
Sbjct: 120 AAVIILQNALE 130


>gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937]
 gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937]
          Length = 143

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +       ++   +     A  I+GL
Sbjct: 3   NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARKFSQRLHGR-FGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC
           51908]
 gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908]
          Length = 139

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q +   D GTK IG+AI       A+P   +          E+   I        ++GL
Sbjct: 3   SQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE       + F  N I  +  V     DERLTT  A+  L +M   +     +
Sbjct: 63  PLNMDGSEQEMTQRAKKFA-NRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQ 121

Query: 136 VDSIAAALILQEVLDRI 152
           VD+++A LI++   + +
Sbjct: 122 VDAMSAVLIVESYFESL 138


>gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
 gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
          Length = 146

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A P   +  +       E+   I      A ++GLP++ +
Sbjct: 13  AFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVGLPMHPD 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+        + F  N ++ +  +P  + DER ++V A+        + K R   +D+ A
Sbjct: 73  GTPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAT----TRANKGRADMLDAEA 127

Query: 141 AALILQEVLDRIS 153
           A++ILQ+ LD +S
Sbjct: 128 ASIILQQYLDGLS 140


>gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group
           II '5-way CG']
          Length = 171

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTE-NIA 69
           P+  ID G  RIGLAISD   RF+ P         F+   ++   + + L  I TE  I 
Sbjct: 17  PLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKKIR 76

Query: 70  AFIIGLPL-NMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTT--VSAQQILID 124
             I G+P  +++G   P+   +  FV    +I      P   WDE LT+  + +++I   
Sbjct: 77  GIIFGVPWYHLSGDPNPK---SEIFVEYARLIRSLTGCPVFLWDEGLTSDVLKSERISGK 133

Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
              SR  K+    +D  +A LILQ  LD  
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163


>gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase
 gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium
           glutamicum ATCC 13032]
          Length = 182

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 18/150 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---------LLSFITTENIAAF 71
            +D+GT RIG+A SD   + A P   + R    +T  +         L++ +   N    
Sbjct: 20  GLDVGTVRIGVAASDRDAKLAMPVETVPR----ETGFKGPDLADIDRLVAIVEEYNAVEV 75

Query: 72  IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I+GLP ++ G+    V   +         + +    +P    DERLTTV A Q L    V
Sbjct: 76  IVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGV 135

Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLE 156
           S K   + +D  AA  ILQ  LD R   LE
Sbjct: 136 SEKAGRKVIDQAAAVEILQTWLDARTRALE 165


>gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium
           glutamicum R]
 gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 182

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 18/150 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---------LLSFITTENIAAF 71
            +D+GT RIG+A SD   + A P   + R    +T  +         L++ +   N    
Sbjct: 20  GLDVGTVRIGVAASDRDAKLAMPVETVPR----ETGFKGPDLADIDRLVAIVEEYNAVEV 75

Query: 72  IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I+GLP ++ G+    V   +         + +    +P    DERLTTV A Q L    V
Sbjct: 76  IVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGV 135

Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLE 156
           S K   + +D  AA  ILQ  LD R   LE
Sbjct: 136 SEKAGRKVIDQAAAVEILQTWLDARTRALE 165


>gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K]
 gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase
 gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K]
          Length = 144

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLPLNM 79
           IDLG  R G AISD   + + P    ++K        LE+   +    I   +IGLP+ +
Sbjct: 6   IDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIGLPIKI 65

Query: 80  NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           N     +  ST  FV N    +++++ +P  F +E  ++V A   + +M   ++K I  V
Sbjct: 66  NNE---KTKST-IFVENFKKHLEKEINLPIFFVNEYNSSVLANLSINEMKSKKRKTI--V 119

Query: 137 DSIAAALILQEVLDR 151
           D I+A +IL + L+ 
Sbjct: 120 DKISAQIILNDFLNN 134


>gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis
           JLW8]
 gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8]
          Length = 156

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           + + D G +RIG+A+ +     A   P + +  +  +   ++++ + +E      ++GLP
Sbjct: 20  VLAFDFGERRIGIAVGE--HLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVGLP 77

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+++GSE       + F   +  R   +P    DER ++  A Q+L +  +  + + + +
Sbjct: 78  LSLDGSEHGVTQLCKKFARRLNGR-FNLPVALIDERYSSAEASQLLNEAGIRGRAQKEML 136

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA  ILQ   D+ S
Sbjct: 137 DQVAAQTILQSYFDQAS 153


>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
          Length = 170

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 5   LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61
           L +DL+K+    +  +  +D+G K +G+A+SD   + A P   L+RKK  +   A +  S
Sbjct: 9   LFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAADFQS 68

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID-RKVY-VPFVFWDERLTTVSAQ 119
            I+  ++  FI+G P +      P     + F+ ++   RK+  + + +WDE  T+ + +
Sbjct: 69  LISELSLVGFIVGYPFDRQKGT-PDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSKNVE 127

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            +L  +N+   +    +D  AA  ILQ  LD ++
Sbjct: 128 LLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVN 161


>gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 162

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GT R+G++  DP      P   L+R   +     L   +   +    I+GLP ++ 
Sbjct: 10  GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEVIVGLPRHLR 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G EG      R +   +   K  +P V     DERL++  A   L    V   +    +D
Sbjct: 70  GGEGVSAKGARKYARRL---KTLIPSVRVALVDERLSSNQAHARLRASGVPEHEHRSVID 126

Query: 138 SIAAALILQEVLD 150
            +AA +IL++ L+
Sbjct: 127 QVAAQIILEQALE 139


>gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
 gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
            +D+G+ RIG+A SDP    A P   + R +     L+ ++ I  E+ A   ++GLP ++
Sbjct: 8   GVDVGSVRIGVARSDPSGVLAVPVETVRRGR---DDLDRIAEIAAEHEAIEVVVGLPTSL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G E     + R +   +  R   +P    DERLTTV+AQ+ L    +  +++   +D  
Sbjct: 65  SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124

Query: 140 AAALILQEVLD 150
           AA  +LQ  LD
Sbjct: 125 AAVELLQAALD 135


>gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
 gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
          Length = 186

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENIAAFII 73
           ++D+G+ R+GLA SDP    A P   L R       ++V      ++        A   +
Sbjct: 13  AVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGAAVVYV 72

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +++G+EG    + RA+   +      VP    DER++TV+A Q L     S ++  
Sbjct: 73  GLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRSGRRHR 132

Query: 134 QKVDSIAAALILQEVLD 150
           Q VD  AA +ILQ  LD
Sbjct: 133 QVVDQAAAVVILQYALD 149


>gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase
 gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens]
 gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 145

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLNM+
Sbjct: 8   GFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLNMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDSI 139
           G+          F   +  R   +PF   DERLTT  A+ + L+        R   VD+I
Sbjct: 68  GTPSDMCLRAEKFARRLNGR-YNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVDAI 126

Query: 140 AAALILQEVLD 150
           AAAL+LQ  LD
Sbjct: 127 AAALLLQGWLD 137


>gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591]
 gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591]
          Length = 143

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +       ++   +     A  I+GL
Sbjct: 3   NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARKFSQRLHGR-FGVNVELHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           HTCC5015]
 gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           HTCC5015]
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID G KRIG+A        A P   L           L   +      A ++GLPLN +
Sbjct: 6   GIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGLPLNKD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQKV 136
           GS+       R F  + + +    P  + DER ++  A+Q L     S    RK + + +
Sbjct: 66  GSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKVKKEDI 124

Query: 137 DSIAAALILQEVLDR 151
           D +AAALILQ  L++
Sbjct: 125 DQLAAALILQRWLNK 139


>gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++D+GT RIG+A+S+     A P     R    + +       +L  I + +    ++GL
Sbjct: 21  ALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDAVEVVVGL 80

Query: 76  PLNMNGSEGPRVHSTR--AF-VHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNV 127
           P ++ G+    V   +  AF +   ++R     KV  P    DERLTTV+A   L    V
Sbjct: 81  PRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATTALRASGV 140

Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
           S KK  + +D  AA  ILQ  LD R S L S
Sbjct: 141 SEKKGRKVIDQAAAVEILQTWLDGRASALRS 171


>gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
 gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
          Length = 142

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            ID G  R GLA+SDP  R A P        +  RK        L + IT E   A ++G
Sbjct: 2   GIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAA---LAARITAEEAEAVVMG 58

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL  +G++       R  V   + R+V +P  +  E L++  A   L D  ++ +KR  
Sbjct: 59  LPLLDDGTDSLTTRQVRN-VTERLKRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKA 117

Query: 135 KVDSIAAALILQEVL 149
            +D  AA  IL   L
Sbjct: 118 VLDQQAAVRILASFL 132


>gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102]
 gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102]
          Length = 151

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  +     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP + +G+E      +R F   +  R   +P V+W DER++++ A+ +L +  V  +K+ 
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  ILQ   +
Sbjct: 123 SVLDQVAAQAILQGFFE 139


>gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
 gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
          Length = 155

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D     +HP   +      +    +   I        ++G
Sbjct: 5   PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   D
Sbjct: 124 VLDQVAAQAILQGFFD 139


>gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC
           19977]
 gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase
 gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus]
          Length = 166

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
            +D+GT RIG++ SDP    A P   + R     +    ++ +  E     ++ GLP N+
Sbjct: 24  GVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVVVGLPRNL 83

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
               G        F   + +R   VP    DER TT +AQ+ L +  V  +++   +D  
Sbjct: 84  REGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQRGIIDQA 143

Query: 140 AAALILQEVLD 150
           AA  ILQ+ L+
Sbjct: 144 AAVAILQDWLE 154


>gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++D+GT RIG+A+S+     A P     R    + +       +L  I + +    ++GL
Sbjct: 21  ALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDAVEVVVGL 80

Query: 76  PLNMNGSEGPRVHSTR--AF-VHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNV 127
           P ++ G+    V   +  AF +   ++R     KV  P    DERLTTV+A   L    V
Sbjct: 81  PRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATTALRASGV 140

Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
           S KK  + +D  AA  ILQ  LD R S L S
Sbjct: 141 SEKKGRKVIDQAAAVEILQTWLDGRASALRS 171


>gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168]
 gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168]
          Length = 122

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           I+GLPLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R  
Sbjct: 42  IVGLPLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRAL 100

Query: 132 RIQKVDSIAAALILQEVLDR 151
              K+DS +A +IL+   ++
Sbjct: 101 NKGKIDSASAVIILESYFEQ 120


>gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
           ATCC 33394]
 gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
           ATCC 33394]
          Length = 159

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 15  PNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           P Q    + D G  RIG+A  +     AHP   +      +   ++   I        ++
Sbjct: 5   PKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPEYLVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132
           GLP +++G+E       R F   +  R  +   V+W DERL++V A+++L +  V  KK+
Sbjct: 65  GLPTHIDGTEHEMTRLARQFGRRLHGR--FGKPVYWVDERLSSVYAEELLREAAVFGKKQ 122

Query: 133 IQKVDSIAAALILQEVLD 150
              +D +AA  IL    D
Sbjct: 123 KPVLDQVAAQAILHYFFD 140


>gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
           18603]
 gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
           18603]
          Length = 151

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 19  IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           I + D GTKRIG+A++DP      G    HP+  +           L  +     +  FI
Sbjct: 17  IMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEY---------LKKYFVLNPVERFI 67

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P  M+ +        + FV  +      +P    DER T+  A  ++    + +  R
Sbjct: 68  VGEPKQMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDR 127

Query: 133 IQK--VDSIAAALILQEVLDRIS 153
             K  VD+I+A +ILQ  ++R +
Sbjct: 128 QNKALVDTISATIILQSWMERFN 150


>gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 149

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 19/157 (12%)

Query: 11  KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           KSLKP   + +   D GTK IG+AI   G+        L   K  Q  +     I  + +
Sbjct: 4   KSLKPQGERTVMGFDFGTKSIGIAI---GQELTGSASSLKAVKA-QDGIPNWDHIAVQ-V 58

Query: 69  AAF-----IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
           A +     ++GLPLNM+G+        + F  N +     +P    DERLTT  A+  L 
Sbjct: 59  AEWQPDLMVVGLPLNMDGTSQEVTFKAKKFA-NRLHNHYGIPVQTQDERLTTADAKARLF 117

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +    +      VD+++A +IL+      SF ESS G
Sbjct: 118 ESGGYKNLGKGNVDNMSAVIILE------SFFESSYG 148


>gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 296

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +P++    +D GT+R+GLAI       A P    V   + + A ++L     E I   ++
Sbjct: 75  RPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRDIVV 133

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           GLPL  NG+E       R F   + D     +       WDER ++  A  +L       
Sbjct: 134 GLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGM 193

Query: 130 KKRIQKVDSIAAALILQEVLD 150
             +++ +DS+AA+LIL+   +
Sbjct: 194 SSKVE-IDSLAASLILKHFFE 213


>gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A]
 gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase
 gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. NATL1A]
          Length = 144

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + S+D+G KRIG+A  DP G    H  P + R    +   E         +   I G PL
Sbjct: 9   VLSLDIGDKRIGIAGCDPLGISITH-LPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG E  +    + +   +  + + +P  F +E  +T+ A++     N     +  ++D
Sbjct: 68  DMNGMETKQSIRCKKYGIKLA-KCLKLPLAFINEHCSTLEAKEKFSLKN----DKTGRLD 122

Query: 138 SIAAALILQEVL 149
           S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134


>gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
 gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
          Length = 140

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GT+RIG+A+         P   +  +  T    +L   +        ++GLPLN
Sbjct: 9   VMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGLPLN 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+ SE       R F   +  R  V V  V  DERLT+  A+  ++    SR  R   +D
Sbjct: 69  MDDSENEMCVRARKFGKRLHGRFHVTVEMV--DERLTSYQAKGEVMAAGGSRNYRRDGID 126

Query: 138 SIAAALILQ 146
             AA LIL+
Sbjct: 127 DRAAVLILE 135


>gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase
          Length = 181

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+GT RIG+A SD   R A P   + R+   +         L+  IT  +    ++GL
Sbjct: 20  GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P ++ G+    V   R     +  R       +P    DERLTTV A Q L    ++ + 
Sbjct: 80  PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 139

Query: 132 RIQKVDSIAAALILQEVLD 150
             + +D  AA  ILQ  LD
Sbjct: 140 GRKVIDQAAAVEILQTWLD 158


>gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
 gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
          Length = 146

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  +       EL   I      A ++GLP++ +
Sbjct: 13  AFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVGLPMHPD 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+        + F  N ++ +  +P  + DER ++V A+  L     + K R   +D+ A
Sbjct: 73  GTPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEATL----RANKGRADMLDAEA 127

Query: 141 AALILQEVLDRIS 153
           A++ILQ+ LD +S
Sbjct: 128 ASVILQQYLDGLS 140


>gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
           NK-01]
 gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
           NK-01]
          Length = 144

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP + +   D GTK+IG+A+       A     L  +        + + I      A ++
Sbjct: 4   KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63

Query: 74  GLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           GLPLNM+G+  P   S RA  F   +  R   +P    DERLTT  A+   +    S   
Sbjct: 64  GLPLNMDGT--PSEMSARAEKFARRLNGR-FNLPAYTHDERLTTFEAKGQRLREGQSGGY 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           R + VD+IAAAL+LQ  L+
Sbjct: 121 RERPVDAIAAALLLQGWLE 139


>gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
 gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
          Length = 186

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
            ID G +R G+A++  G     PRP  V K K      +LLS    E    FI+GLP + 
Sbjct: 28  GIDYGLERTGIAVTFCG---LAPRPLSVSKLKGDNLIKKLLSVAKKEKADEFIVGLPRSW 84

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +  E  + + TR F   +        V     DE +T+  A + +I    ++K R  +VD
Sbjct: 85  DAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDALEFMIYRGSTKKSRRLEVD 144

Query: 138 SIAAALI------LQEVL 149
           + AA L+      LQE L
Sbjct: 145 AYAAVLMVPKRGELQETL 162


>gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM
           1131]
 gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM
           1131]
          Length = 139

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P   L          ++   +        I+GLPLNM+
Sbjct: 8   AFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGLPLNMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E       R F  N I  +  V     DERL+TV A+  L +    R     KVDS +
Sbjct: 68  GTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKGKVDSAS 126

Query: 141 AALILQEVLDR 151
           A +IL+   ++
Sbjct: 127 AVVILESWFEQ 137


>gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis
           SB2B]
 gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B]
          Length = 139

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 7/142 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+A+       A+P   +          ++   I        +IGLPLN
Sbjct: 4   VMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F  N ++ +  V     DERLTT  A+  L ++   +     +VD+
Sbjct: 64  MDGTEQEMTQRARKFA-NRLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQVDA 122

Query: 139 IAAALILQEVLDRISFLESSKG 160
           ++A LI++      S+ E+  G
Sbjct: 123 VSAVLIVE------SYFENQYG 138


>gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
 gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
          Length = 188

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+GT RIG+A SD   R A P   + R+   +         L+  IT  +    ++GL
Sbjct: 27  GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 86

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P ++ G+    V   R     +  R       +P    DERLTTV A Q L    ++ + 
Sbjct: 87  PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 146

Query: 132 RIQKVDSIAAALILQEVLD 150
             + +D  AA  ILQ  LD
Sbjct: 147 GRKVIDQAAAVEILQTWLD 165


>gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens
           YS-314]
 gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 204

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
            +D+GT RIG+A SD   R A P   + R+   +         L+  IT  +    ++GL
Sbjct: 43  GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 102

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P ++ G+    V   R     +  R       +P    DERLTTV A Q L    ++ + 
Sbjct: 103 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 162

Query: 132 RIQKVDSIAAALILQEVLD 150
             + +D  AA  ILQ  LD
Sbjct: 163 GRKVIDQAAAVEILQTWLD 181


>gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase
 gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 170

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G +RIG+A SD     A     + R+ +++   ++  +I        ++G+PL  +
Sbjct: 18  GLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLAD 77

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + FV   +   V +P V  +E L+T  A+  L +  +  K +   +D  +
Sbjct: 78  GSVGSQARKVQRFVR-ALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQS 136

Query: 141 AALILQEVLD 150
           AA+ILQ  LD
Sbjct: 137 AAVILQTWLD 146


>gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL082PA2]
 gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL060PA1]
 gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL050PA2]
 gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL103PA1]
          Length = 160

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +ID G  RIG+A SD     A P    +   + V + A  +  +   E     I+GLP+ 
Sbjct: 17  AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D 
Sbjct: 73  LNGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132

Query: 139 IAAALILQEVLD--RISFLESSKG 160
            AA  IL+ VL+  R+  LE++ G
Sbjct: 133 AAAVAILEHVLEQVRLGQLETATG 156


>gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA3]
 gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA4]
          Length = 160

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +ID G  RIG+A SD     A P    +   + V + A  +  +   E     I+GLP+ 
Sbjct: 17  AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D 
Sbjct: 73  LNGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132

Query: 139 IAAALILQEVLD--RISFLESSKG 160
            AA  IL+ VL+  R+  LE++ G
Sbjct: 133 AAAVAILEHVLEQVRLGQLETATG 156


>gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium accolens ATCC 49725]
 gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium accolens ATCC 49725]
          Length = 173

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
           ++D+GT RIG+A S+     A P   + RK     +  +    +L  I        I+GL
Sbjct: 11  ALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTAVEVIVGL 70

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQILIDMNV 127
           P +++G+    V   +     +  R        KV  P    DERLTTV+A   L    V
Sbjct: 71  PRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATTALRASGV 130

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           S KK  + +D  AA  ILQ  LD
Sbjct: 131 SEKKGRKIIDQAAAVEILQSWLD 153


>gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 146

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       AH    L  +       ++ + I      A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           G+  P   S RA  F   +  R     +   DERLTT  A+ + +         R   VD
Sbjct: 69  GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDR 151
           +IAAAL+LQ  LD 
Sbjct: 126 AIAAALLLQGWLDE 139


>gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801]
 gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802]
 gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase
 gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801]
 gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A  D     A     + R        +L  ++        ++GLP +M+
Sbjct: 8   GLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVVGLPYSMD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS G +    + F    I   + +P  + DERLT+V A+  L             +D  A
Sbjct: 68  GSLGFQAKQVQKFTRR-ISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDKGAIDRQA 126

Query: 141 AALILQEVLD 150
           A +ILQ+ LD
Sbjct: 127 ATIILQQWLD 136


>gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
 gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
          Length = 152

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 15  PNQP-IA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           P++P IA   D G + IG+A+       A+P   L   +      ++   I   N    I
Sbjct: 10  PSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKK 131
           +GLPLNM+ SE     + R F   +  R  Y   + W DERL+TV A++ L ++  S   
Sbjct: 70  VGLPLNMDQSEQFLTKAARRFGRRLHGR--YGLTIEWIDERLSTVEARERL-NIKSSASG 126

Query: 132 RIQKVDSIAAALILQEVL 149
           R Q +D +AA  ILQ  L
Sbjct: 127 RRQGIDQMAAQCILQTWL 144


>gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
           15894]
          Length = 184

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTA-LELLSFITTENIAAFI-IGL 75
            +D+G  RIGLA SDP    A P   + R      T +A +  ++    E  AA + +GL
Sbjct: 33  GVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAAVVYVGL 92

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +++G EG      RAF   +      VP    DER++TV+A   L       K     
Sbjct: 93  PRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKSKSHRPV 152

Query: 136 VDSIAAALILQEVLD 150
           +D  AA +ILQ  LD
Sbjct: 153 IDQAAAVIILQSALD 167


>gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139]
 gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139]
          Length = 147

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +ID G  RIG+A SD     A P    +   + V + A  +  +   E     I+GLP+ 
Sbjct: 4   AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D 
Sbjct: 60  LNGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 119

Query: 139 IAAALILQEVLD--RISFLESSKG 160
            AA  IL+ VL+  R+  LE++ G
Sbjct: 120 AAAVAILEHVLEQVRLGQLETATG 143


>gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium accolens ATCC 49726]
 gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium accolens ATCC 49726]
          Length = 183

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
           ++D+GT RIG+A S+     A P   + RK     +  +    +L  I   +    I+GL
Sbjct: 21  ALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSAVEVIVGL 80

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQILIDMNV 127
           P +++G+    V   +     +  R        KV  P    DERLTTV+A   L    V
Sbjct: 81  PRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATTALRASGV 140

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           S KK  + +D  AA  ILQ  LD
Sbjct: 141 SEKKGRKIIDQAAAVEILQSWLD 163


>gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
 gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
          Length = 158

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D     +HP   +      +    +   I        ++G
Sbjct: 5   PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   D
Sbjct: 124 VLDQVAAQAILQGFFD 139


>gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans
           568]
 gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase
 gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568]
          Length = 140

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG AI       A        +  +    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N +  +  V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQLVTEQARKFA-NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   +R
Sbjct: 122 VDSASAVVILESWFER 137


>gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis
           HLHK9]
 gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis
           HLHK9]
          Length = 155

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G  RIG+A+ D     AHP   L           + + I    I+  ++GLP + +
Sbjct: 9   GFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLPTHAD 68

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+        R F   +  R   +P V  DER +++ A+ +L +     +K+   +D +A
Sbjct: 69  GTPHEMTRLARRFAQRLHGR-FGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVLDQVA 127

Query: 141 AALILQEVLDR 151
           A +ILQ   D+
Sbjct: 128 AQVILQSFFDQ 138


>gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 138

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLGTKRIG+A+++     A P   +  +   +  L  L      ++      LP+ ++
Sbjct: 11  GVDLGTKRIGVAVAEG--SLALPLEVIDARGPWRARLAELVASVGASVVVVG--LPIGLD 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GSEG      R +   + +  + VP VF DERL++ +A++ L    V  + R   VD+ A
Sbjct: 67  GSEGRAAARVRQWSEGLAE-HLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGAVDAFA 125

Query: 141 AALILQEVL 149
           A  IL+  L
Sbjct: 126 ATEILERWL 134


>gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL037PA2]
 gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL044PA1]
 gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL037PA3]
          Length = 160

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTE-NIAAFIIGLP 76
           +ID G  RIG+A SD     A P       +  QTA   ++ L+ I  E      I+GLP
Sbjct: 17  AIDWGKARIGVAASDRDAILAFP------VETVQTANRPMQRLAEIVAEYEPVEVIMGLP 70

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           + +NG+E       R     + +    +P  + DER+TT +A + L D   + +++   +
Sbjct: 71  VALNGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVI 130

Query: 137 DSIAAALILQEVLDRI 152
           D  AA  IL++VL+++
Sbjct: 131 DQAAAVAILEDVLEQV 146


>gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
           6940]
 gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
           6940]
          Length = 180

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75
           ++D+GT RIG+A+SD     A P   + R    K   +  ++ +L  I   ++   ++GL
Sbjct: 20  ALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHVVEVVVGL 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNM-----IDRKVYVPFV-FWDERLTTVSAQQILIDMNVSR 129
           P ++ G+    V   +     +      D  +  P V   DERLTTV+A   L    VS 
Sbjct: 80  PRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTALRASGVSE 139

Query: 130 KKRIQKVDSIAAALILQEVLD-RISFLES 157
           KK  + +D  AA  ILQ  LD R + L+S
Sbjct: 140 KKGRKVIDQAAAVEILQSWLDARHNALQS 168


>gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
 gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ +   D GTK IG+AI                +++T TA  L SF   + I  +    
Sbjct: 3   NKTVMGFDFGTKSIGVAIG---------------QEITGTARPLASFKAKDGIPDWAQIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E       + F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KIIKEWQPDLVVVGLPLNMDGTEQLVTAQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L +    R      VD+ +A +IL+   ++
Sbjct: 107 HLFERGGYRSLDKGSVDAASAVIILESWFEQ 137


>gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 151

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+   D      HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
           LP + +G+E      +R F   +  R   +P V+W DER++++ A+ +L +  V  +K+ 
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122

Query: 134 QKVDSIAAALILQEVLD 150
             +D +AA  ILQ   +
Sbjct: 123 SVLDQVAAQAILQGFFE 139


>gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae]
 gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae]
          Length = 146

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 21  SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           + DLGTK  G AISD             F+      V  KV +   +        +I AF
Sbjct: 5   AFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQY-----QNSIDAF 59

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G PL  NG++  R      F   +      +     DE  +T+ AQ+IL D+  S KK
Sbjct: 60  VLGYPLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKK 119

Query: 132 RIQKVDSIAAALILQEVL 149
              K D+++A +IL + L
Sbjct: 120 TKSKKDTLSAVIILNDFL 137


>gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
 gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
          Length = 140

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   L          E+   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G++       R F  N +  +   P  F DERLTT  A+  L +    R      
Sbjct: 63  PLNMDGTDQEITVRARKF-GNRLHGRFGKPVEFKDERLTTTDARARLFERGGYRALEKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD ++A LI++  ++
Sbjct: 122 VDGVSAQLIVEAWME 136


>gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 153

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
           P     + D G  RIG+A  D     +HP    V     +   E ++ +  E     F++
Sbjct: 5   PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLT-TVTGGSNEVKFEAVAKLVDEWQPVQFVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132
           GLP++ +G+E      +R F   +  R   +P V+W DER++++ A+ +L +  V  +K+
Sbjct: 64  GLPVHADGTEHELTRLSRKFGRRLQGR-FKLP-VYWVDERMSSLYAESLLAEAQVFGRKQ 121

Query: 133 IQKVDSIAAALILQ 146
              +D +AA  ILQ
Sbjct: 122 KAVLDQVAAQAILQ 135


>gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa
           NIES-843]
 gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase
 gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa
           NIES-843]
          Length = 145

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KR+G+A  D     A     ++R        +  + +   NI   + GLP  M 
Sbjct: 8   GLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTMA 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G +    + +   +    + +P  + DER T++ A++ L             +D  A
Sbjct: 68  GELGFQAQQVQKYAQKLAI-ALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDREA 126

Query: 141 AALILQEVLDR 151
           AA+ILQ+ LDR
Sbjct: 127 AAIILQQWLDR 137


>gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 162

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KR+G+A  D     A     ++R        +  + +   NI   + GLP  M 
Sbjct: 8   GLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTMA 67

Query: 81  GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G  G +    + +   +   +D    +P  + DER T++ A++ L             +D
Sbjct: 68  GELGFQAKQVQKYAQKLAITLD----LPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAID 123

Query: 138 SIAAALILQEVLDR 151
             AAA+ILQ+ LDR
Sbjct: 124 REAAAIILQQWLDR 137


>gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis
           ATCC 700755]
 gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis
           ATCC 700755]
          Length = 137

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 9/138 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D G KR G+AISD  +  A     +  + + Q   EL   I  E++   ++G P +
Sbjct: 5   VIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQPKH 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTVSAQQILIDMNVSRKKRIQK- 135
           ++G       +   F+ ++  + ++   V    DER T+  A Q +ID  + +K+R  K 
Sbjct: 62  IDGKPMQLEKNILYFIEDV--QALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKG 119

Query: 136 -VDSIAAALILQEVLDRI 152
            VD I+A +ILQ  L  I
Sbjct: 120 LVDEISATIILQNYLQYI 137


>gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase
 gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 31/147 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           + + D GTK IG A+                + +T TA  L +F   + I  +       
Sbjct: 5   VLAFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIGKCL 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLPLNM+G+E       R F H +  R   V     DERLTT  A+  + 
Sbjct: 50  AEWQPDRVVVGLPLNMDGTEQDLTVRARKFAHRLHGR-FGVAVELQDERLTTTEARAEIF 108

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
                +     KVD I+A LIL+   +
Sbjct: 109 GRGGYKALNKSKVDGISACLILESWFE 135


>gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
 gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase
 gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
          Length = 134

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G KRIG+AI     R A P   +  K        +         +A ++GLP+ 
Sbjct: 9   VIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVVGLPMR 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG E       R F   +  R    P  + +E+L+++ A+Q        + K  Q +D 
Sbjct: 69  LNGEEQALTQPARKFGQRLSGR-YQRPVYYIEEQLSSIEAEQ-------RKTKTDQPMDD 120

Query: 139 IAAALILQEVLD 150
            AA +IL+  LD
Sbjct: 121 HAAQIILENWLD 132


>gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
 gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
          Length = 126

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +ASID+G KRIG+A+S   +    P+  ++RK   Q + ++ +F+    I   I+G P  
Sbjct: 3   LASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFP-- 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
              S        + FV+ +   K     VF +E ++++ A++++      + KR  +VDS
Sbjct: 60  --SSSDDMQKRVKHFVNLL---KFEGEIVFQEENMSSIEAEELM--KGDIKYKRDGRVDS 112

Query: 139 IAAALILQEVL 149
           +AA +IL+  L
Sbjct: 113 LAAKIILERYL 123


>gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 31/151 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           N+ I + D GTK IG AI                +++T +A  L +F   +    +    
Sbjct: 3   NRTIIAFDFGTKSIGAAIG---------------QELTGSARALAAFKAQDGSPDWQKIE 47

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLPLNM+G+E       R F  N +  +  V     DERL+TV A+ 
Sbjct: 48  KLLKEWQPDLVVVGLPLNMDGTEQLVTDQARKFA-NRLHGRFGVQIALHDERLSTVEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L D    R      VDS +A +IL+   +R
Sbjct: 107 NLFDRGGFRALDKGSVDSASAVVILESWFER 137


>gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1]
 gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 128

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G KRIG+A+ + G + A P   +           +   I     A  ++GLPL+
Sbjct: 4   ILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPLH 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+E       R F  N +  +  V  V  DER ++           V + +R +++D 
Sbjct: 64  PDGAEHEMSVRCRRFA-NQLHGRYGVEVVLVDERYSSA----------VIQHQRGEQIDD 112

Query: 139 IAAALILQEVLD 150
            AAA+ILQ+  D
Sbjct: 113 QAAAIILQQYFD 124


>gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
           ymp]
 gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp]
          Length = 144

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           S KP + +   D GTK+IG+A+       A     L  +        + + I      A 
Sbjct: 2   SDKPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAV 61

Query: 72  IIGLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           ++GLPLNM+G+  P   S RA  F   + +    +P    DERLTT  A+   +    S 
Sbjct: 62  VVGLPLNMDGT--PSEMSARAEKFARRL-NGHFNLPAYTHDERLTTFEAKGQRLREGQSG 118

Query: 130 KKRIQKVDSIAAALILQEVLD 150
             R + VD+IAAAL+LQ  L+
Sbjct: 119 GYRERPVDAIAAALLLQGWLE 139


>gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum
           STM815]
 gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase
 gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815]
          Length = 151

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A P   L  +        +   I      A ++GLP++ +
Sbjct: 13  AFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVGLPMHPD 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+   R    + F  N ++ +  +P  + DER ++V A+  +     S  ++   +D+ A
Sbjct: 73  GTPHERTQLAKRF-GNQLNGRFNLPVTWIDERYSSVEAEAGI----RSGTRQAGMLDAEA 127

Query: 141 AALILQEVLDRISF 154
           A +ILQ+ LD +S 
Sbjct: 128 ACIILQQYLDGLSL 141


>gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
          Length = 128

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 29  IGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88
           +G+AI       A+P P  V K       +LL  +       FI+GLPLNM+ SE     
Sbjct: 1   MGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELST 60

Query: 89  STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQ 146
             R F   +  +     ++  DERLTT  A++ L       + +    DS AAAL++Q
Sbjct: 61  RARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQ 117


>gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis
           SK2]
 gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase
 gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax
           borkumensis SK2]
          Length = 133

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT++IG+A  +     A P   L  K       ++ + +      A ++GLPLN
Sbjct: 2   ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61

Query: 79  MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           M+GS+       R F   +H    +KV++     DERL+T  A++         KK   +
Sbjct: 62  MDGSDSESTVRARKFANRLHGRFGKKVWLI----DERLSTREARE-----RTGIKKADSR 112

Query: 136 VDSIAAALILQ 146
           VDS+AA +I +
Sbjct: 113 VDSMAAVIIAE 123


>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
 gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
          Length = 167

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTE-NIAAFIIGL 75
            ID+G  R+G+A+SDP    A P   + R    K      ++ L  + TE  +   ++G+
Sbjct: 21  GIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEVVEIVVGM 80

Query: 76  PLNMNGSEG--PRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           PL ++GS G   R  +   F +   +  +V V +   DER+TTV AQ  L    +  K  
Sbjct: 81  PLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYA--DERMTTVMAQSRLHAAGIDVKSG 138

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +D  AA  ILQ  LDR
Sbjct: 139 RKIIDQAAAVEILQSWLDR 157


>gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
 gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
          Length = 138

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+A+       A     L  +  T    ++   +        ++GL
Sbjct: 3   SETLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE       R F  N +  +  V     DERL+TV A+  L +    R  +   
Sbjct: 63  PLNMDGSEQELTARARKFA-NRLHGRFGVRVELQDERLSTVEARAGLFERGGYRALQKGA 121

Query: 136 VDSIAAALILQEVLD 150
           VDS +A +IL++  D
Sbjct: 122 VDSQSAVIILEDWFD 136


>gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 189

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVT------QTALELLSFITTENIAAFI 72
           ++D+GT RIG+A SD   R A P   + R  K+V       +    ++  +        I
Sbjct: 23  ALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVREYEPVEVI 82

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           IGLP ++ G+    V   R     +          +P  F DERLTTV A Q L    ++
Sbjct: 83  IGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQALHASGLT 142

Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
            +   + VD  AA  ILQ  LD R S+L +S+
Sbjct: 143 ERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174


>gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 117

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L S++  E +   +IG P+ ++G+          FV         +P V++DER T+V A
Sbjct: 20  LSSYVKQEEVERIVIGKPMQLDGNPSENFARVENFVGRWRKSHPAIPIVYYDERFTSVLA 79

Query: 119 QQILIDMNVSRKKRIQK---VDSIAAALILQEVLD 150
            + +++  V +K R +     D I+A +ILQ+ ++
Sbjct: 80  HRAILESGVKKKTRRENKGLADEISATIILQDYMN 114


>gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
           GTL1]
 gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
           GTL1]
          Length = 138

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 8/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
           + ++D+GTKRIG+A +D   RF  P   L   +V    +E L  I  E   +  I+G P 
Sbjct: 8   VIALDVGTKRIGIAHADTAVRFPVPYGTL---EVDGLEIERLREIIAELEPSLIIVGYPR 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N  G    +    + F   +      +  +F DE LT+V A++ L   N    K    +D
Sbjct: 65  NQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQNKPYTKS--DID 120

Query: 138 SIAAALILQEVLDR 151
           + AAA+IL + L+ 
Sbjct: 121 AHAAAIILGDYLEE 134


>gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL001PA1]
          Length = 160

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +ID G  RIG+A SD     A P    +   + V + A  +  +   E     I+GLP+ 
Sbjct: 17  AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG+E     + R     + +    +P  + DER+TT +A + L +   + +K+   +D 
Sbjct: 73  LNGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132

Query: 139 IAAALILQEVLDRISFLESS 158
            AA  IL+ VL+++   +S 
Sbjct: 133 AAAVAILEHVLEQVRLGQSE 152


>gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803]
 gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase
 gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803]
          Length = 135

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D GTKR G+A++D  +  A     L   +  +    L  +   E +   ++G P  
Sbjct: 4   ILALDYGTKRTGVAVTDELKMIASG---LTTVQTPELIKFLEDYFKNEKVERVLVGEPKR 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           M+ +        + F+   + +   +P    DER T+  A Q +ID  + +KKR  K  V
Sbjct: 61  MDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDKALV 120

Query: 137 DSIAAALILQ 146
           D I+A +ILQ
Sbjct: 121 DEISATIILQ 130


>gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20]
          Length = 155

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D+G  RIG+A  D     + P   L R +      E +  +        I+GLP +M 
Sbjct: 4   AFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMG 63

Query: 81  GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G         RA+  ++   + R+V V  V  DERLTTVSA + L    +  +     VD
Sbjct: 64  GGSSSSTKDARAWARDLASRLPRRVCVRLV--DERLTTVSAHRDLHAAGLKERSFRGIVD 121

Query: 138 SIAAALILQEVL 149
             AA +IL++ +
Sbjct: 122 QAAAVVILEQAI 133


>gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum]
          Length = 171

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTE-NIA 69
           P+  ID G  R+GLA+SD   RF+ P         FL   ++   +   L  I TE  I 
Sbjct: 17  PLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKKIQ 76

Query: 70  AFIIGLPL-NMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTT--VSAQQILID 124
             + G+P  +++G   P+   +  FV    +I      P   WDE LT+  + ++++   
Sbjct: 77  GIVFGVPWYHLSGDPNPK---SEVFVEYARLIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133

Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
              SR  K+    +D  +A LILQ  LD  
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163


>gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688]
 gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688]
          Length = 172

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +     AHP   +  +        + + I        I+GLPL+++
Sbjct: 29  AFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLIVGLPLSLD 88

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E       R F   + D +  +P V  DERL++  A   L +  V  +K+   +D +A
Sbjct: 89  GEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQKVMLDQVA 147

Query: 141 AALILQEVLDRISFLESSK 159
           A  ILQ   D +S L  ++
Sbjct: 148 AQHILQSYFDTLSSLSVAQ 166


>gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
 gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
          Length = 135

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G ++IG+A+     R A P   L  +        + + I     +A ++GLP  M+
Sbjct: 5   GFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPFQMD 64

Query: 81  GSE---GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            +E    PRVH         ++ +  +P    DERLT+  A + L + +  R   ++ VD
Sbjct: 65  DTEVAWSPRVHR----FARQLEGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAVD 119

Query: 138 SIAAALILQEVL 149
           ++AAALIL+  L
Sbjct: 120 ALAAALILETWL 131


>gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999]
          Length = 137

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 1/126 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GTK IG+A+       A P   +           +          A ++GLPLNM+
Sbjct: 6   AFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGLPLNMD 65

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E       R F   +  R     F   DERLTT  A+  L ++   +K    KVDS++
Sbjct: 66  GTEQEMTLRARKFGRRISARCKSQVFEV-DERLTTTDAKARLFELGGYKKLSKDKVDSVS 124

Query: 141 AALILQ 146
           A +I +
Sbjct: 125 ACVIFE 130


>gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
           HTCC2559]
          Length = 135

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G KR G+A++D  +  A      VR    ++ L+   +   E +   +IG P  
Sbjct: 4   ILAIDYGAKRTGIAVTDELKLIASGLT-TVRTHDLESFLK--DYFEKEKVELVLIGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
           ++G+          F++    +KV+  + F   DER T+  A Q +ID  + +K+R  K 
Sbjct: 61  VDGTHSENEERIIHFINRF--KKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNKA 118

Query: 136 -VDSIAAALILQEVLDR 151
            VD I+A +ILQ  L R
Sbjct: 119 LVDEISATIILQTYLYR 135


>gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase
 gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 182

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
            +D+GT RIG+A+SD   R A P   + R+     +       LL  I   +     +GL
Sbjct: 20  GLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDAVEVAVGL 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR-------KVYVPFVFWDERLTTVSAQQILIDMNVS 128
           P ++ G+    V   +     +  R       K   P    DERLTTV A   L    VS
Sbjct: 80  PRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSALRASGVS 139

Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154
            K+    +D  AA  ILQ  LD   F
Sbjct: 140 EKRGRSVIDQAAAVEILQSWLDARHF 165


>gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii
           23-P]
 gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii
           23-P]
          Length = 151

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
           I +ID G KR G+A++D  +  A           T    ELL F+    + E +   +IG
Sbjct: 18  ILAIDFGKKRTGIAVTDELQIIASGL-------TTVNTDELLPFLKEYSSKEKVGLILIG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P  M+ S+         F+  +      +P    DER T+  A Q +ID  + +K+R  
Sbjct: 71  HPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQTMIDGGMKKKQRRN 130

Query: 135 K--VDSIAAALILQEVL 149
           K  VD I+A +ILQ  L
Sbjct: 131 KAMVDEISATIILQSYL 147


>gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 142

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTENIAAFIIGLPLNM 79
             D+GTKR G+AI++     A     +   K   T  +EL   I + NI  FI+GLP + 
Sbjct: 8   GFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLPFDK 67

Query: 80  NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            G E       ++F   + +R ++ V F+  DE L++  A+++L   +     +   VD 
Sbjct: 68  QGKEQIMTFIAKSFGKKLKNRYQIEVEFI--DEYLSSNEAKKLLKYNHHHHNAQRGNVDK 125

Query: 139 IAAALILQEVLDRISF 154
            ++ LILQ  L+   F
Sbjct: 126 QSSQLILQTWLNEKKF 141


>gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
 gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
          Length = 151

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G +RIGLA  D       P P L R    Q    L +     N+   ++GLPLN  
Sbjct: 3   SLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLNDQ 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           G    + H  R +    I R + +P  F +E  ++ +A +
Sbjct: 63  GQPTDQAHHCRRYG-RRIARDLGLPLAFVNEHSSSWAAAE 101


>gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           3655]
 gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           6P18H1]
 gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           3655]
 gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           6P18H1]
          Length = 139

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG AI                + +T TA  L +F   + I  +         
Sbjct: 7   AFDFGTKSIGCAIG---------------QSITGTAQTLPAFKAQDGIPNWEAIEKCLKE 51

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPLNM+G+E       R F  N +  +  V     DERLTT  A+  + + 
Sbjct: 52  WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNIHLQDERLTTTQARSEIFER 110

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
              +  +  K+D ++A LIL+   +   +
Sbjct: 111 GGFKALKKGKIDGVSACLILESWFEYAEY 139


>gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
 gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
          Length = 214

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R GLA+   GR    PRP  V K +  +  L LL     +     IIGLP++ 
Sbjct: 76  GVDLGDARTGLAV---GRGITLPRPLTVLKLRGQKLELTLLDVARQQEADELIIGLPVSA 132

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+ V  +  +        +  DE  T+  A + +I   V +  R  + D
Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192

Query: 138 SIAA 141
           + AA
Sbjct: 193 AYAA 196


>gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd
           KW20]
 gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           86-028NP]
 gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           22.1-21]
 gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittAA]
 gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittHH]
 gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittII]
 gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           R3021]
 gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittGG]
 gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
 gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031]
 gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
           ATCC 11116]
 gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase
 gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase
 gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase
 gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae
           86-028NP]
 gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           22.1-21]
 gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittAA]
 gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittHH]
 gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittII]
 gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           22.4-21]
 gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittGG]
 gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae
           10810]
 gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
 gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
 gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031]
 gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
 gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
           ATCC 11116]
          Length = 139

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG AI                + +T TA  L +F   + I  +         
Sbjct: 7   AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPLNM+G+E       R F  N +  +  V     DERLTT  A+  + + 
Sbjct: 52  WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNVHLQDERLTTTQARSEIFER 110

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
              +  +  K+D ++A LIL+   +   +
Sbjct: 111 GGFKALKKGKIDGVSACLILESWFEYAEY 139


>gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 146

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + IT     A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138
           G+  P   S RA      ++ +  V     DERLTT  A+ + +         R   VD+
Sbjct: 69  GT--PSEMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126

Query: 139 IAAALILQEVLD 150
           IAAAL+LQ  LD
Sbjct: 127 IAAALLLQGWLD 138


>gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittEE]
 gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           7P49H1]
 gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
 gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase
 gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittEE]
 gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           7P49H1]
 gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
          Length = 139

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 31/149 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG AI                + +T TA  L +F   + I  +         
Sbjct: 7   AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPLNM+G+E       R F  N +  +  V     DERLTT  A+  + + 
Sbjct: 52  WKPDVVIVGLPLNMDGTEQNLTLLARKFA-NRLQGRFGVNVHLQDERLTTTQARSEIFER 110

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
              +  +  KVD I+A LIL+   +   +
Sbjct: 111 GGFKALKKGKVDGISACLILESWFECTEY 139


>gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202]
 gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase
 gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium
           acnes KPA171202]
          Length = 160

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +N
Sbjct: 17  AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 74

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  A
Sbjct: 75  GTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 134

Query: 141 AALILQEVLDRISFLESS 158
           A  IL+ VL+++   +S 
Sbjct: 135 AVAILEHVLEQVRLGQSE 152


>gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas
           tunicata D2]
 gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas
           tunicata D2]
          Length = 149

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GT+ IG+A+       A P   +  +       E+ + +        ++GLPLN
Sbjct: 14  VLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+        + F  N +     +P    DERLTT  A+  L      +K     VDS
Sbjct: 74  MDGTNQEVTFQAKKFA-NRLHNNYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGNVDS 132

Query: 139 IAAALILQEVLDRISFLESSKG 160
           ++A LIL+      S+ E+  G
Sbjct: 133 MSALLILE------SYFENQYG 148


>gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
 gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G  R GLA++D  +  A     +    +      L  + T E++  F++G P  
Sbjct: 4   ILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDF---LKDYTTKESVELFLVGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN            F+  +     ++P    DER T+  A Q +ID  + +K+R  K  V
Sbjct: 61  MNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNKALV 120

Query: 137 DSIAAALILQEVL 149
           D I+A +ILQ  L
Sbjct: 121 DEISATIILQSYL 133


>gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis
           ATCC BAA-381]
 gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 127

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 9/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
           A +D+G KRIG+A++    +   P+  ++RK   Q A E+   +    +   ++G+PL  
Sbjct: 5   AGLDVGLKRIGVALAFD--KIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPL-- 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            GS    +        ++++ K  +  +F DE  ++V A ++      S KK+  K+DS+
Sbjct: 61  GGSSEDEMKRRITHFCSLLNFKGEI--IFMDESYSSVEADEM---RQFSGKKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA +IL+  L
Sbjct: 116 AAMVILKRYL 125


>gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4]
 gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4]
          Length = 172

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +     AHP   +  +        + + I        I+GLPL+++
Sbjct: 29  AFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLIVGLPLSLD 88

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E       R F   + D +  +P V  DERL++  A   L +  V  +K+   +D +A
Sbjct: 89  GEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQKVMLDQVA 147

Query: 141 AALILQEVLDRISFL 155
           A  ILQ   D +S L
Sbjct: 148 AQHILQSYFDTLSSL 162


>gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187]
 gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165]
 gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137]
 gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187]
 gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165]
 gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137]
 gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266]
          Length = 160

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +N
Sbjct: 17  AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 74

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  A
Sbjct: 75  GTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 134

Query: 141 AALILQEVLDRISFLESS 158
           A  IL+ VL+++   +S 
Sbjct: 135 AVAILEHVLEQVRLGQSE 152


>gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
 gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase
 gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
          Length = 141

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 11/150 (7%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +KP   I  ID GTKRIGLA++DP + FA P        +     EL   +  + +   +
Sbjct: 1   MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTFEPGGLHH---ELRRIMQGDTVDLAV 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P+  +GS          FV  +      +     DE  ++  A +IL     SRK R
Sbjct: 58  VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117

Query: 133 IQK--VDSIAAALILQEVLDRISFLESSKG 160
            +K  +DS AA ++L        FLE ++G
Sbjct: 118 REKGRLDSAAACVLLTR------FLEENRG 141


>gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 146

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + IT     A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138
           G+  P   S RA      ++ +  V     DERLTT  A+ + +         R   VD+
Sbjct: 69  GT--PSDMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126

Query: 139 IAAALILQEVLD 150
           IAAAL+LQ  LD
Sbjct: 127 IAAALLLQGWLD 138


>gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC3088]
 gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC3088]
          Length = 139

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G ++IG+A+ +   + A P   L  +       +L + +     A  ++G P N
Sbjct: 4   VLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGEPSN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G++       R F  N I  +  V     DERL++  A+Q   +M      +   +D+
Sbjct: 64  MDGTDSDMAARARKFA-NRIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTPIDA 122

Query: 139 IAAALILQEVLDRISFLESSK 159
           +AA +ILQ      S+ E+++
Sbjct: 123 LAAMIILQ------SYFETAQ 137


>gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL013PA1]
 gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL074PA1]
 gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA1]
 gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA2]
 gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL087PA2]
 gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL083PA1]
 gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL025PA1]
 gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL059PA1]
 gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL046PA2]
 gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL036PA1]
 gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL036PA2]
 gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL063PA1]
 gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL063PA2]
 gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL007PA1]
 gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL056PA1]
 gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL086PA1]
 gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA4]
 gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL050PA1]
 gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL050PA3]
 gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL036PA3]
 gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL067PA1]
 gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL027PA1]
 gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL002PA1]
 gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL002PA2]
 gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL082PA1]
 gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL037PA1]
 gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL053PA1]
 gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL045PA1]
 gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL072PA2]
 gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA1]
 gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA2]
 gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA3]
 gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL053PA2]
 gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL078PA1]
 gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL027PA2]
 gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL002PA3]
 gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL072PA1]
 gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL038PA1]
 gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL059PA2]
 gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL046PA1]
 gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL030PA1]
 gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL030PA2]
 gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL096PA2]
 gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL097PA1]
 gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL096PA3]
 gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL013PA2]
 gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL043PA2]
 gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL043PA1]
 gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL087PA3]
 gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL092PA1]
 gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL083PA2]
 gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL025PA2]
 gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL020PA1]
 gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL087PA1]
 gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL099PA1]
          Length = 147

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +N
Sbjct: 4   AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  A
Sbjct: 62  GTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 121

Query: 141 AALILQEVLDRISFLESS 158
           A  IL+ VL+++   +S 
Sbjct: 122 AVAILEHVLEQVRLGQSE 139


>gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 141

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 8/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           I  ID G    GL+I+DP ++FA    F +    T+  +  L+  I  + I   +IGLP 
Sbjct: 4   ILGIDYGKVITGLSITDPLQKFA----FGLNAIPTKNLMSFLAILIAKKPIKKIVIGLPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            +N        S + F+     +   +  V  DER T+  A   +I++ + +K+R QK  
Sbjct: 60  TLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRR-QKGL 118

Query: 136 VDSIAAALILQEVLDR 151
           ++ I+A +ILQ  L +
Sbjct: 119 INKISATIILQSYLTK 134


>gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
 gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
          Length = 131

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIGLAI    ++   P   + R    Q +LELL  + T+     I+GLP  
Sbjct: 2   IIACDIGLKRIGLAIY--AQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
                    ++TR  V + I+   + P ++ +E  ++V A   L  ++  ++++  K   
Sbjct: 58  ------HACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111

Query: 136 VDSIAAALILQEVL 149
           +DS+AA  IL+  L
Sbjct: 112 LDSLAACEILRRYL 125


>gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase
 gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 149

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 39/167 (23%)

Query: 11  KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           K+ KP   + +   D GTK IG+AI                +++T +A  L +    + I
Sbjct: 4   KNFKPQGQRTVMGFDFGTKSIGIAIG---------------QELTGSASSLKAVKAQDGI 48

Query: 69  AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113
             +               ++GLPLNM+G+        + F  N +     +P    DERL
Sbjct: 49  PNWDDIAVQVNEWQPDLMVVGLPLNMDGTAQEVTFKAKKFA-NRLHNHYAIPVETQDERL 107

Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           TT  A+  L +    +     KVD+++A +IL+      SF E+S G
Sbjct: 108 TTADAKARLFEQGGYKNLGKGKVDNMSAVIILE------SFFETSYG 148


>gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15]
          Length = 131

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GT+RIG+A+         P   +  +       ++ S +        ++GLPLNM+
Sbjct: 2   AFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNMD 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            +E       R F   +  R  +VP    DERLT+  A+  ++    SR      VD  A
Sbjct: 62  DTENDMCARARKFGKRLHGR-YHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDRA 120

Query: 141 AALILQ 146
           A LIL+
Sbjct: 121 AVLILE 126


>gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
           30120]
 gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
           30120]
          Length = 139

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 31/146 (21%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG+A+                +++T TA  L S   ++    +         
Sbjct: 8   AFDFGTKSIGVAVG---------------QEITGTARALTSLKASDGRPDWSQIEKLLKE 52

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPLNM+G+E       R F  N I  +  V     DERL+TV A+  L + 
Sbjct: 53  WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVQVQLHDERLSTVEAKAGLFEQ 111

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
              R     KVDS +A +IL+   ++
Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137


>gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis
           SK1302]
 gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis
           SK1302]
          Length = 61

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 104 VPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVDSIAAALILQEVLDR 151
           +P  + DERLTTV+A+++LI+  ++SR KR + +D +AA LILQ  LDR
Sbjct: 11  LPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59


>gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus
           ATCC 51449]
 gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase
 gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 138

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  I + D+G KRIGLA     +    P P ++R    Q A EL + +   NI   ++G+
Sbjct: 2   NHCILACDVGLKRIGLATLK--QEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +G E     + +   H +          F +E  T+ +A Q L  M    + R QK
Sbjct: 60  P---SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116

Query: 136 ---VDSIAAALILQEVL 149
              +DS++A  ILQ  +
Sbjct: 117 DGRIDSLSACEILQRYI 133


>gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 142

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTENIAAFIIGLPLNM 79
             D+GTKR G+AI++     A     +   K   T  +     I+  NI  F++GLP N 
Sbjct: 8   GFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGLPFNQ 67

Query: 80  NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            G E       ++F + + +R ++ V F+  DE L++  A+++L   +     +   VD 
Sbjct: 68  QGKEQTMTFIAKSFGNKLKNRYQIEVEFI--DEYLSSNEAKKLLKYNHHHHNAQRDDVDK 125

Query: 139 IAAALILQEVLDRISF 154
            ++ LILQ  L+   F
Sbjct: 126 QSSQLILQTWLNEKRF 141


>gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
 gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
          Length = 142

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            F++G+P NM+GSE   V   R F   +  R   +P    DERLTT  A Q +   +  +
Sbjct: 56  GFVVGIPYNMDGSESQMVVRARKFRKRLHGR-FGLPAEEADERLTTREAWQHMNPASSLK 114

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           K +   +DS+AA +ILQ  L++
Sbjct: 115 KAKADDLDSVAAQIILQSWLEQ 136


>gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9312]
 gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase
 gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9312]
          Length = 153

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S D+G KRIGLA  DP    ++  P + R +  +    + + I   N+
Sbjct: 1   MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
             FI+GLPL+  G   P+      +   ++  ++ +PF + +E  +T  S+ +  I    
Sbjct: 61  TGFIVGLPLDEKGKMTPQAIDCMNY-GQLLSNELKLPFSYVNEHSSTWESSNRFGI---- 115

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +K +   +DS AA +IL++ +     LE   G
Sbjct: 116 -KKDKSGLIDSFAAKVILEQWIKEGPELEELAG 147


>gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase
 gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila]
          Length = 140

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI         P   +          ++   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N +  + +    F DERLTT  A+  L +    R      
Sbjct: 63  PLNMDGTEQEITVRARKF-GNRLHGRFWQAVEFKDERLTTTDARARLFERGGYRALEKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD ++A LIL+  ++
Sbjct: 122 VDGVSAQLILEAWME 136


>gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
 gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
          Length = 136

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 19/140 (13%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G  R G+A++D  +  A     +  K++      L  +I  E +   I+G P  MN
Sbjct: 6   AIDFGKVRTGIAVTDELQIIASGLTTVATKELITF---LKDYIAKEKVDKIIVGEPKQMN 62

Query: 81  GSEG-------PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
            +         P +    A   NMI  +        DER T+  A + +ID  +++KKR 
Sbjct: 63  NTASESEVLIVPFLEKLTAVFPNMIIER-------EDERFTSKMAFKTMIDSGLNKKKRK 115

Query: 134 QK--VDSIAAALILQEVLDR 151
            K  VD I+A +ILQ  L R
Sbjct: 116 NKALVDEISATIILQSYLSR 135


>gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
 gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
          Length = 139

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 31/146 (21%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG+A+                +++T TA  L S    +    +         
Sbjct: 8   AFDFGTKSIGVAVG---------------QEITGTARSLASLKANDGRPDWQQIEKLLKE 52

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPLNM+G+E       R F  N I  +  V     DERL+TV+A+  L + 
Sbjct: 53  WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVAAKAELFER 111

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
              R     KVDS +A +IL+   ++
Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137


>gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
 gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
          Length = 140

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+AI       A+P   +          E+   I        ++GLPLN
Sbjct: 6   VLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       + F  N I  +  V     DERLTT  A+  L ++   +     +VD+
Sbjct: 66  MDGTEQEITQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVDA 124

Query: 139 IAAALILQEVLDRI 152
           ++A LI++   + +
Sbjct: 125 MSAVLIIESYFETM 138


>gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
 gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
          Length = 164

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           +   D G +RIG+A+ +     A   P + +  +  +   E +S +  E      I+GLP
Sbjct: 32  VLCFDFGEQRIGVAVGE--HLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+++G+E       + F   +  R   +P V  DER ++V A  +L    +  + + + +
Sbjct: 90  LSLDGAETSVTQLCKKFARRLNGR-FNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148

Query: 137 DSIAAALILQ 146
           D +AA  ILQ
Sbjct: 149 DQVAAQTILQ 158


>gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 154

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A        AHP   +  +   +    +   I        ++G
Sbjct: 9   PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E       R F   +  R   +P  + DERLT++ A+ +L +  V  +K+  
Sbjct: 69  LPVHSDGTEHELTRLARKFGRRLHGR-FGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127

Query: 135 KVDSIAAALILQ 146
             DS+AA  ILQ
Sbjct: 128 VSDSVAAQAILQ 139


>gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
 gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
          Length = 140

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+AI        +P   +          E+   I        ++GLPLN
Sbjct: 6   VLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       + F  N I  +  V     DERLTT  A+  L ++   +     +VD+
Sbjct: 66  MDGTEQEMTQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVDA 124

Query: 139 IAAALILQEVLDRI 152
           ++A LI++   + +
Sbjct: 125 MSAVLIIESYFENL 138


>gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S]
 gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
           33707]
 gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S]
 gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
           33707]
          Length = 150

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 28  RIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLPLNMNGSE 83
           RIG+A  DP    A P   + R K           +++ +        I+GLP  + G  
Sbjct: 2   RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
           G       AF   +      VP    DERLTTV+A + L +  V  K +   +D  AA  
Sbjct: 62  GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121

Query: 144 ILQEVLDRIS 153
           ILQ  LD  S
Sbjct: 122 ILQGWLDERS 131


>gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans
           PsJN]
 gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase
 gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN]
          Length = 146

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           + D G KRIG+A+ +   R A P   +V+ +  +   E +  +  E    A ++GLP + 
Sbjct: 13  AFDYGEKRIGVAVGNSLTRRARPL-VIVQNRSREYRFEAVGKLIAEWKPDALVVGLPFHP 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+        + F  N ++ +  +P  + DER ++V A+  +   N     R   +D+ 
Sbjct: 72  DGAPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAKAEIRAGN----GRADMLDAE 126

Query: 140 AAALILQEVLDRIS 153
           AA++ILQ+ LD +S
Sbjct: 127 AASIILQQYLDGLS 140


>gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
 gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
          Length = 133

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT++IG+A  +     A P   L  K       ++ + +      A ++GLPLN
Sbjct: 2   ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61

Query: 79  MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           M+GS+       R F   +H    +KV++     DERL+T  A++         +K   +
Sbjct: 62  MDGSDSESTARARKFANRLHGRFGKKVWLV----DERLSTREARE-----RTGIQKADPR 112

Query: 136 VDSIAAALILQ 146
           VDS+AA +I +
Sbjct: 113 VDSMAAVVIAE 123


>gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
           KB13]
 gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
           KB13]
          Length = 161

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L   DL +  K    + + DLG K+ G+A+ +   + +        K   Q   ++ 
Sbjct: 1   MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVS 117
             +        ++GLP N + S     + T  F  N    I++ + +P  F +E  ++ S
Sbjct: 61  QLVNEWQPIYLVLGLPSNRDSS----ANETTKFCLNTAKEIEKNINLPIFFVNENYSSTS 116

Query: 118 AQQILIDM-NVSRKKRIQKVDSIAAALILQEVLDRI 152
           A++++ D+ N  +K  I  VD IAA +ILQ   + +
Sbjct: 117 AEELIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152


>gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 92  AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           +FV +++ ++  +   + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ  LD
Sbjct: 5   SFV-DLLKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQTYLD 62


>gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae]
 gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli]
 gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae]
 gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes]
 gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli]
          Length = 140

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   L          E+   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G++       R F  N +  +   P  F DERLTT  A+  L +    +      
Sbjct: 63  PLNMDGTDQEITVRARKF-GNRLHGRFGKPVEFKDERLTTTDARARLFERGGYKALDKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD ++A LI++  ++
Sbjct: 122 VDGVSAQLIVEAWME 136


>gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM
           4541]
 gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM
           4541]
          Length = 139

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 31/146 (21%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG+A+                +++T TA  L S    +    +         
Sbjct: 8   AFDFGTKSIGVAVG---------------QEITGTARALTSLKANDGRPDWQQIEKLLKE 52

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPLNM+G+E       R F  N I  +  V     DERL+TV A+  L + 
Sbjct: 53  WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVQVKLHDERLSTVEAKAGLFEQ 111

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
              R     KVDS +A +IL+   ++
Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137


>gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
 gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
          Length = 138

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  RIG+A  DP    A     + R K T     +   +  E     ++G+P +++
Sbjct: 6   GLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKVVVGMPKSLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQKVD 137
           G++  +V     FV  +      +  +F DER TT  A+  L   N S+   K+R + VD
Sbjct: 65  GTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYL--KNYSKKNGKERRKVVD 122

Query: 138 SIAAALILQEVLD 150
            +AA++ILQ+ LD
Sbjct: 123 MVAASIILQKYLD 135


>gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales
           bacterium GD 1]
 gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales
           bacterium GD 1]
          Length = 131

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +IDLG KRIGLA S   +    P P ++RK   Q + E+   +    + A +IG+PL   
Sbjct: 5   AIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVPL--G 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDSI 139
           GS    +    A   N+++ +  +  ++ DE  +++ A+ ++  ++   R  RI   DSI
Sbjct: 62  GSSEDEMRRRIAHFMNLVNFEGEI--LYQDEAGSSLEAENMMKGEIKYIRDGRI---DSI 116

Query: 140 AAALILQEVL 149
           +A +ILQ  L
Sbjct: 117 SAMIILQRYL 126


>gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans
           LB400]
 gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
 gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase
 gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400]
 gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
          Length = 146

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           + D G KRIG+A+ +   + A P   +V+ +  +   E +  +  E    A ++GLP++ 
Sbjct: 13  AFDYGEKRIGVAVGNSLTKSARPL-VIVQNRSREYRFEAVGKLIAEWKPNALVVGLPMHP 71

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+        + F  N ++ +  +P  + DER ++V A+  +   N     R   +D+ 
Sbjct: 72  DGTPHEMTQLAKRF-GNQLNGRFNLPVTWIDERYSSVEAKAEIRAGN----GRADMLDAE 126

Query: 140 AAALILQEVLDRIS 153
           AA++ILQ+ LD +S
Sbjct: 127 AASIILQQYLDGLS 140


>gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 147

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I + D GT+++G+A+       A P      K       EL   I       F++GLP
Sbjct: 8   QMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPNVFLVGLP 67

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+ SE       R F    +  +  +     DERL+T +A+  L   +   + +    
Sbjct: 68  LNMDDSESELSARARKFARR-LRHQTNIETWMVDERLSTRAARDELSHYHAQGRGKKVSA 126

Query: 137 DSIAAALILQ 146
           DS+AA L ++
Sbjct: 127 DSLAATLFIE 136


>gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 168

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G KRIG+A+ +   R AHP   +  +  T+    + + I        ++G P +
Sbjct: 12  VLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRPTS 71

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G+        R F   +  R   +     +ERL++  AQ+ L    ++ +   + +D+
Sbjct: 72  LDGTPHAMTARCRRFADQLRGR-FGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHLDA 130

Query: 139 IAAALILQEVLDRI 152
           +AA LILQ   D +
Sbjct: 131 VAAQLILQSYFDSV 144


>gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase
 gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato T1]
 gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 146

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           G+  P   S RA  F   +  R     +   DERLTT  A+ + +         R   VD
Sbjct: 69  GT--PSEMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  LD
Sbjct: 126 AIAAALLLQGWLD 138


>gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505]
 gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505]
          Length = 171

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
            +P   IA  D+G  RIG+A  D     + P   L R +      E +  +        I
Sbjct: 13  FRPGVRIA-FDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVI 71

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           +GLP +M G         R +  ++  R   +V V  V  DERLTTVSA + L    +  
Sbjct: 72  VGLPKHMGGGSSSSTRDARQWARDLASRLPQRVCVRLV--DERLTTVSAHRDLHAAGLKE 129

Query: 130 KKRIQKVDSIAAALILQEVL 149
           +     VD  AA +IL++ +
Sbjct: 130 RSFRGIVDQAAAVVILEQAI 149


>gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
           12066]
 gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
           12066]
          Length = 140

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G   IG+A+ +     A P   +  +     A ++ +       +  ++G P+N
Sbjct: 3   VLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPIN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQ-ILIDMNVSRKKRIQ 134
           M+G++       R F + + D+   KVY    F DERLTT  A++ I             
Sbjct: 63  MDGTKEELTFKARKFGNRLADKFKLKVY----FKDERLTTADAKERIFSQYGYKGLASKG 118

Query: 135 KVDSIAAALILQEVLDR 151
           K+D ++AALIL+   + 
Sbjct: 119 KIDCVSAALILEAFFEE 135


>gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
           C6786]
          Length = 146

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
           +L  +  + + D G KRIG+A+ +   R A      P L R+   +   EL++    +  
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F  N ++ +  +P  + DER ++V A+  L     +
Sbjct: 62  -ALVVGLPLHPDGAPHEMTQQAKRF-GNQLNGRFNLPVSWVDERYSSVEARADL----RA 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRI 152
           R     +VD+ AA +ILQ+ LD +
Sbjct: 116 RGSGADRVDAEAARIILQQYLDEL 139


>gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
 gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
          Length = 127

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 12/134 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D+G KRIGLA+    +    P P ++R    Q   +L  F+  +     ++GLP N
Sbjct: 1   MVGCDVGLKRIGLALYT--QETILPMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP-N 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
              ++      TRA V + I+   + P  + DE  ++  AQ+ +  +   ++++ +K   
Sbjct: 58  ACYTD------TRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGI 111

Query: 136 VDSIAAALILQEVL 149
           +DS+AA ++L+  L
Sbjct: 112 LDSLAACILLERYL 125


>gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans
           DMS010]
 gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans
           DMS010]
          Length = 125

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 27  KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86
           K IG+A+       A+P   +  +       ++   +        I+GLPLNM+G+E   
Sbjct: 2   KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61

Query: 87  VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKVDSIAAALIL 145
             + R F  N +  +  +P  + DERLTT  A  Q+ I   +  ++R   VD ++A LIL
Sbjct: 62  TAAARRF-GNRLHGRFNIPVEWQDERLTTYEALDQMGIRSKMDTRQR-SDVDQLSAQLIL 119

Query: 146 QEVLDR 151
           Q  L++
Sbjct: 120 QSWLNQ 125


>gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
           EO147]
          Length = 146

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITT 65
           +  +L  +  + + D G KRIG+A+ +   R A      P L R+   +   EL++    
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
           +   A ++GLPL+ +G+        + F  N ++ +  +P  + DER ++V A+  L   
Sbjct: 61  D---ALVVGLPLHPDGAPHEMTQQAKRF-GNQMNGRFNLPVSWVDERYSSVEARADL--- 113

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
             +R     +VD+ AA +ILQ+ LD +
Sbjct: 114 -RARGSGADRVDAEAARIILQQYLDEL 139


>gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase
 gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 140

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   +          ++   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           PLNM+G+E       R F   +H    ++V     F DERLTT  A+  L +    R   
Sbjct: 63  PLNMDGTEQEITVRARKFGNRLHGRFGKQVE----FKDERLTTTDARARLFERGGYRALE 118

Query: 133 IQKVDSIAAALILQEVLD 150
              VD ++A LIL+  ++
Sbjct: 119 KGSVDGVSAQLILEAWME 136


>gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           syringae FF5]
 gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase
 gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv.
           syringae B728a]
 gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit
           7]
 gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
 gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
 gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 146

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           G+  P   S RA  F   +  R     +   DERLTT  A+ + +         R   VD
Sbjct: 69  GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  LD
Sbjct: 126 AIAAALLLQGWLD 138


>gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
 gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
          Length = 138

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G  RIG+A  DP    A     + R K T     +   +  E     ++G+P +++
Sbjct: 6   GLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKIVVGMPKSLD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQKVD 137
           G++  +V     FV  +      +  +F DER TT  A+  L   N S+   K+R + VD
Sbjct: 65  GTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYL--KNYSKKNGKERRKVVD 122

Query: 138 SIAAALILQEVLD 150
            +AA++ILQ+ LD
Sbjct: 123 MVAASIILQKYLD 135


>gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994]
 gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994]
          Length = 130

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +IDLG KRIGLA+S  G     P P + RK   Q A ++   +        ++G+P+ 
Sbjct: 4   IIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGIPMG 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
               +  R    R   H M   +      + DE  ++  A++++      R KR  ++DS
Sbjct: 63  STTEDEMR----RRVAHFMNLVEFNGEIAYQDESHSSKEAEELM--KGDIRYKRDGRIDS 116

Query: 139 IAAALILQEVL 149
           ++A +IL+  L
Sbjct: 117 LSAKIILERYL 127


>gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase
 gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 146

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           G+  P   S RA  F   +  R     +   DERLTT  A+ + +         R   VD
Sbjct: 69  GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRNNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  LD
Sbjct: 126 AIAAALLLQGWLD 138


>gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J]
 gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase
 gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J]
          Length = 143

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+P++ +
Sbjct: 20  AFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E P +   + F + ++ R   +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957]
 gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957]
          Length = 144

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   I+      F++G+P++  
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVGFVVGMPVHPE 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G + P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEDQPMIKLAKRF-GNQLRGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 146

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138
           G+  P   S RA      ++ +  V     DERLTT  A+ + +         R   VD+
Sbjct: 69  GT--PSDMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126

Query: 139 IAAALILQEVLD 150
           IAAAL+LQ  LD
Sbjct: 127 IAAALLLQGWLD 138


>gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
 gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
          Length = 144

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   ++      F++G+P++  
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPVGFVVGMPVHPE 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G + P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547]
 gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius
           DSM 20547]
          Length = 161

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT-----ENIAAFII 73
           + ++D+G  R+G+A  DP    A P    V        L  L  +       E     ++
Sbjct: 2   VWAVDVGLARVGVASGDPDGVLATP----VETVAVAPGLTALDRVVQLVRQEERSTGVVV 57

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           GLP +++G E       R +   +  R    V V  V  DERL+TV+A + + +  V  K
Sbjct: 58  GLPRHLDGHESTSAVEARRWATALASRLGPTVRVWLV--DERLSTVAASRGMREAGVRAK 115

Query: 131 KRIQKVDSIAAALILQEVLD 150
           ++  ++D  AA  ILQ  LD
Sbjct: 116 EQRTRIDQAAAVEILQMSLD 135


>gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis E264]
 gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis Bt4]
 gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis E264]
 gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase
 gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia
           thailandensis E264]
          Length = 146

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 13/143 (9%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
           +L  +  + + D G KRIG+AI +   R A      P L R+   +   EL++    +  
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
            A ++GLPL+ +G+  P   + RA    N ++ +  +P  + DER ++V A+  L     
Sbjct: 62  -ALVVGLPLHPDGA--PHEMTQRALRFGNQLNGRFNLPVSWVDERYSSVEARAGL----R 114

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
           +R     +VD+ AA +ILQ+ LD
Sbjct: 115 ARGDAANRVDAEAARVILQQFLD 137


>gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
           16294]
 gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
           16294]
          Length = 132

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +IDLG KRIGLA S   +    P P ++RK   Q + E+   I      A +IG+PL   
Sbjct: 5   AIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVPL--G 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           GS    +        N++D +  V  ++ DE  +++ A+ ++      +  R  +VDS++
Sbjct: 62  GSSEDEMRRRIEHFMNLVDFEGKV--LYQDEAGSSLEAENMM--KGKIKYIRDGRVDSLS 117

Query: 141 AALILQEVL 149
           A +ILQ  L
Sbjct: 118 AMVILQRFL 126


>gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
 gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I ++D G  R G+A++D  +  A      ++   T   L  L +++  E +   ++G P 
Sbjct: 4   ILALDFGKVRTGIAVTDELQIIASG----LKTVATNELLPFLKNYLKQEKVELILLGKPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            M+ S+       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  
Sbjct: 60  QMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNKAL 119

Query: 136 VDSIAAALILQEVL 149
           VD I+A +ILQ  L
Sbjct: 120 VDEISATIILQSYL 133


>gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum
           ATCC 12472]
 gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase
 gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 137

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G +RIG+A+ D      HP   +      +    +   I        ++GLP++ +
Sbjct: 2   AFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHPD 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
           G E      +R F  N +  +  +P    DER T+V A+Q+L +  V +K R QK  +D 
Sbjct: 62  GEEHELSALSRRFA-NRLKGRFGLPVWLVDERYTSVIAEQLLEEAGV-KKGRKQKPALDQ 119

Query: 139 IAAALIL 145
           +AA  IL
Sbjct: 120 VAAQAIL 126


>gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis TXDOH]
          Length = 146

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
           +L  +  + + D G KRIG+AI +   R A      P L R+   +   EL++    +  
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F  N ++ +  +P  + DER ++V A+  L     +
Sbjct: 62  -ALVVGLPLHPDGAPHEMTQQAKRF-GNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R     +VD+ AA +ILQ+ LD
Sbjct: 116 RGDAANRVDAEAARVILQQFLD 137


>gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ]
          Length = 153

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRR-FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I SID G K  GLA   PGR  F   R  ++ +   Q   EL   I  +     ++G+P 
Sbjct: 19  ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
            ++G+E       R F   + ++   +     DE L++ +AQ+ + +    + K   +++
Sbjct: 79  YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138

Query: 137 DSIAAALILQEVL 149
           D +AA +IL++ +
Sbjct: 139 DEVAATIILEDFM 151


>gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase
 gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 151

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 10  VKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP ++ I S+D+G KRIGLA  D      +  P L R++     + +   I   N+
Sbjct: 1   MKYCKPKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+GLPL+  G    +    + +   + + ++ +PF F +E  +T  +          
Sbjct: 61  TGFIVGLPLDEAGGMTSQALDCKTYGEFLFN-ELKLPFSFVNEHSSTWESTNRF----GV 115

Query: 129 RKKRIQKVDSIAAALILQE 147
           +K +   +DS++A +IL++
Sbjct: 116 KKDKSGLIDSLSAKIILEQ 134


>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
 gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
          Length = 239

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            IDLG  R GLAIS  G  F       +R +  +T   LL     E    FIIGLP + +
Sbjct: 78  GIDLGLSRTGLAISK-GFSFKPLTVLELRGQKLET--RLLEIAEDEEADEFIIGLPKSWD 134

Query: 81  GSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           G E  + +  R+    +  R      +VY+     DE  T+  A   +I++ +S+  R +
Sbjct: 135 GKETSQCNKVRSVAGRIAVRAAERGWRVYLQ----DEHGTSTDATYWMINVGLSKGARQK 190

Query: 135 KVDSIAAALILQ 146
            +D+ AA ++L+
Sbjct: 191 SIDAYAAVMVLE 202


>gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15]
          Length = 144

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+P++  
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPE 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G + P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
 gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+P++ +
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEEQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
           DSM 7109]
 gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
           DSM 7109]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 52/111 (46%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G+ RIG+A+SDP    A P   +           ++  I    +   I+GLP+ + 
Sbjct: 28  ALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIVGLPVALR 87

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           G+      +   F  ++ +    +P    DER++T++A Q      VS KK
Sbjct: 88  GNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKK 138


>gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum
           GMI1000]
 gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase
 gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum GMI1000]
          Length = 144

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+P++  
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPE 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G + P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum
           IPO1609]
 gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum IPO1609]
          Length = 144

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   I       F++G+P++  
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFVVGMPVHPE 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G + P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera]
          Length = 213

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 25/128 (19%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +DLG  R GLA+S         + F VR                  +  FIIGLP++ +
Sbjct: 68  GVDLGMSRTGLALS---------KGFSVR--------------PLSEVDEFIIGLPVSDD 104

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           G E P+ +  R+    +  R     +  +  DE  T+  A   +IDM  S+  R   +D+
Sbjct: 105 GKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSIDA 164

Query: 139 IAAALILQ 146
            AA ++L+
Sbjct: 165 YAAMMVLE 172


>gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 132

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D G KR G+A++DP +  A     L   +  +    L S++  E +   +IG P  M+ 
Sbjct: 1   MDYGQKRTGIAVTDPLQMIASG---LTTVQTPELLDFLESYMGEEQVERIVIGEPRRMDN 57

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKVDSI 139
           S        R+F+  +  R   +P    DER ++  A + +I+  M   +++    VD I
Sbjct: 58  SPSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKI 117

Query: 140 AAALILQEVL 149
           +A LILQ  L
Sbjct: 118 SATLILQSYL 127


>gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N]
 gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase
 gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N]
          Length = 131

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +     A P   +  ++  +    + + +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L L  +G + P     R F + +  R  V V  V  DER +++ AQ+ L           
Sbjct: 62  LALATDGGDQPATLRCRRFANQLHGRFGVTVELV--DERGSSMEAQEKLGSHAPD----- 114

Query: 134 QKVDSIAAALILQEVLDRIS 153
              D++AAA+ILQ  LDR++
Sbjct: 115 ---DAMAAAIILQRYLDRLA 131


>gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
 gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
          Length = 145

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            ID G  R GLA +DP    A+P        +  RK+       L   I  E   A ++G
Sbjct: 5   GIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAA---LAGRILEERPDAVVMG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL  +G+E       R  V   + R+V +PF F  E L++ +A++ L ++  + ++   
Sbjct: 62  LPLLTDGTESMTTRQVRN-VTERLKRRVPLPFYFMSELLSSEAAERELREVGRTGRRCKA 120

Query: 135 KVDSIAAALILQEVL 149
            +D  AA  IL+  L
Sbjct: 121 VLDQQAAVRILESFL 135


>gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum MolK2]
 gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum MolK2]
          Length = 144

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   I       F++G+P++  
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFVVGMPVHPE 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G + P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
           17982]
          Length = 162

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GT R+G++  DP      P   L R         L   + + +    I+GLP ++ 
Sbjct: 10  GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHLR 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G EG      R +   +   K  VP V     DER+T+  A   L    +   +    +D
Sbjct: 70  GGEGISAKGARKYARRL---KKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVID 126

Query: 138 SIAAALILQEVLD 150
            +AA +IL++ L+
Sbjct: 127 QVAAQIILEQALE 139


>gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase
 gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
          Length = 141

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + L  +  + + D G K+IG+A+ +   R A     L    V      + + I   N   
Sbjct: 7   RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQ 66

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+G+P+N  G E P +   R F  N ++ +  +P  + DER T+ +A      M  +R+
Sbjct: 67  LIVGMPVNPEGGEQPSMKLARRF-GNQLNGRFGLPVEWVDERYTSRAA-----SMAGARR 120

Query: 131 KRIQKVDSIAAALILQEVLDRI 152
               ++D+ AA +ILQ+  D+ 
Sbjct: 121 G---ELDAEAARIILQQYFDQF 139


>gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D]
 gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D]
          Length = 143

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+P++ +
Sbjct: 20  AFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G E P +   + F  N +  +  +P  + DER ++++AQ      +V        +D+ A
Sbjct: 80  GEEQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130

Query: 141 AALILQEVLD 150
           A +ILQ+  D
Sbjct: 131 ARIILQQFFD 140


>gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase
 gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 140

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   +          ++   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           PLNM+G+E       R F   +H    ++V     F DERLTT  A+  L +    +   
Sbjct: 63  PLNMDGTEQEITVRARKFGNRLHGRFGKQVE----FKDERLTTTDARARLFERGGYKALD 118

Query: 133 IQKVDSIAAALILQEVLD 150
              VD ++A LIL+  ++
Sbjct: 119 KGSVDGVSAQLILEAWME 136


>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
           RM3195]
 gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
           RM3195]
          Length = 127

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++DLG KRIGLA+       A P   ++RK   Q A E+   I    I+  I+GLP    
Sbjct: 6   ALDLGLKRIGLALYVE--NIAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSI 139
            SE   V  T+   H +   +     +F DE  T+  AQ    D+ V+  +K+  K+DS+
Sbjct: 63  ASE---VEMTKRVQHFISLLEFDGEVIFVDEAYTSKEAQ----DLGVANSRKKDGKLDSL 115

Query: 140 AAALILQ 146
           AA ++L+
Sbjct: 116 AALIMLR 122


>gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117]
 gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis
           Re117]
          Length = 157

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIAAFIIGLPLN 78
            +D+G  R+G+A SDP    A P    +R+ V + +    LL  I    +    +G P +
Sbjct: 7   GVDVGLARVGVAASDPSGILATP-VMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65

Query: 79  MNGSEGPRVHSTR----AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           + G+        R    A         + +     DERL+TV+A + L       +   +
Sbjct: 66  LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA  ILQ+VL+
Sbjct: 126 VVDQVAATEILQQVLE 141


>gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16]
 gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase
 gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia
           eutropha H16]
          Length = 141

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + L  +  + + D G K+IG+A+ +   R A     L    V      + + I   N   
Sbjct: 7   RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQ 66

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+G+P+N  G E P +   R F  N ++ +  +P  + DER T+ +A      M  +R+
Sbjct: 67  LIVGMPVNPEGGEQPSMKLARRF-GNQLNGRFGLPVEWVDERYTSRAA-----SMAGARR 120

Query: 131 KRIQKVDSIAAALILQEVLDRI 152
               ++D+ AA +ILQ+  D+ 
Sbjct: 121 G---ELDAEAARIILQQYFDQF 139


>gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda
           SM-A87]
 gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda
           SM-A87]
          Length = 134

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
           + ++D G KR G+A++D  +  A     +     T + L  L  +   E +   ++G P 
Sbjct: 4   VMALDYGVKRTGIAVTDELQMIASGLTTVD----TSSLLNFLEDYFKKEKVETVVVGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             + S          F+    ++   +  V  DER T+  A Q +ID  + +KKR  K  
Sbjct: 60  QKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNKAL 119

Query: 136 VDSIAAALILQEVL 149
           VD ++A +ILQ  L
Sbjct: 120 VDEVSATIILQSYL 133


>gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus
           F0309]
 gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus
           F0309]
          Length = 162

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+GT R+G++  DP      P   L R         L   + + +    I+GLP ++ 
Sbjct: 10  GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHLR 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G EG      R +   +   K  VP V     DER+T+  A   L    +   +    +D
Sbjct: 70  GGEGISAKGARKYARRI---KKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVID 126

Query: 138 SIAAALILQEVLD 150
            +AA +IL++ L+
Sbjct: 127 QVAAQIILEQALE 139


>gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter
           upsaliensis JV21]
 gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter
           upsaliensis JV21]
          Length = 127

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++DLG KRIGLA+       A P   ++RK   Q A E+   I    I+  I+GLP    
Sbjct: 6   ALDLGLKRIGLALYVE--NIAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            SE   V  T+   H +   +     +F DE  T+  AQ + +    + +K+  K+DS+A
Sbjct: 63  ASE---VEMTKRVQHFISLLEFDGEVIFVDEAYTSKEAQGLGV---ANSRKKDGKLDSLA 116

Query: 141 AALILQ 146
           A ++L+
Sbjct: 117 ALIMLR 122


>gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
 gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
          Length = 173

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            +D+G  R+G+A +DP    A P   L R    +  + EL++     ++ A  +GLP+N+
Sbjct: 22  GVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNL 81

Query: 80  NGSEGPRVHST----RAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            G   P          A    +++    VP    DERL+TVSAQ  L
Sbjct: 82  RGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGL 128


>gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803]
 gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803]
          Length = 159

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G +RIGLA  DP        P L R    Q    L +     N+   ++GLPL+  
Sbjct: 3   SLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDDQ 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           G    + H    +    I R + +P  F +E  ++ +A +
Sbjct: 63  GQRTDQAHHCHRYG-QRIARDLGLPLAFVNEHSSSWAAAE 101


>gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
           str. MIT 9202]
          Length = 140

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D+GTKRIGLA  DP    ++  P + R +  Q    + + I   N+  FI+G+PL+  G
Sbjct: 1   MDVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKG 60

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
               +    + +   +++ ++ +PF + +E  +T  +     D    +K +   +DS +A
Sbjct: 61  LMTSQAIDCKNYGQLLLN-ELKLPFSYVNEHSSTWESS----DRFGIKKDKSGLIDSFSA 115

Query: 142 ALILQEVLDRISFLES 157
            +IL++ ++    LE 
Sbjct: 116 KIILEQWIEEGPELEE 131


>gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium
           HTCC2207]
 gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium
           HTCC2207]
          Length = 145

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           ++GLPLNM+ SE    +  R F   +  R  V V  V  DERLT+  A+ +  D      
Sbjct: 63  VVGLPLNMDDSESDLSNRARKFARRLQGRFAVDVEMV--DERLTSREAKSLGRDQGT--- 117

Query: 131 KRIQKVDSIAAALILQEVLD 150
           + + K+D IAA+LILQ  LD
Sbjct: 118 QDLTKIDHIAASLILQSWLD 137


>gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619]
 gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619]
          Length = 141

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G+K+IG+A+       A     L  +       ++   I      A ++GLPLNM+
Sbjct: 9   GFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
           G+  P   S RA  F   +  R   +P    DERLTT  A+   +     R   R   VD
Sbjct: 69  GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
 gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
          Length = 167

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------------VTQTALELLSFITTENI 68
            +D+G  R+G+A  DP    A P   L R +            V  T +E L  I  E +
Sbjct: 11  GVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEERL 70

Query: 69  A-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDM 125
           A A  +GLP +++G+ G  V +  A  +  + ++V  ++     DERLT+ +A   L D 
Sbjct: 71  AVAVYVGLPKHLSGARG--VSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDA 128

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
               ++    +D  AA +IL   L+    L S  G
Sbjct: 129 GRRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163


>gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea
           34H]
 gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase
 gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea
           34H]
          Length = 148

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 12  SLKPNQPIA-----SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           S K   PI        D G K IG+A+       A P   +           L  ++   
Sbjct: 2   STKTKSPIGQRTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEW 61

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
                ++GLPLNM+GSE       + F  N I  +  +   F DERLTT  A++ L    
Sbjct: 62  QPDFIVVGLPLNMDGSEQQLTLDAKKF-GNRIHGRFGIQVEFQDERLTTADAKEQLFARG 120

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
             +  +   +D+ +A LI++   ++
Sbjct: 121 GFKNLKKDNIDAESARLIIESYFEQ 145


>gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis
           MCE9]
 gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis
           MCE9]
          Length = 151

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G K+IG+A+ +   + A P   +    V      + ++I   N    ++GLP+ 
Sbjct: 14  ILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPIT 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           + G E      +R F  N +  +  +P    DER ++V AQ+I               D 
Sbjct: 74  LGGQEQEASRLSRKFA-NQLHGRFNLPVELIDERYSSVEAQEIC--------HCGPDEDH 124

Query: 139 IAAALILQ 146
            AAA+IL+
Sbjct: 125 YAAAVILE 132


>gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus
           525.92]
 gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 127

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++   +ID+G KR+G+A    G     P+  ++RK   Q A E+ + +        ++G+
Sbjct: 2   SEKFMAIDVGLKRVGVAFGTGG--IVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGV 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +  +  R    R   H +   ++    V+ DE  ++  A +I  D      KR  +
Sbjct: 60  PKGGSSEDEMR----RRIEHFVSLLEISAKIVYQDEAFSSFEASEIYTDT-----KRDGR 110

Query: 136 VDSIAAALILQEVL 149
           +DS+AA LIL+  L
Sbjct: 111 LDSVAAMLILKRYL 124


>gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum
           SS9]
 gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase
 gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 142

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+AI       A+P   L  K       ++   +        ++GL
Sbjct: 4   SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLN+ G E   +        N I  +        DERL+TV A+  L +    R      
Sbjct: 64  PLNLEGGELESITPRAKKFANRIHGRFGCVVELHDERLSTVEAKAELFEHGGYRALSKGN 123

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A +IL+   +R
Sbjct: 124 IDSQSAVVILESWFER 139


>gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1]
 gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1]
 gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
 gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1]
 gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1]
 gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1]
 gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
          Length = 141

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G+K+IG+A+       A     L  +       ++   I      A ++GLPLNM+
Sbjct: 9   GFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
           G+  P   S RA  F   +  R   +P    DERLTT  A+   +     R   R   VD
Sbjct: 69  GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
 gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
          Length = 151

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
             D GTK+IG A+       A P    +R        E++  +  E   A  ++G+    
Sbjct: 16  GFDFGTKKIGTAVGQTTTATASPLQ-TIRSINQNPNWEIIGKLIQEWRPAGLVVGISKQA 74

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDS 138
           +GS+ P       F   +  R   +P    DE L+T  A+Q+L D ++VS  K  +  D 
Sbjct: 75  DGSDNPVTPRMLKFCRQLEGR-YQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQDQ 133

Query: 139 IAAALILQEVLDR 151
           +AA LILQ  L+ 
Sbjct: 134 LAAQLILQTWLNE 146


>gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
 gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase
 gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
          Length = 143

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+RIG+A          P   L  +       ++ + +        ++GL
Sbjct: 6   NRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ +E       R F   +  R  +V     DERLT+  A+  ++    SR      
Sbjct: 66  PLNMDDTENEMCARARKFGKRLHGR-YHVTVEMVDERLTSYEAKGEVMAGGGSRDFGRHG 124

Query: 136 VDSIAAALILQ 146
           VD  AA LIL+
Sbjct: 125 VDDRAAVLILE 135


>gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida
           KT2440]
 gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase
 gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida
           KT2440]
          Length = 141

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G+K+IG+A+       A     L  +       ++   I      A ++GLPLNM+
Sbjct: 9   GFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
           G+  P   S RA  F   +  R   +P    DERLTT  A+   +     R   R   VD
Sbjct: 69  GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
 gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID G K+ G A  D   +   P   +      +    L+  I  +NI   + GLPL+
Sbjct: 2   VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E       R F   ++ + V V  VF DE  T+  A  IL      +K + +  D 
Sbjct: 62  DEGKESDWCAEIRRFSEFLL-KSVKVDIVFVDEYGTSKEADFIL--RGKKKKVKNKANDL 118

Query: 139 IAAALILQEVLD 150
           IAA LIL+  L+
Sbjct: 119 IAATLILENYLN 130


>gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
 gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
          Length = 133

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 11/132 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G KRIG AI +   + A P   +  +   +   E+   I     A  ++GLP +
Sbjct: 8   ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+E       R F  N +  +  +  +  DER T+          +V   K  Q  D+
Sbjct: 68  PDGTEHDMTRRCRRFA-NQLHGRFALDTILVDERYTS----------SVLNFKPGQADDA 116

Query: 139 IAAALILQEVLD 150
            AAALILQ+  D
Sbjct: 117 HAAALILQQYFD 128


>gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 135

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAH----PRPFLVRKKVTQTALELLSFITTENIAAFI 72
           Q I ++D+G KRIG+A      +F      P P ++RK   Q A ++ + I  +N    +
Sbjct: 2   QNIIALDIGLKRIGIA------QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILV 55

Query: 73  IGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           IG+P + + S    +   R   H  N+++    +   F DE  ++  A Q +   +   K
Sbjct: 56  IGIPQDGDSS----LEMERRIKHFINLLEIPKGIEICFIDESFSSFEALQKM-QGSKKNK 110

Query: 131 KRIQKVDSIAAALILQEVL 149
           K+   +DS+AA +IL+  L
Sbjct: 111 KKDGSLDSLAALIILERYL 129


>gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           BCC215]
          Length = 146

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +L  +  + + D G KRIG+A+ +   R A     +      Q    +   I      A 
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKPDAL 63

Query: 72  IIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           ++GLPL+ +G+  P   + RA    N ++ +  +P  + DER ++V A+  L     +R 
Sbjct: 64  VVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RARG 117

Query: 131 KRIQKVDSIAAALILQEVLD 150
               +VD+ AA +ILQ+ LD
Sbjct: 118 DAADRVDAEAARVILQQYLD 137


>gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 146

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 30/148 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT----TENIA----- 69
           I + D GTK IG+A+   G++             T T+L +L  I      +NI      
Sbjct: 7   IMAFDFGTKNIGVAV---GQKLT----------CTTTSLNVLHSIAGTPDWKNIELMYNE 53

Query: 70  ----AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLPL ++GSE      ++ F   +   K       +DER TT+ A+    + 
Sbjct: 54  WKPKTLIVGLPLQIDGSEQYITILSKKFAIQL-KNKFNTTVEMYDERFTTLEARSNFYNQ 112

Query: 126 NVSR---KKRIQKVDSIAAALILQEVLD 150
             S+   K +  K+DSIAA +IL+  L+
Sbjct: 113 YCSKFSEKIKKNKIDSIAAEIILKSWLN 140


>gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307]
 gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307]
          Length = 151

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G +RIGLA  DP      P P L R +  Q   +L   +      A ++GLPL+
Sbjct: 12  VLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVVGLPLD 71

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            +G+  P+    R +   +  + + +P  + +E  ++ +A +
Sbjct: 72  PDGAFTPQAEHCRRYGERLA-QSLSLPVAWVNEHSSSWAAAE 112


>gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
           SM9913]
 gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
           SM9913]
          Length = 149

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 45/170 (26%)

Query: 11  KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           K++KP   + +   D GTK IG+AI                +++T +A  L +    + I
Sbjct: 4   KTVKPQGERTVMGFDFGTKSIGIAIG---------------QELTGSATSLKAVKAQDGI 48

Query: 69  AAF---------------IIGLPLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWD 110
             +               ++GLPLNM+G+        + F   +HN     V+      D
Sbjct: 49  PNWDDIAVQVKEWQPDLMVVGLPLNMDGTSQEVTFKAKKFANRLHNHYGIAVHTQ----D 104

Query: 111 ERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ERLTT  A+  L +    +      VD+++A +IL+      SF E+S G
Sbjct: 105 ERLTTADAKARLFERGGYKNLGKGNVDNMSAVIILE------SFFEASYG 148


>gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia
           floridanus]
 gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase
 gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus
           Blochmannia floridanus]
          Length = 142

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 34/150 (22%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELL-------SFITTENI- 68
           I + D GTK+IG+AI                +K+T T  +LE+L       ++   E+I 
Sbjct: 8   IMAFDFGTKKIGIAIG---------------QKITGTTQSLEILPSKFGIPNWKKIEHIF 52

Query: 69  -----AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
                   I+GLPL MNG+       ++ F   +  R K+ V     DER TT+ A+ I 
Sbjct: 53  NVWKPNKLIVGLPLKMNGNTQHITLLSKRFAVQLTHRFKITVEMH--DERFTTIEARSIY 110

Query: 123 ID-MNVSRKKRIQKVDSIAAALILQEVLDR 151
                   +K+   +DSIAA +IL+  L++
Sbjct: 111 FQHFRYYYRKKTTPIDSIAAEIILKSWLNQ 140


>gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
 gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
          Length = 147

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G ++IG+A+       A P   L  +        +   I        I+GLPLN
Sbjct: 16  VFGFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLPLN 75

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+ SE     + R F + +  R  Y   V W DERL+T+ A++ L ++  S   R  ++D
Sbjct: 76  MDQSEQLLTQAARRFGNRLHGR--YGLAVEWVDERLSTIEARERL-NLKPSSLGRHPELD 132

Query: 138 SIAAALILQEVL 149
            +AA  ILQ  L
Sbjct: 133 QVAAQCILQTWL 144


>gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica
           RCB]
 gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase
 gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB]
          Length = 146

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G KRIG+A  +     AHP   +  +        +   +        ++GLP +
Sbjct: 4   VLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGLPTH 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+          F   +  R+  +P  F DERLT++ A+  L +   + K     +D+
Sbjct: 64  ADGTPHEMTRLATKFGERLA-RRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPLLDA 122

Query: 139 IAAALILQ 146
           +AA LILQ
Sbjct: 123 VAAQLILQ 130


>gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 124

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 21/136 (15%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID+G KRIG+A++   R+   P+  ++RK   Q A ++ + +        ++G+PL 
Sbjct: 3   IMAIDVGLKRIGVALAV--RQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPLG 60

Query: 79  MNGSEGPRVHSTRAFVHNMI-----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
                GP     R  + + +     D +V    V+ DE +++  A +I      +  +R 
Sbjct: 61  -----GPSEDEMRRRIEHFVSLLEFDGEV----VYQDEAMSSFEASEIY-----AESRRD 106

Query: 134 QKVDSIAAALILQEVL 149
            ++DSIAA +IL+  L
Sbjct: 107 GRLDSIAAMIILKRYL 122


>gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
           TW-7]
 gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
           TW-7]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 39/167 (23%)

Query: 11  KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           ++ KP   + +   D GTK IG+A+                +++T +A  L +    + I
Sbjct: 4   RTFKPQGERTVMGFDFGTKSIGIAVG---------------QELTGSASSLKAVKAQDGI 48

Query: 69  AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113
             +               ++GLPLNM+G+        + F  N +     +P    DERL
Sbjct: 49  PNWDHIAVQVNEWQPDLMVVGLPLNMDGTSQEVTFKAKKFA-NRLHNHYGIPVQTQDERL 107

Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           TT  A+  L +    +      VD+++A +IL+      SF ES  G
Sbjct: 108 TTADAKARLFEQGGYKNLGKGNVDNMSAVIILE------SFFESFYG 148


>gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase
 gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 22  IDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ID G  RIG AISD    F+     F       +   ++  F+    I  FIIG PLN  
Sbjct: 6   IDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSR 65

Query: 81  GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           G +         F+ ++    D+K+ +     +E  ++  A +IL   N+  KK+  K D
Sbjct: 66  GEKTKTCLLIDEFIIHLEKNFDQKIKLI----NESYSSRKASEILHQANIKNKKQKDKKD 121

Query: 138 SIAAALILQEVLD 150
            +AA +ILQ+ LD
Sbjct: 122 MLAAKIILQDYLD 134


>gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
           35110]
 gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
           35110]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           DL+K     + + +ID GTKR GLA +DP + F+          + +   E+      + 
Sbjct: 4   DLIK-----KRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKL---DG 55

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++G P N +GS      +   F+  +      +P    DE  ++ +A ++LI    
Sbjct: 56  IEKILVGYPTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGE 115

Query: 128 SRKKRIQK--VDSIAAALILQEVLDR 151
            RK R +K  +DS AAAL+LQ  L+R
Sbjct: 116 KRKSRQKKGRLDSAAAALLLQNYLER 141


>gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198]
 gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198]
          Length = 131

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D+G KRIG+A    G     P   ++R    Q A +L   +  +N    I+G+P + N
Sbjct: 3   ACDIGLKRIGIAGLIEG--IILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSGN 60

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
             +  R      F  ++++    + +V  +E  T++ A+Q L  +   R++  QK   +D
Sbjct: 61  AEDTKR---RIMFFVSLLETSAKILYV--NEDCTSLEARQDLSHLKKQRRQNAQKNGRID 115

Query: 138 SIAAALILQEVLDR 151
           S+AA  ILQ  L +
Sbjct: 116 SLAACKILQRYLQK 129


>gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
           51756]
          Length = 148

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAH----PRPF--LVRKKVTQTALELL 60
           ED  +S     P   ID G++RIGLAI       AH    PRP   +           L 
Sbjct: 3   EDPAQSA--TGPWLGIDYGSRRIGLAI------LAHLDIAPRPLGTVANGGGGPDWPALE 54

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +      A ++GL    +G+E       R F   +  R   +P ++ DERL++V+A  
Sbjct: 55  KVLAQWAPVACVVGLTARADGTESAVARGARHFAAALSQR-YGLPILWQDERLSSVTAAV 113

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQ 146
            L + +  ++++   +D +AA  IL+
Sbjct: 114 RLREASPRKRRQRLALDPLAACEILR 139


>gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum
           3TCK]
 gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum
           3TCK]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+AI       A+P   L  K       ++   +        ++GL
Sbjct: 4   SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL++ G E   +        N I  +        DERL+TV A+  L +    R      
Sbjct: 64  PLDLEGGELESITPRAKKFANRIHGRFGCVVELHDERLSTVEAKADLFERGGYRSLSKGN 123

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A +IL+   +R
Sbjct: 124 IDSQSAVVILESWFER 139


>gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D G KRIG+A+ +   R A     +           +   + +   A  I+G+P
Sbjct: 2   ETVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGMP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+E       R F  N +  +  +P V  DER T+           V  ++R +++
Sbjct: 62  FHPDGAEHEMSVRCRRFA-NQLHGRYGLPTVLVDERYTSA----------VLGQQRGERI 110

Query: 137 DSIAAALILQEVLD 150
           D  AAALILQ+  D
Sbjct: 111 DDRAAALILQQYFD 124


>gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           K96243]
 gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC
           23344]
 gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           1710b]
 gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei
           SAVP1]
 gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
           10229]
 gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
           10247]
 gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           1106a]
 gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           DM98]
 gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           14]
 gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           91]
 gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           9]
 gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           B7210]
 gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           7894]
 gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           112]
 gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576]
 gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pakistan 9]
 gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1106b]
 gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
           10399]
 gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1655]
 gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           S13]
 gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1710a]
 gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           406e]
 gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase
 gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase
 gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase
 gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase
 gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase
 gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase
 gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase
 gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
           23344]
 gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1710b]
 gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei
           SAVP1]
 gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
           10229]
 gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1106a]
 gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
           10247]
 gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           406e]
 gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
           10399]
 gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           S13]
 gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1655]
 gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576]
 gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pakistan 9]
 gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1106b]
 gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1710a]
          Length = 146

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69
           +L  +  + + D G KRIG+A+ +   R A  R  ++ + + +      +   I      
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGELIAEWKPD 61

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           A ++GLPL+ +G+  P   + RA    N ++ +  +P  + DER ++V A+  L     +
Sbjct: 62  ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R     +VD+ AA +ILQ+ LD
Sbjct: 116 RGDAADRVDAEAARVILQQYLD 137


>gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 134

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D G  R+G+A  D   + A  R   + +K T     L   +    I  F++G+P + +
Sbjct: 2   ALDYGEHRVGVAFGDSELKMAFSRE-TIDQKTTNLFERLDQLVRLNKIDEFVVGMPYHPD 60

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-VDSI 139
           G +  +     AF+ ++  R   +     DE  ++V AQ+    M+  +K++ +  +D  
Sbjct: 61  GRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDRT 120

Query: 140 AAALILQEVLD 150
           AAA+ILQ   D
Sbjct: 121 AAAIILQRWFD 131


>gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205]
          Length = 167

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D+G KRIGLA  DP      P P L R +      +L + +    I A ++GLPL+
Sbjct: 9   VLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILALVVGLPLD 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                  +    R +   +  R + +P  F +E  ++  A +
Sbjct: 69  AQQQPTAQAEHCRRYGERLA-RDLDLPLAFVNEYASSWDAGE 109


>gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 130

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +IDLG KRIG+A + P  +   P   ++RK  TQ A EL   +  +  +  ++G+P  
Sbjct: 2   IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
              SE       R F  +++D    +   F DE  ++  A +          K   + DS
Sbjct: 61  -GASEEEMSRRIRHFA-SLLDFDGEIK--FQDESFSSAEAAEFASKCAKGGGKD-PRFDS 115

Query: 139 IAAALILQEVL 149
           IAA +ILQ  L
Sbjct: 116 IAATIILQRFL 126


>gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311]
 gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G KRIGLA  D       P P L+R+   Q    L     T  +   ++GLPL+  
Sbjct: 10  SLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVVGLPLDAA 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G    +    + +   +    + +P    +E  ++ +A +    +   R  R+   DS A
Sbjct: 70  GQFTEQAAHCQRYGQRLA-MALKLPLALVNEHSSSWAAAE-RYGLQGDRSGRL---DSAA 124

Query: 141 AALILQEVL 149
           A+L+L++ L
Sbjct: 125 ASLLLEQWL 133


>gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
 gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase
 gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D+G KRIGLA  DP      P P L R +     L L     T ++   ++GLPL+
Sbjct: 14  VLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLVVGLPLD 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             G    +    R +   +  + + +P  + +E  +T +A +
Sbjct: 74  AAGQPTAQAEHCRRYGVRLA-QSLGLPLAWVNEHSSTWAAGE 114


>gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei
           MSHR346]
 gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 11/142 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69
           +L  +  + + D G KRIG+A+ +   R A  R  ++ + + +      + + I      
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGALIAEWKPD 61

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           A ++GLPL+ +G+  P   + RA    N ++ +  +P  + DER ++V A+  L     +
Sbjct: 62  ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R     ++D+ AA +ILQ+ LD
Sbjct: 116 RGDAADRIDAEAARVILQQYLD 137


>gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli
           95/1000]
 gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli
           95/1000]
          Length = 137

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G K+ G A  D   +   P   +      +    L+  I  + I   + GLPL+
Sbjct: 3   ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E       R F   ++ + V V  VF DE  T+  A  IL      +  + +  D 
Sbjct: 63  DEGKESEWCAEIRRFSEFLL-KSVKVNIVFVDEYGTSKEADFIL--RGKKKSVKKKANDL 119

Query: 139 IAAALILQEVLD 150
           IAA LIL+  L+
Sbjct: 120 IAAVLILENYLN 131


>gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase
 gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 144

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+AI       A P   L  +        +     T     F++GLPL 
Sbjct: 10  VMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLK 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM---NVSRKKRIQ 134
           ++GSE P     + F   +  ++++ VP    DER +T  A+         ++  +  I 
Sbjct: 70  IDGSEQPITILAKIFAIQL--KELFPVPVKMHDERFSTSEARLNYFKYYHDDLCARSNI- 126

Query: 135 KVDSIAAALILQEVLDR 151
           K+++IAA +IL+  L++
Sbjct: 127 KINAIAAGVILKSWLNK 143


>gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH]
          Length = 140

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN--IAAFII 73
           Q I  ID G KRIG A+++   RF  P R F V+  + Q    L   +      +   +I
Sbjct: 2   QYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVI 61

Query: 74  GLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           G P  +   S    +H    FV  +I  +  VP    DE  TT   +  L ++ +  +  
Sbjct: 62  GFPHFHYQSSIQVSIHK---FVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117

Query: 133 IQKVDSIAAALILQEVLDR 151
            +  D++AA LIL+  L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136


>gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola
           AmH]
 gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 130

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 19/137 (13%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  ID+G KRIG+A S+       P P ++RK   Q A + +  I        ++GLP
Sbjct: 2   EKIIGIDVGLKRIGVAFSNGS--VVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGLP 59

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSAQQILIDMNVSRKKR 132
           L  N     R+   R FV         +PF    VF DE  T+   ++ +    V + K+
Sbjct: 60  L-TNEEMQRRI---RHFVS-------LLPFEGKIVFVDESYTSAEVEEEI--KGVIKHKK 106

Query: 133 IQKVDSIAAALILQEVL 149
             ++DS+ A  +++  L
Sbjct: 107 DGRIDSLVAKKLIENYL 123


>gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           668]
 gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase
 gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668]
          Length = 146

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69
           +L  +  + + D G KRIG+A+ +   R A  R  ++ + + +      +   I      
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGELIAEWKPD 61

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           A ++GLPL+ +G+  P   + RA    N ++ +  +P  + DER ++V A+  L     +
Sbjct: 62  ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVNWVDERYSSVEARAGL----RA 115

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R     +VD+ AA +ILQ+ LD
Sbjct: 116 RGDAADRVDAEAARVILQQYLD 137


>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R G+AIS    +    +P  V K   Q     LL     E +  FIIGLP + 
Sbjct: 69  GVDLGLSRTGVAIS----KGYTVKPLTVLKSRGQKLETRLLEIAEEEEVDEFIIGLPRSS 124

Query: 80  NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +G E  + +  R+    +      + +  +VF DE  TT  A   +I M +S+ +R  + 
Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVF-DEHGTTSEASDRMIVMGLSKSERQNRS 183

Query: 137 DSIAAALILQ 146
           D+ AA ++L+
Sbjct: 184 DAYAAVILLE 193


>gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 48/111 (43%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G+ RIG+A SDP    A P   + R +  +    L +          ++GLP  + 
Sbjct: 26  GVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVVGLPRTLA 85

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
              GP           + DR    P    DERLTTVSAQ+ L    V  K+
Sbjct: 86  DRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAKE 136


>gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
          Length = 163

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D G +RIG+A+         P   +  +        L  ++        ++G PLN++
Sbjct: 22  GLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNLD 81

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS--RKKRIQK--V 136
           G+  P     + F   + +R   +P    DER ++  A++ L +   S  R +++QK  +
Sbjct: 82  GTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGDI 140

Query: 137 DSIAAALILQ 146
           D+++AA++L 
Sbjct: 141 DALSAAILLD 150


>gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella
           excrementihominis YIT 11859]
 gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella
           excrementihominis YIT 11859]
          Length = 150

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G KRIG+A+ +   + A P   +  KK  Q   E+   ++    AA ++G+P +
Sbjct: 16  VIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPAAVVVGVPRH 75

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
            +G           F  N ++ +  +P V  DER ++V A+
Sbjct: 76  KDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAE 115


>gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila
           L48]
 gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 141

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G+K+IG+A+       A     L  +       ++   I      A ++GLPLNM+
Sbjct: 9   GFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDSI 139
           G+          F   +  R   +P    DERLTT  A+ + +         R   VD+I
Sbjct: 69  GTPSDMSERAEKFARRLNGR-YNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVDAI 127

Query: 140 AAALILQEVLD 150
           AAAL+LQ  L+
Sbjct: 128 AAALLLQGWLE 138


>gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium
           1_1_47]
 gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium
           1_1_47]
          Length = 144

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G KRIG+A+ +   + A P   +  KK  Q   E+   ++    AA ++G+P +
Sbjct: 10  VIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPAAVVVGVPRH 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
            +G           F  N ++ +  +P V  DER ++V A+
Sbjct: 70  KDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAE 109


>gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303]
 gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. MIT 9303]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 9   LVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           L+ + KP  + I S+DLG +RIGLA  DP      P P L RK   +    L    T+  
Sbjct: 53  LMTATKPRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRK 112

Query: 68  IAAFIIGLPLNMNG 81
           +   ++GLPL+  G
Sbjct: 113 VEGLVVGLPLDSKG 126


>gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster
           bacterium]
          Length = 140

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75
           Q     D+GTKR G+AI++     A     +   K   +  E     I+  ++  FI+GL
Sbjct: 3   QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P N +GSE       ++F   + +++  +     DE L++  A+  L   +         
Sbjct: 63  PFNKDGSEQEMTFIAKSFARKL-EKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121

Query: 136 VDSIAAALILQEVLDR 151
           VD  +A LILQ  L+ 
Sbjct: 122 VDKRSAQLILQTWLNE 137


>gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
           Langford 1]
          Length = 143

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%)

Query: 19  IASIDLGTKRIGLAISDPGR---------RFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + S+D+GTK++G+A+S   +         RF + +  +  +K+     EL +F   E I 
Sbjct: 3   VLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKT---ELRNF--WEEIG 57

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             +IG       SEG  V S    V  M+         F  E +++  +   L  +N S 
Sbjct: 58  VAVIG-----KASEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSS 112

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
            K  +K+DS +A +IL++  D I+
Sbjct: 113 NKAREKLDSYSALIILKDYFDSIN 136


>gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine
           bacterium EB0_35D03]
          Length = 142

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             D+GTKR G+AI++     A      L  K  +    +L   I       FI+G+PL+ 
Sbjct: 8   GFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGMPLDK 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +  E       R+F   + +++     +F DE L++  A++ L      +      VD  
Sbjct: 68  DNKEQEMTFIARSFGRKL-EKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGDVDKR 126

Query: 140 AAALILQEVLDRISF 154
           +A LILQ  L+  ++
Sbjct: 127 SAKLILQTWLNETTY 141


>gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 172

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
           I  +D+G  R+G+AISDP +  A P    +  K      EL     T NI   +IG PL 
Sbjct: 3   ILCLDIGNSRVGVAISDPLKITAQP-LMTIELKNKDLFDELDKIFHTYNIEKVVIGYPLS 61

Query: 78  ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKR 132
               ++   +  ++      + + I  +  V  V WDER +T + ++++  ++N  +++R
Sbjct: 62  KLHPDLKDEKLKKIDE----ISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRR 117


>gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822]
 gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50]
 gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase
 gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase
 gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 133

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        +   +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
           LPL ++G E P     R F + +  R  + V  V  DER +++ AQQ+L
Sbjct: 62  LPLTLDGQEQPASARARRFANQLHGRFGLAVELV--DERGSSMEAQQLL 108


>gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis]
          Length = 227

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPF-----LVRKKVTQTALELLSFITTENIAAFIIGL 75
            +D G + +GLA+S  G     PRP       +  +  Q A  +L+    E   A ++GL
Sbjct: 32  GLDYGRRVVGLAVSTLG---LAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVLGL 88

Query: 76  PLNMNGS------EGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           P+ + GS      +  +    R F  NM  +     +P    DER +T++A+++L     
Sbjct: 89  PVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASSGS 148

Query: 128 SRKKRIQKVDSIAAALILQ 146
            R    +++DS+AAA+IL+
Sbjct: 149 RRSTLSKRMDSVAAAVILE 167


>gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
 gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
          Length = 148

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 37/155 (23%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
             D GTK IG+A+                +++T TA  L++F   + I  +         
Sbjct: 13  GFDFGTKSIGIAVG---------------QEITGTARPLVAFKANDGIPDWDLIEKQIKE 57

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+G PLNM+G+E         F + +  R   V     DERLTT  A+  L + 
Sbjct: 58  WQPDLVIVGKPLNMDGTEQEITKRATKFANRLTGR-FNVKTEMHDERLTTKDAKARLFEE 116

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
              +  +   +DS +A +IL+      S++E+  G
Sbjct: 117 GGFKALQKGAIDSASAMVILE------SWMEAQYG 145


>gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I]
 gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase
 gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS]
          Length = 133

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        +   +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           LPL ++G E P     R F  N +     +     DER +++ AQQ+L
Sbjct: 62  LPLTLDGQEQPASARARRFA-NQLHGHFGLAVELVDERSSSMEAQQLL 108


>gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha
           JMP134]
 gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase
 gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134]
          Length = 141

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + L  +  + + D G K+IG+A+ +   R A     L    V      +   I       
Sbjct: 7   RELPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQ 66

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G+P+N  G E P +   R F  N ++ +  +P  + DER ++  A      M  +R+
Sbjct: 67  LVVGMPVNPEGGEQPSMRLARRF-GNQLNGRYSLPVEWVDERYSSRMAA-----MGGARR 120

Query: 131 KRIQKVDSIAAALILQEVLDRI 152
               ++D+ AA +ILQ+  D++
Sbjct: 121 G---ELDAEAARIILQQYFDQL 139


>gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129]
 gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase
 gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129]
          Length = 140

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN--IAAFII 73
           Q I  ID G KRIG A+ +   RF  P R F V+  + Q    L   +      +   +I
Sbjct: 2   QYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVI 61

Query: 74  GLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           G P  +   S    +H    FV  +I  +  VP    DE  TT   +  L ++ +  +  
Sbjct: 62  GFPHFHYQSSIQVSIHK---FVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117

Query: 133 IQKVDSIAAALILQEVLDR 151
            +  D++AA LIL+  L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136


>gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08]
          Length = 134

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 45/82 (54%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+GLP+ +NG+E       R     + +    +P  + DER+TT +A + L D   + +
Sbjct: 39  VIMGLPVALNGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNAR 98

Query: 131 KRIQKVDSIAAALILQEVLDRI 152
           ++   +D  AA  IL++VL+++
Sbjct: 99  QQRGVIDQAAAVAILEDVLEQV 120


>gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase
 gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 129

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A +  I    + +K+  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKKALEYGI---ANTRKKDGKLDSL 115

Query: 140 AAALILQE 147
           AA +++++
Sbjct: 116 AAFIMIKD 123


>gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase
 gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM
           1251]
          Length = 130

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +IDLG KRIGLA S   +    P   + RK   Q A ++   +    + A ++G+PL   
Sbjct: 5   AIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIPL--G 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
           GS    +    A   N++    +   +F+ DE  +++ A+ ++  ++   R  RI   DS
Sbjct: 62  GSSEDEMRRRVAHFMNLV---AFEGEIFYQDESNSSIEAESMMRGEIKYIRDGRI---DS 115

Query: 139 IAAALILQEVL 149
           I+A +ILQ  L
Sbjct: 116 ISAMIILQRYL 126


>gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
           CCMP1335]
          Length = 423

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFV-FWDERL 113
           ++++  +E +   ++GLPL+ NGS   +   TR F + ++     R  Y   V  WDER 
Sbjct: 238 IINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMGYNANVTLWDERY 297

Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
           T+  A   ++   ++R +RI     +  AL
Sbjct: 298 TSKEAASRIVGEAIARNRRIPSASDLNGAL 327


>gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
 gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GT+RIG+A          P   L  +       ++   +        ++GLPLNM+
Sbjct: 2   AFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNMD 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            +E       R F   +  R  +V     DERLT+  A+  ++    SR      VD  A
Sbjct: 62  DTENDMCARARKFGKRLHGR-FHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDRA 120

Query: 141 AALILQ 146
           A LIL+
Sbjct: 121 AVLILE 126


>gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
           ES-2]
 gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
           ES-2]
          Length = 170

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D GT+RIG+A+ +     A P   +  +K       +   +      A ++GLP + +
Sbjct: 21  AFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLPCSDD 80

Query: 81  GSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           GS     H   A       R   +  +  +  DER ++++A + L    V  + +   +D
Sbjct: 81  GSP----HELTALCQRFAKRLHGRYGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALID 136

Query: 138 SIAAALILQEVLDR 151
             AA  ILQ   D 
Sbjct: 137 QYAAQQILQAYFDE 150


>gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination
          (possible Holliday junction resolvase in Mycoplasmas
          and B. subtilis) [Streptococcus pyogenes M49 591]
          Length = 83

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGLP N
Sbjct: 2  GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPKN 61

Query: 79 MNGSEGPRVHSTRAF 93
          MN + GPRV ++  +
Sbjct: 62 MNNTNGPRVDASITY 76


>gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans]
 gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D G KRIG+A+ +   + A P   +           +   +T    A  I+GLP
Sbjct: 2   ETVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+E       R F  N +  +  V  V  DER ++           V   +R   +
Sbjct: 62  RHPDGAEHEMTVRCRRFA-NQLHGRFDVATVLVDERYSSA----------VISHQRGDLI 110

Query: 137 DSIAAALILQEVLD 150
           D  AAA+ILQ+  D
Sbjct: 111 DDQAAAIILQQYFD 124


>gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str.
           Illinois]
 gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G + IG+A+SDP  R+               A  ++  ++  + +  I+G P +
Sbjct: 18  IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIMKVVS--DFSGIIVGTPFS 75

Query: 79  MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              + G  +HS   F   +  I +K   P +  DE  +T     +L  ++ SR+K+ +  
Sbjct: 76  HIRNNG-WLHSIDKFAQKLSEITKK---PILMCDESSSTSDVMVLLGSLSRSRQKKWK-- 129

Query: 137 DSIAAALILQEVLDRI 152
           D IAA  IL++ L  I
Sbjct: 130 DKIAACCILEKTLCTI 145


>gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
 gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
          Length = 140

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 15/142 (10%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID G   +GL+ISDP  +   P   + R    +   ++   I  +++ A ++G PL  +
Sbjct: 5   GIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDPLRTD 64

Query: 81  GSEGPRVHSTRAFVHNMIDRK---VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            S      S+++ +   + +K   + V  + +DER +++ A ++     +   K   K+ 
Sbjct: 65  FSSA----SSKSILK--VKKKLETIGVKVILFDERYSSIEALKL---QKILGNKDKGKIH 115

Query: 138 SIAAALILQEVLDRISFLESSK 159
            IA++++L+  LD   FL ++K
Sbjct: 116 EIASSIVLKSFLD---FLSNTK 134


>gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile
           DSM 44702]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-----QTALELLSFITTENIAAFIIGL 75
            +D+GT RIG+++SDP    A P   +   K +     +    +L  I    +   ++GL
Sbjct: 29  GLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFVVEVVVGL 88

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+++             +    + + + +P    DER++T++A   +    V++KK   +
Sbjct: 89  PVSLRSHRTRSTRRAENYA-TRLRKNLDIPVRLVDERMSTMAATNAMHASGVNQKKGRSR 147

Query: 136 VDSIAAALILQEVLD 150
           +D  AA  ILQ  LD
Sbjct: 148 IDQAAAVHILQGWLD 162


>gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC1989]
 gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC1989]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLPLNM+ SE       R F   +  R   V   F DERL+T  A+Q           
Sbjct: 58  VVGLPLNMDDSESELCARARKFGRRLHGR-FSVDVEFMDERLSTFDAKQEAKARGHKGNY 116

Query: 132 RIQKVDSIAAALILQ 146
           +   +DSIAA LIL+
Sbjct: 117 KQNPIDSIAARLILE 131


>gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT
          9313]
 gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase
 gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
          9313]
          Length = 161

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
          S+DLG +RIGLA  DP      P P L RK   +    L    T+  +   ++GLPL+  
Sbjct: 13 SLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVVGLPLDAK 72

Query: 81 G 81
          G
Sbjct: 73 G 73


>gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
 gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
 gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
          Length = 189

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
            +D+G  R+G+A +DP    A P   L R    +  + EL++     ++ A  +GLP+N+
Sbjct: 38  GVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNL 97

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQIL 122
            G   P       +   +          VP    DERL+TVSAQ  L
Sbjct: 98  RGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGL 144


>gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
 gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ +   D GTK IG+AI       A P   L  K       ++   +        +
Sbjct: 1   MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60

Query: 73  IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           +GLPL++ G E     PR       +H     +V +     DERL+TV A+  L +    
Sbjct: 61  VGLPLDLKGKELESITPRAKKFANRLHGRFGCQVELH----DERLSTVEAKAELFERGGY 116

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
           R      +DS +A +IL+   +R
Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139


>gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase
 gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 153

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 11/134 (8%)

Query: 19  IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
           + S D G KRIGLA  DP G       P  + +   Q  L L+  +  E  I   I+GLP
Sbjct: 9   VLSFDYGHKRIGLAGCDPLGITVTALSP--IHRISFQKDLTLIKSLCIEREIKGLIVGLP 66

Query: 77  LNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           L+ +G     V S     + + I +++ +P  + +E  ++  A Q     N+ +  R  K
Sbjct: 67  LDESGQN--TVQSIHCQNYGIKIAKELDLPLAWVNEHSSSWDAGQ---KYNL-QNDRTGK 120

Query: 136 VDSIAAALILQEVL 149
           +DS  AAL+L++ L
Sbjct: 121 LDSAVAALLLEQWL 134


>gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A +  I      +K+  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALEYGI---ADTRKKDGKLDSL 115

Query: 140 AAALILQE 147
           AA +++++
Sbjct: 116 AAFIMIKD 123


>gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 129

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 66  ENIAAF--IIGLPLNMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQ 120
           E   AF  I+GLP +M G         RA+  ++   + R+V V  V  DERLTTV+A +
Sbjct: 21  EEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPRQVCVRLV--DERLTTVTAHR 78

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
            L    +  +     VD  AA +IL++ +
Sbjct: 79  DLHAAGMKERSFRGIVDQAAAVVILEQAI 107


>gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
 gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
          Length = 143

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ +   D GTK IG+AI       A P   L  K       ++   +        +
Sbjct: 1   MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60

Query: 73  IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           +GLPL++ G E     PR       +H     +V +     DERL+TV A+  L +    
Sbjct: 61  VGLPLDLEGKELESITPRAKKFANRLHGRFGYQVELH----DERLSTVEAKAELFERGGY 116

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
           R      +DS +A +IL+   +R
Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139


>gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
 gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 11/141 (7%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D G KRIG+A+ +   + A P   +           +   +     A  I+GLP
Sbjct: 2   ETVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G E       R F  N +  +  V  V  DER ++           V   +R + +
Sbjct: 62  RHPDGEEHEMTVRCRRFA-NQLHGRFNVATVLVDERYSSA----------VISHQRGELI 110

Query: 137 DSIAAALILQEVLDRISFLES 157
           D  AAA+ILQ+  D  +  ES
Sbjct: 111 DDQAAAIILQQYFDDYTQSES 131


>gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri GWSS]
 gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase
 gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein
           [Candidatus Sulcia muelleri GWSS]
          Length = 138

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G KRIGL+I++  R  A     +    +  T  + L +   E+I   +IGLP+ 
Sbjct: 4   ILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNIICTLYKYLKY---EDIDTIVIGLPIR 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKV 136
            + S  P     + F+  + ++   +     DER T+  A   LI+  + +++ K+ Q  
Sbjct: 61  FDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKNQNF 120

Query: 137 ---DSIAAALILQEVL 149
              D I+A ++LQE +
Sbjct: 121 LDKDKISATILLQEYI 136


>gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis MSMB43]
          Length = 146

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
           +L  +  + + D G KRIG+AI +   R A      P L R+   +   EL++    +  
Sbjct: 4   ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F  N ++ +  +P  + DER ++V A+        +
Sbjct: 62  -ALVVGLPLHPDGAPHEMTQRAKRF-GNQLNGRFNLPVSWVDERYSSVEARA----GLRA 115

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R     +VD+ AA +ILQ+ LD
Sbjct: 116 RGAAADRVDAEAARVILQQYLD 137


>gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN]
 gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G KRIGL+I++  R  A     +    +  T  + L +   E+I   +IGLP+ 
Sbjct: 4   ILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNIICTLYKYLKY---EDIDTIVIGLPIR 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133
            + S  P     + F+  + ++   +     DER T+  A   LI+       + + K  
Sbjct: 61  FDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKNKNF 120

Query: 134 QKVDSIAAALILQEVL 149
              D I+A ++LQE +
Sbjct: 121 LDKDKISATILLQEYI 136


>gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
 gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
          Length = 149

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 7/136 (5%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
            ID+G  R+G+A+SDP    A P   + R       +      E+ + +   ++   I+G
Sbjct: 11  GIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHDVVQVIVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  + G+EGP   + RAF  +++   + VP    DERLTTV A + L +  V  K++  
Sbjct: 71  LPRTLAGAEGPAAAAARAFADDLV-AVLDVPVELSDERLTTVVATRQLRERGVKGKRQRA 129

Query: 135 KVDSIAAALILQEVLD 150
            VD  AA  ILQ  LD
Sbjct: 130 VVDQAAAVAILQGWLD 145


>gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           bilis ATCC 43879]
 gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           bilis ATCC 43879]
          Length = 160

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 29/160 (18%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74
           I  ID G KR+G+A     +    P   ++RK   Q + +L + +            ++G
Sbjct: 3   IFGIDFGLKRLGVA--KVVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60

Query: 75  LPL-----------NMNGSEGPRVHSTRAFVHNMIDRKV-----YVPF----VFWDERLT 114
           +P            N+N   G  + S RA  H ++ +++      + F    ++ DE  +
Sbjct: 61  MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120

Query: 115 TVSAQQILIDMNVSRKKRIQK---VDSIAAALILQEVLDR 151
           +  A + L+D   +++K  +K   +DSI+A +IL+  L+R
Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160


>gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 141

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ + + D GTK IG+AI       A P   L  +    +   +   +        +
Sbjct: 1   MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60

Query: 73  IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           +GLPL+M+G E     PR       +H     +V +     DERL+T  A+  L +    
Sbjct: 61  VGLPLDMSGHELETITPRAKKFANRLHGRFGCQVELH----DERLSTAEARAELFEFGGY 116

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R      +DS +A +IL+   +
Sbjct: 117 RNLSKGNIDSQSAVVILESWFE 138


>gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP
           101886]
 gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP
           101886]
          Length = 143

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+AI       A P   L  K    +   + + +        ++GLP
Sbjct: 5   QTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVVVGLP 64

Query: 77  LNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           L+++G E     PR    R F  N +  +  V     DERLTT  A+  L +    +   
Sbjct: 65  LDLHGGELETITPRA---RKFA-NRLKGRFGVNVELHDERLTTTEARASLFEYGGYKALG 120

Query: 133 IQKVDSIAAALILQEVLD 150
             ++DS +A +I++   +
Sbjct: 121 KGEIDSQSAVIIVESWFE 138


>gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase
 gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K IG+A+ +   +       L  K  +     + + +        ++GLPLN
Sbjct: 3   VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G+          F   ++  K  +     DERL+T  A+ ++   N  +  + +K+ S
Sbjct: 63  IDGTRQDITKKAEKFAF-LLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121

Query: 139 IAAALILQEVLDR 151
           +AA +IL+   ++
Sbjct: 122 VAAVIILESWFNQ 134


>gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 124

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID+G KRIG+A++    +   P+  ++RK   Q A ++ + +        ++G+PL 
Sbjct: 3   IMAIDVGLKRIGVALAVG--QTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPLG 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +  +  R    R   H +   +     V+ DE +++  A +I      +  +R  ++DS
Sbjct: 61  GSSEDEMR----RRIAHFVSLLEFDGEVVYQDEAMSSFEASEIY-----AEGRRDGRLDS 111

Query: 139 IAAALILQEVL 149
           IAA ++L+  L
Sbjct: 112 IAAMIVLKRYL 122


>gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter
           mediatlanticus TB-2]
          Length = 130

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 12/134 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I +ID+G KRIG+A + P      P   ++RK   Q A E+ + +        ++G+P
Sbjct: 2   ERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGIP 60

Query: 77  LNMNGSEGPRV-HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
              N     R+ H T     N+ID    + FV  DE  T+   ++ +      + KR  +
Sbjct: 61  -KTNEEMTKRIKHFT-----NLIDFNGKIEFV--DESFTSAIVEEEI--KGKIKHKRDGR 110

Query: 136 VDSIAAALILQEVL 149
           +DS+AA  IL+  L
Sbjct: 111 IDSLAAKKILESFL 124


>gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 148

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K IG+A+ +   +       L  K  +     + + +        ++GLPLN
Sbjct: 14  VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G+          F   ++  K  +     DERL+T  A+ ++   N  +  + +K+ S
Sbjct: 74  IDGTRQDITKKAEKFAF-LLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 132

Query: 139 IAAALILQEVLDR 151
           +AA +IL+   ++
Sbjct: 133 VAAVIILESWFNQ 145


>gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 79

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           ++GLP+ + G EG +   TR FV  + +    +  VF DER T+  A++
Sbjct: 24  VVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFEDERFTSQMAEK 72


>gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase
 gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase
 gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 12  SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67
           +++P+  +   D+G++RIG+A+      G R       ++           L  +  E  
Sbjct: 6   AIRPDATVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHANGPDWVALDRVHKEWR 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
            A  ++G PL ++  + P      AF   + +R   +P V  DER ++V A Q       
Sbjct: 62  PAGLVVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERA 120

Query: 128 SRKKR---IQKVDSIAAALILQEVL 149
             +KR      +D++AAA+I++  L
Sbjct: 121 DGRKRRRDADTLDAMAAAVIVERWL 145


>gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 142

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ +   D GTK IG+AI       A P   +           +   +        +
Sbjct: 1   MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60

Query: 73  IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           +GLPL++ G E     PR       VH     +V +     DERL+TV A+  L +    
Sbjct: 61  VGLPLDLEGKELETITPRAKKFANRVHGRFGCQVELH----DERLSTVEARAELFERGGY 116

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
           R      +DS +A +IL+   +R
Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139


>gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454]
 gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
          Length = 146

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+AI +   R A     +  +        +   I        ++GLP++ +
Sbjct: 10  AFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPVHPD 69

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G+        R F  N ++ +  +P  + DER ++V+A+       V        VD+ A
Sbjct: 70  GAPHEMTRQARRF-GNQLNGRFNLPVTWVDERYSSVAAEAAGARGAV--------VDAQA 120

Query: 141 AALILQEVLDRISF 154
           A +ILQ+  D  S+
Sbjct: 121 ACIILQQYFDEQSY 134


>gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37]
 gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase
 gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37]
 gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTEN----IAA 70
           + I +ID G K+IG AI++   ++  P  F V   K   +TA+  L F+  +N    +  
Sbjct: 2   KYILAIDFGLKKIGTAIANTLDKY--PSAFHVFEVKNNFKTAVNNL-FLRIKNDGYELEK 58

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            +IG P     S+  +  + ++F   +++++  +P +  DE  TT + +  LI M++  K
Sbjct: 59  IVIGFPKFHYYSDIQK--AIKSF-KQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHK 115

Query: 131 KRIQKVDSIAAALILQ 146
              +  D++AA LIL+
Sbjct: 116 DFKKAKDTLAAVLILE 131


>gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c]
 gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  +   D+GT+RIG+A+       A     +    V      L            ++G
Sbjct: 9   PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKK 131
            PL + G + P     +AF   + +R   +P V  DER ++V A         +   R++
Sbjct: 69  DPLTLEGHDQPIRKQAQAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127

Query: 132 RIQKVDSIAAALILQEVL 149
               +D+IAAA+IL+  L
Sbjct: 128 DADTLDAIAAAVILERWL 145


>gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR5-3]
 gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR5-3]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G  +IG+A+ +       P   L  +       E+            ++G PLN
Sbjct: 10  VLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPLN 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+G+        R F   +  R  + V  V  DERL++   +Q   +       R   VD
Sbjct: 70  MDGTVSEFAQRARKFARRLEGRLGLSVEMV--DERLSSFEVKQQQKEAGHRGDYREHPVD 127

Query: 138 SIAAALILQEVL 149
            +AA LIL++ L
Sbjct: 128 DLAAELILRDWL 139


>gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A    +    + +K+  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115

Query: 140 AAALILQE 147
           AA +++++
Sbjct: 116 AAFIMIKD 123


>gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
           51599]
 gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
           51599]
          Length = 156

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + + D G KRIG+A+ +     A P   L  +        + + +        ++G P
Sbjct: 11  QTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQPTGLVVGRP 70

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMN------- 126
           L+ +G+     H   A       R   +  +P    DER ++V+AQ+ + D +       
Sbjct: 71  LHPDGTP----HEVTALAERFARRLEGRFGLPVFLVDERYSSVAAQERMRDEDDEHVTRG 126

Query: 127 --VSRKKRIQKVDSIAAALILQEVL 149
               +    Q  D+ AAA+IL++ L
Sbjct: 127 GRRRKGGASQGDDATAAAIILEQYL 151


>gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54]
          Length = 133

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        + + +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           L L+ +G E P     R F  N +  +  V     DER +++ AQ++L
Sbjct: 62  LALDADGGEQPATARCRRFA-NQLHGRFGVAVELVDERGSSMEAQRLL 108


>gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
 gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 29/142 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R GLAI   G + A  +   V KK   + +  + FI       F++GLPL+
Sbjct: 2   IVAVDYGDARCGLAI---GEKLAR-KIMTVEKKKVISEISRIPFIN-----CFVVGLPLS 52

Query: 79  MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           M+G    +      F   +     ++VY+     DERLT+            S  K  + 
Sbjct: 53  MSGRYSQQTFKAIEFAEKLNRRFKKRVYL----IDERLTS------------SIFKNREN 96

Query: 136 VDSIAAALILQE-VLDRISFLE 156
           +D + AA I ++ V  ++ F E
Sbjct: 97  IDGLCAAEIFEKFVFSKMKFHE 118


>gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A +  +    + +++  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFIDESGTSKEALKYGV---ANAREKDGKLDSL 115

Query: 140 AAALILQE 147
           AA +++++
Sbjct: 116 AAFIMIKD 123


>gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 124

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID+G KRIG+A++          P L RK   Q A + L  +  +N    ++GLP  
Sbjct: 2   IVAIDVGLKRIGVAVAVLPTVVLPSEPIL-RKNRNQAAKDTLKMLKEKNATKLVVGLPKG 60

Query: 79  MNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
               E       + F+  +  D ++    ++ DE  ++  A ++      S+  +  + D
Sbjct: 61  -GSCEDEMERRIKHFISLVGFDSEI----IYVDEAYSSCEASEL------SKDSKDGRFD 109

Query: 138 SIAAALILQEVLD 150
           SIAA +IL+  L+
Sbjct: 110 SIAAMVILKRYLN 122


>gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
           21326]
 gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
           21326]
          Length = 140

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 36/157 (22%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I S D GTK IG AI                +++T TA  L +F   + I  +       
Sbjct: 5   IMSFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKLI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLP +++G +   +        N +  +  +P    DERL+T  A+  L 
Sbjct: 50  KEWQPDLLVVGLPTDLHGRDLETITPRAKKFANRLHGRFGLPVELHDERLSTTEARAELF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +M   +      VD  +A +IL+      S+ E+  G
Sbjct: 110 NMGGYKALSKGNVDCQSAVVILE------SWFETQYG 140


>gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
 gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12]
 gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase
 gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
 gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12]
          Length = 155

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  +   D+GT+RIG+A+       A     +    V      L            ++G
Sbjct: 9   PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKK 131
            PL + G + P      AF   + +R   +P V  DER ++V A         +   R++
Sbjct: 69  DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127

Query: 132 RIQKVDSIAAALILQEVL 149
               +D+IAAA+IL+  L
Sbjct: 128 DADTLDAIAAAVILERWL 145


>gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
          Vollum]
          Length = 75

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
          I  +D+GTK +G+AISD  G          + ++  Q   + +S  +   ++   ++GLP
Sbjct: 3  ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62

Query: 77 LNMNGSEGPRVHS 89
           NMNG+ GPR  +
Sbjct: 63 KNMNGTIGPRGEA 75


>gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
           16]
 gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
           16]
          Length = 136

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 36/155 (23%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           S D GTK IG AI                ++VT TA  L +F   + I  +         
Sbjct: 2   SFDFGTKSIGSAIG---------------QEVTGTASPLRAFKANDGIPNWDDIEKLIKE 46

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLP +++G +   +        N +  +  +P    DERL+T  A+  L +M
Sbjct: 47  WQPDLLVVGLPTDLHGRDLETITPRAKKFANRLHGRYGLPVELHDERLSTTEARADLFNM 106

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
              +      VD  +A +IL+      S+ E+  G
Sbjct: 107 GGYKALSKGNVDCQSAVVILE------SWFEAQWG 135


>gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae]
          Length = 74

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P  +  R F  N +  +  +     DERLTT+ A+  L +    R     K+DS
Sbjct: 1   MDGTEQPISNQARKFA-NRLHGRFGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59

Query: 139 IAAALILQEVLDR 151
           I+A +IL+   ++
Sbjct: 60  ISAVIILESWFEQ 72


>gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 21  SIDLGTKRIGLAISDPGRRFAH---PRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           +ID+G KRIGLA       F     P   ++RK   Q A ++   +        ++G+P+
Sbjct: 7   AIDVGLKRIGLAFG-----FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGVPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
               SE         FV +++D +  +  V+ DE  ++  A +I  D      +R  ++D
Sbjct: 62  G-GSSEDEMRRRIEHFV-SLLDMQANI--VYQDEAFSSSEASEIYTDT-----RRDGRLD 112

Query: 138 SIAAALILQEVL 149
           S++AA+IL+  L
Sbjct: 113 SVSAAIILKRYL 124


>gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1]
 gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase
 gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 136

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+   RIG A+S    R A  R  + RK++      +   +        ++GLPL 
Sbjct: 18  VLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPLR 75

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
            +G   P     RAF   ++D+   V   + DER TT  A+ +
Sbjct: 76  TDGKPSPTADRVRAFGRVLMDKGYTVE--YQDERFTTQRARAL 116


>gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396]
 gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase
 gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Hahella chejuensis KCTC 2396]
          Length = 158

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G KR G A+       A P   +  +        + + +     A  I+G PLN
Sbjct: 4   VVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGEPLN 63

Query: 79  MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           M+GS        R F   +H   + +V +     DERLT+  A+ ++ +    R      
Sbjct: 64  MDGSVSEMALRARKFARRLHGRYNLRVEMA----DERLTSSEAKSMVRERYGQRDFGRFA 119

Query: 136 VDSIAAALILQEVLD 150
           VDSIAA  I++  L+
Sbjct: 120 VDSIAAVFIVESWLE 134


>gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase
 gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     S + F   V     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 63  LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase
 gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase
 gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase
 gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
           holarctica 257]
 gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     S + F   V     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 63  LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
           RM2228]
 gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli
           JV20]
 gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
           RM2228]
 gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli
           JV20]
          Length = 126

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 11/128 (8%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+     + A P   ++RK   Q A E+ + +   +I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALCID--KIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIP-KGG 61

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A    +    + +K+  K+DS+
Sbjct: 62  SSEEEMTRRIKHFVSLLEFDKEIR----FVDESGTSKEALGYGV---ANTRKKDAKLDSL 114

Query: 140 AAALILQE 147
           AA +++++
Sbjct: 115 AALIMIKD 122


>gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73]
 gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas
           albilineans]
          Length = 165

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAH-PRPFLVRKKVTQT----ALELLSF 62
           D   +L+ +  +   D+G +RIG+A+   G RF    R   V     Q     AL+ L  
Sbjct: 12  DGAATLRHDGTVLGFDVGHRRIGVAV---GSRFGSGARALAVIDVHAQGPDWPALDRLHA 68

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQI 121
               +    ++G PL ++G++ P      AF   +  R   +P V  DER ++V +AQ+ 
Sbjct: 69  QWRPH--GLVVGDPLTLDGADQPNRKRAHAFARELGARYC-LPVVLVDERSSSVEAAQRF 125

Query: 122 LIDMNVSRK 130
            +D    RK
Sbjct: 126 AVDRAAGRK 134


>gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 127

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A    +    + +K+  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115

Query: 140 AAALILQE 147
           +A +++++
Sbjct: 116 SAFIMIKD 123


>gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase
 gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase
 gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 136

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG++      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     S + F   V     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 63  LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
           SUMu002]
 gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
           SUMu004]
 gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
           SUMu011]
 gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
           SUMu002]
 gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
           SUMu004]
 gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
           SUMu011]
          Length = 122

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 34/80 (42%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+GLP  +    G            +  R    P    DERLTTVSAQ+ L    V   
Sbjct: 28  VIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRAS 87

Query: 131 KRIQKVDSIAAALILQEVLD 150
           ++   +D  AA  ILQ  LD
Sbjct: 88  EQRAVIDQAAAVAILQSWLD 107


>gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           R3021]
 gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           R3021]
          Length = 134

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 31/114 (27%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG AI                + +T TA  L +F   + I  +         
Sbjct: 7   AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
                 I+GLPLNM+G+E       R F  N +  +  V     DERLTT  A+
Sbjct: 52  WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNVHLQDERLTTTQAR 104


>gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter
           xylosoxidans A8]
 gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter
           xylosoxidans A8]
          Length = 133

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        + + +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           L L+  G E P     R F  N +  +  +     DER +++ AQ++L
Sbjct: 62  LALDAEGGEQPATARCRRFA-NQLHGRFGLAVELVDERGSSMEAQRLL 108


>gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           RM1221]
 gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase
 gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase
 gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase
 gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           RM1221]
 gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 127

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A    +    + +K+  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115

Query: 140 AAALILQE 147
           +A +++++
Sbjct: 116 SAFIMIKD 123


>gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa
           Temecula1]
 gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23]
 gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase
 gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase
 gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase
 gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23]
 gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 155

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN---IAAF 71
           P+  +   D+GT+RIG+A+   G         +    V   A++  +    +        
Sbjct: 9   PDGIVLGFDVGTRRIGVAV---GSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGL 65

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS--- 128
           ++G PL + G + P      AF   + +R   +P V  DER ++V A         +   
Sbjct: 66  VVGDPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYK 124

Query: 129 RKKRIQKVDSIAAALILQEVL 149
           R++    +D+IAAA+IL+  L
Sbjct: 125 RRRDADTLDAIAAAVILERWL 145


>gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct]
          Length = 184

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG++      + A P   +         +EL   I   N +  IIGLP
Sbjct: 42  QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     S + F   V     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 102 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 157

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 158 -KVDALAACVILE 169


>gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
 gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
          Length = 158

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G +RIGLA  DP      P   L R++  +    L        +   ++GLPL+ N
Sbjct: 2   SLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDRN 61

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           G    +    + +   + +  + +P  + +E  ++ +A + L
Sbjct: 62  GQPTEQAMHCQRYGLRLAE-ALQLPLAWINEHSSSWAAGEAL 102


>gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
 gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
          Length = 143

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 3/137 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G +R+G+A+  P    A P   L  ++       LL  I      A ++G+P + +
Sbjct: 8   GFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHTD 67

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
           GS         AF   + +++  +P    DERL++  A+  L       +    K  VD 
Sbjct: 68  GSASETTLQAVAFAQRL-EQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVDQ 126

Query: 139 IAAALILQEVLDRISFL 155
            AA +IL+  L+    L
Sbjct: 127 FAAQIILETWLNEQRLL 143


>gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase
 gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 136

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     S + F   V     RKV++     +E  +T  A+  L +    +   I
Sbjct: 63  LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEFKSKKISHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           PAO1]
 gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2]
 gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           LESB58]
 gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           PAb1]
 gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
 gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase
 gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase
 gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase
 gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58]
 gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
          Length = 144

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           S KP + +   D GT++IG+A+       A     L  +        + + I      A 
Sbjct: 3   SDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAI 62

Query: 72  IIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ 119
           ++GLPLNM+GS  P   S RA      ++ +  +P    DERLTT +A+
Sbjct: 63  VVGLPLNMDGS--PSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAK 109


>gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 141

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 30/149 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GTK IG AI                ++VT TA  L +F   + I  +       
Sbjct: 5   IMAFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDDIEKQI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLP +++G +   +        N +  +  +P    DERL+T  A+  L 
Sbjct: 50  KEWQPDLLVVGLPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTAEARAELF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            M   +      +D  +A +IL+   + +
Sbjct: 110 SMGGYKALSKGNIDCQSAVVILESWFESL 138


>gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
 gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
          Length = 149

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G KRIG AI +   R A P   +  +       ++   I        I+GLP  
Sbjct: 24  ILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVKLIVGLPSY 83

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+E       + F  N +  +  +  +  DER ++          +V   +R +  D+
Sbjct: 84  PDGTEHEMTRRCKRFA-NQLRGRFSLEIIMVDERYSS----------SVLHFQRGKADDA 132

Query: 139 IAAALILQEVLD 150
            AAALILQ+  D
Sbjct: 133 HAAALILQQYFD 144


>gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101]
          Length = 151

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIGLA  D       P P L R +       L S +    I A ++GLPL+  
Sbjct: 3   ALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDAQ 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                +    R +   +  R + +P    +E  ++ +A +
Sbjct: 63  QQPTEQAEHCRRYGERLA-RHLALPLALVNEFASSWAAAE 101


>gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 129

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 66  ENIAAF--IIGLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQ 120
           +   AF  I+GLP +M G         R +  ++  R   +V V  V  DERLTTV+A +
Sbjct: 21  DEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQRVCVRLV--DERLTTVTAHR 78

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
            L    +  +     VD  AA +IL++ +
Sbjct: 79  DLHAAGLKERSFRGIVDQAAAVVILEQAI 107


>gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
 gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
          Length = 206

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+A  +           L +K +      L  FI        I GLPL+
Sbjct: 2   IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T A        K Y  ++  DERLTT   ++I            +K D+
Sbjct: 52  MSGKYTQQTFKTIAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKKDDA 97

Query: 139 IAAALILQEVLDRISFLE 156
           ++AALI Q   +  S  E
Sbjct: 98  VSAALIFQSFFENSSVCE 115


>gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum
           EbN1]
 gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase
 gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1]
          Length = 156

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G  RIG+A+ +   R A     L  +        +   +        ++G+P +++
Sbjct: 20  AFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGMPSHLD 79

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSI 139
           G+        R F  N +  +  +P +  DERL++ +A   L +      + R Q +D++
Sbjct: 80  GTPHEMTARCRRFA-NQLHGRFGLPVLECDERLSSAAADAALAEAGTHDWRARKQVLDAV 138

Query: 140 AAALILQEVLD 150
           AA +ILQ  LD
Sbjct: 139 AAQIILQHFLD 149


>gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           PA7]
 gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase
 gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 144

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP + +   D GT++IG+A+       A     L  +        + + I      A ++
Sbjct: 5   KPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAIVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ 119
           GLPLNM+GS  P   S RA      ++ +  +P    DERLTT +A+
Sbjct: 65  GLPLNMDGS--PSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAK 109


>gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
 gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
          Length = 151

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           S+D+G KRIGLA  D       P P L R +     L L       ++   ++GLPL+  
Sbjct: 3   SLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSA 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120
           G   P V +     + + + + + +P  + +E  +T +A +
Sbjct: 63  GQ--PTVQAVHCQRYGLRLAQTLGLPLAWVNEHSSTWAAGE 101


>gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211]
 gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase
 gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. MIT 9211]
          Length = 145

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + S+D+G +RIG+A  DP          + R      A +L       ++   IIGL
Sbjct: 6   SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120
           PL+  G E     S+  + + + I +++ +P  + +E  +T  A Q
Sbjct: 66  PLSDLGKETK--QSSYCYTYGINIAKELNLPLAWVNEHSSTWEAGQ 109


>gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
 gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
          Length = 167

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 19  IASIDLGTKRIGLAISDP-G---RRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           + ++D+G +RIGLA  DP G   RR     P L R +       L   +    + A ++G
Sbjct: 9   VLALDVGRRRIGLAGCDPLGLTVRRL----PALARGRFPADLQRLQELLAERRVEALVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           LPL+  G    +    R +   +      +P  + +E  +T SA +
Sbjct: 65  LPLDQAGQPTEQARHCRRYGERLAV-GTGLPLAWVNEHGSTWSAAE 109


>gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM
           12804]
 gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase
 gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii]
          Length = 131

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL---VRKKVTQTALELLSFITTENIAAF 71
           P + + + D G K+IG+AI +   R A P   +   +R+       +LL     + +   
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRV--- 58

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
           ++GL L  +G E P     R F + +  R  + V  V  DER +++ AQ++L
Sbjct: 59  VVGLALASDGGEQPATARCRRFANQLRGRYGLAVELV--DERGSSMEAQRLL 108


>gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp.
           novicida U112]
 gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase
 gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 136

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     + + F   V     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 63  LDTQNFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
 gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
          Length = 159

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 20/135 (14%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAA--FIIGLPLN 78
           +D+  +RIG A+S    R A  R  + R+++    L+L +  +  E+  A   ++GLPL 
Sbjct: 36  LDVSKRRIGFAVSQG--RLAFGRGSVERRRLP---LDLKAVRLKVEDTGAEVLVLGLPLR 90

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+  P     R+F   + ++   V   + DER TT  A+ +            + +D 
Sbjct: 91  TDGAHSPAADRVRSFGRVLEEKGYRVE--YQDERFTTQRARALG----------AEDLDE 138

Query: 139 IAAALILQEVLDRIS 153
            AA  IL+  L R++
Sbjct: 139 AAAVQILELWLTRMA 153


>gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 129

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLNM+
Sbjct: 9   GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68

Query: 81  GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVDS 138
           G+  P   S RA      ++ +  V     DERLTT  A+   +     +   R   VD+
Sbjct: 69  GT--PSDMSARAEKFSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126

Query: 139 IAA 141
           IAA
Sbjct: 127 IAA 129


>gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 135

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 36/155 (23%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG AI                +++T TA  L +F   + I  +         
Sbjct: 2   AFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKQIKE 46

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLP +++G +   +        N +  +  +P    DERL+T  A+  L  M
Sbjct: 47  WQPNLLVVGLPTDLHGKDLETITPRAKKFANRLHGRFGLPVELHDERLSTTEARSELFSM 106

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
              +      VD  +A +IL+      S+ E+  G
Sbjct: 107 GGYKALSKGNVDCQSAVVILE------SWFEAQYG 135


>gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P    
Sbjct: 5   ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIP-KGG 62

Query: 81  GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            SE       + FV  +  D+++     F DE  T+  A    +    + +K+  K+DS+
Sbjct: 63  SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115

Query: 140 AAALILQE 147
           +A +++++
Sbjct: 116 SAFIMIKD 123


>gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase
 gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   +
Sbjct: 5   ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGS 63

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
             E      TR   H +   +      F DE  T+  A    +    + +K+  K+DS++
Sbjct: 64  REE----EMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV---ANTRKKDGKLDSLS 116

Query: 141 AALILQE 147
           A +++++
Sbjct: 117 AFIMIKD 123


>gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 136

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     + + F   V     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 63  LDTQDFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR51-B]
 gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR51-B]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G ++IG+AI +       P   +  +       ++   I        ++G PLN
Sbjct: 8   VMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPLN 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS+   + +  A     ++ +   P    DERLT+  A+    D   +       +D 
Sbjct: 68  MDGSDS-EMGARAAKFSRQLNGRFAKPVDLVDERLTSREAKSQSRDRGHNGNYTTDPIDD 126

Query: 139 IAAALILQ 146
            AAALIL 
Sbjct: 127 EAAALILN 134


>gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens
           T118]
 gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase
 gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118]
          Length = 156

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
           Q   ++D G KR G A+ +   R A P+  +  +   +  + AL+L  +       A ++
Sbjct: 33  QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAEGDARFVKIALQLKEWQPD----ALVV 88

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G+P + +G+        R F   +  R   +P    DER TT  A        + R  R 
Sbjct: 89  GVPFHPDGAAHENTLRARRFARQLQGR-FKLPVFEVDERYTTTEA--------LGRGAR- 138

Query: 134 QKVDSIAAALILQEVLDRI 152
              D++AA +IL++ L  I
Sbjct: 139 -DADAMAACIILEQFLRSI 156


>gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 146

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
           I +ID+G KRIG+A S  G       P L RK   Q A  + + +        ++G+P  
Sbjct: 6   IIAIDIGLKRIGVAKSIRGIPLC-LEPIL-RKNRNQAANAVRTLVLELQANVLVVGIPFV 63

Query: 78  ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
                 N S        + FV  +++ +  +  VF+DE  ++  A + L D  + +K   
Sbjct: 64  DDVSKANDSICAMQRRIKHFV-GLLELESKIEIVFFDESFSSKEALEKLDDKKMRKKAHS 122

Query: 134 Q--KVDSIAAALILQEVL 149
           +   +DS+AA +IL+  L
Sbjct: 123 KDGSLDSLAALVILERYL 140


>gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1]
          Length = 136

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           L+    E     + + F   +     RKV++     +E  +T  A+  L ++   +   I
Sbjct: 63  LDTQNFETDITKAAKDFAKEIQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118

Query: 134 QKVDSIAAALILQ 146
            KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130


>gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
 gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
 gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
 gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
          Length = 206

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+A  +           L +K +      L  FI        I GLPL+
Sbjct: 2   IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T A        K Y  ++  DERLTT   ++I            ++ D+
Sbjct: 52  MSGKYTQQTFKTVAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKRDDA 97

Query: 139 IAAALILQEVLDRISFLE 156
           ++AALI Q   +  S  E
Sbjct: 98  VSAALIFQSFFENSSVCE 115


>gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
 gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
          Length = 202

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 31/134 (23%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G  + G AI   G  F      +  K +    ++L+S     N    ++G+PL+
Sbjct: 2   IIAIDYGNSKCGYAI---GNNFISKSGAVKTKDI----MKLIS-----NAKKIVMGIPLS 49

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT-------------VSAQQILIDM 125
           M+G+   +      F +N++++   V  +  DERLTT              SA+QI +D 
Sbjct: 50  MSGNYSTQSLKVLTFANNLVEKGYDVFLI--DERLTTKMASSFGIKDDDAFSARQIFMDF 107

Query: 126 ----NVSRKKRIQK 135
               +V++K R +K
Sbjct: 108 VQNPSVAQKFRKEK 121


>gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8]
 gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase
 gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 218

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+A  +           L +K +      L  FI        I GLPL+
Sbjct: 14  IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T A        K Y  ++  DERLTT   ++I            ++ D+
Sbjct: 64  MSGKYTQQTFKTVAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKRDDA 109

Query: 139 IAAALILQEVLDRISFLE 156
           ++AALI Q   +  S  E
Sbjct: 110 VSAALIFQSFFENSSVCE 127


>gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 138

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID GTKRIGL+I  P R  A     L           +  +I  + I   +IG PL 
Sbjct: 4   ILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGHPLK 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKV 136
            + S  P       F++    +   +     DER ++  A   LI+   N  ++K+ + +
Sbjct: 62  SDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQKKIL 121

Query: 137 DSIAAALILQEVL 149
           D I+A L+LQ+ +
Sbjct: 122 DQISAILLLQDFI 134


>gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma
           proteobacterium HTCC2148]
 gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma
           proteobacterium HTCC2148]
          Length = 98

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G PLNM+GS          F   +  R + +P    DERL++  A+Q   +      
Sbjct: 13  LVVGEPLNMDGSVSELSEKAHKFGRRLGGR-LNLPVQMVDERLSSFEAKQQSRERGHGGD 71

Query: 131 KRIQKVDSIAAALILQEVL 149
                +DS+AA LILQ  L
Sbjct: 72  YNKNPIDSLAAELILQTWL 90


>gi|224032587|gb|ACN35369.1| unknown [Zea mays]
          Length = 146

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 47  LVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L R K  +   A +  + ++  +IA F++G P  + G   P   + +  +   + +   +
Sbjct: 25  LCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQ--PCASAIQVSLAGELCKTGKL 82

Query: 105 ---PFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153
              P+ +WDE  T+   + +L  +N+      + + D  AA  ILQ  LD ++
Sbjct: 83  DDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135


>gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM
           4166]
          Length = 142

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK+IG+A+       A     L  +       ++ + +      A ++GLPLNM+
Sbjct: 9   GFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ 119
           GS  P   S RA  F   +  R   +P    DERLTT  A+
Sbjct: 69  GS--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAK 106


>gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri
           A1501]
 gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas
           stutzeri A1501]
          Length = 142

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D GTK+IG+A+       A     L  +       ++ + +      A ++GLPLNM+
Sbjct: 9   GFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLNMD 68

Query: 81  GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ 119
           GS  P   S RA  F   +  R   +P    DERLTT  A+
Sbjct: 69  GS--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAK 106


>gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase
 gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 136

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIGLA      + A P   +         +EL   +   N +  +IGLP
Sbjct: 3   QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           L+    E     + + F   + +R K  V  +  +E  +T  A+  L ++   +   I K
Sbjct: 63  LDTQDFETDITKAAKDFAKEVKERYKRNVHLI--NEAYSTREARWRLEEVKSKKVSHI-K 119

Query: 136 VDSIAAALILQ 146
           VD++AA +IL+
Sbjct: 120 VDALAACVILE 130


>gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
           4359]
 gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
           4359]
          Length = 207

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 30/142 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G ++ G+A              L +  V     EL  F+   N    + G+PL+
Sbjct: 2   IVAIDYGERKCGVAFGK----------ILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T     +    K Y  ++  DERLTT  A ++            ++ D+
Sbjct: 52  MSGRYSQQTFKTVEVALSF--SKKYETYL-CDERLTTRIASKV-----------SKRDDA 97

Query: 139 IAAALILQEVLDRISFLESSKG 160
           ++AALI Q      SF+E+  G
Sbjct: 98  VSAALIFQ------SFVENPAG 113


>gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
           acid binding / recombinase [Arabidopsis thaliana]
 gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana]
          Length = 254

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLNM 79
            +DLG  R G+AIS    +    +P  V K   Q     LL     E    FIIGLP + 
Sbjct: 85  GVDLGLSRTGIAIS----KGYTVKPLTVLKSRGQKLETRLLEIAEEEEADEFIIGLPRSS 140

Query: 80  NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +G E  + +  R+    +      + +  +VF DE  TT  A   +I M +S+ +R  + 
Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVF-DEHGTTSEASDRMIVMGLSKSERQNRS 199

Query: 137 DSIAAALILQ 146
           D+ AA ++L+
Sbjct: 200 DAYAAVILLE 209


>gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
           69.14]
 gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
           69.14]
          Length = 141

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 30/148 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GTK IG AI                +++T TA  L +F   + I  +       
Sbjct: 5   IMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDEIEKQI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLP +++G +   +        N +  +  +P    DERL+T  A+  L 
Sbjct: 50  KEWQPNLLVVGLPTDLHGKDLDTITPRAKKFANRLHGRFGLPVELHDERLSTAEARSELF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDR 151
                +      +D  +A +IL+   +R
Sbjct: 110 AHGGYKALSKGNIDCQSAVVILESWFER 137


>gi|255626817|gb|ACU13753.1| unknown [Glycine max]
          Length = 110

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 56  ALELLSFITTENIAAFIIGLPLNMN--GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111
           A +L S I   ++  F+IG+P + +   S+  +V   + F+ N+   K+   V + +W+E
Sbjct: 2   ASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQV---KVFIDNLCRTKMLEGVKYAYWNE 58

Query: 112 RLTTVSAQQILIDMNVSRKKRIQK-VDSIAAALILQEVLDRIS 153
             T+ + + +L  +N++     +  +D  AA  ILQ  LD ++
Sbjct: 59  SFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101


>gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
           ATCC 43553]
 gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
           ATCC 43553]
          Length = 136

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + +   D G K+IG+AI +   R A P   +  +        + + +        ++G
Sbjct: 5   PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           L L+ +G E       R F  N +  +  +     DER +++ AQ++L
Sbjct: 65  LALDADGGEQAATARCRRFA-NQLHGRFGIAVELVDERGSSMEAQRLL 111


>gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
 gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
          Length = 141

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 30/149 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GTK IG AI                +++T TA  L +F   + I  +       
Sbjct: 5   IMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKQI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++G P +++G +   +        N +  +  +P    DERL+T  A+  L 
Sbjct: 50  KEWQPDLLVVGYPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTTEARAELF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            M   +      +D  +A +IL+   + +
Sbjct: 110 SMGGYKALSKGNIDCQSAVVILESWFESL 138


>gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
 gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
          Length = 141

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 16  NQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +QP  I  +D+G  RIG+A  D         P L R       L L   I+  ++ A +I
Sbjct: 5   SQPCSILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVEALVI 64

Query: 74  GLPLN-MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           G+PLN +       ++  R   H  + + + +P  + +E  +T S      D       +
Sbjct: 65  GIPLNDLAQITKQAIYCRRYGKH--LAQTLRLPVAWVNENGSTWSTS----DQYKIYNDK 118

Query: 133 IQKVDSIAAALILQE 147
             ++DS+ AAL+L++
Sbjct: 119 SGRLDSMVAALLLEQ 133


>gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
 gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
          Length = 148

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D+G KRIGLA  D       P P L R +     L L       ++   ++GLPL+  G
Sbjct: 1   MDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAG 60

Query: 82  SEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120
              P V +     + + + + + +P  + +E  +T +A +
Sbjct: 61  Q--PTVQAVHCQRYGLRLAQTLGLPLAWVNEHSSTWAAGE 98


>gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday
           junction resolvase in mycoplasmas and B. subtilis)
           [uncultured gamma proteobacterium HF0010_11B23]
          Length = 128

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D GTK IG+ I++       P P +       T L+ L      NI   +IG+P  
Sbjct: 8   VLSLDYGTKNIGICIAETYTGQTKPLPVIENNDSFYTELDNLLKEWRPNIV--LIGIPPK 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+      ++  +A++ N             + ++  +   +      + + K+    DS
Sbjct: 66  MSSDFNDGLNEAKAYIIN-------------EHKIKVIEVNEDFTTQGLDKCKKNHMKDS 112

Query: 139 IAAALILQEVLDRIS 153
            +A LI Q+  + I 
Sbjct: 113 YSAELIFQDWFNDID 127


>gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549]
          Length = 138

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLPL+  
Sbjct: 9   AIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPLDTQ 68

Query: 81  GSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             E     + + F   V     RKV++     +E  +T  A+  L ++   +   I KVD
Sbjct: 69  DFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI-KVD 123

Query: 138 SIAAALILQ 146
           ++AA +IL+
Sbjct: 124 ALAACVILE 132


>gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 140

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 30/151 (19%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ I + D GTK IG AI                ++VT TA  L +F   + I  +    
Sbjct: 2   SRTIMAFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDEIE 46

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLP++++G     +        N +  +  V     DERL+T  A+ 
Sbjct: 47  KQIKEWQPHLIVVGLPMDLHGKALESITQRAKKFANRLHGRFGVDVELHDERLSTTEARS 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            L  M   +      VD  +A +IL+   + 
Sbjct: 107 ELFAMGGYKALTKGNVDCQSAVVILESWFEH 137


>gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium
           SWAT-3]
 gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium
           SWAT-3]
          Length = 140

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 30/147 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GTK IG AI                +++T TA  L +F   + I  +       
Sbjct: 5   IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLP +++G     +        N +  +  V     DERL+T  A+  L 
Sbjct: 50  KEWQPNLIVVGLPTDLHGRALETITPRAKKFANRLKGRFGVDVELHDERLSTAEARADLF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
           DM   +      VD+ +A +IL+   +
Sbjct: 110 DMGGYKALSKGNVDNQSAVVILESWFE 136


>gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
 gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32]
 gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
 gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32]
          Length = 140

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 36/157 (22%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GTK IG AI                +++T TA  L +F   + I  +       
Sbjct: 5   IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLP +++G +   +        N +  +  V     DERL+T  A+  L 
Sbjct: 50  KEWQPNLIVVGLPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +M   +      VD+ +A +IL+      S+ E+  G
Sbjct: 110 EMGGYKALSKGNVDNQSAVVILE------SWFEAQYG 140


>gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
          Length = 71

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 31/65 (47%)

Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
          + D GTK IG+AI       A P P +  +  T     +   +        I+GLPLNM+
Sbjct: 7  AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66

Query: 81 GSEGP 85
          G+E P
Sbjct: 67 GTEQP 71


>gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
 gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
          Length = 230

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  +  ID GT   G+AI         P+  +  +K+    LE L  +   +    + GL
Sbjct: 6   NLKVYGIDYGTSNCGIAILKQDVNIPLPKETIKSEKL----LEFLVSLDLSHDDLIVFGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P++M+G      +S ++F+       I  K+     F DERLTT S     +   VS KK
Sbjct: 62  PISMSGR-----YSKQSFLSIDEAIKIKEKIGCKIYFVDERLTTSSLYS-EVRGQVSYKK 115

Query: 132 RIQKVDSIAAALIL 145
             +  D  ++ LIL
Sbjct: 116 VKRTKDQNSSVLIL 129


>gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116]
          Length = 136

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 30/147 (20%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
           + D GTK IG AI                ++VT TA  L +F   + I  +         
Sbjct: 2   AFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDDIEKQIKE 46

Query: 72  ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 ++GLP +++G +   +        N +  +  +P    DERL+T  A+  L  +
Sbjct: 47  WQPDLLVVGLPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTAEARAELFSI 106

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
              +      +D  +A +IL+   + +
Sbjct: 107 GGYKALSKGNIDCQSAVVILESWFENL 133


>gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis
          MIT 98-5491]
 gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT
          98-5491]
 gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT
          98-5491]
          Length = 133

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
          Q I ++D+G KRIG+A S        P P ++RK   Q A E+   I    I   I+G+P
Sbjct: 2  QSILALDIGLKRIGIAKSI--HNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGIP 59


>gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
 gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
          Length = 155

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67
           +++P+  +   D+G++RIG+A+      G R       ++    T      L  +  E  
Sbjct: 6   AIRPDGTVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHATGPDWAALDRVHKEWR 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               +IG PL ++  + P      AF   + +R   +P V  DER ++V A Q       
Sbjct: 62  PDGLVIGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERA 120

Query: 128 SRKKR 132
             +KR
Sbjct: 121 DGRKR 125


>gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1]
 gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1]
          Length = 152

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           + D G KRIG+A+ +   R A     +           +   I      A ++GLPL+ +
Sbjct: 13  AFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRPDALVVGLPLHPD 72

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           G+        R F  N ++ +  +P  + DER ++V A+  L
Sbjct: 73  GTPHEMTQQARRFG-NQLNGRFSLPVSWIDERYSSVEARAQL 113


>gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
 gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
          Length = 140

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 30/147 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
           I + D GTK IG AI                +++T TA  L +F   + I  +       
Sbjct: 5   IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49

Query: 72  --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
                   ++GLP +++G +   +        N +  +  V     DERL+T  A+  L 
Sbjct: 50  KEWQPNLIVVGLPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLF 109

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +M   +      VD+ +A +IL+   +
Sbjct: 110 EMGGYKALSKGNVDNQSAVVILESWFE 136


>gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
 gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
          Length = 141

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 55/135 (40%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      K       ++ + +        ++GL
Sbjct: 3   SRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +++G     + +      N +  +  +     DERL+T  A+  L +M   +      
Sbjct: 63  PTDLHGKALEEITARAKKFANRVHGRFGLQVELHDERLSTAEARAELFEMGGYKALSKGN 122

Query: 136 VDSIAAALILQEVLD 150
           VD  +A +IL+   +
Sbjct: 123 VDCQSAVVILESWFE 137


>gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53]
          Length = 125

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 29  IGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
           +G AISD    F+     F       +   ++  F+    I  FIIG PLN  G +    
Sbjct: 1   MGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTC 60

Query: 88  HSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
                F+ ++    D+K+ +     +E  ++  A +IL   N+  KK+  K D +AA +I
Sbjct: 61  LLIDEFIIHLEKNFDQKIKLI----NESYSSRKASEILHQANIKNKKQKDKKDMLAAKII 116

Query: 145 LQEVLD 150
           LQ+ LD
Sbjct: 117 LQDYLD 122


>gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
 gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
          Length = 134

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G ++ G+A+     + A P   L        A    +++   +++  +IGLP  
Sbjct: 6   ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G E P     R  +         +P  + DE L++  A+        +R    ++VD+
Sbjct: 66  RDGKEHPLAAPIR-RIGAKCQEAFGLPVHYIDEYLSSHEAR--------ARLPGEKEVDA 116

Query: 139 IAAALILQEVL 149
           +AAA+I ++ L
Sbjct: 117 MAAAIIAEDWL 127


>gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori
           India7]
          Length = 134

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R+   Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAVLLNG--VILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ---- 134
                  R+     F+  ++D K  +  VF +E  ++V A + L  +  ++ KR+     
Sbjct: 60  SYADTNARIEH---FIK-LVDFKGEI--VFINEDNSSVEAYENLEHLG-NKNKRLAIKDG 112

Query: 135 KVDSIAAALILQEVLDRI 152
           ++DS++A  IL+    ++
Sbjct: 113 RLDSLSACRILERYYQQV 130


>gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32]
          Length = 134

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAMLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF DE  +++ A + L  +    K+   +  +
Sbjct: 60  SYADTNARIEH---FI-KLLDFKGEI--VFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQQV 130


>gi|223996479|ref|XP_002287913.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977029|gb|EED95356.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 242

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 19/109 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKK----------VTQTALELLSFITT 65
           +  +D+  +RIG+A+S+  + F+ P      L++ +            ++ LEL + +  
Sbjct: 29  VMGLDITRERIGIAVSEHPKHFSEPLALNSILLQDRDSSSNRSKGIAKESLLELEAAVRK 88

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-----PFVFW 109
            ++ AF++  PLN  G  G +       + +++D+   V     PF  W
Sbjct: 89  HHVCAFVVNWPLN-EGRMGEQCGKVLQVLDSVMDQSNSVVTRKRPFTLW 136


>gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath]
 gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase
 gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus
           str. Bath]
          Length = 151

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G + IG+A+       A P   L  +   +    +   I     A  ++GL    +
Sbjct: 15  GFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVVGLSHQQD 74

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSI 139
           GSE P    T  F   +  R   +P    DE LTT  ++         +    ++V D +
Sbjct: 75  GSENPITAPTLRFCRQLEGR-YRLPVYTVDETLTTAESRTHFYQRRRRKSVEFEQVKDEM 133

Query: 140 AAALILQ 146
           AA LILQ
Sbjct: 134 AAQLILQ 140


>gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 190

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLPLN 78
            +D G  R G+A++        P+P  + K +  T+    ++  +  E  +  ++GLPL+
Sbjct: 22  GVDYGLVRTGVAVT----VGYDPKPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLPLH 77

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-----VPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
            NG+   + + T  FV  +  + +      V    +DER T+ +A       N   +   
Sbjct: 78  KNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRN-PHQPLY 136

Query: 134 QKVDSIAAALILQ 146
             +D+ AA +IL+
Sbjct: 137 GTLDADAACIILE 149


>gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
 gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
          Length = 141

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 36/160 (22%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
           ++ I + D GTK IG AI                +++T TA  L +F   + I  +    
Sbjct: 2   SRTIMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIE 46

Query: 72  -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      ++GLP +++G +   +        N +  +  V     DERL+T  A+ 
Sbjct: 47  KQIKEWQPDLVVVGLPTDLHGRDLETITPRAKKFANRLHGRFGVAVELHDERLSTTEARA 106

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L  M   +      VD  +A +IL+      S+ E+  G
Sbjct: 107 DLFAMGGYKALSKGNVDCQSAVVILE------SWFEAQYG 140


>gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. campestris str. B100]
 gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase
 gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv.
           campestris]
          Length = 155

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 12  SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67
           +++P+  +   D+G++RIG+A+      G R       ++           L  +  E  
Sbjct: 6   AIRPDATVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHANGPDWVALDRVHKEWR 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
            A  ++G PL ++  + P      AF   + +R   +P V  DER ++V A Q       
Sbjct: 62  PAGLVVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERA 120

Query: 128 SRKKR 132
             +KR
Sbjct: 121 DGRKR 125


>gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri CARI]
 gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri CARI]
          Length = 138

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G KRIGL+I++  R  A     +    +  T LE+  ++  E+I   +IGLP+ 
Sbjct: 4   ILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLIST-LEM--YLKYEDIDTIVIGLPIK 60

Query: 79  MNGSEGPRVHSTRAFVH-------NMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSR 129
                 P     + F+        N+I +++       DER T+  A   L++      +
Sbjct: 61  YYNYLFPIEKKIKKFIKIIKYKYPNLIIKRL-------DERFTSKIANYYLLNSVFKKKK 113

Query: 130 KKRIQKVDSIAAALILQEVL 149
           +K    +D I+A L+LQ+ +
Sbjct: 114 RKNKSLLDKISATLLLQDYI 133


>gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
 gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
          Length = 161

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           + +   P + + ++D+G +RIGLA  DP      P   L R         L   +    +
Sbjct: 1   MSRQPPPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRV 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSA 118
            A ++GLPL+   S+ P V +     +   + + + +P  + DE  ++  A
Sbjct: 61  QALVVGLPLDA--SQQPTVQARHCRRYGQRLAQALELPLAWVDEHGSSWEA 109


>gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase
 gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase
 gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum
 gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
           ++DLGTK  G AISD     A      + ++   TA+     E++     E I   ++G 
Sbjct: 5   ALDLGTKSCGFAISDLLGIIASGLDNFIYEENDFTAVLAKIDEIMINYHHE-IDTIVLGY 63

Query: 76  PLNM-NGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           P N+ +GS+  R +   +F      H +   K+ +  V+ DER +T  A Q L +  V  
Sbjct: 64  PTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKI--VYEDERFSTKIATQRLKNSCVKA 121

Query: 130 KKRIQKVDSIAAALILQEVLDRISF 154
            K  +  D ++A +IL+  L +  F
Sbjct: 122 AKIKKVKDKMSAVVILESYLSKNHF 146


>gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 140

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
           I  +D G    GL+I+D  + FA    F +    T+  +  L SF+  E I   +IGLP 
Sbjct: 4   ILGMDYGKVITGLSITDDEQIFA----FGLDSVPTEKLMSFLESFLYHEKIDKIVIGLPK 59

Query: 78  NMNGSEGPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +N  +   + +  + F+++   R   +     DER T+  A   +I++ + +K+R + +
Sbjct: 60  KLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKKVI 119

Query: 137 -DSIAAALILQEVLDR 151
            + I+A +ILQ  L R
Sbjct: 120 LNQISATIILQSYLAR 135


>gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102]
 gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase
 gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 157

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D+G KRIGLA  DP      P   L R +       L        +   ++GLPL+
Sbjct: 7   VLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLVVGLPLD 66

Query: 79  MNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTVSAQQ 120
             G   P   +     +   + + + +P  + +E  +T +A +
Sbjct: 67  AAGQ--PTAQADHCLRYGRRLAQALQLPLAWVNEHSSTWAAGE 107


>gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division
           TM7 single-cell isolate TM7a]
          Length = 75

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVDSIAAALILQEVLDRIS 153
           +   F DER TT  A+  L   N S+K   +R + VD +AA++ILQ+ LD ++
Sbjct: 25  IQIFFVDERYTTTEAEHYL--KNYSKKNGKERRKVVDMVAASIILQKYLDTLT 75


>gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 159

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + SID G + +G+A+SDP  R+               A  ++  ++  + +  I+G P +
Sbjct: 18  VISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIMKVVS--DFSGIIVGTPFS 75

Query: 79  MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              + G  +     F   +  + RK   P +  DE  +T     +L  ++ SR+K  +  
Sbjct: 76  HIRNNG-WLDFIDKFAQKLSEVTRK---PILMCDESSSTSDVMILLSSLSRSRQKEWK-- 129

Query: 137 DSIAAALILQEVLDRI 152
           D IAA  IL++ L  I
Sbjct: 130 DKIAACCILEKTLCTI 145


>gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Gambia94/24]
          Length = 134

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
                  R+     F+  ++D K  +  VF +E  ++V A + L  +    KK   K   
Sbjct: 60  SYADTHARIEH---FI-KLVDFKGEI--VFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQQV 130


>gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens]
          Length = 548

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFII 73
           +P   +D G +R G+ +   GR +A  RP  V +    +T  A  +++    E   AF++
Sbjct: 474 EPTLGVDFGLRRTGVCV---GRGYA-SRPLEVVENCGNLTAHAAAIVALALREGATAFVV 529

Query: 74  GLPLNMNGSE 83
           GLPL+ +GSE
Sbjct: 530 GLPLDRDGSE 539


>gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1]
 gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1]
          Length = 457

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSF 62
           ED+++      PI  +DL  KRI LA+  PG R A P  FL R     K+  T  E ++ 
Sbjct: 80  EDILELQGHGGPIV-LDLLLKRI-LALPLPGLRIARPGEFLERAFLNNKIDLTQAEAVAD 137

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV--FWDERLTTVSAQQ 120
           +   N          ++ G    R+   +AF  N+ID + YV     F +E +  +S  +
Sbjct: 138 LINANSEQAARSAVNSLQGVFSDRI---KAFSQNLIDLRAYVEAAMDFSEEEINFLSDGK 194

Query: 121 ILIDMN--VSRKKRIQ 134
           I   +N  ++  K++Q
Sbjct: 195 IEGQLNNIINELKKVQ 210


>gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Lithuania75]
          Length = 134

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A    G     P   ++R+   Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAALLNG--VILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQQV 130


>gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38]
 gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38]
          Length = 134

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF +E  +++ A   L  +    K+   +  +
Sbjct: 60  SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQKV 130


>gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX]
 gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase
 gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX]
          Length = 159

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPLN 78
           ++D G  RIG+A SDP    A P   + R    + + A  +L +   E     I+G P +
Sbjct: 8   AVDPGAARIGVARSDPDGILAIPVETIRRGPGDLDRIAALVLEYEARE----VIVGYPAS 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-------IDMNVSRKK 131
           ++G+EG    + RAF   +  R   VP    DERLTTV+A+  L              + 
Sbjct: 64  LSGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRA 123

Query: 132 RIQKVDSIAAALILQEVLD 150
           R   +D  AA ++LQ  LD
Sbjct: 124 RRSVIDQAAATVLLQNALD 142


>gi|328772736|gb|EGF82774.1| hypothetical protein BATDEDRAFT_22908 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 961

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRR 39
           ED +KSLK NQ +     G ++IG+AISDP ++
Sbjct: 745 EDAIKSLKMNQAVIE-KTGDRKIGVAISDPTKK 776


>gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori
           26695]
 gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase
 gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 134

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A    G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAALLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQKV 130


>gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30]
          Length = 134

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAMLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  SYADTNARIEH---FI-KLLDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQQV 130


>gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia
           R551-3]
          Length = 164

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D+G++RIG+AI       A     +           +   I        ++G PL 
Sbjct: 22  VLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLVVGDPLT 81

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRKKR 132
           ++G + P     + F   + +R   +P V  DER ++V +A++  ++    RK+R
Sbjct: 82  LDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEGRKRR 135


>gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Shi470]
 gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase
 gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Shi470]
          Length = 134

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  SYADTNARIEH---FIK-LLDFKGEI--VFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACGILERYCQQV 130


>gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 156

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           DL  S+   + I   D+G KRIG+A+   G     P   ++R    Q + +L   +  +N
Sbjct: 14  DLTSSIACKRLIIG-DVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKN 70

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++G P         R+     +   ++D K  +  VF +E  +++ A + L  +  
Sbjct: 71  IQVLVVGKPNESYADTNARIE----YFIKLLDFKGEI--VFINEDRSSIEAYENLEHLGK 124

Query: 128 SRKK---RIQKVDSIAAALILQEVLDRI 152
             K+   +  ++DS++A  IL+    ++
Sbjct: 125 KNKRLATKDGRLDSLSACRILERYCQQV 152


>gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83]
          Length = 134

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A    G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIATLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     +   ++D K  +  VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  SYADTNARIE----YFIKLLDFKGEI--VFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEVLDRI 152
           +DS++A  IL+    ++
Sbjct: 114 LDSLSACRILERYCQQV 130


>gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 136

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
           + D G +R+G+A+ +     A  RP            E ++ +  E    A ++G+P + 
Sbjct: 15  AFDFGVRRVGVAVGNT--LLAEARPLKTVAAEGDARFEAIARLIDEWQPDALVVGVPFHP 72

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
           +G+E       R F   +  R   +P    DER TTV
Sbjct: 73  DGAEHDNTRRARRFARQLHGR-FRLPVHEVDERYTTV 108


>gi|290999126|ref|XP_002682131.1| guanine nucleotide binding protein alpha subunit [Naegleria
           gruberi]
 gi|284095757|gb|EFC49387.1| guanine nucleotide binding protein alpha subunit [Naegleria
           gruberi]
          Length = 657

 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQ 119
           +I T  + +F +G+ L +N  +  +  +T+    N  M+D  +Y  F  +D R+T++ ++
Sbjct: 300 YIITNLLQSFSLGVSLYLNEVDAIKNGTTKVTRENRFMLDETLYEKFKEFDSRVTSLQSR 359

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
             L D  +S+  + + V S+     +++VL+R +  +S
Sbjct: 360 YTLFD--ISKLPQKEFVVSMWEDTDVRKVLNRYALTDS 395


>gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
 gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
          Length = 134

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 11/131 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+   G     P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNK 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+     F+  ++D K  +  VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  SYTDTNARIEH---FI-KLLDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQ 146
           +DS++A  IL+
Sbjct: 114 LDSLSACRILE 124


Searching..................................................done


Results from round 2




>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 160

 Score =  232 bits (592), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL
Sbjct: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ
Sbjct: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG
Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160


>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 167

 Score =  217 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 140/159 (88%), Positives = 152/159 (95%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL
Sbjct: 1   MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ
Sbjct: 61  SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+
Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159


>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
 gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
          Length = 160

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
             L ++D +  L PN  +  +DLGTK IGLA+SD GR  A P   + RKK TQ A +LL 
Sbjct: 5   PALSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLD 64

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
               + ++  ++GLPLNM+GSEGPR  +TRAF  N+  +K  +P  +WDERL+T +  + 
Sbjct: 65  ICAKQEVSGLVLGLPLNMDGSEGPRAQATRAFCRNL-SQKTELPITYWDERLSTAAVTRT 123

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           L++ + SR KR + VD +AAA ILQ  LDR+  + +S
Sbjct: 124 LLEADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160


>gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
           Y25]
 gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
           Y25]
          Length = 156

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +ED   +L P + +  +DLGT  IG+A+SD     A P   + RKK +  A  LL
Sbjct: 1   MICESVEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I   NIA  ++GLPLNM+GSEGPR  STRAF  N+  R   +P V+WDERL+TV+A++
Sbjct: 61  KIIAARNIAGIVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTDLPIVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ + SRK+R + +D +AA  ILQ VLDR+  L  
Sbjct: 120 ALLEADTSRKRRDEVIDHVAAGFILQGVLDRLRHLRR 156


>gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum
           SL003B-26A1]
 gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
           gilvum SL003B-26A1]
          Length = 166

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
             L +ED V +L P   +  +DLGT+ IGLA+SD GR  A P   + R+K T  A +LL 
Sbjct: 5   PSLSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLK 64

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                 +   ++GLPLNM+GSEGPRV +TRAF  N+ ++   +P  +WDERL+T +  + 
Sbjct: 65  ICAEHRVGGLVLGLPLNMDGSEGPRVQATRAFARNLAEK-TDLPITYWDERLSTAAVTRT 123

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           LI+ + SR +R + VD +AAA ILQ  LDR+ +L  S+
Sbjct: 124 LIEADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161


>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
           Y4I]
 gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
           Y4I]
          Length = 157

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            ED   +L P   +  +DLGTK IG+A+SD     A P   + RKK +  A  LL  I  
Sbjct: 6   FEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +I+  ++GLP NM+G+EGPR  STRAF  N++ +   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RDISGILLGLPRNMDGTEGPRCQSTRAFARNLM-QLTDLPISFWDERLSTVAAEKALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + +RK+R + +D +AA+ ILQ  LDR+  L++ 
Sbjct: 125 DTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157


>gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
          Length = 164

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021]
 gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
 gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
 gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
          Length = 165

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SF   E IAAFIIGLP+NM+GSEGPR  +TRAFV NM   K  +PFV WDERL+TV+A++
Sbjct: 61  SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNM-GEKTDIPFVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           +LI+M+VSRKKR +++DS AA+ ILQ  LDR++ L    
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158


>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
 gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
          Length = 165

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 1/153 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
             L +ED   +L  +  +  IDLGTK IGLA++D GR+ A P   + RKK TQ    LL 
Sbjct: 5   PSLSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLD 64

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                 +   +IGLPLNM+G+EGPR  +TRAFV N+  +K  +P  +WDERL+T +  + 
Sbjct: 65  LCHEHGVFGLVIGLPLNMDGTEGPRCQATRAFVRNLA-QKTEIPITYWDERLSTAAVTRT 123

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
           LI+ + SR +R + VD +AA  ILQ  LDR+++
Sbjct: 124 LIEADRSRARRAELVDKMAATYILQGFLDRVNY 156


>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
 gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
          Length = 162

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 119/159 (74%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ +EDL   L P Q IA +DLGTK IGLA+SD  R  A PRP + R+K T  A++LL
Sbjct: 1   MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + + A +IGLP+NM+GSEGPRV +TRAFV NMI++   +PFVFWDERL+TV+A++
Sbjct: 61  TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIEK-TDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            LI+M+VSRKKR +++DS AA+ ILQ  LDR+  L ++ 
Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAAA 158


>gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601]
          Length = 158

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IED   +L  ++ +A +DLGTK IG+A+SD     A P   + RKK T  A  LL
Sbjct: 1   MIHDEIEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    I   ++GLP NM+GSEGPR  STRAF  N   R    P  FWDERL+TV+A++
Sbjct: 61  EILVKREIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SR KR + +D +AA+ ILQ  LDR+  L ++
Sbjct: 120 ALLEADTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157


>gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42]
 gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase
 gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN
           42]
          Length = 164

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PF++WDERL+TV+A++
Sbjct: 61  DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +LI+M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159


>gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652]
 gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase
 gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652]
          Length = 164

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +A F+IGLP+NM+GS GPRV +TRAFV NM + K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EEKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
 gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
          Length = 157

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     ED   +L     +A +D G K +G+AISD     A P   + RKK T  A  L 
Sbjct: 1   MIYDEFEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    I   ++GLP NM+GSEGPR   TRAF  N+  R   +P  FWDERL+TV+A++
Sbjct: 61  EIVKKREIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-SRLTELPIGFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ + SRK+R + +D +AA+ ILQ  LDR+  L++
Sbjct: 120 ALLEADTSRKRRAELIDHVAASYILQGALDRMRHLKN 156


>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
 gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
          Length = 158

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I     +L    PI  +DLGTK IG+AISD     A P   + RKK +  A  LL
Sbjct: 1   MICETIGAFAMTLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
              T   +A  ++GLP NM+GSEGPR  STRAF  N+ +    +P  FWDERL+TV+A++
Sbjct: 61  EIATQREVAGLVLGLPRNMDGSEGPRCQSTRAFARNL-EPLTELPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            L++ + SRK+R + +D++AA+ ILQ VLDR++ + +++
Sbjct: 120 ALLEADTSRKRRAEVIDNVAASYILQGVLDRLTHMRAAQ 158


>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771]
          Length = 166

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 3   MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 63  DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161


>gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 156

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ +E+   ++   + IA +DLGTK IGLA+SD G+RFA PR  L R K T  A  L+
Sbjct: 1   MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  +NI   +IGLPLNM+GSEGPR  +TRAF+ N   R    P + WDERL+TV+A++
Sbjct: 61  AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRN-YSRFDERPVLLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ +VSRKKR +++DS AA+ ILQ  LDR+S L S
Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156


>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 164

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR  + R K T  A  LL
Sbjct: 1   MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase
 gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus]
          Length = 159

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    ++D   +L     +A +DLGTK IG+A+SD  R  A P   + R+K T    +L+
Sbjct: 1   MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLM 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    IA F++GLP+NM+GSEGPR  STRAF  N+ ++   +P  FWDERL+TV+A++
Sbjct: 61  KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +++ ++SRK+R + VD +AA  ILQ  LDR++ L  + G
Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159


>gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
 gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
 gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
          Length = 158

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +E   ++L     +A +DLGTK IG+A+SD  R  A P   + R K T  A  LL
Sbjct: 1   MICENVETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    +   ++GLP NM+GSEGPR  STRAF  N+ +R   +P  FWDERL+TV+A++
Sbjct: 61  KIVQDRALVGLVLGLPRNMDGSEGPRAQSTRAFARNL-ERLTPLPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            L++ + SRK+R + +D +AA  ILQ  LDR+ FL  ++
Sbjct: 120 ALLEGDTSRKRRAEVIDQVAAGYILQGALDRLRFLGRTE 158


>gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
 gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
 gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
 gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
          Length = 157

 Score =  200 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     E    ++    PIA +D G K +G+AISD     A P   + RKK T  A  L 
Sbjct: 1   MIYDDFETFAAAVPNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    + A ++GLP NM+G+EGPR   TRAF  N+      +P  FWDERL+TV+A++
Sbjct: 61  EIVKDREVGALLLGLPRNMDGTEGPRCQKTRAFARNLAK-LTELPIGFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D +AA+ ILQ  LDR+  +++ 
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIKAG 157


>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 157

 Score =  200 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE+    L P + +A +DLGTK IG+A+SD     A P   + RKK TQ A  L+
Sbjct: 1   MIHEQIEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    IA  ++GLP NM+GSEGPR  STRAF  N   +    P  FWDERL+TV+A++
Sbjct: 61  EILRQREIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SR+KR + +D +AA+ ILQ VLDR+  L S+
Sbjct: 120 ALLEADTSRRKRAELIDHVAASYILQGVLDRLRNLRSA 157


>gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
 gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
          Length = 162

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 1/159 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
             L +ED V ++     +  +DLGTK IGLA+SD G   A P   + RKK T  A +LL+
Sbjct: 5   PALSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLT 64

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
               + +   ++GLPLNM+GSEGPR  +TRAFV N+  +K  +P  +WDERL+T +  + 
Sbjct: 65  ICAKQGVGGIVLGLPLNMDGSEGPRAQATRAFVRNL-SQKTDLPITYWDERLSTAAVTRT 123

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           L++ + SR KR   VD +AAA ILQ  LDR+ F+    G
Sbjct: 124 LLEADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162


>gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
 gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
          Length = 165

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 88/159 (55%), Positives = 115/159 (72%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SF   E IAAFIIGLP+NM+GSEGPR  +TRAFV  M   K  +PFV WDERL+TV+A++
Sbjct: 61  SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTM-GEKTDIPFVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           +LI+M+VSRKKR +++DS AA+ ILQ  LDR++ L    
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158


>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase
 gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 163

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  L+
Sbjct: 1   MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
 gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
          Length = 157

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     E    ++    PIA +D G K +G+AISD     A P   + RKK T  A +L 
Sbjct: 1   MIYDDFEAFAAAVPSLSPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    I A ++GLP NM+G+EGPR   TRAF  N+  +   +P  FWDERL+TV+A++
Sbjct: 61  EIVKAREIGALLLGLPRNMDGTEGPRCQKTRAFARNL-SQLTDLPIGFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D +AA+ ILQ  LDR+  L++ 
Sbjct: 120 ALLEADTSRKRRSEVIDHVAASYILQGALDRMRHLKTG 157


>gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
 gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
          Length = 159

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    ++D   +L     +A +DLGTK IG+A+SD  R  A P   + R+K +    +L+
Sbjct: 1   MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLM 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    IA F++GLP+NM+GSEGPR  STRAF  N+ ++   +P  FWDERL+TV+A++
Sbjct: 61  KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +++ ++SRK+R + VD +AA  ILQ  LDR++ L  + G
Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159


>gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 157

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            ED   +L     +  +D G K IG+A+SD     A P   + RKK T  +  LL  I+ 
Sbjct: 6   FEDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIISG 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +I   I+GLP NM+GSEGPR  STRAF  N+  R   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RDINGIILGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SRK+R + +D +AA+ ILQ  LDR+  ++S 
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157


>gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 154

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 92/150 (61%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            E+   +L P Q +  +DLG K IG+A+SD  R  A P   + RKK    +  LL   T 
Sbjct: 6   FEEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLLEIATD 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEGPR  STRAF  N+  +   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  REIGGIVLGLPRNMDGSEGPRCQSTRAFARNL-SQLTDIPIGFWDERLSTVAAKKALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + +RK+R Q +D +AA  ILQ  LDR+ FL
Sbjct: 125 DTTRKRRGQVIDHVAAGYILQGALDRLRFL 154


>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
 gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
 gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
          Length = 158

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR  + R K T+ A  LL
Sbjct: 1   MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E +AAF+IGLP+NM+GS GPRV +TRAFV  M ++   +PFV+WDERL+TV+A +
Sbjct: 61  AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAEK-TDIPFVYWDERLSTVAATR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L S+
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157


>gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
 gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
          Length = 156

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE    +L P Q +  +DLGTK IG+A+SD  R  A P   + RKK    A  L 
Sbjct: 1   MIHETIEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQ 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    I   I+GLP NM+G+EGPR  STRAF  N        P  +WDERL+TV+A++
Sbjct: 61  ALIAGRRIGGLILGLPRNMDGTEGPRCQSTRAFARNFA-ALWDGPIGYWDERLSTVAAEK 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ + +RK+R + +D +AA+ ILQ  LDR+ FL +
Sbjct: 120 ALLEADTTRKRRAEVIDHVAASYILQGALDRLRFLGA 156


>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
 gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 164

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159


>gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
 gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
 gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
          Length = 164

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 91/155 (58%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L IEDL   L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A  LL
Sbjct: 1   MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E +AAF+IGLP+NM+GS GPRV +TRAFV +M D+   +PFV+WDERL+TV+A++
Sbjct: 61  AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMADK-TALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154


>gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1]
 gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase
 gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
          Length = 160

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS++ IE+L K+    +P+A +DLGTK IG+AISD G  FA PR +L RKK  + A  LL
Sbjct: 1   MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             ++ EN    I+GLP+NM+GSEGPR  STRAFV N+      +PF FWDERL+TV+A++
Sbjct: 61  HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNL-QPLTKLPFAFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            LI+M+VSR KR Q++DS AAA ILQ  LDR+  L +  G
Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159


>gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
 gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase
 gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
          Length = 157

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            ED   +L     +  +D G K IG+A+SD     A P   + RKK T  +  LL  I  
Sbjct: 6   FEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAG 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +I   ++GLP NM+GSEGPR  STRAF  N+  R   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RDINGILLGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SRK+R + +D +AA+ ILQ  LDR+  + SS
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157


>gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 307]
 gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 307]
          Length = 162

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    + D   +L P  P+A +DLGTK IG+A+SD G   A P   + R K    AL L 
Sbjct: 1   MIFEDVIDFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
              +   IA  ++GLP NM+GSEGPR  STRAF  N+  R   +P  +WDERL+TV+A++
Sbjct: 61  EITSHRAIAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLTDLPITYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D++AA++ILQ +LDR+  +++ 
Sbjct: 120 ALLEADTSRKRRAEVIDNVAASIILQGMLDRLRNIKAQ 157


>gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius
           nubinhibens ISM]
 gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius
           nubinhibens ISM]
          Length = 158

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            E   + L     +  +DLGTK +G+A+SD  R  A P   + R+K T  A  L   I  
Sbjct: 6   FESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQELIAA 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            ++   ++GLP NM+GSEGPR  STRAF  N   +   +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RSVVGVVLGLPRNMDGSEGPRCQSTRAFARNFA-QLTDLPIGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           + SRK+R + +D +AA+ ILQ  LDR+  +  S
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157


>gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
 gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
          Length = 158

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     ED    L  +  +A +DLGT  IG+A+SD  R  A P   + R+K T  A  L 
Sbjct: 1   MICATPEDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
              T   IA  ++GLP NM+GSEGPR  +TRAF  N+ ++   +P  FWDERL+TV+A++
Sbjct: 61  EITTHRMIAGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            +++ ++SRK+R +++D+IAA+ ILQ +LDR+  LE+  
Sbjct: 120 AMLEADMSRKRRAERIDNIAASYILQGMLDRLRHLEARA 158


>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3]
 gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
 gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3]
          Length = 154

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +E+   +L P   +A +DLG K IG+A+SD  R  A P   + RKK    A  LL
Sbjct: 1   MICETVEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +    IA  ++GLP NM+GSEGPR  STRAF  N+  R   V   FWDERL+TV+A++
Sbjct: 61  AIVEQREIAGIVLGLPRNMDGSEGPRCQSTRAFARNL-SRLTEVAITFWDERLSTVAAEK 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L++ + +RK+R + +D +AAA ILQ  LDR+  L
Sbjct: 120 ALLEADTTRKRRSEVIDHVAAAYILQGALDRLRNL 154


>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
 gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
          Length = 159

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD  RRFA PRP + R K T+ A  LL
Sbjct: 1   MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E ++AFIIGLP+NM+GS GPR  +TRAFV  M   K  +PF+FWDERL+TV+A++
Sbjct: 61  AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +L++M+VSR KR +++DS AA+ ILQ  LDR+S L  + G
Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159


>gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
 gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
          Length = 160

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 1   MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
           MS+L  IE+   +L   + +A +D G K IG+A+SD  R  A P   + R K T  A  L
Sbjct: 1   MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              IT   IA  I+GLP NM+GSEGPR  +TRAF  N+  R   +P  FWDERL+TV+A 
Sbjct: 61  AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFARNL-SRLTPLPIGFWDERLSTVAAT 119

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + L++ + SRK+R + +D +AA  ILQ VLDR++ +    G
Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160


>gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
 gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
          Length = 157

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE+  +++     +A +D G K IG+AISD     A P   + RKK T  A  L 
Sbjct: 1   MICETIEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                  I   ++GLP NM+GSEGPR   TRAF  N+ ++   +P  FWDERL+TV+A++
Sbjct: 61  EITKAREIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-EKLTELPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D +AA+ ILQ  LDR+  ++  
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHMKDG 157


>gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase
 gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
           17025]
          Length = 160

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE+ + +L  +  +  +DLGTK IG+A++D  RR A P   + R K T+ A  L 
Sbjct: 1   MIHESIEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +      +   ++GLP NM+GSEGPR  STRAF  N+  + + +P  +WDERL+TV+A++
Sbjct: 61  AITAERGLVGIVLGLPRNMDGSEGPRAQSTRAFARNL-SQVLPLPIGYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            LI+ + SRK+R + +D +AA  ILQ VLDR+ +L   +
Sbjct: 120 ALIEADTSRKRRAEVIDHVAAGYILQGVLDRLDWLGRER 158


>gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
 gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
          Length = 161

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I D   +L P Q +  +DLG K IG+A++D     A P   + RKK    A  L 
Sbjct: 1   MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLT 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I    I   I+GLP NM+GSEGPR  STRAF  N  D+ V +P  FWDERL+TV+A++
Sbjct: 61  QIIADRRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEK 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++ + SRK+R + +D +AA+ ILQ VLDR+S L +  G
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159


>gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
           DFL-11]
 gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
           DFL-11]
          Length = 161

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
             L +ED + ++     +  +DLGTK IGLA+SD GR  A P   + RKK T  A +LL 
Sbjct: 5   PTLSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLK 64

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
               + +   ++GLPLNM+G+EGPRV +TRAF  N+  +   +P  FWDERL+T +  + 
Sbjct: 65  ICNEQGVGGLVLGLPLNMDGTEGPRVQATRAFTRNLAPK-TDLPMTFWDERLSTAAVTRT 123

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           L++ + SR KR + VD +AAA ILQ  LDR+ F+
Sbjct: 124 LLEADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157


>gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 158

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I +   ++     +A +DLGT  IG+A+SD     A P   + RKK +  A  LL
Sbjct: 1   MIFNDITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                  +   ++GLP NM+GSEGPR  STRAF  N+ ++   +P  FWDERL+TV+A++
Sbjct: 61  EIAKDRELGGLVLGLPYNMDGSEGPRCQSTRAFARNL-EKLTDLPISFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + +RK+R + +D +AA  ILQ VLDR + L +S
Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157


>gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae
           WSM419]
 gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase
 gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419]
          Length = 165

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/159 (54%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR  + R K    A  LL
Sbjct: 1   MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +AAF+IGLP+NM+GSEGPR  +TRAFV  M +R   +P V WDERL+TV+A++
Sbjct: 61  FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           +LI+M+VSRKKR  ++DS AA+ ILQ  LDR++ L    
Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALLARGA 158


>gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 238]
 gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter
           antarcticus 238]
          Length = 158

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    + D   +L    P+A +DLGTK IG+A+ D G   A P   + R K    A  L 
Sbjct: 1   MIFEDVIDFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                  +A  ++GLP NM+GSEGPR  STRAF  N+  R   +P  +WDERL+TV+A++
Sbjct: 61  EITAHREVAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLSDLPITYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D+IAA++ILQ +LDR+  ++++
Sbjct: 120 ALLEADTSRKRRAEVIDNIAASIILQGLLDRLRNIKAA 157


>gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58]
 gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
 gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 159

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD  RRFA PRP + R K TQ A  LL
Sbjct: 1   MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +F   E +AAF+IGLP+NM+GS GPR  +TRAFV  M   K  +PF++WDERL+TV+A++
Sbjct: 61  AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            L++M+VSR KR +++DS AA+ ILQ  LDR+S L  + 
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAA 158


>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
 gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
           100599]
          Length = 138

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G K IG+A+SD     A     + R+   +    L   ++   I AF++GLP 
Sbjct: 3   RLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    +AF   +++ +  +P   WDERLTT++A+++LI  +VSR+KR   +D
Sbjct: 63  NMNGTIGPRAEMCQAFG-KLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVID 121

Query: 138 SIAAALILQEVLDRIS 153
            +AA LILQ  LD  S
Sbjct: 122 KMAATLILQGYLDAKS 137


>gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
           bacterium KLH11]
 gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
           bacterium KLH11]
          Length = 154

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 1/150 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
            ED   +L P   +  +DLG K IG+A+SD  R  A P   + RKK T  +  L+  +T 
Sbjct: 6   FEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLIEIVTD 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I   ++GLP NM+GSEGPR  STRAF  N+  R   V   FWDERL+TV+A++ L++ 
Sbjct: 66  REIGGIVLGLPRNMDGSEGPRCQSTRAFARNLT-RLTEVQIGFWDERLSTVAAEKALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + +RK+R Q +D +AA  ILQ  LDR+ FL
Sbjct: 125 DTTRKRRGQVIDHVAAGYILQGALDRLRFL 154


>gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
 gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
          Length = 157

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M      D + +L P Q +  +DLG K IG+A+SD  +  A P   + RKK    A  L 
Sbjct: 1   MIFDDTADFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLA 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I    I   ++GLP NM+GSEGPR  STRAF  N  DR   +P  +WDERL+TV+A++
Sbjct: 61  EIIAKRRIGGLVLGLPRNMDGSEGPRCQSTRAFARNF-DRLTPLPITYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ + +RK+R + +D +AA  ILQ +LDR+  +  
Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGLLDRLQVMRR 156


>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
 gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
 gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
          Length = 159

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I +++  L P Q IA +DLGTK IG+A+SD G  F++PR  L R+K T  A  L+
Sbjct: 1   MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLPLNMNGS GPR  +TR FV NM +    +PFVFWDERL+T++A++
Sbjct: 61  KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR  ++DS AAA ILQ  L+RI  L   +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159


>gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
 gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
          Length = 161

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +E+   +L P + IA +D G K IG+A+SD     A P   + R+K  Q A  L 
Sbjct: 1   MIHETVEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALS 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSA 118
           + +    I   ++GLP NM+GSEGPR  STRAF  N+  R     +P  FWDERL+TV+A
Sbjct: 61  ALLAARTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAA 120

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           ++ L++ + SR++R + +D +AA  ILQ  LDR+  L+ +
Sbjct: 121 ERALLEADTSRRRRAEVIDHVAAGYILQGALDRLRHLKGA 160


>gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
 gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
          Length = 159

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M ++ I +++  L P Q IA +DLGTK IG+AISD G   ++PRP L RKK T+ A  L+
Sbjct: 1   MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLPLNMNGS G RV +TRAFV NM      +PFVFWDERL+T++A++
Sbjct: 61  KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++MNVSR KR  ++DS AAA ILQ  L+RI      +G
Sbjct: 120 SLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159


>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
 gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
          Length = 160

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +  I     +L   + I  +DLGTK IG+A+SD     A P   + R K T  A  LL
Sbjct: 1   MILEEIAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    +   I+GLP NM+GSEGPR  STRAF  N+  R   VP  +WDERL+TV+A++
Sbjct: 61  QIVAGREVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTEVPIGYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ + +RK+R+Q +D+IAAA ILQ VLDR+  + +
Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156


>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 138

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D G +RIG+A+SD     A     + R+K       +   +    +   ++GLP 
Sbjct: 2   KIMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR     AF  ++   K+ +P   WDERLTTVSAQ+ L+D +VSRKKR   VD
Sbjct: 62  NMNGTIGPRGEICMAFAEDL-RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA+LILQ  LD  S
Sbjct: 121 KMAASLILQNYLDSKS 136


>gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           WS8N]
 gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase
 gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase
 gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
           17029]
 gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           WS8N]
          Length = 160

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IED + SL     +A +DLGTK +G+A+SD  RR A P   + R K T+ A +L +    
Sbjct: 6   IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIAAE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N++ + + +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + SRK+R + +D +AA  ILQ VLDR+ +L    G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159


>gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476]
 gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase
 gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476]
          Length = 156

 Score =  195 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I +++  L P Q IA +DLGTK IG+AISD G   ++PRP L RKK T+ A  L+
Sbjct: 1   MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   +IGLPLNMNGS G RV +TRAFV NM      +PFVFWDERL+T++A++
Sbjct: 61  KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++MNVSR KR +++DS AAA ILQ  L+RI  L S
Sbjct: 120 SLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156


>gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
 gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
          Length = 161

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I D   +L P Q +  +DLG K IG+A+SD     A P   + RKK    A  L 
Sbjct: 1   MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLS 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I    I   ++GLP NM+GSEG R  STRAF  N  DR   +P  FWDERL+TV+A++
Sbjct: 61  EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SR++R + +D +AA  ILQ VLDR+  +++ 
Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157


>gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
           KD131]
 gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase
 gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
          Length = 160

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           IED + SL     +A +DLGTK +G+A+SD  RR A P   + R K T+ A +L +    
Sbjct: 6   IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIADE 65

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             +   ++GLP NM+GSEGPR  STRAF  N++ + + +P  FWDERL+TV+A++ L++ 
Sbjct: 66  RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + SRK+R + +D +AA  ILQ VLDR+ +L    G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159


>gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
 gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
          Length = 161

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I D   +L P Q +  +DLG K IG+A+SD     A P   + RKK    A  L 
Sbjct: 1   MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLS 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I    I   ++GLP NM+GSEG R  STRAF  N  DR   +P  FWDERL+TV+A++
Sbjct: 61  EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SR++R + +D +AA  ILQ VLDR+  +++ 
Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157


>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
 gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
 gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 188

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I  + +L  SL  N  +  +DLG K IGLA+SDPG   A P   + R K TQ A EL 
Sbjct: 1   MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTV 116
             +   ++ A ++GLP+NM+G+EGPR  S R F   ++ R           FWDERL+T 
Sbjct: 61  RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           + ++++I  +++RK+R + VD +AAA ILQ  LDR+   +++ G
Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164


>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
 gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
 gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
          Length = 159

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I +++  L P Q IA +DLG K IG+A+SD G  F++PR  L RKK+T  A  L+
Sbjct: 1   MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLPLNMNGS GPR  +TR FV+NM +    +PFVFWDERL+T++A++
Sbjct: 61  QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR  ++DS AAA ILQ  L+RI  L   +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159


>gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
 gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
          Length = 157

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     ED   +L  +  +  +DLGT+ IG+A+SD  R  A P   + RKK    A  LL
Sbjct: 1   MICDSAEDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +      I   ++GLP NM+GSEGPR  STR F  N+ +R   +P  FWDERL+TV+A++
Sbjct: 61  AICEHRAITGIVLGLPRNMDGSEGPRCQSTRGFARNL-ERLTPLPIAFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            L++ + SR++R + +D +AA +ILQ +LDR+  L 
Sbjct: 120 ALLEADTSRRRRGEVIDHVAAGVILQGMLDRLRHLR 155


>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
           USDA 110]
 gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
          Length = 167

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + D          +  +DLGTK IG+A+S+P RR A     + RK   Q A  LL+ 
Sbjct: 11  ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 70

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                +  F++GLP+NM+GSEGPR  STRAF  N+ +    +P   WDERL+T + ++ L
Sbjct: 71  AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 129

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           I M+VSR KR + +D  AA  ILQ  LDR++ L +  G
Sbjct: 130 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167


>gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
          Length = 161

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + D          +  +DLGTK IG+A+S+P RR A     + RK   Q A  LL+ 
Sbjct: 5   ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                +  F++GLP+NM+GSEGPR  STRAF  N+ +    +P   WDERL+T + ++ L
Sbjct: 65  AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           I M+VSR KR + +D  AA  ILQ  LDR++ L +  G
Sbjct: 124 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161


>gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
 gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
          Length = 158

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     E  V ++     +A +DLGT  IG+A+SD  R  A P   + RKK    A +LL
Sbjct: 1   MICDTPETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
              T   +   ++GLP NM+GSEGPR  +TRAF  N+ ++   +P  FWDERL+TV+A++
Sbjct: 61  ELTTHRLVTGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++ + SRK+R + +D +AA  ILQ +LDR++ L+++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157


>gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
 gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
          Length = 160

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I     +L   + I  +DLGTK IG+A+SD     A P   + R K T+ A  L 
Sbjct: 1   MIFEEIAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +T  ++   I+GLP NM+GSEGPR  STRAF  N+  R    P  +WDERL+TV+A++
Sbjct: 61  DIMTGRDVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTDAPIGYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            L++ + +RK+R+Q +D+IAAA ILQ VLDR+S + +
Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156


>gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 140

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G++ IG+A SD     A     + R  +      L   I+   +   ++G+P 
Sbjct: 2   RIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  FV  M    + +P  FWDERL+TV A++ LI  +VSRKKR   +D
Sbjct: 62  NMNGTKGERAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVID 120

Query: 138 SIAAALILQEVLDRISFLES 157
            +AA +ILQ  LDR+ F +S
Sbjct: 121 KMAAVVILQGYLDRLQFSKS 140


>gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
 gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
          Length = 163

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +    D + +L P + +  +DLGT+ IG+A+SD     A P   + R+K T  A  L+
Sbjct: 1   MILEDTADFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
              +   +   ++GLP NM+GSEGPR  STRAF  N+       +P  FWDERL+TV+A+
Sbjct: 61  EIASERRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLEKTIGSDLPITFWDERLSTVAAE 120

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           + L++ + SRK+R + +D +AA  ILQ  LDRI  + + +
Sbjct: 121 RALLEADTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160


>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
 gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
          Length = 139

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 53/134 (39%), Positives = 73/134 (54%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G K IG+AISD     A     + R  + +    L   I   +I   ++GLP NM
Sbjct: 5   MGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ GP+      F   +  R   V  V WDERLTTV+A++ LI+ +VSRKKR + +D +
Sbjct: 65  NGTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEVIDKM 124

Query: 140 AAALILQEVLDRIS 153
           AA  ILQ  LD  S
Sbjct: 125 AAVYILQGYLDSAS 138


>gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
           WSM2075]
 gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
           WSM2075]
          Length = 168

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ IE L   L   + +A +DLG K IG+A+SD G  FAHPRP ++R+K +  A  LL
Sbjct: 1   MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  EN  A +IGLP+NM+GSEGPR   +RAFV NM  +   +PFVFWDERL+TV+A++
Sbjct: 61  ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI+M+ SR KR  K+DS AAA ILQ VLDR+  L +S
Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157


>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
           39073]
 gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
 gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
           39073]
          Length = 140

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+GTK IG+A+SDP    A     + R+ +      L   +    +   ++GLP 
Sbjct: 2   RIMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS GP+  + RAF  ++   +V +P  F+DERLTTV+A ++L++ ++SR++R Q +D
Sbjct: 62  NMNGSLGPQAEAVRAFARHL-QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVID 120

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  LDR+
Sbjct: 121 QVAATYILQGYLDRL 135


>gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114]
 gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase
 gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 163

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +    D + +L   + +  +DLGT+ IG+A+SD     A P   + R+K T  A  L 
Sbjct: 1   MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLS 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
             +    +   ++GLP NM+GSEGPR  STRAF  N+       +P  FWDERL+TV+A+
Sbjct: 61  DIVAQRRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAE 120

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           + L++ + SRK+R + +D +AAA ILQ  LDRI  + + +
Sbjct: 121 RALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160


>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp.
           ORS278]
 gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
 gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278]
          Length = 161

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            IL + +          +  +DLGTK IG+A+SDP RR A     + RK     A  LL+
Sbjct: 4   PILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                 +  F++GLP+NM+GSEGPR  STRAF  N+      +P   WDERL+T + ++ 
Sbjct: 64  ICAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAG-LTDLPIGLWDERLSTAAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           LI M+VSR KR + +D+ AA  ILQ  LDR++ L  S
Sbjct: 123 LIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRS 159


>gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisA53]
 gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase
 gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisA53]
          Length = 163

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 1/159 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            IL + +      P   +  +DLGTK IG+A+SDP RR A     ++RK  T  A  LL+
Sbjct: 4   PILPLIEAAAQWPPTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
             T       ++GLP+NM+ SEGPR  STRAF  N+  R   +P   WDERL+T + ++ 
Sbjct: 64  LATERKAVGLVLGLPINMDASEGPRAQSTRAFARNLA-RLTELPIGLWDERLSTAAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           LI  +VSR KR + +D  AA  ILQ  LDR++ L  S G
Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLAVLNRSTG 161


>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
 gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
 gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
 gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
          Length = 138

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+A+SDP    A     + RK       EL +     N+   + GLP 
Sbjct: 2   RILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F   +I  K+ +P   WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD IS
Sbjct: 121 KMAAIYILQGYLDSIS 136


>gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 136

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G + IG+A+SD     A     + RKK  +    +   I    ++  ++GLP NM
Sbjct: 4   MGLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLPKNM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ GPR    + F   ++ R+  +P   WDERLTTVSA + L++ +VSRKKR Q VD +
Sbjct: 64  NGTIGPRGELCQEFAG-LLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVVDKM 122

Query: 140 AAALILQEVLDR 151
           AAALILQ  +D 
Sbjct: 123 AAALILQGYMDS 134


>gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 140

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G++ IG+A SD     A     + R  +      L   I+   +   ++G+P 
Sbjct: 2   RIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  FV  M    + +P  FWDERL+TV A++ LI  +VSRKKR   +D
Sbjct: 62  NMNGTKGDRAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVID 120

Query: 138 SIAAALILQEVLDRISFLES 157
            +AA +ILQ  LDR+ F +S
Sbjct: 121 KMAAVVILQGYLDRLQFSKS 140


>gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C]
          Length = 163

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I ++   L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A IIGLPLNMNGS GPRV +T+ FV NM      +PFVFWDERL+T++A++
Sbjct: 61  QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           +L++M++SR KR  ++DS AAA ILQ  LDRI  L+S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157


>gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
           str. JGS1495]
 gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
           str. JGS1495]
          Length = 137

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G+K IG+A+SDP    A     + R   T+    ++       +   ++G+P 
Sbjct: 2   RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP     +      I++       FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            IAA  ILQ  LDRIS
Sbjct: 121 KIAATYILQGYLDRIS 136


>gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
 gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
          Length = 165

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS++ IE+  ++LK  +P+A +DLGTK IG+A+SD   RFA+PR  L RKK TQ A  L 
Sbjct: 1   MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + ++A ++GLPLNM+GS GPR  +T+AF  N        P + WDERL+TV+A++
Sbjct: 61  AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNYA-ALDERPILLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L+D+++SRKKR +++DS AAA+ILQ VLDR++ L    G
Sbjct: 120 NLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159


>gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
           HTCC2150]
          Length = 156

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 2/156 (1%)

Query: 1   MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
           M+I+    +   SLK   PI ++D G K IG+A SD  R  A P   + R K T  A  L
Sbjct: 1   MAIIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERL 60

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
           L       +  F++GLP NM+GSEG R   TRAF  N+ +R   +   FWDERL+TV+A+
Sbjct: 61  LELAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFARNL-ERLTEINIAFWDERLSTVAAE 119

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + LI+ + SR KR Q +D +AA  ILQ  LDR++ L
Sbjct: 120 RALIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155


>gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498]
          Length = 163

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I +++  L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A IIGLPLNMNGS GPRV +T+ FV NM      +PFVFWDERL+T++A++
Sbjct: 61  QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           +L++M++SR KR  ++DS AAA ILQ  LDRI  L S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157


>gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 168

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I+ IE+L   L   + +A +DLG K IG+A+SD    FAHPRP ++R+K +  A  LL
Sbjct: 1   MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  EN  A +IGLP+NM+GSEGPR   +RAFV NM  +   +PFV WDERL+TV+A++
Sbjct: 61  ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QMSDLPFVLWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            LI+M+ SR+KR  K+DS AAA ILQ VLDR+  L +S 
Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHASA 158


>gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
 gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
 gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 139

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I S+D+G++ IG+A SD     A     + R  + +    L   I    +   ++G+P 
Sbjct: 2   RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  FV  M    + +P  +WDERL+TV A++ LI  +VSRKKR   +D
Sbjct: 62  NMNGTKGERAEKTEEFVEKM-KEVIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVID 120

Query: 138 SIAAALILQEVLDRISF 154
            +AA +ILQ  LDR+ F
Sbjct: 121 KMAAVVILQGYLDRLQF 137


>gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
 gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
          Length = 204

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 1/158 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            IL + D      P   +  +DLGTK IG+A+SDP RR A     + RK  T+ A ELL 
Sbjct: 46  PILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLK 105

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                  A F++GLP+NM+GSEGPR  STRAF  N       +    WDERL+T + ++ 
Sbjct: 106 ISGERACAGFVLGLPINMDGSEGPRAQSTRAFARNFAK-LTELAIGLWDERLSTAAVERE 164

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           L+  +VSR +R + +D  AA  ILQ  LDR++ L    
Sbjct: 165 LLANDVSRARRAEVIDEHAAIFILQGALDRLTALRRQA 202


>gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13]
 gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 162

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR +++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157


>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
 gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
          Length = 142

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 79/137 (57%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I S+D+G++ IG+A+SD     A     +      +  + L       N+  F+IG+PL
Sbjct: 2   RIMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  F   +      +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +D
Sbjct: 62  NMNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVID 121

Query: 138 SIAAALILQEVLDRISF 154
            +AA +IL+  L  +SF
Sbjct: 122 KMAAVVILEGYLQHLSF 138


>gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2]
          Length = 162

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR +++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157


>gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330]
 gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365]
 gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445]
 gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC
           23457]
 gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str.
           513]
 gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str.
           686]
 gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
           B2/94]
 gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
 gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
           M292/94/1]
 gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33]
 gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3
           str. Ether]
 gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1]
 gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94]
 gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
 gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99]
 gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
           str. 40]
 gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
 gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
 gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase
 gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase
 gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase
 gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase
 gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330]
 gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365]
 gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445]
 gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
 gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
 gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
           str. 40]
 gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
 gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
 gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
 gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
 gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis
           M5-90]
          Length = 162

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157


>gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
 gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
          Length = 165

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ IE++   L+P + IA +DLGTK IGLA+SD G  FAHPRP + R K +  A  LL
Sbjct: 1   MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +  + +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR +++DS AAA ILQ  LDR+  +  S
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157


>gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
           DS-1]
 gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
           DS-1]
          Length = 182

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
            + +L   L  N+ +  +DLG+K IGLA+SD     A P   + R K T  A  L++   
Sbjct: 33  PLAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIALAK 92

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
             +  A + GLPLNM+G+EGPR  STRAF+ N+ ++   +P  FWDERL+T++  + L+D
Sbjct: 93  EHDAGALVFGLPLNMDGTEGPRCQSTRAFIRNL-EKLTDLPIAFWDERLSTMAVTRTLLD 151

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            + SR +R + VD +AAA ILQ  LDR+  L
Sbjct: 152 ADASRARRAELVDKMAAAYILQGALDRLRKL 182


>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
 gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
          Length = 138

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK IG+A+SDP    A       RKK    +    ++  +  E     ++GL
Sbjct: 2   KIIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP     +AF  ++      +P + WDERLTT +A++ LI  +VSRKKR   
Sbjct: 62  PKNMNGTIGPSGELCQAFAESL-KEATGLPVILWDERLTTAAAEKTLISADVSRKKRKNV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ  LD  S
Sbjct: 121 IDKMAAVFILQGYLDSRS 138


>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
 gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
 gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
          Length = 161

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            IL + +          +  +DLGTK IG+A+SDP RR A     + RK     A  LL+
Sbjct: 4   PILPLIEAASRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
             +   +  F++GLP+NM+GSEGPR  STRAF  N+ +    +P   WDERL+T + ++ 
Sbjct: 64  ISSERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTDLPIGLWDERLSTAAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           LI M+VSR +R + +D+ AA  ILQ  LDR++ L  S
Sbjct: 123 LIGMDVSRARRAEVIDTHAAIFILQGALDRLATLRRS 159


>gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
 gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745]
 gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
 gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745]
          Length = 139

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I S+D+G++ IG+A SD     A     + R  + +    L   I+   +   ++G+P 
Sbjct: 2   RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  FV  M    + +P  +WDERL+TV A++ LI  +VSRKKR   +D
Sbjct: 62  NMNGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVID 120

Query: 138 SIAAALILQEVLDRISF 154
            +AA +ILQ  LDR+ F
Sbjct: 121 KMAAVVILQGYLDRLQF 137


>gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
          Length = 160

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +++   ++ P + +  +DLGTK IG+A+SD     A     + RKK    A  L 
Sbjct: 1   MIFETLDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALA 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSA 118
             I    +   I+GLP NM+GSEGPR  +TRAF  N+  R    ++   FWDERL+TV+A
Sbjct: 61  GLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAA 120

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           ++ LI  + SRK+R + +D++AA+ ILQ  LDR+  L +
Sbjct: 121 ERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159


>gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
           acetobutylicum EA 2018]
          Length = 135

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID+G K IG+A+SDP    A     + RK   +   EL        +   + GLP 
Sbjct: 2   RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +      F   +I + + VP   WDERLTTV+A + +++ ++SRKKR + VD
Sbjct: 62  NMNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVD 120

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  LD I
Sbjct: 121 KVAATYILQGYLDSI 135


>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
           555]
 gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
 gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
 gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
 gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
           555]
 gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 137

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+A+SDP    A     + RK   +   EL +      +   + GLP 
Sbjct: 2   RILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  N+I+  + +P   WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLKFC-NIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LDRIS
Sbjct: 121 KMAATYILQGYLDRIS 136


>gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
           17100]
          Length = 156

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           ++ + DL+  LK ++ +  +D+GTK +GLA+SD  R+ A P   + R K T  A++LL+ 
Sbjct: 5   LVPLPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVKLLAH 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
              + +   ++GLP+N++G+EGPR  STRAFV ++      +P  FWDERL+T +A+++L
Sbjct: 65  CKAQGVGGLVVGLPVNLDGTEGPRAQSTRAFVRSL-GALTDMPMAFWDERLSTAAAERVL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
           ++ + SRK+R + +D +AAA ILQ  LDR+++
Sbjct: 124 LEADASRKRRAEVIDKMAAAYILQGALDRVNY 155


>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
 gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 139

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP 
Sbjct: 2   RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMNG+ GP+      FV ++      +P + WDERLTTV AQ++LI+  ++SR KR + +
Sbjct: 62  NMNGTLGPQGQKVMRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LD 
Sbjct: 121 DKLAAVLILQNYLDS 135


>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
 gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
          Length = 146

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SDP    A     + RK   K+ +T   + + I    +   ++G
Sbjct: 4   RIMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MN   G R   + AF   M+ R+  +  V WDERLTTV A++ LI+  V R+ R +
Sbjct: 64  LPKHMNNDIGDRAEKSMAFGE-MLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 122

Query: 135 KVDSIAAALILQEVLDRISF 154
            +D IAA  ILQ  LD ++ 
Sbjct: 123 YIDKIAAVFILQGYLDSLAH 142


>gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73]
 gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73]
          Length = 164

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I ++   L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A +IGLP+NM+GS GPRV +T+ FV NM      +PFVFWDERL+T +A++
Sbjct: 61  KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNMA-MYTKIPFVFWDERLSTTAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L+++++SR KR  ++DS AAA ILQ  LDRI  L S+
Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157


>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
           acetobutylicum ATCC 824]
 gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
 gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
           acetobutylicum ATCC 824]
          Length = 135

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID+G K IG+A+SDP    A     + RK   +   EL        +   + GLP 
Sbjct: 2   RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +      F   +I + + VP   WDERLTTV+A + +++ ++SRKKR + VD
Sbjct: 62  NMNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVD 120

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  L+ I
Sbjct: 121 KVAATYILQGYLNSI 135


>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
 gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
           743B]
 gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
          Length = 135

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G K IG+A+SDP    A     + RK +      ++++     +   ++GLP 
Sbjct: 2   RVLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+     AFV  +  +   +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVMAFVEKL-KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVD 120

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  LD I
Sbjct: 121 KVAATYILQGYLDSI 135


>gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
 gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
          Length = 168

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           S+L + +          +  +DLGTK IG+A+SDP RR A     L RK  T  A  LL+
Sbjct: 9   SVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLA 68

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                N A F++GLP+NM+GSEGPR  STRAF  N+  R   +    WDERL+TV+ ++ 
Sbjct: 69  IAGERNAAGFVLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERE 127

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           LI M++SR KR + +D  AA  ILQ  LDR++ L  +
Sbjct: 128 LIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 164


>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
 gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
          Length = 175

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K  G+A+SDP    A     +VRK   K+ QT   +   I    I A ++G
Sbjct: 37  RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 96

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   T +F   M++R+   P + WDERLTT++A+++L++  V R+ R  
Sbjct: 97  YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 155

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AAALILQ  LD   
Sbjct: 156 VIDKVAAALILQGYLDSQR 174


>gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens
           str. 13]
 gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens
           ATCC 13124]
 gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens
           SM101]
 gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
           str. JGS1987]
 gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
           str. ATCC 3626]
 gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           CPE str. F4969]
 gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           NCTC 8239]
 gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
           str. JGS1721]
 gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase
 gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase
 gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase
 gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           ATCC 13124]
 gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           SM101]
 gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
           str. JGS1987]
 gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
           str. ATCC 3626]
 gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           CPE str. F4969]
 gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
           str. JGS1721]
 gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
           NCTC 8239]
          Length = 137

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G+K IG+A+SDP    A     + R   T+    ++       +   + G+P 
Sbjct: 2   RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP     +      I++       FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            IAA  ILQ  LDRIS
Sbjct: 121 KIAATYILQGYLDRIS 136


>gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
 gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
          Length = 185

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           ++  + ++  +L     +  +DLGTK IG+A  DP RR A     + R K TQ A  L+ 
Sbjct: 31  TVGPLAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMV 90

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
             +     AF++GLPLNM+GSEGPRV ++RAF  N   R   +P  FWDERL+TV+ ++ 
Sbjct: 91  LASERKAVAFVLGLPLNMDGSEGPRVQASRAFARNFA-RLSGLPIAFWDERLSTVAVERA 149

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           LI  +VSR KR   +D  AAA ILQ  +D ++
Sbjct: 150 LISADVSRAKRANVIDQHAAAFILQGAIDFLN 181


>gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
          Length = 163

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           S+L + +          +  +DLGTK IG+A+SDP RR A     L RK  T  A  LL+
Sbjct: 4   SVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                N A F++GLP+NM+GSEGPR  STRAF  N+  R   +    WDERL+TV+ ++ 
Sbjct: 64  IAGERNAAGFVLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           LI M++SR KR + +D  AA  ILQ  LDR++ L  +
Sbjct: 123 LIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 159


>gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
 gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
          Length = 156

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           +    L   + +  +DLGTK IG+A+SD     A PR  + RKK       L +   + +
Sbjct: 9   EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               I+GLP+NM+GSEGPR  +TRAF  N+  R   +P  FWDERL++V+A++ +++ ++
Sbjct: 69  TGGIILGLPMNMDGSEGPRCQATRAFARNLSSR-CDIPITFWDERLSSVAAERAMLEADM 127

Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
           SR KR   +D +AA+ ILQ  LDRI
Sbjct: 128 SRAKRADNIDHVAASFILQGALDRI 152


>gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3]
          Length = 163

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I ++   L   Q IAS+DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+ A I+GLP+NMNGS GPRV +T+ FV NM      +PF+FWDERL+T++A++
Sbjct: 61  EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNMAT-YTKIPFIFWDERLSTIAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
             ++MN+SR KR  ++DS AAA ILQ  LDRI  L+S+
Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157


>gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 163

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL I +L  +L  +  +  +DLGTK IGLA+SD     A P   + R K T+ A  L 
Sbjct: 1   MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +     A  ++GLP+ M+G+EG R  STRAF  N++  +  +P VFWDERL+T +  +
Sbjct: 61  AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLGLR-DLPIVFWDERLSTAAVTR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            L++ + SR +R + VD +AAA ILQ  LD
Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALD 149


>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
 gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
          Length = 139

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP 
Sbjct: 2   RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMNG+ GP+      FV ++  +   +P + WDERLTTV A+++LI+  ++SR KR + +
Sbjct: 62  NMNGTLGPQGQKVVRFVEHL-KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LD 
Sbjct: 121 DKLAAVLILQNYLDS 135


>gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1]
 gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1]
 gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 162

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FA+PRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157


>gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
           str. 16M]
 gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840]
 gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
 gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase
 gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase
 gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840]
 gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
 gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 162

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+ ++
Sbjct: 61  KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157


>gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1
           str. 9-941]
 gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
 gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6
           str. 870]
 gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3
           str. Tulya]
 gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4
           str. 292]
 gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9
           str. C68]
 gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
           8038]
 gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
 gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
 gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
           Tulya]
 gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
 gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase
 gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase
 gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase
 gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1
           str. 9-941]
 gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold
           containing [Brucella melitensis biovar Abortus 2308]
 gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
 gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
           8038]
 gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
 gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
 gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
           Tulya]
 gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
          Length = 162

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157


>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
           200]
          Length = 139

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP 
Sbjct: 2   RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMNG+ GP+      FV ++    + +P + WDERLTTV A+++LI+  ++SR KR + +
Sbjct: 62  NMNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LD 
Sbjct: 121 DKLAAVLILQNYLDS 135


>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
 gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
          Length = 140

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             I  +D+G K IG+A+SD     A     + R        E+   I  + +   + GLP
Sbjct: 4   GRIMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP+    + F   +I  +  +   FWDERLTTV+A++ LI  +VSRKKR   +
Sbjct: 64  KNMNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVI 122

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 123 DMMAAVLILQGYLD 136


>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
           Holliday junction resolvase in Mycoplasmas and B.
           subtilis) [Magnetospirillum magnetotacticum MS-1]
          Length = 159

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 96/153 (62%), Gaps = 1/153 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL   +L+ SL  +Q +  +DLG+K IGLA+SD  R  A P   + R K T+ A +LL
Sbjct: 5   MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  +++   ++GLP+ M+G EGPR  S R+F  N+   +  +P  +WDERL+T +  +
Sbjct: 65  AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 123

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            L++ + SRK+R + VD +AAA ILQ +LD  S
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156


>gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae
           DFL 12]
 gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12]
          Length = 163

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +      +   + +  +DLGT  IG+A+SD     A P   + RKK    A  L 
Sbjct: 3   MIFDDLAAFRAVVPAGRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLE 62

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +   ++   I+GLP NM+GSEGPR  STRAF  N   R+  +P  FWDERL+TV+A++
Sbjct: 63  ALMDARDVGGLILGLPRNMDGSEGPRAQSTRAFARNFTARRP-IPIAFWDERLSTVAAER 121

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            L++ + SR +R + +D +AA+ ILQ  LDR   +    
Sbjct: 122 ALLEADTSRARRAEVIDHVAASYILQGALDRFGHMRREA 160


>gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 135

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+A+SDP    A     + RK V +   EL        +   I GLP 
Sbjct: 2   RILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +      F  +++  K+ +P   WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62  NMNGTVGEQGEKVIEFC-DILKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  LD I
Sbjct: 121 KMAATYILQGYLDSI 135


>gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase
 gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 149

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+A+SD     A     + R ++      L   + T  +   + GLP 
Sbjct: 2   RIMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    R F  +++++K+ +P  +WDERLTTV+AQ+ LI  ++SR KR Q VD
Sbjct: 62  NMNGTYGPRAEGIRKFG-SLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVVD 120

Query: 138 SIAAALILQEVLDRISFLESSK 159
            +AA LILQ  +D  + L + +
Sbjct: 121 KLAAVLILQNYMDAKAHLAAKE 142


>gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
 gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
 gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
 gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
          Length = 136

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G++ IG+A SD     A     + R  + +    L   I+   +   ++G+P NM
Sbjct: 1   MSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG++G R   T  FV  M    + +P  +WDERL+TV A++ LI  +VSRKKR   +D +
Sbjct: 61  NGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKM 119

Query: 140 AAALILQEVLDRISF 154
           AA +ILQ  LDR+ F
Sbjct: 120 AAVVILQGYLDRLQF 134


>gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
 gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase
 gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
          Length = 160

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            IL + +          +  +DLGTK IG+A+SDP R+ A     + R   T  A  +L+
Sbjct: 4   PILPLIEAAAHWPARGALLGLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                +   F++GLPLNM+GSEGPR  STRAF  N   R   +P   WDERL+T + ++ 
Sbjct: 64  LAAERSACGFVLGLPLNMDGSEGPRAQSTRAFARNFA-RLTELPIGLWDERLSTAAVERA 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           LI  +VSR KR + +D  AA  ILQ  LDR+  L  +
Sbjct: 123 LIANDVSRAKRAKIIDEHAAIYILQGALDRLVALNRA 159


>gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
 gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
          Length = 137

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +D G +RIG+AISD     A     + R++       + + +    +   ++GL
Sbjct: 1   MKKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR      F + + +  + +P   WDERL+TVSA++ L++ +VSRKKR Q 
Sbjct: 61  PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AA+LILQ  LD   
Sbjct: 120 VDKMAASLILQNYLDSKR 137


>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 150

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
           N  I  +D G+K +G+A+ DP    A     + RK   K+ QT   + + I    I   +
Sbjct: 2   NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMN + G R   T  F  ++ +R+  +P V WDERLTTV+A ++LI+  V R+ R
Sbjct: 62  LGYPKNMNNTLGERAVKTEEFKTSL-ERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120

Query: 133 IQKVDSIAAALILQEVLDRIS 153
            + VD IAAA+ILQ  LD +S
Sbjct: 121 KESVDQIAAAMILQGYLDSLS 141


>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SS3/4]
          Length = 144

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SD     A     + RK   K+ +T   +   I    +   ++G
Sbjct: 2   RILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NM+ +EG RV  T+AF   M++R+  +P  +WDERLTTV+A+QIL++  V R+ R  
Sbjct: 62  LPKNMDNTEGERVEKTKAFGE-MLERRTGLPVHYWDERLTTVAAEQILMESGVRRENRKA 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 121 VIDKVAAGLILQGYLD 136


>gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT]
 gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase
 gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT]
          Length = 135

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G + IG+A+SDP    A     + RK V +   EL        +   I GLP 
Sbjct: 2   RVLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +      F   ++  ++ +P   WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62  NMNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  LD I
Sbjct: 121 KMAATYILQGYLDSI 135


>gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
 gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase
 gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
          Length = 165

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ IE++   L+  Q IA +DLGTK IGLA+SD G  FAHPRP + R K +  A  LL
Sbjct: 1   MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +  + +   +IGLP+NM+G+ GPRV +TRAFV  M      +PFVFWDERL+TV+A++
Sbjct: 61  KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            LI M+VSR KR  ++DS AA+ ILQ  LDR+  +  S 
Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRSA 158


>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 151

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+AISDP    A     + RK   K+ +T   + + +    +   ++G
Sbjct: 2   RIMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   +  F   M++R+  +P   WDERLTTV A++ LI+ NV R+ R +
Sbjct: 62  FPKNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKK 120

Query: 135 KVDSIAAALILQEVLDRISFLESS 158
            VD IAA  ILQ  LD + F + S
Sbjct: 121 YVDKIAAVFILQGYLDSVYFRQKS 144


>gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
 gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
          Length = 137

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +D G +RIG+AISD     A     + R++     + + + +    +   ++GL
Sbjct: 1   MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR      F + + +  + +P   WDERL+TVSA++ L++ +VSRKKR Q 
Sbjct: 61  PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AA+LILQ  LD   
Sbjct: 120 VDKMAASLILQNYLDSKR 137


>gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
 gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase
 gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
          Length = 160

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + +          +  +DLGTK IG+A+SDP RR A     + RK  T  A  LL+ 
Sbjct: 5   ILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLAL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
               N   F++GLPLNM+GSEGPRV STRAF  N   R   +P   WDERL+T + ++ L
Sbjct: 65  AAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNFA-RLTELPIGLWDERLSTAAVEREL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           I  +VSR KR + +D  AA  ILQ  LDR++ L  +
Sbjct: 124 IANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRA 159


>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
           16795]
 gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
           16795]
          Length = 141

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  I  +D+G K IG+A+SD     A     + R+   +   EL + I    +   + GL
Sbjct: 3   DGRIMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP+          +I  +  +   FWDERLTTV+A++ LI+ +VSRKKR + 
Sbjct: 63  PKNMNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKV 121

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  S
Sbjct: 122 IDMLAAVIILQGYLDSKS 139


>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
          Length = 138

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISD     A     +   +  +      L   I        ++GL
Sbjct: 2   RILGLDVGSKTVGVAISDEMGWTAQGLETIKIDEAIKNLGFKRLKQIIAEYKPEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNGS GPR  +++ +   M+  K  +P ++WDERL+TV+A++IL+  +VSRKKR Q 
Sbjct: 62  PKNMNGSIGPRGEASKHYGE-MLTAKTGLPVIYWDERLSTVAAERILLSADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGYLDS 136


>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
 gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
 gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
          Length = 140

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D G +RIG+AISD     A  +  ++RK   +    +   I    +   I+G+P 
Sbjct: 2   RIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS GPR   TR F+ + + + +  P   WDERL+TV A+++LI+ +VSRKKR   +D
Sbjct: 62  NMDGSLGPRAEKTRDFI-DFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVID 120

Query: 138 SIAAALILQEVLDRISFLE 156
            +AA++ILQ  L+  + L 
Sbjct: 121 KVAASIILQGYLNYQNKLH 139


>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
           574]
 gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
           574]
          Length = 140

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLP 76
            +  +D+G K IG+A+SDP    A     + R   + +    L   +    +   ++GLP
Sbjct: 2   RVMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP+     AF+  + +R + +P   WDERL+TV+A++ L++ +VSR KR + +
Sbjct: 62  KNMNGTLGPQGEKVLAFIERLKER-INLPVKTWDERLSTVAAERALLEADVSRSKRKKVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AAA+ILQ  LD 
Sbjct: 121 DKMAAAVILQGYLDS 135


>gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
 gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
          Length = 137

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +D G +RIG+AISD     A     + R++       + + +    +   ++GL
Sbjct: 1   MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR      F + + +  + +P   WDERL+TVSA++ L++ +VSRKKR Q 
Sbjct: 61  PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AA+LILQ  LD   
Sbjct: 120 VDKMAASLILQNYLDSKR 137


>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
           QCD-23m63]
 gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP08]
 gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP07]
 gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP08]
 gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Clostridium difficile NAP07]
          Length = 141

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  I  +D+G K IG+A+SD     A     + R    +   EL + I  + +   + GL
Sbjct: 3   DGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP+      F   ++  +  +   FWDERL+TV+A++ L++ +VSR+KR + 
Sbjct: 63  PKNMNGTLGPQGEKVIKFCE-LVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDMLAAVIILQGYLD 136


>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
           BAA-613]
          Length = 171

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
           N  I  +D G+K +G+A+ DP    A     + R    K+ QT   +   I    I   +
Sbjct: 30  NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMN + G R   T+ F   + +R+  +  + WDERLTTV+A+++LI+  V R+ R
Sbjct: 90  LGYPKNMNNTVGERGEKTQEFKAAL-ERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148

Query: 133 IQKVDSIAAALILQEVLDRISF 154
            + VD IAAA+ILQ  LD + +
Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170


>gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
 gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
          Length = 165

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + +      P   +  +DLGTK IG+A+SDP RR A     + RK  T+ A ELL  
Sbjct: 10  ILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAELLRI 69

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                 + F++GLP+NM+GSEGPR  STRAF  N   +   +    WDERL+T + ++ L
Sbjct: 70  AGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAVEREL 128

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           I  +VSR +R + +D  AA  ILQ  LDR++ L   
Sbjct: 129 IANDVSRARRAEVIDEHAAIFILQGALDRLAALSRQ 164


>gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 139

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP 
Sbjct: 2   RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NM+G+ GP+      FV ++      +P + WDERLTTV AQ++LI+  ++SR KR + +
Sbjct: 62  NMSGTLGPQGQKVVRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LD 
Sbjct: 121 DKLAAVLILQNYLDS 135


>gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 138

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G+K IG+AISDP    A     + R K  Q   E+       ++   +IGLP 
Sbjct: 2   RILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G            +I     +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGESGERVLELSE-IIKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKIVD 120

Query: 138 SIAAALILQEVLDRISF 154
            IAA  ILQ  LDR+S 
Sbjct: 121 KIAATYILQGYLDRLSM 137


>gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510]
 gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510]
          Length = 178

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 5/156 (3%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           I  +EDL   L  NQ +  +D+GTK +GLA++DPG   A P   L R K TQ A EL   
Sbjct: 2   IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSA 118
           I    I   ++GLPLNM+GSEGPR  S RAF +N+++R   +       FWDERL+T + 
Sbjct: 62  IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121

Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           ++ +I + +++RK+R + VD +AAA ILQ  LD ++
Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLA 157


>gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630]
 gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
           QCD-66c26]
 gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
           107932]
 gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
           QCD-63q42]
 gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
           43255]
 gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
           QCD-76w55]
 gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
           QCD-97b34]
 gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
           QCD-37x79]
 gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196]
 gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291]
 gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
           QCD-32g58]
 gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
 gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile]
 gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
 gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
          Length = 141

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  I  +D+G K IG+A+SD     A     + R    +   EL + I  + +   + GL
Sbjct: 3   DGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP+      F   ++  +  +   FWDERL+TV+A++ L++ +VSR+KR + 
Sbjct: 63  PKNMNGTLGPQGEKVIKFCE-LVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKV 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 122 IDMLAAVIILQGYLD 136


>gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 4b H7858]
 gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459]
 gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL J1-175]
 gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase
 gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase
 gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           1816]
          Length = 138

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + 
Sbjct: 62  PKNMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138


>gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           EGD-e]
 gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland
           1988]
 gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL
           R2-561]
 gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           10403S]
 gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           J0161]
 gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL F2-515]
 gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
 gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase
 gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e]
 gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
           F2-208]
 gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
          Length = 138

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + 
Sbjct: 62  PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138


>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
 gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
          Length = 138

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D G +RIG+A+SD     A     + R+       ++ + +    +   ++GLP 
Sbjct: 2   KVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR      F + +    + +P   WDERLTT SA++ L++ +VSRKKR Q VD
Sbjct: 62  NMNGTVGPRGEICIEFANRL-KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA+LILQ  LD  S
Sbjct: 121 KLAASLILQNYLDAHS 136


>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 139

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP 
Sbjct: 2   RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMNG+ GP+      FV ++  +   +P + WDERLTTV A+++LI+  ++SR KR + +
Sbjct: 62  NMNGTLGPQGQKVVRFVEHL-KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LD 
Sbjct: 121 DKLAAILILQNYLDS 135


>gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 140

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT---QTALELLSFITTENIAAFIIG 74
            +  +D G+K +G+AISDP    A     + RK+     QT   +   ++  ++   ++G
Sbjct: 2   RVLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   +  F   M++R+  +  + WDERLTTV A + L++ +V R+ R Q
Sbjct: 62  YPKNMNNTIGERAQKSLEF-KEMLERRTGLEVIMWDERLTTVEANRTLMEASVRRENRKQ 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ  LD +S
Sbjct: 121 YLDQLAAVFILQGYLDSLS 139


>gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
           YK9]
 gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
           YK9]
          Length = 138

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D G + IG+A+SD     A     + R+       E+   +    +   ++GLP 
Sbjct: 2   RIMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS GPR     AF   +  +K+ +P   WDERLTTVSA++ L++ +VSRKKR   VD
Sbjct: 62  NMNGSVGPRGEICIAFAEEL-QQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD  +
Sbjct: 121 KLAATFILQNYLDSKA 136


>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
           35185]
 gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
 gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
           35185]
 gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
          Length = 149

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 73/139 (52%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + ++D+G + IG+A SD     A     + RK   +    L   +       FI+GL
Sbjct: 2   RKRVLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG++G R    R F   +  +      VFWDERL+TV+A++ LI  +VSR KR + 
Sbjct: 62  PKNMNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKV 121

Query: 136 VDSIAAALILQEVLDRISF 154
           +D +AA  ILQ  LD +  
Sbjct: 122 IDKMAAVFILQGYLDNLGM 140


>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 140

 Score =  185 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +DLG K IG+AISDP    A     + R    +   +L        +   +IGL
Sbjct: 1   MKRILGLDLGQKTIGVAISDPLGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP      AF   +++ +  +   FWDERLTTV+A + +++ ++SR KR + 
Sbjct: 61  PKNMNGTIGPSGEIAMAFG-KLLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKI 119

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +A+  ILQ  LD IS
Sbjct: 120 VDKVASTYILQGYLDMIS 137


>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
           saccharolyticum K10]
          Length = 140

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K  G+A+SDP    A     +VRK   K+ QT   +   I    I A ++G
Sbjct: 2   RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   T +F   M++R+   P + WDERLTT++A+++L++  V R+ R  
Sbjct: 62  YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AAALILQ  LD   
Sbjct: 121 VIDKVAAALILQGYLDSQR 139


>gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa
           SC2]
 gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
           SC2]
          Length = 138

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D G +RIG+A+SD     A     + R+       ++ + +    I   ++GLP 
Sbjct: 2   KVMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR      F + +    + +P   WDERLTT SA++ L++ +VSRKKR Q VD
Sbjct: 62  NMNGTVGPRGEICIEFANRL-KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA+LILQ  LD  S
Sbjct: 121 KLAASLILQNYLDAHS 136


>gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
 gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
          Length = 160

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + +    L     +  +DLGTK IG+A SDP RR A     + RK+ T  A  +LS 
Sbjct: 5   ILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGRVLSL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                    ++GLP+NM+GSEGPR  ++RAF  N+  R   +P + WDERL+T + ++ +
Sbjct: 65  AAARGAVGLVLGLPVNMDGSEGPRAQASRAFARNL-SRLTELPIMLWDERLSTAAVERDM 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           I  ++SR +R + VD  AAA ILQ  LDR+ F+   +
Sbjct: 124 IATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160


>gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase
          Length = 155

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL   +L+ SL  +Q +  +DLG+K IGLA+SD  R  A P   + R K TQ A  LL
Sbjct: 1   MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + +   ++GLP+ M+G EGPR  S R+F  N+   +  +P  +WDERL+T +  +
Sbjct: 61  AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            L++ + SRK+R + VD +AAA ILQ +LD  S
Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 152


>gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua
           Clip11262]
 gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase
 gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262]
 gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
 gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
          Length = 138

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + 
Sbjct: 62  PKNMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138


>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
           QYMF]
 gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
           QYMF]
          Length = 138

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+AISD     A     + R  + +    L   I    +   ++GLP 
Sbjct: 3   RIIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      FV  + +++  +  V WDERL+TV+A++ LI  +VSRKKR Q +D
Sbjct: 63  NMNGTIGPQGEKVLLFVERL-EKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQVID 121

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD IS
Sbjct: 122 KLAAVHILQGYLDSIS 137


>gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
 gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
          Length = 138

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + 
Sbjct: 62  PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138


>gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
           N1-067]
 gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL
           S4-171]
          Length = 138

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + 
Sbjct: 62  PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138


>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 135

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+A+SDP    A     + RK++ +   E+        I   I GLP 
Sbjct: 2   RILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +      F  +++  K+ +P   WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62  NMNGTIGEQGEKVLEFC-DVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRI 152
            IAA  ILQ  LD I
Sbjct: 121 KIAATYILQGYLDSI 135


>gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
           14579]
 gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264]
 gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185]
 gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
 gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
 gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
 gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550]
 gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase
 gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase
 gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264]
 gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550]
 gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
 gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
 gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
 gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185]
 gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 137

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LDR
Sbjct: 121 IDKMAAVVILQGFLDR 136


>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
           2522]
 gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
           2522]
          Length = 142

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGL 75
            +  +D+GT  IG+AISD     A     + R  +   Q    L   I  ++++  ++GL
Sbjct: 2   KVLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP     +AF   + +R   +    WDERLTTV+A+++L+  +VSRKKR + 
Sbjct: 62  PKNMNGTIGPSGELCQAFAEKLKER-TNLKVELWDERLTTVAAEKMLVSADVSRKKRKKV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LDR
Sbjct: 121 IDKMAAVMILQGYLDR 136


>gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
 gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
          Length = 159

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L + DL  +  P+ P   +DLG K IG+A+SD  R  A P   + + K T  A +L 
Sbjct: 1   MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    ++A +IGLP NM+G+EGPR  S RAF  N+ +R   V   FWDERL+T + ++
Sbjct: 61  KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFARNL-ERLRPVNIAFWDERLSTSAVER 119

Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            LI+ ++++RK+R Q VD  AAA ILQ  LDR+ 
Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRVR 153


>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 140

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             I  +D+G   IG+A+SD     A     + R+   +    +   I  +N+   + GLP
Sbjct: 4   GRIMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP+      F   +I  +  +   FWDERLTTVSA+++LI  +VSRK R + +
Sbjct: 64  KNMNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVI 122

Query: 137 DSIAAALILQEVLDRISF 154
           D +AA LILQ  LD   F
Sbjct: 123 DKLAAVLILQNYLDFKKF 140


>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
           X514]
 gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
 gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
 gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
 gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
 gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
 gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
          Length = 139

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+AISD     A     + R    +    +   I    +   I+GLP 
Sbjct: 2   RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           N+NG+ GP+      FV ++    + +P + WDERLTTV A+++LI+  ++SR KR + +
Sbjct: 62  NLNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LD 
Sbjct: 121 DKLAAVLILQNYLDS 135


>gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum
           AMB-1]
 gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum
           AMB-1]
          Length = 159

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M IL   +L+ SL  +Q +  +DLG+K IGLA+SD  R  A P   + R K TQ A  LL
Sbjct: 5   MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + +   ++GLP+ M+G EGPR  S R+F  N+   +  +P  +WDERL+T +  +
Sbjct: 65  AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 123

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            L++ + SRK+R + VD +AAA ILQ +LD  S
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156


>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
 gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 145

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFI 72
            +  I  +D GTK +G+A+SD     A     +   +         L   I    +   +
Sbjct: 4   RHMRILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIV 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMNG+ GPR  +T+ F    + +   +P V WDERL+T++A+++LI  +VSRKKR
Sbjct: 64  VGFPKNMNGTIGPRGEATQRFAEQ-VKQTFSLPVVLWDERLSTMAAERMLIAADVSRKKR 122

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA +ILQ  LD
Sbjct: 123 KKVIDKMAAVMILQSYLD 140


>gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
           G9241]
 gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
 gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
 gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676]
 gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
 gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W]
 gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
 gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           BMB171]
 gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
           G9241]
 gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
 gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
 gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W]
 gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
 gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676]
 gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
 gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           BMB171]
 gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 137

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
           ZC1]
 gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
           ZC1]
          Length = 138

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SD     A     +   +         +   +    I  F++G 
Sbjct: 2   RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  ++  +   +++    +P   WDERLTT++A+++LI+ +VSRKKR Q 
Sbjct: 62  PKNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKMAAVMILQGYLDSKN 138


>gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
 gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271]
 gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603]
 gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
 gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621]
 gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3]
 gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase
 gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis
           KBAB4]
 gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3]
 gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621]
 gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
 gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603]
 gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271]
 gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
          Length = 137

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+A+SD     A     +    ++       +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRN-LLQLEVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
 gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
 gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
           M50/1]
          Length = 144

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SD     A     + R+   K+ QT   + + I    +   ++G
Sbjct: 2   RILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN +EG R   T+ F   M++R+  +  + WDERLTTVSA + +++  + R+ R +
Sbjct: 62  YPKNMNNTEGERCEKTKEF-QEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKK 120

Query: 135 KVDSIAAALILQEVLDRISF 154
            VD IAA  ILQ  LD  S 
Sbjct: 121 YVDEIAAVFILQGYLDYRSM 140


>gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 148

 Score =  183 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
             +D G+K +G+AISDP    A     + RK   K+ +T   + + +    +   ++G P
Sbjct: 1   MGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMN + G R   +  F   M++R+  +P   WDERLTTV A++ LI+ NV R+ R + V
Sbjct: 61  KNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYV 119

Query: 137 DSIAAALILQEVLDRISFLESS 158
           D IAA  ILQ  LD + F + S
Sbjct: 120 DKIAAVFILQGYLDSVYFRQKS 141


>gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
 gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
          Length = 135

 Score =  183 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+A+SDP    A     + RK++ +   E+        I   I GLP 
Sbjct: 2   RILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +      F   + D+ + +P   WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62  NMNGTIGEQGEKVLEFCDVLKDK-LDIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRI 152
            IAA  ILQ  LD I
Sbjct: 121 KIAATYILQGYLDSI 135


>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
           1_2_62CV]
 gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
           1_2_62CV]
          Length = 139

 Score =  183 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +    +K       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I++  ++P  + DERLTTV+A+++LI+  +VSRKKR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAK-IEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
 gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
          Length = 165

 Score =  183 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAF 71
            N  I  +D GTK +G+A+SD     A P   + RK   K+ QT   + S I        
Sbjct: 19  KNMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERI 78

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G P NMN + G R  +T  F  ++ +R+  +  + WDERL+TV A++IL+D  V R+ 
Sbjct: 79  VLGYPKNMNNTIGERAEATEQFKEDL-ERRTGLEVILWDERLSTVEAERILMDTGVRREN 137

Query: 132 RIQKVDSIAAALILQEVLDRISF 154
           R Q VD +AAA+ILQ  LD  + 
Sbjct: 138 RKQYVDKMAAAVILQNYLDSQAH 160


>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
           DSM 17678]
 gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
           DSM 17678]
          Length = 138

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  I  +D+G   IG+A+SD     A     + R         L   I    +   + GL
Sbjct: 3   SGRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP+      F  ++I  ++ +   FWDERLTTVSA+++LI+ +V RK R + 
Sbjct: 63  PKNMNGTIGPQAEKVIKFC-DLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKV 121

Query: 136 VDSIAAALILQEVLDRI 152
           +D +AA LILQ  LD I
Sbjct: 122 IDKLAAVLILQGYLDSI 138


>gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
 gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
          Length = 156

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L IED   +L    P+  +D G K IG+A+SD  R  A P   + + K ++ A  L 
Sbjct: 1   MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +      +IGLP+NM+G+EG R  S RA   N++  K  +P  FWDERL+T +  +
Sbjct: 61  KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LI + +V+RK+R + VD +AA  ILQ  L+R+  L
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156


>gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum
           HLK1]
 gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase
 gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum
           HLK1]
          Length = 156

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ + DL     PN P+  +DLG K IG+A+SD  R  A P   + + K T  A  L 
Sbjct: 1   MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +   +  +IGLP+NM+G+EG R  S RAF  N++  +  +P  FWDER++T++  +
Sbjct: 61  KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +L+ + +++R +R   VD +AAA ILQ  LDR+  L
Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156


>gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
 gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
          Length = 143

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+A+SDP    A     + RK   K+ +T   + S  T   +  F+IG
Sbjct: 3   RIMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIG 62

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R      F   M+ R+  +  V WDERLTTV A++ L++  V R+ R Q
Sbjct: 63  FPKHMNNDIGERAEKALEFGE-MLKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRKQ 121

Query: 135 KVDSIAAALILQEVLDRISF 154
            VD IAA  ILQ  LD +  
Sbjct: 122 YVDQIAAVFILQGYLDSLGM 141


>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
           L2-14]
          Length = 145

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 4/145 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            +  +D GTK +G+AISDP    A     + RK   K+ +T   +   I    +   ++G
Sbjct: 2   RVMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R   +  F  +M+ R+  +  + WDERLTTV+A+Q LI+  V R+ R Q
Sbjct: 62  FPKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRKQ 120

Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
            VD IAA  ILQ  LD I   ++++
Sbjct: 121 YVDKIAAVFILQGYLDSIYMQKTAE 145


>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
           WAL-14163]
 gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
           WAL-14673]
 gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
           WAL-14163]
 gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
           WAL-14673]
          Length = 163

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 6/156 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTAL 57
           M+I  +  ++  +K    +  +D G+K  G+A+SDP    A     + R+   K+ +T  
Sbjct: 1   MAICQL--VLLWVKQLMRVLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCA 58

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
            +   I    I   ++G P NMN + G RV  T AF   M++R+  +  + WDERLTT +
Sbjct: 59  RIEELIREYQIETIVLGYPKNMNNTSGERVEKTLAF-KEMLERRTGLSVILWDERLTTTA 117

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           A+QILI+  V R+ R   +D +AA+LILQ  LD ++
Sbjct: 118 AEQILIESGVRRENRKAVIDKVAASLILQGYLDSLA 153


>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
 gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
 gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
 gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
 gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
 gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
 gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
 gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
 gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
          Length = 137

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   ++   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LDR
Sbjct: 121 IDKMAAVVILQGFLDR 136


>gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           220]
 gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
           Scott A]
          Length = 135

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61  NMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119

Query: 138 SIAAALILQEVLDRIS 153
            +AA +ILQ  LD  +
Sbjct: 120 KLAAVMILQSYLDTTN 135


>gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
 gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
          Length = 157

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
            IE++ + L     +  +DLGTK IGLA+SD  RR A P   + R K +Q A  LL    
Sbjct: 7   PIEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQ 66

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
             ++ A + GLPLNM+G+ GPR  +TRAF+ N+  +   +PFVFWDERL+T +  + LI 
Sbjct: 67  DFDVQALVFGLPLNMDGTAGPRAQATRAFMRNL-RKLTPIPFVFWDERLSTAAVTRELIA 125

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            + SR KR + VD +AAA ILQ  LDR+S L
Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSRL 156


>gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
 gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
          Length = 176

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            I  + D+   L P   +  +DLGTK IG+A  DP RR A     + R K T  A  LL+
Sbjct: 9   PIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLA 68

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                    F++GLPLNM+ SEGPR  ++RAF  N+  R   +P   WDERL+T + ++ 
Sbjct: 69  LAAERRAVGFVLGLPLNMDASEGPRAQASRAFARNLA-RLTALPIALWDERLSTAAVERA 127

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVL 149
           LI  +VSR +R   VD  AAA IL+  L
Sbjct: 128 LISADVSRARRAAVVDQHAAAFILEGAL 155


>gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
           15053]
 gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
           15053]
          Length = 145

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G K +G+A+SDP    A     + RK   K+ QT   +   I    +   ++G
Sbjct: 4   RIMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MN   G R   +  F   M+ R+  +  V WDERLTTV A++ LI+  V R+ R +
Sbjct: 64  LPKHMNNDIGDRAEQSLEFGE-MLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 122

Query: 135 KVDSIAAALILQEVLDRI 152
            +D IAA  ILQ  LD I
Sbjct: 123 YIDKIAAVFILQGYLDSI 140


>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
           16841]
 gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
           16841]
          Length = 145

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 4/145 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SD     A     + R+   K+ Q+   +   I   N+   ++G
Sbjct: 2   RILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN +EG R   T+ F   M++R+  +  + WDERLTTVSA + +++  + R+ R +
Sbjct: 62  YPKNMNNTEGERCEKTKEF-KEMLERRTGLNVILWDERLTTVSADKHMMESGIRREDRKK 120

Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
            VD IAA  ILQ  LD ++     K
Sbjct: 121 FVDEIAAVFILQGYLDYLAMHPEEK 145


>gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
 gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
          Length = 162

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   IE++   LKP Q +A +DLGTK IGLA+SD G  FAHPRP + R K T  A  LL
Sbjct: 1   MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+ +   +IGLP+N +G+ GPRV +TRAFV  M      + FVFWDERL+TV+A++
Sbjct: 61  KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            LI M+VSR KR  ++DS AAA ILQ  LDR+  +  +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157


>gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293]
 gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293]
          Length = 137

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   ++   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
 gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
           8052]
          Length = 138

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLG+K IG+A+SDP    A     + R    +   E+  F    +    +IGLP 
Sbjct: 2   RILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP      AF   +I+ ++ V   FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPSGEIAMAFG-KVIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +A+  ILQ  LD IS
Sbjct: 121 KVASTYILQGYLDMIS 136


>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
           F0211]
 gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
           F0211]
          Length = 139

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +    +K       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I++  ++P  + DERLTTV+A+++LI+  +VSRKKR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGTK-IEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23]
 gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
 gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
 gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
 gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
 gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
 gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
          Length = 135

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61  NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119

Query: 138 SIAAALILQEVLDRIS 153
            +AA +ILQ  LD  +
Sbjct: 120 KLAAVMILQSYLDTTN 135


>gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842]
 gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
 gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
 gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
 gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
 gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase
 gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842]
 gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
 gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
 gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
 gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
          Length = 137

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+A+SD     A     +    ++       +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
 gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
 gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
          Length = 163

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           S+L + +          +  +DLGTK IG+A+SDP RR A     + RK  T  A  LL+
Sbjct: 4   SVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                    FI+GLP+NM+GSEGPR  STRAF  N+  R        WDERL+T + ++ 
Sbjct: 64  IAGERRAEGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDFAIGLWDERLSTAAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           LI +++SR +R + +D  AA  ILQ  LDR++    + G
Sbjct: 123 LIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161


>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
           15579]
 gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
           15579]
          Length = 137

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+A+SDP    A     + RK       E+        +   + GLP 
Sbjct: 2   RILGLDIGDRTIGVALSDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  ++I   V +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLEFC-DLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 121 KMAATYILQGYLDSLS 136


>gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           flueggei ATCC 43531]
 gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           flueggei ATCC 43531]
          Length = 143

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 72/139 (51%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   S+DLG   IG+A+SD     A     + R  +      L   +    + A + GL
Sbjct: 1   MKRYMSLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R    RAF+  + +        +WDERL+TV+A + LI  +VSRKKR + 
Sbjct: 61  PKHMNGDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120

Query: 136 VDSIAAALILQEVLDRISF 154
           +D +AA  ILQ  LDR + 
Sbjct: 121 IDKMAAVYILQGFLDRQNM 139


>gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase
 gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 165

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           +L + +L   L P Q +  IDLGTK IGL++SD  RR A P   + R K T+ A  LL+ 
Sbjct: 5   VLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLAL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
               ++AAF+IGLPLNM+GS GPRV +T AFV ++       PF +WDERL+T +  + L
Sbjct: 65  ADQFDVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSG-LTSRPFCYWDERLSTAAVTRDL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           I  + SR KR   VD +AAA ILQ  LDR++++  + 
Sbjct: 124 IAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETA 160


>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Ames]
 gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
           10987]
 gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Sterne]
 gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
 gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
           Holliday junction resolvase in Mycoplasmas and B.
           subtilis) [Bacillus anthracis str. A2012]
 gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0488]
 gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0193]
 gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0174]
 gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
 gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
           NVH0597-99]
 gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
 gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
 gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
 gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           CDC 684]
 gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
 gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
 gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
 gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
 gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0248]
 gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           A1055]
 gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Kruger B]
 gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
           Australia 94]
 gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
 gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI]
 gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
 gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
 gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
 gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
 gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
 gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
 gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
 gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
 gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
 gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
 gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
           10987]
 gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           Sterne]
 gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
           resolvase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
           resolvase [Bacillus cereus E33L]
 gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0488]
 gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0193]
 gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0174]
 gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
 gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
 gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
           NVH0597-99]
 gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
 gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
 gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           CDC 684]
 gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
 gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
 gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
 gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
 gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
           A0248]
 gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
 gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 137

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   ++   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
 gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
          Length = 160

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 1/153 (0%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
            +E+L   L     +  +D+GTK IGLA+SD  RR A P   + R K T  A  L + + 
Sbjct: 7   TVEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVA 66

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
             +IAA I+GLPLNM+GSEGPR  +TRAF+ N+   +  + + FWDERL+T +  + L+ 
Sbjct: 67  QFDIAALIVGLPLNMDGSEGPRAQATRAFMRNL-GARFALRYAFWDERLSTAAVTRELLA 125

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
            + SR KR   VD +AAA ILQ  LDR+  L S
Sbjct: 126 QDASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158


>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
 gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
          Length = 166

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 1/159 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            +L + +          +  +DLGT+ IG+A+SDP RR A     + RK  T  A  LL+
Sbjct: 4   PVLPLIEAAAHWPERGALVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLA 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                +   FI+GLP+NM+GSEGPR  STRAF  N+  R   +    WDERL+T + ++ 
Sbjct: 64  IAGERHAKGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTAAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           LI +++SR +R + +D  AA  ILQ  LDR++    S G
Sbjct: 123 LIGLDMSRARRARVIDEHAAIFILQGALDRLAAQRRSSG 161


>gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
 gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
          Length = 138

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +D G + IG+A+SD     A     + +++       +   +    +   ++GLP 
Sbjct: 2   RTMGLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR   + AF   +  + + +P   WDERLTTVSA++ L++ +VSRKKR   +D
Sbjct: 62  NMNNTIGPRGEISMAFAEQL-QQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA LILQ  LD 
Sbjct: 121 KMAATLILQNYLDS 134


>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
           XB6B4]
          Length = 144

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +GLA+SD     A     + R+   K+ QT   + + I    +   ++G
Sbjct: 2   RILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN +EG R   T+ F   M++R+  +  + WDERLTTVSA + +++  + R+ R +
Sbjct: 62  YPKNMNNTEGERCEKTKEF-KEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKK 120

Query: 135 KVDSIAAALILQEVLDRISF 154
            VD IAA  ILQ  LD  S 
Sbjct: 121 YVDEIAAVFILQGYLDYRSM 140


>gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 154

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L + +L  +  PN P   +DLG   IG+++SD GR  A P   + + K +Q A +L 
Sbjct: 1   MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +    ++A +IGLPLNM+G+EGPR  S RAF  N+ +R   V   F DERL+T + ++
Sbjct: 61  RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFARNL-ERFRPVNVAFQDERLSTTAVER 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            LI +++++RK+R   VD  AAA ILQ  LDR+ 
Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRLR 153


>gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803]
 gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803]
          Length = 137

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+A+SD     A     +    ++       +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM
           13528]
 gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
           13528]
          Length = 137

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+A+SDP    A     + RK   +   EL S      +   + GLP 
Sbjct: 2   RILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +     +F   +I++ + VP   WDERLTTV+A + +I+ ++SR KR + VD
Sbjct: 62  NMNGTLGLQSEKVLSFC-KVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD IS
Sbjct: 121 KMAAIYILQGYLDSIS 136


>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
 gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
 gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 138

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+AISDP    A     + R  +     E+        +   + GLP 
Sbjct: 2   RILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  +++ +++    + WDERLTTV+A + +I+ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVTEFC-DILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVD 120

Query: 138 SIAAALILQEVLDRI 152
            IAA  ILQ  LD +
Sbjct: 121 KIAAIYILQGYLDSV 135


>gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
           12067]
 gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
           12067]
          Length = 140

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 74/135 (54%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+GT+ IG+A+SD     A+    + R    +    +   I    +   ++G P NM
Sbjct: 4   MSLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYPKNM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ G R  +  A    +      V  V WDERL+TV+A+++L+D ++ RKKR + +D +
Sbjct: 64  NGTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVIDMM 123

Query: 140 AAALILQEVLDRISF 154
           AA +ILQ  LD  SF
Sbjct: 124 AAVVILQNYLDSKSF 138


>gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 138

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K IG+AISDP    A     +   +  +      L   I    +   ++G 
Sbjct: 2   RIIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGY 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN S GPR  ++  F   ++     +P V WDERLTT +A+++LI  +VSRK R + 
Sbjct: 62  PKNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKKV 120

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 121 IDKMAAVMILQGYLD 135


>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
 gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
 gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
          Length = 137

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+A+SDP    A     + R  + +    L   I+  ++   ++G+P 
Sbjct: 2   RIMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G +     AF+   +  K+ +P   WDERL+TV+A+++LI  +VSR KR + +D
Sbjct: 62  NMNGTVGSQGEKVLAFIEK-VKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVID 120

Query: 138 SIAAALILQEVLDR 151
            +AAA+ILQ  LD 
Sbjct: 121 KMAAAVILQGYLDS 134


>gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM
           14469]
 gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM
           14469]
          Length = 161

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+AISD     A     + R    K+ QT   + + I   ++   ++G
Sbjct: 8   RIMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLG 67

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   + AF   M++R+  +P V WDERLTTV A + L++  V R+KR  
Sbjct: 68  FPKNMNNTIGERAEKSLAF-KEMLERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKD 126

Query: 135 KVDSIAAALILQEVLDRISF 154
            VD +AA  ILQ  LD ++ 
Sbjct: 127 YVDKLAAVYILQGYLDYLAM 146


>gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 135

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61  NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVID 119

Query: 138 SIAAALILQEVLDRIS 153
            +AA +ILQ  LD  +
Sbjct: 120 KLAAVMILQSYLDTTN 135


>gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273]
 gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272]
 gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272]
 gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273]
          Length = 137

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+A+SD     A     +    ++       +   +    +   ++GL
Sbjct: 2   RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGFLDS 136


>gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
           str. Hall]
 gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
           str. Langeland]
 gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
           NCTC 2916]
 gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
 gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
           str. Okra]
 gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
           str. 657]
 gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
 gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
 gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
 gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
 gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
 gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
 gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
 gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
           str. Hall]
 gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
           str. Langeland]
 gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
           str. Okra]
 gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
           str. Loch Maree]
 gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
           NCTC 2916]
 gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
 gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
           str. Kyoto]
 gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
           str. 657]
 gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
           str. 230613]
          Length = 137

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+AISDP    A     + RK       E+        +   + GLP 
Sbjct: 2   RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  ++I   + +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136


>gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 135

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61  NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119

Query: 138 SIAAALILQEVLDRIS 153
            +AA +ILQ  LD  +
Sbjct: 120 KLAAVMILQSYLDTTN 135


>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 139

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I+    +P  + DERLTTV A+++LI+  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASKAYGEK-IESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase
 gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98]
          Length = 137

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +   +  +      +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + +  ++ +  + +  + WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQRYAESLRE-LLQLEVILWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           VD +AA +ILQ  LD 
Sbjct: 121 VDKMAAVVILQGYLDS 136


>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
           20731]
 gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
           20731]
          Length = 139

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 78/134 (58%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLGT+ IG+++SD     A     + RK +      L   +  E +  F++G P 
Sbjct: 2   RIMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS G R  ++  F   + +R   +P V WDERL+TV+A+++LI+ ++ RKKR + +D
Sbjct: 62  NMNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIID 121

Query: 138 SIAAALILQEVLDR 151
            +AA +ILQ  LD 
Sbjct: 122 MMAAVVILQNYLDS 135


>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
 gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
          Length = 141

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+AISDP    A     + RK   K+ +T   + + I    +   ++G
Sbjct: 2   RIMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MN   G R   +  F   M+ R+  +  V WDERLTTV A++ LI+  V R+ R +
Sbjct: 62  LPKHMNNDIGDRAERSLEFG-KMLSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D IAA  ILQ  LD I
Sbjct: 121 YIDKIAAVFILQGYLDSI 138


>gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
 gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
          Length = 138

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+A SD     A     + R         +   +    ++  ++G P 
Sbjct: 2   RILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR   +  F   +   ++ +P   WDERLTT+ A++ L+  ++SR KR + +D
Sbjct: 62  NMNNTVGPRAKLSEEFADKL-SAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVID 120

Query: 138 SIAAALILQEVL 149
            +AA LILQ  L
Sbjct: 121 KMAAVLILQNYL 132


>gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894]
          Length = 144

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1   MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F   E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145
            L++M+VSR KR +++DS AA+ IL
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144


>gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
           065]
          Length = 137

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G + IG+AISDP    A     + RK       E+        +   + GLP 
Sbjct: 2   RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+      F  ++I   + +    WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136


>gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
 gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase
 gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
          Length = 164

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L I +   ++    PI  +D G K IG+A+SD     A P   + + K ++ A  L 
Sbjct: 1   MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +   A  +IGLP+NM+G+EG R  S RA   N++  + ++P  FWDERL+T +  +
Sbjct: 61  QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +LI + +V+RK+R + VD +AAA ILQ  L+R+  +  + G
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161


>gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7]
          Length = 155

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
            + I  +D G+K +G+A+SDP    A     + RK   K+ +T   + + I        +
Sbjct: 2   KKRIIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NMN +EG RV  T AF   + +R+  +  + WDER++TV+++++L++ NV R+ R
Sbjct: 62  LGYPKNMNDTEGERVEKTLAFKEAL-ERRTGLEVILWDERMSTVASERVLMEGNVRREDR 120

Query: 133 IQKVDSIAAALILQEVLDRISFLESSK 159
              +D +AAA ILQ  LD  SF E+  
Sbjct: 121 KTYIDKMAAAFILQGYLDYQSFSENQA 147


>gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
 gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase
 gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
          Length = 152

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M      D   +L     +A +D+GTK IG+A+ D G  FA P   +VRK+ +     L 
Sbjct: 1   MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALK 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + +   ++GLPLNM+GS+ PR  STRAF  N+    + +P + WDER +T + ++
Sbjct: 61  ALVAGQAVVGLVVGLPLNMDGSDSPRTQSTRAFARNLA--PLGLPVLLWDERWSTAAVER 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            +I  +VSR KR +++DS AAA ILQ  +D +
Sbjct: 119 AMIAADVSRAKRAERIDSAAAAFILQGAIDAM 150


>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
 gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 139

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  Q      L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I+   ++P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASKAYGDR-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 121 VIDKLAAQLILQNYLD 136


>gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
 gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
          Length = 138

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SD     A     +   +         +   +    I  F++G 
Sbjct: 2   RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  ++  +   +++    +P   WDERLTT++A+++LI+ +VSRKKR Q 
Sbjct: 62  PKNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKMAAVMILQGYLDSKN 138


>gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622]
 gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase
 gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK
           1622]
          Length = 151

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLGTK IG+A+SD     A     + R  +      L +  +   +   ++GLPL
Sbjct: 2   RTMGLDLGTKTIGVAVSDGLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEGPR  ++R F   +  + + V    WDERL+TV+A + L++ +VSR +R + +D
Sbjct: 62  NMDGSEGPRAEASRKFADTLA-QSLGVTVELWDERLSTVAATRTLLEADVSRARRREVID 120

Query: 138 SIAAALILQEVLD 150
            +AA  ILQ  LD
Sbjct: 121 QVAAQFILQGWLD 133


>gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
 gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
          Length = 137

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   N+   ++GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + +  ++ +  + +  + WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQYAESLRE-LLQLEVILWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGYLDS 136


>gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
           C19]
 gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
           C19]
          Length = 157

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I +L   L     +  +DLG K IG+A+SD     A P   + + K T  A  L 
Sbjct: 1   MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +     A  +IGLP+NM+G+EGPR  S RAF  N++  +  VP  FWDER ++ +  +
Sbjct: 61  HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLLRLR-DVPIAFWDERWSSAAMNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            LI + ++SR KR + +D  AAA ILQ  LDRI 
Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRIK 153


>gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
           345-E]
 gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Dialister micraerophilus DSM 19965]
 gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
           345-E]
 gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Dialister micraerophilus DSM 19965]
          Length = 145

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 78/137 (56%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G+  IG+AISD     A     +      +    L + I + ++   ++G+PL
Sbjct: 2   RIMALDVGSHTIGVAISDLMGWTAQGLETIRHSTREKDFERLKTIIDSYDVKEIVVGMPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R   T  FV ++      +P  FWDERLTTV AQ+ LI  ++SRKKR + +D
Sbjct: 62  NMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVID 121

Query: 138 SIAAALILQEVLDRISF 154
            +AA +IL+  L  + F
Sbjct: 122 KLAATVILEGYLRHLEF 138


>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
           A2-162]
          Length = 140

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SDP    A     + RK   K+ QT   +   I    +   ++G
Sbjct: 2   RILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R      F   M+ ++  +  + WDERLTTV A + LI+  V R+ R Q
Sbjct: 62  FPKNMNNTVGERAEKALEFGE-MLKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRKQ 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D IAA  ILQ  LD +S
Sbjct: 121 YLDGIAAVFILQGYLDSLS 139


>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SM4/1]
          Length = 140

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I   D G+K  G+A+SDP    A     +VRK   K+ QT   +   I    I A ++G
Sbjct: 2   RIMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   T +F   M++R+   P + WDERLTT++A+++L++  V R+ R  
Sbjct: 62  YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AAALILQ  LD   
Sbjct: 121 VIDKVAAALILQGYLDSQR 139


>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
           str. Eklund 17B]
 gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
 gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 137

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLG K IG+A+SDP    A     + R    +   EL        +   +IGLP 
Sbjct: 2   RILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP        +  +++  + +   FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPSGEIAME-MGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +A+  ILQ  LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136


>gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 142

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 73/140 (52%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
              S+D+G   IG+A+SD     A     + R         L + +    + A + GLP 
Sbjct: 3   RYMSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG EG R    RAF+     R   V   +WDERL+TV+A + L++ +VSRKKR + +D
Sbjct: 63  HMNGDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVID 122

Query: 138 SIAAALILQEVLDRISFLES 157
            +AA  ILQ  LDR   L +
Sbjct: 123 KMAAVYILQGFLDRQRNLHT 142


>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
 gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
 gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
          Length = 140

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
               +D+GTK IG+A+SD     A       R    +      + S +    +   +IGL
Sbjct: 2   RTLGLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+GS GP    +  F   +  R V    V WDERLTT +A+++LI  +VSRKKR   
Sbjct: 62  PKNMDGSIGPSGERSETFAAEL-RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKSV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LDR
Sbjct: 121 IDKMAAVMILQGYLDR 136


>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
 gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
 gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
          Length = 142

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+GTK IG+AISD     A   P + R      +    L   I   ++   +IG P 
Sbjct: 4   IGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPK 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G     +  F   + +++  V  V WDERLTT +AQ++LID +VSRKKR + VD
Sbjct: 64  NMNGTVGESATRSETFARTL-EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVD 122

Query: 138 SIAAALILQEVLDRISF 154
            +AA  ILQ  LDR S 
Sbjct: 123 KMAAVFILQGYLDRQSH 139


>gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15]
 gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus
           NA1000]
 gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase
 gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase
 gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus
           NA1000]
          Length = 156

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +L IED   +L     +  +D G K IG+A+SD  R  A P   + + K ++ A +L 
Sbjct: 1   MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + +    A +IGLP+NM+G+EG R  S RA   N++  K  +P  FWDERL+T +  +
Sbjct: 61  KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +LI + ++SRK+R + VD +AA  ILQ  L+R+  L
Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156


>gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
 gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
          Length = 140

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
            + +  +D+G+K IG+A+SD     A     +        +    L  FI   ++   ++
Sbjct: 1   MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVV 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G P NMNG+ GPR  ++ AF     ++   +P V  DERLTT+ A+++LI  +VSRKKR 
Sbjct: 61  GHPKNMNGTVGPRGEASEAFAEAFTEQ-TGLPCVLVDERLTTMQAERMLISADVSRKKRK 119

Query: 134 QKVDSIAAALILQEVLDR 151
             +D +AA +ILQ  LDR
Sbjct: 120 AVIDKMAAVMILQNYLDR 137


>gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisB18]
 gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase
 gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
           BisB18]
          Length = 163

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            IL + +          +  +DLGTK IG+A+SDP RR A     ++       A  LL 
Sbjct: 4   PILPLIEAAAQWPARGALIGLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLL 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                N   F++GLP+NM+GSEGPR  STRAF  N   R   +P   WDERL+T + ++ 
Sbjct: 64  LAGQRNAVGFVLGLPINMDGSEGPRAQSTRAFARNFA-RLTDLPIGLWDERLSTSAVERE 122

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           LI  +VSR KR + +D  AA  ILQ  LDR++ L ++
Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLTVLNAA 159


>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
          Length = 150

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 4/145 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            +  +D G+K +G+A+SDP    A     + RK   K+ +T   +   I+   +   ++G
Sbjct: 2   RVLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   +  F   M++++  +P V WDERLTT++A + L +  V ++ R Q
Sbjct: 62  YPKNMNNTVGERAEKSLEF-KEMLEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRKQ 120

Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
            +D +AA  ILQ  LD  ++    +
Sbjct: 121 YLDQVAAVFILQGYLDAAAYRREQQ 145


>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
 gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
 gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
 gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
 gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
 gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
          Length = 137

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+AISD     A     +    ++       +   +   N+   I+GL
Sbjct: 2   RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  + + F  ++ +  + +  + WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTIGPRGEACQQFAQSLRE-LLQLDVMMWDERLSTMAAERLLISADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQGYLDS 136


>gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           noxia ATCC 43541]
 gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
           noxia ATCC 43541]
          Length = 137

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 76/137 (55%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G   IG+A+SD     A     + R+ ++     L   I      A + GLP +M
Sbjct: 1   MSLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG EG R    RAF+ +  +R   +   +WDERL+TV+A + L++ +VSRKKR + +D +
Sbjct: 61  NGQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKM 120

Query: 140 AAALILQEVLDRISFLE 156
           AA  ILQ  LDR   L+
Sbjct: 121 AAVYILQGFLDRQQHLK 137


>gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 143

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 72/139 (51%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   S+DLG   IG+A+SD     A     + R  +      L   +    + A + GL
Sbjct: 1   MKRYMSLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R    RAF+  + +        +WDERL+TV+A + LI  +VSRKKR + 
Sbjct: 61  PKHMNGDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120

Query: 136 VDSIAAALILQEVLDRISF 154
           +D +AA  ILQ  LDR + 
Sbjct: 121 IDKMAAVYILQGFLDRQNM 139


>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
           27755]
 gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
           27755]
          Length = 144

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G++ +G+A+SDP    A     + RK   K+ +T   +   +    +   ++G
Sbjct: 2   RIMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +MN   G R   +  F   MI R+  +  V WDERLTTVSA++ LI+  V R+ R +
Sbjct: 62  LPKHMNNDIGDRAEKSMQFGE-MIGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D IAA  ILQ  LD 
Sbjct: 121 YIDQIAAVFILQGYLDS 137


>gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase
 gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination
           [Thermoanaerobacter tengcongensis MB4]
          Length = 139

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G K IG+AISD     A     + RK   +    +   +   ++   ++GLP 
Sbjct: 2   RVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
           NMNGS GP+      F   + +  + +P VFWDERLTT+ A++ LI+  ++SR KR + +
Sbjct: 62  NMNGSIGPQGEKVIKFGEKLRE-VLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI 120

Query: 137 DSIAAALILQEVLDR 151
           D +AA +ILQ  LD 
Sbjct: 121 DKLAATIILQSYLDS 135


>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
           2020]
 gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
           2020]
          Length = 139

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPRV +++A+  N+I  +  +P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNSSGPRVEASQAYG-NLIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDRI
Sbjct: 121 VIDKLAAQLILQNYLDRI 138


>gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
           10379]
 gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
           10379]
          Length = 142

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
           ++ I  +D G+K IG+A+SD     A     +   +  +      +   +   N+   ++
Sbjct: 3   DKRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA LILQ  LD+++
Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142


>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
 gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
 gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
           equi 4047]
          Length = 139

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  Q      L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I+   ++P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASKAYGDK-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 121 VIDKLAAQLILQNYLD 136


>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
 gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
 gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
          Length = 150

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+  +G+AISD  +  A     + RK   K+ QT   +   I    +   ++G
Sbjct: 2   RIMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   +  F  ++  R+  +P V WDERLTTV+A Q+L    VS KK+++
Sbjct: 62  YPKNMNNTIGERAEKSEEFAEHL-RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKME 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            VD +AA  ILQ  LD +S
Sbjct: 121 VVDKLAAVFILQGYLDYLS 139


>gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium
           HTCC2654]
          Length = 155

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 2/139 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLP 76
            +A +D G K IG+A+SD  R+ A P   + R KK TQ A  L++ +    I+  ++GLP
Sbjct: 18  ALAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLGLP 77

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NM+G+EGPR   TRAF  N+  R    P  FWDERL+TV+A++ L++ + SR KR   +
Sbjct: 78  RNMDGTEGPRCQKTRAFARNL-SRLTERPITFWDERLSTVAAERALLEADTSRAKRSGVI 136

Query: 137 DSIAAALILQEVLDRISFL 155
           D +AA  ILQ  LDR+  L
Sbjct: 137 DHVAAGYILQGALDRMRHL 155


>gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis
           KC583]
 gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase
 gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis
           KC583]
          Length = 161

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I+ I+ ++  L   Q IA +DLGTK IG+AISD    F++PRP + RKK T  AL+L+
Sbjct: 1   MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   IIGLP+NM+GS GPRV +TR FV N+      +PF+FWDERL+T++AQ+
Sbjct: 61  KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSNIA-MYTKIPFIFWDERLSTIAAQR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
            L++++VSR KR  ++DS AAA ILQ  LDRI  L  +
Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157


>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
           ATCC 700641]
 gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
           ATCC 700641]
          Length = 139

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGKRL-EELFNLPVEYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
           15264]
          Length = 173

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
            +L + DL  +  P+     +DLG   IG+A SD  R  A P   + + K T  A  L  
Sbjct: 10  PVLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFR 69

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
            +    ++A +IGLP+NM+G+EGPR  S RAF  N+ DR   V   FWDERL+T + ++ 
Sbjct: 70  LMDHRKVSALVIGLPVNMDGTEGPRAQSCRAFARNL-DRIRPVNVAFWDERLSTSAVERF 128

Query: 122 LI-DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
           LI ++++SRK+R   VD  AAA ILQ  LDR+  
Sbjct: 129 LIDELDLSRKRRAGVVDRTAAAWILQGALDRVRH 162


>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
 gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
 gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
          Length = 138

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGL 75
            +  +DLGTK +G+A+SD     A     +    ++       L   I    +   ++G 
Sbjct: 2   RVLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   +++ +  +P + WDERL+T++A+++LI  +VSRKKR Q 
Sbjct: 62  PKNMNGTVGPRAEASQRFA-KLLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVVILQSYLDS 136


>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
           str. Alaska E43]
 gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
 gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 137

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLG K IG+AISDP    A     + R    +   EL        +   +IGLP 
Sbjct: 2   RILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP        +  +++  + +   FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62  NMNGTIGPSGEIAME-MGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +A+  ILQ  LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136


>gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
 gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
          Length = 143

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            +  +D G+K +G+AISDP    A     + RK   K+ QT   +   +    +   ++G
Sbjct: 2   RVMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN + G R   +   +  M++R+  +P + WDERLTT+ A++ LI+  V R+ R +
Sbjct: 62  FPKHMNNTIGDRAEKSLE-LKAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRKK 120

Query: 135 KVDSIAAALILQEVLDRISF 154
            VD IAA  ILQ  LD I  
Sbjct: 121 YVDKIAAVFILQGYLDSIRM 140


>gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
 gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
          Length = 144

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 87/139 (62%), Gaps = 4/139 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFI 72
           PN  +  +D+G+K +G+A+SD     A     + + +K ++     ++  +    +   +
Sbjct: 2   PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKK 131
           IGLP NMN +EGPRV ++R +  ++ ++++ +P VF DERLTT+ A+++L++   VSRKK
Sbjct: 62  IGLPKNMNNTEGPRVEASRRYGASL-EKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120

Query: 132 RIQKVDSIAAALILQEVLD 150
           R Q +D +AA +ILQ  LD
Sbjct: 121 RKQVIDMLAAVMILQNYLD 139


>gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
          Length = 138

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISD     A     +   +         +   +   N+  F++G 
Sbjct: 2   RIMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGY 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  ++ ++   +++     P   WDER+TT++A+++LI+ +VSRKKR Q 
Sbjct: 62  PKNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  +
Sbjct: 121 IDKMAAVMILQGYLDSKN 138


>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
           16646]
 gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
           16646]
          Length = 145

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G KRIG+A+SD     A     + R  V +    +   +    +   IIGLPL
Sbjct: 2   RILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+    + F   +    + +   +WDERL+TV+A+++LID ++SR+KR   +D
Sbjct: 62  NMNGTLGPQGQLVKDFGEKLRH-SLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVID 120

Query: 138 SIAAALILQEVLDRISFLESS 158
            ++A +ILQ  LD  S +++ 
Sbjct: 121 KLSAIVILQSFLDSRSNIDTG 141


>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
           DSM 15981]
 gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
           DSM 15981]
          Length = 151

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+ DP    A     +VRK   K+ +T   +   I    I   ++G
Sbjct: 2   RIMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R          + +R+  +P + WDERLTTV+A ++L++  V R+ R +
Sbjct: 62  YPKNMNNTVGERAQKAEELKAAL-ERRTGLPVILWDERLTTVAADRVLMESGVRREHRKE 120

Query: 135 KVDSIAAALILQEVLDRISF 154
            VD IAAA+ILQ  LD +SF
Sbjct: 121 SVDQIAAAMILQGYLDNLSF 140


>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
           29176]
 gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
           29176]
          Length = 148

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 4/146 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+AISD  +  A     + RK   K+ +T   +   I    +   ++G
Sbjct: 2   RIMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R   +  F   M++R+  +  V WDERLTTV+A++ LI+ +V R+ R Q
Sbjct: 62  FPKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRKQ 120

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD IAA  ILQ  LD +S    + G
Sbjct: 121 YVDKIAAVFILQGYLDLLSMRNGADG 146


>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
           13479]
 gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
           13479]
          Length = 161

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 4   LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELL 60
             +  L    K    I  +D G+K +G+A+SD     A     + R+   K+ +T   + 
Sbjct: 3   FTLGTLYDVEKMRMRIMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIE 62

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I    I   ++G P NMN + G RV  T +F   M++R+  +P V WDERLTTV +++
Sbjct: 63  ELIREYEIETIVLGYPKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSER 121

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           IL +  V R+ R   +D +AA LILQ  LD + 
Sbjct: 122 ILQESGVRRENRKAVIDKVAAGLILQGYLDSLP 154


>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
 gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
 gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
 gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
          Length = 138

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            +  +D+GTK IG+A+SD     A     +    +++ Q+   L   I   ++   ++GL
Sbjct: 2   RVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +   F  N +  K+ +  + WDERL+T++A+++L+  +VSRKKR + 
Sbjct: 62  PKNMNGTIGPRGEACIEFADN-VKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD 
Sbjct: 121 IDKMAAVMILQGYLDS 136


>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
 gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
 gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
          Length = 143

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SD     A     + RK   K+ QT   +   I    +   ++G
Sbjct: 2   RILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN +EG R   T+ F  +M+ R+  +  ++WDERLTTV+A + +++  + R+ R +
Sbjct: 62  YPKNMNNTEGERCEKTKEFG-DMLARRTGLEVIYWDERLTTVAADRSMMETGIRRENRKE 120

Query: 135 KVDSIAAALILQEVLDRISFLES 157
            VD IAA  ILQ  LD +S   S
Sbjct: 121 FVDEIAAIFILQGYLDYLSNSRS 143


>gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
 gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase
 gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
          Length = 161

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  ++    +L P +P+  +DLGT+ IG+A SD     A P   + R+K T    EL 
Sbjct: 1   MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +       A  ++GLP+ M+GSEGPR  +TRAF  N++  +  +P + WDERL+T +  +
Sbjct: 61  ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALR-DLPVLLWDERLSTAAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            L+ + +++R +R + VD  AAA ILQ  LD +
Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALDAL 152


>gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus
           amyloliquefaciens FZB42]
 gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7]
 gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase
 gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42]
 gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 138

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+A+SD     A     +   +         L   +   N+   ++G 
Sbjct: 2   RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTIGPRGEASQTFA-KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138


>gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str.
           K-12 substr. MG1655]
          Length = 180

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 44  SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 103

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 104 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 162

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 163 VDSASAVIILESYFEQ 178


>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
 gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
          Length = 149

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 11/146 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITT-------EN 67
            +  +D GTK +G+A+SDP    A P   + RK   K+ QT   + + I         E 
Sbjct: 2   RVLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEK 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++G P NMN +EG R  +T +F +++ +R+  +  V WDERLTTV A++IL+D  V
Sbjct: 62  IEKIVLGYPKNMNNTEGDRCEATVSFKNDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
            R+ R   +D +AAA+ILQ  LD  S
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLDSKS 146


>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
 gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
          Length = 144

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G   IG+AISD     A       RK+       ++       +   +IGLP 
Sbjct: 2   RILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           NMNGS GP+     AF   + D     +  V WDERL+TV+AQ+ LI+ +VSR KR + +
Sbjct: 62  NMNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVI 121

Query: 137 DSIAAALILQEVLDRISFLESS 158
           D +AA  ILQ  LD +   ++ 
Sbjct: 122 DKMAAVYILQGYLDSLRITKNK 143


>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 139

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV ++RA+   + +    +P  + DERLTTV+A+++LI+  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASRAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
           771]
          Length = 139

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
            I  +DLG K IG+A+SDP    A     + RK    Q    L   I    +   ++GLP
Sbjct: 2   RIMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GP+      F+  +  RK+ +    WDERL+TV+A++IL+  ++SR KR + +
Sbjct: 62  KNMNGTTGPQAEKALDFIEYL-KRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKVI 120

Query: 137 DSIAAALILQEVLDRIS 153
           D +AAA+ILQ  LD  S
Sbjct: 121 DKMAAAVILQGYLDAHS 137


>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
 gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
 gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
          Length = 154

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLP 76
            I  +DLG K+IG+A+SDP    A     +  K   +     +   +    +   ++GLP
Sbjct: 2   RIMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNGS GPR    RAF   +    + +P   WDER+TT+ A+++LI+ ++SR +R Q +
Sbjct: 62  RNMNGSFGPRAERARAFAGCLAGA-LNLPVELWDERMTTLEAEKLLIEADLSRARRRQVI 120

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           D +AA LILQ  LD         G
Sbjct: 121 DKMAAVLILQSFLDSQGRPRREAG 144


>gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1]
          Length = 149

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTE-------N 67
            I  +D GTK +G+A+SDP +  A P   + RK   K+ QT   + + +           
Sbjct: 2   RILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQTLARIEAILEEYGAAGERDR 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++G P NMN SEG R  +T+AF  ++ +R+  +  V WDERLTTV A++IL+D  V
Sbjct: 62  IELIVLGYPKNMNNSEGDRCEATQAFKEDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
            R+ R   +D +AAA+ILQ  LD
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLD 143


>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
 gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
 gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
          Length = 139

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +   +     L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I+   ++P V+ DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGKK-IEDLFHIPVVYQDERLTTVQAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
           11563]
 gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
           11563]
          Length = 139

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
               +D+G+K +G+A+SDP    A     +   +  +      L   I    + A ++GL
Sbjct: 2   RYMGLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN S GPR  +++ +   +IDR   +P  + DERLTTV A+++LI  +VSRKKR + 
Sbjct: 62  PKNMNNSIGPRAEASQKYGQLVIDR-FDLPVFYQDERLTTVQAERMLIANDVSRKKRKKV 120

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 121 IDKLAAVLILQNYLD 135


>gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099]
 gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase
 gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099]
          Length = 166

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 1/151 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +   L   + +A +DLG K IG+A+SD G  FAHPRP ++R+K +  A  LL+ +  EN+
Sbjct: 1   MPAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENV 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A  IGLP+NM+GSEGPR   +RAFV NM  +   +PFVFWDERL+TV+A++ LI+M+ S
Sbjct: 61  GAVAIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAERTLIEMDFS 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           R KR  K+DS AAA ILQ VLDR+  L+S+ 
Sbjct: 120 RAKRAGKIDSAAAAFILQGVLDRLQSLDSAA 150


>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
 gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
          Length = 139

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIG 74
            I  +D GTK  G+AISDP    A     + R++   +  T   +    T   +   ++G
Sbjct: 2   RILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN + G R   T  F   + + K+ +P   WDERL+TV+A+Q+L++ ++SRKKR  
Sbjct: 62  LPKNMNNTLGERGEKTLLFKEKL-ENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRKN 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAATIILQNYLD 136


>gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48]
 gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48]
          Length = 167

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+IL I +L  +L P + +  +DLG K IG+A+SD       P   + + K TQ A  LL
Sbjct: 1   MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID----------RKVYVPFVFWD 110
             +     +  +IGLP+NM+G+EGPR  S RAF  N++            +  +P  FWD
Sbjct: 61  LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120

Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           ER ++    + LI + +++R KR + +D  AAA ILQ  LDRI 
Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRIR 164


>gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
 gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
          Length = 148

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
              ++D+G + IG+A+SDP    A     + R+ + +    L + I  ENI   ++GLP 
Sbjct: 10  RYMALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGLPK 69

Query: 78  NMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           NMN + GP+     +FV  +          +  V  DERLTTVSA++ILI+ N+SRKKR 
Sbjct: 70  NMNNTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKKRK 129

Query: 134 QKVDSIAAALILQEVLDR 151
           + +D +AA  ILQ  LDR
Sbjct: 130 KVIDKVAATYILQSYLDR 147


>gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
 gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
          Length = 150

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLGTK IG+A+SD     A     + R  +      L         +  ++GLPL
Sbjct: 2   RTLGLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEGPR  ++R F   +  + +++P  FWDERL+TV+A++ L++ +++R KR Q +D
Sbjct: 62  NMDGSEGPRAEASRKFADAL-GQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVID 120

Query: 138 SIAAALILQEVLD 150
            +AA  ILQ  LD
Sbjct: 121 QMAAQFILQGWLD 133


>gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51]
 gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
           hafniense DCB-2]
 gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
 gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
 gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
           DCB-2]
          Length = 142

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D G + IG+A+SD     A     + R    +   EL + +    +   ++G P 
Sbjct: 2   RIMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR  +T  F   ++  +  +P   WDERL+T+ AQ+ L++ +VSR KR Q +D
Sbjct: 60  NMNGTLGPRAQATEEFAQ-ILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVID 118

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD I 
Sbjct: 119 KMAAVFILQGYLDYIR 134


>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 139

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  Q      L   +   +++ F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I     +P V+ DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
 gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
          Length = 139

 Score =  178 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+GTK +G+A+SD     A     L R  +      L++       ++   +IGLP 
Sbjct: 4   LGLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLPK 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP       F  ++    V   FV WDERLTTV+A+++L+  +VSRKKR + +D
Sbjct: 64  NMNGTIGPSGERCMEFADSL-KEHVDCEFVMWDERLTTVAAERMLVSADVSRKKRKKVID 122

Query: 138 SIAAALILQEVLDR 151
            +AA +ILQ  LDR
Sbjct: 123 KMAAVMILQGYLDR 136


>gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 140

 Score =  178 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +         L   I    +   +IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPFGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPR  ++R +  +M      +P  + DERLTT  +++ LI+  +VSRKKR +
Sbjct: 62  PKNMNNTEGPRAEASRHYG-DMAIELFDLPVFYQDERLTTQQSERFLIEAADVSRKKRKK 120

Query: 135 KVDSIAAALILQEVLDRISF 154
            +D +AA LILQ  LD  S 
Sbjct: 121 VIDKLAAVLILQNYLDSHSH 140


>gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
 gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
          Length = 142

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
           + I  +D+G+K +G+A+SD     A     +   +         LL  +    +   +IG
Sbjct: 3   KRIMGLDVGSKTVGVAVSDLMGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVIG 62

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
           LP NMN S GPR  ++ A+   +   +  +   + DERLTT  A+++L+ + NVSRKKR 
Sbjct: 63  LPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           Q +D +AA +ILQ  LDRI+
Sbjct: 123 QVIDKLAAVIILQNYLDRIN 142


>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
           BL2]
 gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
 gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
          Length = 161

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/157 (49%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + DL   + P Q +  IDLGTK IGLA+SD  RR A P   + R K ++ A+ L+  
Sbjct: 5   ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
               +  A IIGLPLNM+GS+GPRV +TRAFV ++    V  PFV+WDERL+T +  + L
Sbjct: 65  AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVRSL-SALVSKPFVYWDERLSTAAVTRSL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           ID +VSR KR + VD +AAA ILQ VLDR+  +E+  
Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEADA 160


>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 139

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  Q      L   +    ++ F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I     +P V+ DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
 gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 139

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 138

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 75/136 (55%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLGT+ IG+A+SD     A     + R         L   +  E + AF++G P 
Sbjct: 2   RIMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G R  ++ AF   +           WDERL+TV+A+++LID +++RKKR + +D
Sbjct: 62  NMNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVID 121

Query: 138 SIAAALILQEVLDRIS 153
            +AA +ILQ  LD + 
Sbjct: 122 MMAAVVILQNYLDSLR 137


>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
 gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
          Length = 135

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 3/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+A+SD     A     +   +  +      +   I    ++  ++GLP 
Sbjct: 1   MGLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR  +++ +   + ++   +P V WDERL+T++A+++L++ +VSRKKR + +D
Sbjct: 61  NMNGTIGPRGEASQFYASEL-EKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVID 119

Query: 138 SIAAALILQEVLDR 151
            +AA +ILQ  L+ 
Sbjct: 120 KMAAVMILQGFLNS 133


>gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 136

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  Q      L   +    +  F+IGLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+    I+   ++P  + DERLTTV A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASKAYGDR-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKKVI 119

Query: 137 DSIAAALILQEVLD 150
           D +AA LILQ  LD
Sbjct: 120 DKLAAQLILQNYLD 133


>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 138

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G   IG+AISD     A P   + R+       ++   I   N+   ++GLP 
Sbjct: 3   KILGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GP+      F   + ++   V   + DER+TT+ A+Q+LI+ +V R+ R + +D
Sbjct: 63  NMNNTIGPQSEKVIKFAEKLKNK-FKVEIEYVDERMTTLMAEQVLIEGSVRRENRKKYID 121

Query: 138 SIAAALILQEVLDRIS 153
            IAA  ILQ  LDRI+
Sbjct: 122 KIAATYILQSYLDRIN 137


>gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK330]
          Length = 139

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADVSRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
           thermophilus LMG 18311]
 gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
           thermophilus CNRZ1066]
 gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
 gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
 gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
           18311]
 gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
           CNRZ1066]
          Length = 139

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+    I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGDK-IKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
 gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
          Length = 138

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISD     A     +   +  +      +        ++  ++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  S++ +   + +++V +P V WDER+TT +A++ L++ +VSR KR + 
Sbjct: 62  PKNMNNTLGPRAESSKKYAEVL-EKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKKV 120

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ  LD
Sbjct: 121 IDKLAAVMILQSYLD 135


>gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
 gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
 gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 145

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+AISD  R  A     + RK   K+ +T   +   I   ++   ++G
Sbjct: 2   RIMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R   +  F   M+ R+  +  + WDERLTTV A++ LI+ NV R+ R +
Sbjct: 62  FPKHMNNDIGERAQQSMEFGE-MLKRRTGLEVILWDERLTTVEAERTLIESNVRRENRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D IAA  ILQ  LD
Sbjct: 121 HIDQIAAVFILQGYLD 136


>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
 gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 141

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLG KRIG+A SDP    A     L RK + +    L        +   ++GLPL
Sbjct: 2   RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+   T+ F   + +  + +P  FWDERL++ SA+++L++ ++SRK+R + +D
Sbjct: 62  NMNGTMGPKALETQEFARALQEA-LKIPVDFWDERLSSKSAERVLLEADLSRKRRKELID 120

Query: 138 SIAAALILQEVLDRIS 153
            IAA  ILQ  LD  S
Sbjct: 121 KIAAVHILQAYLDGGS 136


>gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341]
 gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341]
          Length = 142

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
           ++ I  +D G+K IG+A+SD     A     +   +  +      +   +   N+   ++
Sbjct: 3   DKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA LILQ  LD+++
Sbjct: 123 DVIDKMAAVLILQTYLDKLN 142


>gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
 gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
          Length = 168

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 1/144 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +  +DLGTK IGLA+SD GRR A P   + R K T  A  L +      +   ++G 
Sbjct: 17  GRRLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRLAAIAAEHGVGGLVVGH 76

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSEGPR  STRAFV N+    + +P + +DERL+T +  + L++ + SR +R + 
Sbjct: 77  PLNMDGSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGKL 135

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           VD +AAA ILQ  LD ++ LE  +
Sbjct: 136 VDKLAAAYILQGCLDVLAGLEPEE 159


>gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
 gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
          Length = 141

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
           ++ I  +D G+K IG+A+SD     A     +   +  +      +   +   NI   ++
Sbjct: 3   DKRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDR 151
             +D +AA LILQ  LD+
Sbjct: 123 DVIDKMAAVLILQTYLDK 140


>gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus
           amyloliquefaciens TA208]
 gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens
           LL3]
          Length = 138

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+A+SD     A     +   +         L   +   N+   ++G 
Sbjct: 2   RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTIGPRGEASQTFA-KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGFLDSLN 138


>gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
 gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase
 gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
          Length = 138

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
               +DLGTK +G+A+SD     A     +   +         L + I    +   ++G 
Sbjct: 2   RTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGW 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  ++  F   + +    +P V WDERL+T++A+++LI  +VSRKKR + 
Sbjct: 62  PKNMNGTLGPRAEASERFAAKLREE-FSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AAA+ILQ  LD   
Sbjct: 121 IDKMAAAVILQSYLDSKR 138


>gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis
           m4-4]
          Length = 138

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 77/136 (56%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+GT+ +G+A+SD     A     +   +         +   +    ++  ++GL
Sbjct: 2   RIMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  +++ +   + ++   +P  ++DERLTT+ A+++LI+ +VSR KR + 
Sbjct: 62  PKNMNNTMGPRGEASQRYGEGLREK-FGIPVDYYDERLTTMQAERVLIEADVSRGKRKKV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LDR
Sbjct: 121 IDKMAAVMILQGYLDR 136


>gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5]
 gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5]
          Length = 148

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 5/146 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+AISD     A     + RK   K+ +T   +   ++   +   ++G
Sbjct: 2   RIMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R   +  F  +M+ R+  +  + WDERLTTV A++ LI+ NV R+ R +
Sbjct: 62  FPKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRKK 120

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D IAA  ILQ  LD + +L+   G
Sbjct: 121 YIDKIAAIFILQGYLDSV-YLQRQAG 145


>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
           thermophilus LMD-9]
 gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
 gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
 gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
          Length = 139

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+    I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGDK-IKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
 gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 139

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +   +         L   +    +  F++GL
Sbjct: 2   RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGKK-IKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
          Length = 147

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SDP    A     +   +  +      +   +    +A F++GL
Sbjct: 2   RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV ++  +   +  R   +P  F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62  PKNMNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQKK 121

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA  ILQ  LDR   L
Sbjct: 122 VIDEVAATFILQSYLDRHGKL 142


>gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
           ATCC 700780]
 gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
           ATCC 700780]
          Length = 136

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + +   Q     L   + +  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  +VSR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK115]
          Length = 139

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
           10507]
          Length = 152

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SDP    A     + RK   K+ QT   + + I    +   ++G
Sbjct: 2   RILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN + G R   +  F  +M+ R+  +P V WDERLTTV A + L++  V R+ R  
Sbjct: 62  LPKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRKD 120

Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
            VD +AA  ILQ  LD     +  +
Sbjct: 121 YVDELAAIFILQGYLDAQRIRKEME 145


>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
           UA159]
 gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
 gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 139

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +   +         L   +    +  F++GL
Sbjct: 2   RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+    I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGKK-IKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1056]
          Length = 139

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
 gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 138

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G K+IG+A+SD     A     + R  + +   E+   I   ++   +IG P 
Sbjct: 2   KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    + F   +      +  VFWDERL+TV A+++LI  ++SR+KR + +D
Sbjct: 62  NMNGTAGPRAELVKRFARELYK-FTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVID 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA LIL   L+  S
Sbjct: 121 KLAATLILSGYLNYKS 136


>gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
           NEM316]
 gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase
 gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase
 gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase
 gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 139

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   + +       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 15912]
          Length = 139

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   MI  K  +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGT-MIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas
           palustris CGA009]
 gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas
           palustris TIE-1]
 gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase
 gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase
 gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1]
          Length = 160

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           IL + +          +  +DLGTK IG+A SDP R+ A     + RK  T  A  LL+ 
Sbjct: 5   ILPLIEAAVHWPVRGALLGLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLLAL 64

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                   F++GLPLNM+GSEGPR  STRAF  N+  R   +P   WDERL+T + ++ L
Sbjct: 65  AAERTACGFVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTELPIGLWDERLSTAAVEREL 123

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
           I  +VSR KR + +D  AA  ILQ  LDR++ L  ++
Sbjct: 124 IANDVSRAKRAKVIDEHAAIFILQGALDRLAALRRAE 160


>gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
           F0399]
 gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
           F0399]
          Length = 138

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 73/138 (52%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G   IG+A+SD     A     + R  +      L + +    + A + GLP +M
Sbjct: 1   MSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG EG R    RAF+         V   +WDERL+TV+A + L++ +VSRKKR + +D +
Sbjct: 61  NGDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKM 120

Query: 140 AAALILQEVLDRISFLES 157
           AA  ILQ  LDR   L +
Sbjct: 121 AAVYILQGFLDRQRNLHT 138


>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
 gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
          Length = 139

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   +  +   +P  + DERLTTV+A+++LI+  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASKAYGEKIA-QLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300]
 gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300]
          Length = 139

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + +   Q     +   + +  +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera
           micronuciformis F0359]
 gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera
           micronuciformis F0359]
          Length = 138

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 66/133 (49%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G+K IG+A SD     A     L R+   +  L L      + +   ++G P 
Sbjct: 2   RILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKPS 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG +         FV  +         V+WDERLTTV AQ+ L++  V R+KR   VD
Sbjct: 62  HMNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVVD 121

Query: 138 SIAAALILQEVLD 150
           +IAA  ILQ  LD
Sbjct: 122 TIAAVFILQNYLD 134


>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
           SK36]
 gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
 gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
           SK36]
          Length = 139

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
 gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
          Length = 139

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+ +  I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGNK-IKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1087]
          Length = 139

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK405]
 gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK678]
 gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK150]
 gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1]
 gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1057]
 gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK408]
 gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1058]
          Length = 139

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           R6]
 gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           D39]
 gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
           SP9-BS68]
 gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
           SP11-BS70]
 gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
 gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
 gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           JJA]
 gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           P1031]
 gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           70585]
 gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           BS455]
 gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
           SP-BS293]
 gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
           BS397]
 gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
 gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
 gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
 gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
 gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
 gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
 gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
 gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
 gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
 gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
           D39]
 gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
 gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
 gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
 gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
 gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
 gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           BS455]
 gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
           SP-BS293]
 gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
           BS397]
 gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
          Length = 139

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK72]
 gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK49]
 gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1059]
          Length = 139

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRVSE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
           ATCC 9812]
 gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
           ATCC 9812]
          Length = 139

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +        L   +   N+  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+    I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGDQ-IKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 138

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+A+SD     A     +   +         L   I    I   ++G 
Sbjct: 2   RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   + +    VP V WDERLTT++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138


>gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103]
 gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103]
 gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
           AJ13355]
          Length = 138

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+A+       A P   +  +  T   L++   +        ++GLP
Sbjct: 4   QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     R F + +  R   +     DERL+TV A+  L +    R      V
Sbjct: 64  LNMDGTEQPLTARARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122

Query: 137 DSIAAALILQEVLD 150
           DS +AA+ILQ+  +
Sbjct: 123 DSQSAAIILQDWFE 136


>gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426]
 gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
 gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
 gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
 gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase
 gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
 gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
 gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
          Length = 138

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
               +DLGTK +G+A+SD     A     +             L + I    +   ++G 
Sbjct: 2   RTLGLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGW 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  ++  F   + +    +P V WDERL+T++A+++LI  +VSRKKR + 
Sbjct: 62  PKNMNGTLGPRAEASERFAAKLREE-FSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AAA+ILQ  LD   
Sbjct: 121 IDKMAAAVILQSYLDSKR 138


>gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 147

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SDP    A     +   +  +      +   +  E +A F++GL
Sbjct: 2   RLLGLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV +++ +   + +R   +P  F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62  PKNMNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA  ILQ  LDR   L
Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142


>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
 gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
          Length = 140

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 68/136 (50%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G K IG A+SD     A     + R         +            I+GLP 
Sbjct: 2   RILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GP+    +AF   + +    +    WDERL+TV+A++ LI  +V R KR Q +D
Sbjct: 62  NMNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVID 121

Query: 138 SIAAALILQEVLDRIS 153
            +AA  ILQ  LD +S
Sbjct: 122 KMAAVFILQGYLDSLS 137


>gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325]
 gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325]
          Length = 142

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
            + I  +D G+K IG+A+SD     A     +   +  +      +   +   N+   I+
Sbjct: 3   EKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NM+ S G R  +T  FV  +  +   V  +  DERLTT+ A+++L++ NVSRKKR 
Sbjct: 63  GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA LILQ  LD+++
Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142


>gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK353]
          Length = 139

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +     K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK160]
          Length = 139

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +     K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143]
 gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143]
          Length = 139

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + +   Q     +   + +  +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
           F0405]
 gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
           F0405]
          Length = 139

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   MI  K  +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGT-MIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34]
 gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 139

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +        L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+    I+    +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGDK-INELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 179

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
             ++L     +A +D+GTK IGLA+ D     A P   + RKK T     L  F+  + +
Sbjct: 35  FQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQV 94

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              +IGLPLN++GS+ PR  S RAF  N+    + +P + WDER +T +  + L++ + S
Sbjct: 95  KGLVIGLPLNLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADAS 152

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155
           R +R + VD +AAA ILQ  +D  +  
Sbjct: 153 RARRSEVVDKMAAAYILQGAIDSFAMF 179


>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
           SAFR-032]
 gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
 gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
 gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Bacillus pumilus SAFR-032]
 gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
          Length = 138

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+AISD     A     +   +         L   ++       ++G 
Sbjct: 2   RILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  ++++F   + +    VP V WDERL+T++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTVGPRGEASQSFAKVL-ENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138


>gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
 gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
          Length = 140

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 82/136 (60%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +V  +         ++  +    +   +IG+
Sbjct: 2   RVMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGM 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN + GPR  +++ +  ++ ++++ +P VF DERLTT+ A+++L+ + NVSRKKR +
Sbjct: 62  PKNMNNTAGPRAEASQKYGRSL-EKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRKE 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAVIILQNYLD 136


>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
           bathyomarinum JL354]
          Length = 162

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           L ++L     +  +DLGTK IG+A+ D G RFA     L R K  +   EL   I   +I
Sbjct: 14  LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              +IGLP NM+GSEGPR  ++RA+  N+ +    +P + WDER +T SA+  +I ++VS
Sbjct: 74  RGIVIGLPRNMDGSEGPRAQASRAYARNLAEA-FGLPVLLWDERWSTKSAEDAMIGLDVS 132

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           R+KR +++D+ AA +ILQ  +D
Sbjct: 133 RRKRAERIDAEAATIILQGAID 154


>gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
           5501]
 gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
           5501]
          Length = 138

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D G KRIG A SD     A  +  +      +   E+ S I   ++   ++GL
Sbjct: 1   MSRILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR   T  FV  + +     P + WDERL+T +A++ L+  +VSR KR   
Sbjct: 61  PKNMNGTLGPRAEKTLDFVEQLKEEIEP-PIITWDERLSTAAAERTLLKADVSRAKRKDV 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD  S
Sbjct: 120 IDKMAAVVILQSYLDAQS 137


>gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase
 gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 141

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I   DLG   IG+A+SD  +  A  +  + R+ + +   ++   I    ++  I+GLP 
Sbjct: 2   RIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS G        F+ ++ +++V +P    DERLT+  A+Q L++ +VSRKKR Q +D
Sbjct: 62  NMNGSLGQMADQIMDFIKSL-EQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVID 120

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  LDR
Sbjct: 121 KLAAVNILQTYLDR 134


>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 903]
 gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
           parasanguinis ATCC 903]
          Length = 139

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   MI  K  +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGA-MIAEKFGMPVDYQDERLTTVAAERMLIEQADISRSKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
           05ZYH33]
 gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
           98HAH33]
 gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
 gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84]
 gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7]
 gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407]
 gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
 gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
 gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
 gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
 gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
 gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
 gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
 gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
 gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
           suis GZ1]
          Length = 139

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+  +++  +  +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYG-DLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334]
 gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334]
          Length = 139

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 142

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +        +L+  I    +   +I
Sbjct: 3   KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD IS
Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142


>gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM
           20544]
 gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM
           20544]
          Length = 138

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 72/138 (52%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   S+D+G + IG+A+SD     A     + RK +      L   +      + + GL
Sbjct: 1   MKRYMSLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+G+EG R    + F+  +      V   FWDERL+TV+A + LI+ +VSR+KR + 
Sbjct: 61  PKNMDGTEGDRCAIVKEFMAEVKKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ  LD   
Sbjct: 121 IDKMAAVFILQGFLDSKR 138


>gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
 gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase
 gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
           natto BEST195]
 gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
          Length = 138

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+A+SD     A     +   +         L   I    I   ++G 
Sbjct: 2   RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   + +    VP V WDERLTT++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138


>gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1]
 gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1]
          Length = 139

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+A+       A P   +  +        +   +        ++GLP
Sbjct: 4   QTLLGFDFGTKSIGVAVGQELTGSARPLTAIKAQDGIPDWQVIEKLLKEWQPDFVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     R F + +  R   +     DERL+TV A+  L +    R      V
Sbjct: 64  LNMDGTEQPLTDRARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122

Query: 137 DSIAAALILQEVLDR 151
           DS +AA+ILQ+  + 
Sbjct: 123 DSQSAAIILQDWFEN 137


>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS8232]
 gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           SSI-1]
 gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS10394]
 gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS6180]
 gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS9429]
 gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS2096]
 gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS10750]
 gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           str. Manfredo]
 gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
           ATCC 10782]
 gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
 gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
 gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
 gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
 gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
 gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
 gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
 gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
 gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS10394]
 gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
 gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
           MGAS9429]
 gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS2096]
 gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS10750]
 gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
           Manfredo]
 gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
           ATCC 10782]
          Length = 139

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137


>gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis
           ATCC 14580]
 gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis
           ATCC 14580]
 gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
 gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase
 gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580]
 gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580]
 gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
          Length = 139

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLG+K +G+A+SD     A     +   +         L        I   ++G 
Sbjct: 2   RILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   + +    VP V WDERL+T++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTVGPRGEASQKFAEVL-EETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138


>gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
 gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
          Length = 140

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFII 73
            +    +D+G+K IG+A+SD     A     +   +         L + I    +   +I
Sbjct: 1   MKRAIGLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKRLEAIIKEYGVEIIVI 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G P NMNGS GPR  ++ AF    I+ +  +  V  DERLTT+ A+++LID +VSRKKR 
Sbjct: 61  GHPKNMNGSIGPRAEASEAFARE-IETQTGLSTVLVDERLTTMQAERMLIDADVSRKKRK 119

Query: 134 QKVDSIAAALILQEVLDRIS 153
           Q +D +AA +ILQ  LDR +
Sbjct: 120 QVIDKMAAVMILQSYLDRAN 139


>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
 gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
          Length = 147

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SDP    A     +   +  +      +   +  E +A F++GL
Sbjct: 2   RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV +++ +   + +R   +P  F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62  PKNMNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA  ILQ  LDR   L
Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142


>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM
           20016]
 gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
 gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
 gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           SD2112]
 gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
 gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
 gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
 gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016]
 gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
 gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
 gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           SD2112]
 gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
          Length = 147

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+++SDP    A     +   +  +      +   +  E +A F+IGL
Sbjct: 2   RLMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV +++ +   +  R   +P  F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62  PKNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA  ILQ  LDR   L
Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142


>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
 gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
          Length = 139

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RLMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGEKIAE-LFDIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  L+R+
Sbjct: 121 VIDKLAAQLILQNYLERM 138


>gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
 gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
          Length = 138

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+A+SD     A     +   +         +        +   ++G 
Sbjct: 2   KIMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GPR  +++ +   +  +++ +P + WDERL+T  A++IL++ +VSRKKR + 
Sbjct: 62  PKNMNNTIGPRAEASKVYAEEL-KKRLNLPVILWDERLSTAQAERILLEADVSRKKRKKV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA++ILQ  LD 
Sbjct: 121 IDKMAASVILQGFLDS 136


>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
 gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
          Length = 139

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
            + I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +   N+   +
Sbjct: 1   MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP NMN + G R   T +F  + + R+  +  + WDERLTTV+++++L++  V R+ R
Sbjct: 61  LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D IAA++ILQ  LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139


>gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK355]
          Length = 139

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +     K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRRK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
 gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
          Length = 136

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +         L   + T  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           G54]
 gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
 gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 139

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
 gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
          Length = 145

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
            +    +D GTK +G+A+SD     A     + RK   K+ QT   + + I    ++  +
Sbjct: 2   KERWMGLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP NMN + G R   T+ F   M+ R+  +  V WDERLTT+ +++IL +  V R+ R
Sbjct: 62  LGLPKNMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENR 120

Query: 133 IQKVDSIAAALILQEVLD 150
            +++D +AA LILQ  +D
Sbjct: 121 KERIDWMAATLILQSYMD 138


>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
           casseliflavus ATCC 12755]
          Length = 143

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SDP    A     +   +         L   +    ++ F++GL
Sbjct: 2   RIMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPR  ++ A+    I+++  +P V+ DERLTTV A+++L++  N SR KR +
Sbjct: 62  PKNMNNTIGPRAEASMAYGAA-IEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAVMILQNYLD 136


>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
 gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
          Length = 148

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+AISD     A     + RK   K+ +T   +   +    +   ++G
Sbjct: 2   RIMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R   +  F   M+ R+  +  V WDERLTTV A++ LI+  V R+ R Q
Sbjct: 62  FPKHMNNDVGERAKKSLEF-KEMLVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRKQ 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D IAA  ILQ  LD I
Sbjct: 121 YIDKIAAVFILQGYLDSI 138


>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 140

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +D+G K IG+A+SD     A P   + R+   Q   ++ + I   NIA  ++GL
Sbjct: 5   MEKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+      F   + ++   V  ++ DER+TT+SA +ILI+  V R+ R Q 
Sbjct: 65  PKNMNNTLGPQSEKVLKFSEKLKNK-YGVEIIYIDERMTTISANRILIEGEVRRENRKQY 123

Query: 136 VDSIAAALILQEVLDR 151
           VD IAA  ILQ  LD 
Sbjct: 124 VDKIAATYILQTYLDS 139


>gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
 gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
          Length = 138

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+A+SD     A     +   +         L        I   ++G 
Sbjct: 2   RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGF 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + 
Sbjct: 62  PKNMNGTVGPRGEASQTFA-KLLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA +ILQ  LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138


>gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
           F0396]
 gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
 gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
           F0396]
 gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
          Length = 139

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+    I     +P  + DERLTTV A+++L++  +VSR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGDK-IKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 139

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++A+    I     +P  + DERLTTV A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTEGPRVEASKAYGDK-IKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS10270]
 gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
 gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
           MGAS10270]
          Length = 139

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +  PRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTNSPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137


>gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
 gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
          Length = 140

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SDP    A     + RK   K+ +T  ++   +    I   ++G
Sbjct: 2   RILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R      F   M+ ++  +  + WDERLTTVSA + L++  V R+ R +
Sbjct: 62  YPKNMNNTVGERAEKALEFGE-MLKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRKE 120

Query: 135 KVDSIAAALILQEVLDRISF 154
            +D IAA  ILQ  LD +  
Sbjct: 121 YLDGIAAVFILQGYLDSLKM 140


>gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
 gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
          Length = 151

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 6/156 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I+ +EDL     P+ P+ ++D G+K IG+A     R  + P   + R K T  A  + 
Sbjct: 1   MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +      A ++GLP+NM+GSEGPRV S RA   N++  +  +P  F DERL+T  A++
Sbjct: 56  ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMARNLMRLR-DLPIAFQDERLSTFEAEE 114

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            LI   V R KR   +D+ AAA ILQ  LDR+  L 
Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEMLR 150


>gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
           27750]
 gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
 gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
           27750]
          Length = 140

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIG 74
            I  +D+GTK +G+A+SDP    A P   + RK+  +   T   +   I+  ++   ++G
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NM+ + G R  +   F   + +R+  +P   WDERLTTV A ++L +  + R+ R  
Sbjct: 62  YPKNMDDTIGERAKACEEFAAAL-ERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKT 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA  IL+  ++ 
Sbjct: 121 VIDQLAAVFILRGYMES 137


>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
           GAS]
 gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS5005]
 gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
 gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
           MGAS5005]
          Length = 139

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137


>gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6]
 gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6]
          Length = 139

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EELFSLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
           HTCC2083]
 gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 160

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I+D   +L   + +  +DLGTK IG+++SD     A P   + R K T  A  L 
Sbjct: 1   MIFETIDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLE 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I    I   ++GLP NM+GSEGPR  STRAF  N+  R+  +P  +WDERL+TV+A++
Sbjct: 61  QIIEARYIGGIVLGLPFNMDGSEGPRCQSTRAFARNLA-RQSELPITYWDERLSTVAAER 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            L+  + SR++R + +D++AAA ILQ  LDR+S +    
Sbjct: 120 ALLAADASRRRRAEVIDNVAAAYILQGALDRLSHIRREA 158


>gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946]
 gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946]
          Length = 140

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            NQ   + D GTK IG+AI       A P   L  +        L + +        ++G
Sbjct: 2   RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R     
Sbjct: 62  LPLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKG 120

Query: 135 KVDSIAAALILQEVLDR 151
            VDS++A +IL+   + 
Sbjct: 121 NVDSLSAVIILESWFEN 137


>gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch
           sediment']
          Length = 144

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q    ID GTKRIG+AISD     A P P L           +   +    I   ++GL
Sbjct: 1   MQRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP      AF   + +    V    WDERLT+++A+++LI+ ++SR KR ++
Sbjct: 61  PKNMNGTLGPSAERALAFAGQL-EEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRR 119

Query: 136 VDSIAAALILQEVLDR 151
           VD +AA LILQ  LDR
Sbjct: 120 VDQMAAVLILQGFLDR 135


>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
 gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
          Length = 162

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
                     +  +D GTKR+G+AIS   +  A P     R+ + Q    LLS IT    
Sbjct: 11  FEAEFPAEGRLLGLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRC 70

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP++M+G EG +    R F  N + +   +P  +WDER ++ +A++IL+++N+S
Sbjct: 71  KGLVVGLPVHMSGDEGQKAKEARQFG-NWVSQFAEIPVRYWDERYSSATAEEILVNLNMS 129

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
           R KR   +D +AA +ILQ  LD 
Sbjct: 130 RNKRKAYLDKLAAQIILQSFLDS 152


>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
 gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
          Length = 143

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++ ++    I     +P  + DERLTTV A+++L++  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAVMILQNYLD 136


>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
 gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
 gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 137

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGL 75
            I  +D+G+K IG+A+SD     A     +   +        EL   I+   I   IIGL
Sbjct: 2   KIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ G R  +++ +  N I++   +P   WDERLTT++A+++L++ ++SR KR + 
Sbjct: 62  PKNMNGTIGERGEASQRYA-NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQ  LD+
Sbjct: 121 IDKMAAVMILQGYLDQ 136


>gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont]
          Length = 138

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+AI       A P   L  +  T     +   +        ++GL
Sbjct: 3   SETLLGFDFGTKSIGVAIGQQLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R  +   
Sbjct: 63  PLNMDGSEQPLTARARKFANRLHGR-FGVRVELQDERLSTVEARADLFERGGYRALQKGH 121

Query: 136 VDSIAAALILQEVLD 150
           +DS +A +ILQ+  +
Sbjct: 122 IDSQSAVIILQDWFE 136


>gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
 gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
 gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 141

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            NQ   + D GTK IG+AI       A P   L  +        L + +        ++G
Sbjct: 3   RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 62

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R     
Sbjct: 63  LPLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKG 121

Query: 135 KVDSIAAALILQEVLDR 151
            VDS++A +IL+   + 
Sbjct: 122 NVDSLSAVIILESWFEN 138


>gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
 gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
          Length = 138

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 3/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
             +DLGTK +G+A+SD     A     +   +         L   I    +   ++G P 
Sbjct: 4   LGLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFPK 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR  +++ F   +++++  +P + WDERL+T++A+++LI  +VSRKKR + +D
Sbjct: 64  NMNGTVGPRAEASQRFA-KILEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRKVID 122

Query: 138 SIAAALILQEVLDR 151
            +AA +ILQ  LD 
Sbjct: 123 KMAAVVILQSYLDS 136


>gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU121]
          Length = 142

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +        +L+  I    +   +I
Sbjct: 3   KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD IS
Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142


>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 142

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+AISD     A     + RK   K+ +T   + + I    +   ++G
Sbjct: 2   RIMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +MN   G R   + AF  +M++R+  +  + WDERLTTV A++ LI+ NV R++R +
Sbjct: 62  FPKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD IAA  ILQ  LD +
Sbjct: 121 YVDKIAAIFILQGYLDSV 138


>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
 gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
          Length = 136

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID G KR+G+A+SD     A P   L +    +  +EL  +I   ++   I+G+P 
Sbjct: 2   RILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS G R   T+AF+ N +   + +P    DERLTT  A+ IL++ ++SR +R   +D
Sbjct: 62  NMDGSRGKRAEITQAFI-NFLKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVID 120

Query: 138 SIAAALILQEVLD 150
            +AAALILQ  LD
Sbjct: 121 KLAAALILQSYLD 133


>gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 139

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
            + I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +   ++   +
Sbjct: 1   MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP NMN + G R   T +F  + + R+  +  + WDERLTTV+++++L++  V R+ R
Sbjct: 61  LGLPKNMNNTVGERGEDTLSF-RDTLVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D IAA++ILQ  LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139


>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
           14863]
 gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
 gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 144

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G K IG+A+SD     A     + R+ + Q    L        +  +++G+P 
Sbjct: 2   RIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR   TRAF+  +      +P   WDERL+T++A+++L++ +VSR +R + +D
Sbjct: 62  NMNGTYGPRAELTRAFMERLAGHS-GLPVEAWDERLSTMAAERVLLEADVSRARRRKVID 120

Query: 138 SIAAALILQEVLD 150
            +AAA+ILQ  LD
Sbjct: 121 KMAAAVILQGYLD 133


>gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
           35037]
 gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
           35037]
          Length = 139

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     + + +   Q     +   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137


>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
 gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
          Length = 145

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 2/144 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +  +DLGTK IG+A+SD     A     + RKK    A  L   I    +   I+GL
Sbjct: 1   MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           P NM+GSEGPR  +TRAF  N+  R    ++   FWDERL+TV+A++ LI  + SRK+R 
Sbjct: 61  PRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRS 120

Query: 134 QKVDSIAAALILQEVLDRISFLES 157
           + +D++AA+ ILQ  LDR+  L +
Sbjct: 121 EVIDAVAASYILQGALDRLRHLRA 144


>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
 gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
          Length = 143

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
            I  +D+G KR+G+AISD     A     + RK     +    +   I+  N+   I+GL
Sbjct: 2   RILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNG+ GP   +   +   +  + + +   FWDERLTT +A++ILI+ +VSR+KR   
Sbjct: 62  PKNMNGTLGPSSEAVENYTKKL-QKAISIDLEFWDERLTTAAAERILIEADVSRQKRKGV 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA LILQ  LD 
Sbjct: 121 IDKLAAVLILQSYLDS 136


>gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
          Length = 163

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
             ++L     +A +D+GTK IGLA+ D     A P   + RKK T     L  F+  + +
Sbjct: 19  FQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQV 78

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              +IGLPLN++GS+ PR  S RAF  N+    + +P + WDER +T +  + L++ + S
Sbjct: 79  KGLVIGLPLNLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADAS 136

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155
           R +R + VD +AAA ILQ  +D  +  
Sbjct: 137 RARRSEVVDKMAAAYILQGAIDSFAMF 163


>gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1]
          Length = 159

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ I ++   L P Q IA +DLGTK IG+AISD    F++PRP + RKK T  AL L+
Sbjct: 1   MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                EN+   +IGLP+NM+GS GPRV +TR FV NM      +PFVFWDERL+T++AQ+
Sbjct: 61  QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            L++M+VSR KR  ++DS AAA ILQ VLDRI  L  ++G
Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159


>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
 gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
          Length = 146

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A+SD     A     + R+   K+ +T   +   I    I   I+G
Sbjct: 2   RIMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN S G R   T  F   +I R+  +  + WDERLTTV++++IL +  V R+ R  
Sbjct: 62  YPKNMNNSAGQRAEKTEQFKEMLI-RRTGLNVILWDERLTTVASERILQESGVRREHRKA 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA LILQ  LD + 
Sbjct: 121 VIDQVAAGLILQGYLDSLP 139


>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           NZ131]
 gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
 gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
          Length = 139

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPRV ++  +  + I+    +P  + DERLTTV A+++LI+  ++SR KR +
Sbjct: 62  PKNMNNTNGPRVDASITYGSH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137


>gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
           2603V/R]
 gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
           A909]
 gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           18RS21]
 gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           H36B]
 gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           CJB111]
 gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           515]
 gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           2603V/R]
 gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           A909]
 gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           18RS21]
 gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           515]
 gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           CJB111]
 gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           H36B]
 gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
           ATCC 13813]
          Length = 136

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   + +       L   +    +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV A+++L++  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119

Query: 137 DSIAAALILQEVLDRI 152
           D +AA LILQ  LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135


>gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing
           bacterium SSC/2]
          Length = 139

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
            + I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +   ++   +
Sbjct: 1   MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP NMN + G R   T +F  + + R+  +  + WDERLTTV+++++L++  V R+ R
Sbjct: 61  LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119

Query: 133 IQKVDSIAAALILQEVLDRI 152
            + +D IAA++ILQ  LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139


>gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase
 gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 142

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
             I  +D+G+K +G+AISD     A     L   +  +     +L++ I   N+ + +IG
Sbjct: 4   HKILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64  LPKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ  LD I 
Sbjct: 124 VIDKMAAVFILQGYLDSIQ 142


>gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
 gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
          Length = 140

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 3   HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS++A +IL+   + 
Sbjct: 122 VDSLSAVIILESWFEN 137


>gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
 gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
           ATCC 35098]
          Length = 139

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G K IG+A+SDP    A+    + RK  +     L   I   ++   ++GL
Sbjct: 1   MSRIMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+     +FV ++I ++V +  V+ DER+TT+ ++ +LIDM+V R+ R + 
Sbjct: 61  PKNMNNTIGPQAMRVMSFV-DLIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKY 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA  ILQ  LDR  
Sbjct: 120 IDKIAATFILQTYLDRRK 137


>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
 gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO]
 gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
 gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a04]
 gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133C]
 gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0082]
 gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133A]
 gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133B]
 gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a01]
 gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
 gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
 gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a01]
 gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133B]
 gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133A]
 gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133C]
 gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0133a04]
 gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
           TX0082]
          Length = 143

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAISDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++ ++    I     +P  + DERLTTV A+++L++  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAVMILQNYLD 136


>gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 140

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 2/137 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +D+G K IG+A+SDP    A     + R+ +     E+   I    +   ++G P 
Sbjct: 2   RTIGLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMNG+ G +      FV  + +  + +P + WDERLTTV A ++L++  ++ R KR + +
Sbjct: 62  NMNGTIGAQGQKVINFVEYLKEE-IDLPIMLWDERLTTVEANRMLVENADMRRDKRKKVI 120

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD   
Sbjct: 121 DKLAATIILQGYLDYKR 137


>gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
          Length = 141

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 4   HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 64  PLNMDGSEQPLTARARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122

Query: 136 VDSIAAALILQEVLDR 151
           VDS++A +IL+   + 
Sbjct: 123 VDSLSAVIILESWFEN 138


>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
          Length = 134

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +DLG K IG+A+SD     A P   + R +  Q   EL   I    +   ++G P 
Sbjct: 2   RVMGLDLGEKTIGVAVSDLLMLTAQPLLVIKRSEKEQ--EELAGIIKEYEVDTIVVGYPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ G R  +T AF   +      +P   WDERL+TV+AQ+ LI  +VSR KR + +D
Sbjct: 60  NMNGTIGERALATEAFAQEL-QAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVID 118

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  LD 
Sbjct: 119 KMAAVFILQGFLDS 132


>gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
 gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
          Length = 142

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +  +     +L+  I    +   +I
Sbjct: 3   KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073]
 gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. W3110]
 gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89]
 gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536]
 gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
 gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS]
 gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC
           8739]
 gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638]
 gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11]
 gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88]
 gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a]
 gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989]
 gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952]
 gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B]
 gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
 gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           119-7]
 gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
 gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           115-1]
 gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
 gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           116-1]
 gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
 gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
 gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
 gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
 gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           196-1]
 gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           185-1]
 gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
 gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
 gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           146-1]
 gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
 gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736]
 gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736]
 gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605]
 gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206]
 gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271]
 gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591]
 gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase
 gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase
 gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase
 gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase
 gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase
 gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase
 gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase
 gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase
 gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase
 gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase
 gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase
 gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase
 gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
           Protein
 gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
           Protein
 gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073]
 gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12
           substr. W3110]
 gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89]
 gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536]
 gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
 gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS]
 gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739]
 gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638]
 gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11]
 gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989]
 gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88]
 gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a]
 gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82]
 gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952]
 gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
 gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042]
 gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
 gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034]
 gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           196-1]
 gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           185-1]
 gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
 gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
 gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
 gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
 gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
 gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           115-1]
 gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           116-1]
 gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
 gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           119-7]
 gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
 gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
 gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           146-1]
 gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
 gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
 gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
 gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
 gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
 gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           153-1]
 gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
 gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
 gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
 gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
 gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
 gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
 gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
 gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
 gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
 gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86]
 gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736]
 gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605]
 gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206]
 gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271]
 gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591]
 gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus
           C3-41]
 gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus
           C3-41]
          Length = 135

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+A+SD     A     +   +         +   +    I  F++G P 
Sbjct: 1   MGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPT 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GPR  ++  +   +++    +P   WDERLTT++A+++LI+ +VSR+KR Q +D
Sbjct: 61  NMNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVID 119

Query: 138 SIAAALILQEVLDRIS 153
            +AA +I+Q  LD  +
Sbjct: 120 KMAAVMIVQGYLDSKN 135


>gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae
           TIGR4]
 gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
           SP23-BS72]
 gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669]
 gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
           BS457]
 gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
           BS458]
 gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B]
 gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
           SP23-BS72]
 gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC
           700669]
 gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae
           OXC141]
 gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae
           INV200]
 gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
           BS458]
 gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
           BS457]
 gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
 gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
 gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
 gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
           GA17545]
 gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
 gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
 gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
 gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
           GA47901]
          Length = 136

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 139

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +    +        L   +    +  F++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV +++ +    I++   +P  + DERLTTV A+++L++  ++SR KR +
Sbjct: 62  PKNMNNTEGPRVEASKVYGDK-INKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA LILQ  LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138


>gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
           301]
 gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
           2457T]
 gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046]
 gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227]
 gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str.
           8401]
 gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A]
 gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5]
 gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC
           3083-94]
 gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A]
 gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22]
 gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019]
 gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171]
 gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
 gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1]
 gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii
           ATCC 35469]
 gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1]
 gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026]
 gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
 gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9]
 gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str.
           12009]
 gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str.
           11368]
 gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str.
           11128]
 gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli
           FVEC1412]
 gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
 gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302]
 gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           107-1]
 gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           198-1]
 gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
 gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           187-1]
 gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W]
 gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           145-7]
 gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143]
 gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280]
 gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299]
 gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9]
 gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase
 gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase
 gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase
 gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase
 gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase
 gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase
 gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase
 gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase
 gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase
 gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase
 gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase
 gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T]
 gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A]
 gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5]
 gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94]
 gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A]
 gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22]
 gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019]
 gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171]
 gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
 gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1]
 gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6
           str. E2348/69]
 gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
 gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1]
 gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026]
 gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
 gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11
           str. 11368]
 gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2
           str. 12009]
 gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H-
           str. 11128]
 gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
 gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
 gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli
           FVEC1412]
 gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302]
 gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           198-1]
 gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
 gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           187-1]
 gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           107-1]
 gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W]
 gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           145-7]
 gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
 gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W]
 gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
           74-1112]
 gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
 gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
 gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
 gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
 gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
 gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
 gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180]
 gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357]
 gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11]
 gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120]
 gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
 gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
 gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
 gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
 gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii
           ECD227]
 gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
 gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143]
 gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280]
 gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299]
 gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
 gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
 gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
 gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9]
 gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
 gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
 gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
 gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
 gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
 gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
 gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
 gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
 gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A +IL+   ++
Sbjct: 121 IDSASAVIILESYFEQ 136


>gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
          Length = 141

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 4   HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 64  PLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122

Query: 136 VDSIAAALILQEVLDR 151
           VDS++A +IL+   + 
Sbjct: 123 VDSLSAVIILESWFEN 138


>gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
           110-3]
 gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  +     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str.
           REL606]
 gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50]
 gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)]
 gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str.
           REL606]
 gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli
           BL21(DE3)]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           EDL933]
 gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. Sakai]
 gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC869]
 gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC508]
 gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. EC4024]
 gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. TW14359]
 gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str.
           CB9615]
 gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase
 gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase
 gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC869]
 gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC508]
 gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli]
 gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
           str. TW14359]
 gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. G5101]
 gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
           str. 493-89]
 gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
           str. H 2687]
 gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
           str. LSU-61]
 gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           1044]
 gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
           1125]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A +IL+   ++
Sbjct: 121 IDSASAVIILESYFEQ 136


>gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase
 gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 143

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+++SDP    A     +   +  +      L   I  +N    ++GL
Sbjct: 2   RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN SEGPR  ++R +   +I++   +P  F DERLTTV A+++LI + N+SRKKR +
Sbjct: 62  PKNMNNSEGPRAEASRNYA-KLIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRKK 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D IAA  ILQ  LD    L
Sbjct: 121 VIDKIAAEFILQNYLDSKGKL 141


>gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39]
 gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase
 gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39]
          Length = 138

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  +     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
 gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
          Length = 139

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+A+       A P   L  +      L +   +        ++GLP
Sbjct: 4   QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     R F + +  R   +     DERL+TV A+  L +    R      V
Sbjct: 64  LNMDGTEQPLTDRARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122

Query: 137 DSIAAALILQEVLDR 151
           DS +AA+ILQ+  + 
Sbjct: 123 DSQSAAIILQDWFEN 137


>gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 142

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 2/139 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G++ +G+AISD     A       +  +       +L+  I   N++  +I
Sbjct: 3   QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   +++    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRI 152
           Q +D +AA  ILQ  LD +
Sbjct: 123 QVIDKMAAVFILQGYLDSL 141


>gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763]
 gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719]
 gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
 gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
 gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
 gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
 gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117]
 gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus 132]
 gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
 gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
 gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
 gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus MN8]
 gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase
 gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase
 gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase
 gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase
 gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase
 gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase
 gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase
 gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase
 gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase
 gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase
 gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase
 gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase
 gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763]
 gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719]
 gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
 gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
 gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
 gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
 gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117]
 gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
 gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
 gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
 gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           O11]
 gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           O46]
 gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 142

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G++ +G+AISD     A       +  +       +L+  I   N+   +I
Sbjct: 3   QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   +++    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRI 152
           Q +D +AA  ILQ  LD +
Sbjct: 123 QVIDKMAAVFILQGYLDSL 141


>gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
 gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
          Length = 156

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           +   +D +  +  N  I  ID G K IGL++SDP ++ A P   +V KK  Q   EL + 
Sbjct: 6   LCDNKDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELNNI 65

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           I    I   +IG P+NM+G+ GPR  S R F  N I +   +P   WDERL++  A  ++
Sbjct: 66  IREYEIKGIVIGNPINMDGTSGPRSQSARDFAQN-ISKNTKLPITLWDERLSSEGAFNLM 124

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            D++++  K+ + +D  AAA ILQ  LD ++
Sbjct: 125 GDLDINSSKKSKNLDQHAAAFILQGYLDFLN 155


>gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1]
 gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1]
          Length = 143

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++  +    I     +P  + DERLTTV A+++L++  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASMLYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAVMILQNYLD 136


>gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor
           NM305]
 gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor
           NM305]
          Length = 140

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + + + D GT  IG A+       A   P    +       ++   I        ++GLP
Sbjct: 3   KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     + F + + + +  +P    DERLTTV A+  +      +  +  KV
Sbjct: 63  LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121

Query: 137 DSIAAALILQEVLDRIS 153
           D+I+A LIL+   +  S
Sbjct: 122 DAISACLILESWFENQS 138


>gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
 gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           ATCC 49296]
 gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease
           [Streptococcus oralis Uo5]
 gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
 gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           ATCC 49296]
 gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease
           [Streptococcus oralis Uo5]
          Length = 136

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + +   Q     +   + +  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
 gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
 gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
          Length = 138

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718]
 gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718]
          Length = 138

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
           700338]
 gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
           700338]
          Length = 136

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A       +  +        L   +    +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN +EGPRV +++A+    I+    +P  + DERLTTV A+++L++  +VSR KR + +
Sbjct: 61  NMNNTEGPRVEASKAYGDK-INELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119

Query: 137 DSIAAALILQEVLDRI 152
           D +AA LILQ  LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135


>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
           Escherichia Coli
          Length = 138

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           PHL213]
 gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 141

 Score =  173 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + + + D GT  IG A+       A        +       E+   +        ++GLP
Sbjct: 7   KTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIPNWEEIGKLLQDWKPDMLVVGLP 66

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     R F + + + +  +P    DERLTTV A+  +      +  +  KV
Sbjct: 67  LNMDGTEQPLTQRARKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKDKV 125

Query: 137 DSIAAALILQEVLDR 151
           DSI+A LIL+   + 
Sbjct: 126 DSISACLILESWFEN 140


>gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228]
 gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A]
 gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135]
 gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase
 gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase
 gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus
           epidermidis RP62A]
 gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135]
 gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU045]
 gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU028]
          Length = 142

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +        +L+  I    +   +I
Sbjct: 3   KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase
 gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 142

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
             I  +D+G+K +G+A+SD     A       +  ++      +L   I  E+    +IG
Sbjct: 4   HKIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN S G R  ++  +   ++     +  V WDERL+T++A++ L++ +VSR KR +
Sbjct: 64  LPKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKK 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ  LD + 
Sbjct: 124 VIDKMAAVFILQGYLDSLQ 142


>gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
 gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
          Length = 140

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + + + D GT  IG A+       A   P    +       ++   I        ++GLP
Sbjct: 3   KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     + F + + + +  +P    DERLTTV A+  +      +  +  KV
Sbjct: 63  LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121

Query: 137 DSIAAALILQEVLDR 151
           D+I+A LIL+   + 
Sbjct: 122 DAISACLILESWFEN 136


>gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 143

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G++ +G++ISDP    A     +   +  +      L   I  +N    ++GL
Sbjct: 2   RILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN SEGPR  ++R +   +I+    +P  F DERLTTV A+++LI + N+SRKKR +
Sbjct: 62  PKNMNNSEGPRAEASRNYA-KLIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRKK 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D IAA  ILQ  LD    L
Sbjct: 121 VIDKIAAEFILQNYLDSKGKL 141


>gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis
           SH0165]
 gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase
 gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction
           endodeoxyribonuclease [Haemophilus parasuis SH0165]
          Length = 138

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GT  IG A+       A   P    +       ++   I        ++GL
Sbjct: 2   SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     + F + + + +  +P    DERLTTV A+  +      +  +  K
Sbjct: 62  PLNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+I+A LIL+   ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138


>gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
          Length = 142

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +        +L+  I    +   +I
Sbjct: 3   KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + D    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
           101-4-CHN]
          Length = 146

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 3/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A SDP    A     +   +  +      +   +    +A F++GL
Sbjct: 2   RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV ++R +   +  R   +P  F DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62  PKNMNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQKK 121

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA+LILQ  LDR   L
Sbjct: 122 VIDELAASLILQNYLDRHGKL 142


>gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           COH1]
 gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
           COH1]
          Length = 136

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   + +       L   +    +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++ +   + +    +P  + DERLTTV A+++L++  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQVYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119

Query: 137 DSIAAALILQEVLDRI 152
           D +AA LILQ  LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135


>gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
 gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
 gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
 gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
          Length = 136

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
           05HAS68]
 gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
 gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
 gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
          Length = 136

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +    +K       L   +    +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+  +++  +  +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYG-DLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
           MGAS315]
 gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
          Length = 136

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV ++  +  N I+    +P  + DERLTTV A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  L+R
Sbjct: 120 DKLAAQLILQNYLNR 134


>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
 gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
          Length = 144

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G++ +G+A+SD     A     +   +  +      +   +       F++
Sbjct: 1   MGRILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132
           GLP NMN + GPRV ++RA+   ++     +P  F DERLTTV A+++LI + + SRKKR
Sbjct: 61  GLPKNMNNTSGPRVDASRAYGE-LLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKR 119

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
            + +D +AA LILQ  LDR   L
Sbjct: 120 KKVIDKLAAGLILQNYLDRKGSL 142


>gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae
           Sd197]
 gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11]
 gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
 gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase
 gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase
 gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
 gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
 gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
          Length = 138

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
           JCM 2831]
          Length = 170

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   I       +    +  IDLGTK IGLA+SD GR+ A P   + R K T  A  L 
Sbjct: 1   MNFDAIRAFAAESRGGARLIGIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLA 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +      +   ++GLPLNM+GSEGPRV STRAF+ N+    + +P VF+DERL+T    +
Sbjct: 61  ALCRQHAVGGLVVGLPLNMDGSEGPRVQSTRAFMRNLAP-ILPLPHVFFDERLSTAVVTR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            LI+ + SR +R Q VD +AAA ILQ  LD +  L
Sbjct: 120 ALIEADASRARRGQLVDKLAAAYILQGCLDVMRNL 154


>gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
 gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
 gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 144

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K IG+AISDP    A     + R+   K+ ++   +        ++  ++G
Sbjct: 2   RIMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R   +      + +R++ +P V WDERLTTV A + L++  V R+ R +
Sbjct: 62  FPKNMNNTIGERAEKSLQLKEAL-ERRLGLPVVMWDERLTTVEANRTLMETGVRRENRGK 120

Query: 135 KVDSIAAALILQEVLD 150
            VD IAA  ILQ  LD
Sbjct: 121 YVDMIAAVFILQGYLD 136


>gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 155

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I +   +L     +  +D GTK IG+A+ D G RFA P   L R+K  Q   E++
Sbjct: 1   MITTAIGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I   ++   +IGLPLNM+GSE PR  + RA   N+ D  + +P + WDER TT +A++
Sbjct: 61  GIIAQRSVRGIVIGLPLNMDGSESPRSQAARAMARNLAD--LALPTLLWDERWTTQAAER 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            +I  ++SR KR +++D+ AAALILQ  +D ++
Sbjct: 119 AMIAQDMSRAKRAERIDAHAAALILQGAIDALA 151


>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
 gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
          Length = 137

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    +D+G + IG+AISDP    A     + RK   +    +   I  + ++  I+GL
Sbjct: 1   MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+    + FV  +  +   +   + DERLTTVSA ++LI+ NVSRKKR   
Sbjct: 61  PKNMNNTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119

Query: 136 VDSIAAALILQEVLD 150
           +DS+AA  ILQ  LD
Sbjct: 120 IDSVAATYILQTYLD 134


>gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
           35311]
 gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
           35311]
          Length = 140

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 4/138 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+A+SD     A     +    +K       L        I  F+IGLP 
Sbjct: 1   MGLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN S GPR  ++ AF   + +    +P V+ DERLTTV A+++LI+  + SR KR + +
Sbjct: 61  NMNNSIGPRAEASLAFGEKLQE-LFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVI 119

Query: 137 DSIAAALILQEVLDRISF 154
           D +AA +ILQ  LD    
Sbjct: 120 DKLAAVMILQNYLDSQKH 137


>gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 142

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G++ +G+AISD     A       +  ++       L+  I  EN+   +I
Sbjct: 3   KHKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +R   +  + WDERL+T++A++ L++ +VSR KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD ++
Sbjct: 123 KVIDKMAAVFILQGYLDGLN 142


>gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus
           flagellatus KT]
 gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase
 gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT]
          Length = 146

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +      +   D G KRIG+AI +     AHP   +  +   +    +   I        
Sbjct: 5   AASSRGCVLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEML 64

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP  +NG E       R F   + + +  +P    DERL++  A Q L    +S +K
Sbjct: 65  VVGLPSYLNGDEHALTQLCRKFARRL-EGRFNLPVQLVDERLSSAEASQTLKQSGISGRK 123

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           +   +D +AA  ILQ   D ++
Sbjct: 124 QKSVLDQVAAQHILQSYFDGLA 145


>gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321]
 gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321]
          Length = 136

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EELFDLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
 gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
          Length = 138

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+A+SD     A P   + RK   K+ +T   +   +    +   ++G
Sbjct: 2   RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R  +T AF  +++ R+  +  + WDERL+TV++ ++L++  V R+ R +
Sbjct: 62  YPKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA++ILQ  LD +
Sbjct: 121 VIDQVAASMILQGYLDSL 138


>gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
 gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
          Length = 139

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ +   D GTK IG+AI       A P      K       ++   I        ++GL
Sbjct: 3   NKTVMGFDFGTKSIGVAIGQEITGTARPLASFKAKDGIPDWAQIEKIIKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQLVTAQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFERGGYRSLDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase
 gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 138

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+AI       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402]
 gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 139

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
             +D+G+K IG+A+SD     A     L   +  +      L   I T N+   +IGLP 
Sbjct: 5   IGLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPK 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GP   ++  F   +      +  + WDERL+TV A++ L++ +VSRKKR Q +D
Sbjct: 65  NMNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVID 124

Query: 138 SIAAALILQEVLDR 151
            +AA  ILQ  L+ 
Sbjct: 125 KMAAVFILQGYLNS 138


>gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
 gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
          Length = 140

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q   S D GTK IG+AI       A P   L  +        + + +        ++GL
Sbjct: 3   SQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGSEQPLTARARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS++A +IL+   + 
Sbjct: 122 VDSLSAVIILESWFEN 137


>gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           RF122]
 gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase
 gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122]
          Length = 142

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G++ +G+AISD     A       +  +       +L+  I   N+   +I
Sbjct: 3   QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   +++    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRI 152
           Q +D +AA  ILQ  LD +
Sbjct: 123 QLIDKMAAVFILQGYLDSL 141


>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
           2060]
 gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
           2060]
          Length = 163

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 1   MSILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
           M+        +S +     +  +DLGTK IGLA+SD GRR A P   + R K T  A +L
Sbjct: 1   MNRESFARFAESSRAGGARLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKL 60

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
                   +   +IGLPLNM+GSEGPR  STRAFV N+    + +P + +DERL+T +  
Sbjct: 61  AGIARQHGVGGLVIGLPLNMDGSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVT 119

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + L++ + SR +R   VD +AAA ILQ  LD ++ L
Sbjct: 120 RTLLEADASRARRGDLVDKLAAAYILQGCLDVLAGL 155


>gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 140

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G++ +G+A+SDP    A     +   +         L   +    ++ F++GLP 
Sbjct: 1   MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPR  ++ A+    I+++  +P V+ DERLTTV A+++L++  N SR KR + +
Sbjct: 61  NMNNTIGPRAEASMAYGAA-IEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVI 119

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 120 DKLAAVMILQNYLD 133


>gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
 gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
          Length = 156

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 1   MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           MSIL  +     ++L     +  +D+GTK IG+A+ D G   A P   + R K ++  + 
Sbjct: 1   MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L +F+  + +   +IGLPLN++GSE PR  ++RAF  N+ D  + +P +FWDER +T + 
Sbjct: 61  LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            + L++ + SR +R + VD +AA+ ILQ  +D +
Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAIDGL 152


>gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
           29220]
 gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
           29220]
          Length = 138

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + S D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase
 gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 142

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A       +  +        L+  I  +N+   +I
Sbjct: 3   KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD + 
Sbjct: 123 KVIDKMAAVFILQGYLDSLQ 142


>gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 140

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G++ +G+A+SDP    A     +   +         L   +    +  F++GLP 
Sbjct: 1   MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPR  ++ A+    I+ +  +P  + DERLTTV A+++L++  N SR KR + +
Sbjct: 61  NMNNTIGPRAEASLAYGKA-IEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVI 119

Query: 137 DSIAAALILQEVLD 150
           D +AA +ILQ  LD
Sbjct: 120 DKLAAVMILQNYLD 133


>gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661]
 gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661]
          Length = 140

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG+AI       A P   L  +  T    ++ + +        ++GLPL
Sbjct: 5   TLLAFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R      VD
Sbjct: 65  NMDGTEQPLTARARKFA-NRIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGSVD 123

Query: 138 SIAAALILQEVLDR 151
           S++A +IL+   + 
Sbjct: 124 SLSAVIILESWFEN 137


>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 156

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           +L   D  K +     +  ID G + +G+AI DP    A P   +  KK+     EL   
Sbjct: 6   LLENSDFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDKI 65

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           I   NI   ++G P+NM+G+EGPR  ST+ FV N+I    ++P   WDERL++V A + +
Sbjct: 66  IIENNIKGIVVGHPINMDGTEGPRSQSTKDFVKNIIK-HTHLPVTLWDERLSSVGAFKSM 124

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            D+ ++   +  K+D  +AA ILQ  +D + 
Sbjct: 125 QDLGINSSSKKDKLDENSAAFILQGFIDYLK 155


>gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 145

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
           + I  +D+G+K +G+A+SD     A     +   +         LL  +    +   +IG
Sbjct: 5   ERIVGLDVGSKTVGVAMSDLLGWIAQGLETIRIDEEAGDFGFDRLLELLDQHQVKKVVIG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
           LP NMN + GPR  +++ +   ++D +  +   + DERLTT  A+++L+ + NVSR KR 
Sbjct: 65  LPKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRSKRK 124

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA +ILQ  LD  S
Sbjct: 125 KVIDKLAAVIILQNYLDANS 144


>gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
 gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
          Length = 156

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 1   MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           MS+L  +     ++L     +  +D+GTK IGLA+ D G   A P   + R K ++  + 
Sbjct: 1   MSLLTADRALFREALPHGGRLIGLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIA 60

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L +F+  + +   +IGLPLN++GSE PR  ++RAF  N+ D  + +P +FWDER +T + 
Sbjct: 61  LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            + L++ + SR +R + VD +AA+ ILQ  +D +
Sbjct: 119 TRTLLEADASRARREELVDKLAASYILQGAIDGL 152


>gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae
           INV104]
          Length = 136

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + ++  Q     +   + T  +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase
 gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase
 gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 138

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+AI       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 136

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     + + +   Q     +   +    +  F++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV +++A+   + +    +P  + DERLTTV+A+++LI+  ++SR KR + +
Sbjct: 61  NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119

Query: 137 DSIAAALILQEVLDR 151
           D +AA LILQ  LDR
Sbjct: 120 DKLAAQLILQNYLDR 134


>gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
 gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
          Length = 142

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A       +  ++      EL+  I    +   +I
Sbjct: 3   QHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEELVDIIKKNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
 gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
          Length = 148

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q +  +D+G +RIG+A+SD     A P   +     +Q    +   +    +   ++GL
Sbjct: 3   EQRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL + G  GP+   TR+F   + +R+V +P + +DER TT  A+Q+L +M V  +KR Q+
Sbjct: 63  PLTLRGEIGPQAEQTRSFAQEL-ERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQ 121

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA++ILQ+ LD I 
Sbjct: 122 IDQVAASIILQDYLDHIR 139


>gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 143

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+++SDP    A     +   +         L   I  +   + ++GL
Sbjct: 2   RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN SEGPR  + R +   M++ +  +P  F DERLTTV A+++LI + +VSRKKR Q
Sbjct: 62  PKNMNNSEGPRAEAARNYA-KMVEERFELPTDFQDERLTTVQAERMLIEEADVSRKKRKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D IAA  ILQ  LD
Sbjct: 121 VIDKIAAEFILQNYLD 136


>gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
 gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
          Length = 158

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P  P+  +D G+K IG+A+S P RR A P   + R K  + A  L +      +   IIG
Sbjct: 13  PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +PLNM+GSEGPR  S R F  N+  R   +P  +WDERL++V+A++ L+  + SR +R +
Sbjct: 73  VPLNMDGSEGPRAQSARTFGRNLSQRGP-LPVAYWDERLSSVAAERALLATDTSRARRAE 131

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA  ILQ  LDR++
Sbjct: 132 VIDAHAATHILQGALDRLA 150


>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 139

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G K IG+A+SDP    A P   + R K       +       +I+  ++GL
Sbjct: 1   MSRIMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+     +FV ++I +++    V+ DERLTT+ ++ +LIDM+V R+ R   
Sbjct: 61  PKNMNNTMGPQSMRIISFV-DLIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAH 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA+ ILQ  LDR +
Sbjct: 120 IDKIAASFILQTYLDRRN 137


>gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
           15952]
 gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
           15952]
          Length = 145

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SDP    A     +   +         +        I  F++GL
Sbjct: 2   RIMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPR  ++ ++   + ++   +P  + DERLTTV A+++LI+  N SR KR +
Sbjct: 62  PKNMNNTIGPRAEASMSYGEKL-EQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAVMILQNFLD 136


>gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
 gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
          Length = 138

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P   L  +  T     +   +T     A I+GL
Sbjct: 2   SGTLIAFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L +    R     +
Sbjct: 62  PLNMDGTEQPLTARARKFANKLHGR-FGVKIELHDERLSTVEARAGLFEHGGYRALNKGR 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
 gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
          Length = 150

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALEL 59
           M+IL ++     L P  P+  +D GTK IG+A +D  R  A P   + + KK+      L
Sbjct: 1   MAILELDQ----LPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
                       +IGLP+NM+GS GPRV + RA   N+++++  VP  FWDERL+T + +
Sbjct: 57  FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           + L++ + SR KR + +D +AAA ILQ  +DR+S
Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLS 149


>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
 gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
          Length = 138

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+A+SD     A P   + RK   K+ +T   +        +   ++G
Sbjct: 2   RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NMN + G R  +T AF  +++ R+  +  + WDERL+TV++ ++L++  V R+ R +
Sbjct: 62  YPKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D +AA++ILQ  LD +
Sbjct: 121 VIDQVAASMILQGYLDSL 138


>gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640]
 gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 151

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ   +  S
Sbjct: 124 VLDQVAAQAILQSFFEGGS 142


>gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20]
 gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase
 gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20]
          Length = 143

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SDP    A     +   +  +      L   I  +     ++GL
Sbjct: 2   RLLGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN SEGPR  + R +   M++ +  +P  F DERLTTV A+++L+ + +VSRKKR Q
Sbjct: 62  PKNMNNSEGPRAEAARQYAQ-MVEDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D IAA  ILQ  LD
Sbjct: 121 VIDKIAAEFILQNYLD 136


>gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 147

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
              +  +D+G++ +G+A+SD     A     +   +  Q      +   +    +  F++
Sbjct: 1   MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
           GLP NMN + GPRV + +A+   ++  K  +P  F DERLTTV A+++L++  + SRKKR
Sbjct: 61  GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
            + +D +AA+LILQ  LD    L
Sbjct: 120 KKVIDKLAASLILQNYLDAKGKL 142


>gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
 gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
          Length = 145

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 82/141 (58%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A SDP    A     +   +  +      +   + +  +A F++GL
Sbjct: 2   RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV + R +   +++ +  +P  + DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62  PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA LILQ  LDR   L
Sbjct: 121 VIDELAATLILQNYLDRHGKL 141


>gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
 gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
          Length = 151

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ   +  S
Sbjct: 124 VLDQVAAQAILQSFFEGGS 142


>gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase
          Length = 147

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
              +  +D+G++ +G+A+SD     A     +   +  Q      +   +    +  F++
Sbjct: 1   MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
           GLP NMN + GPRV + +A+   +++ K  +P  F DERLTTV A+++L++  + SRKKR
Sbjct: 61  GLPKNMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
            + +D +AA+LILQ  LD    L
Sbjct: 120 KKVIDKLAASLILQNYLDAKGKL 142


>gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 2/137 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +D+G K IG+AISDP    A     + R  +    LE+     +      ++G P 
Sbjct: 2   RTIGLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMNG+ G +      FV  +  +++ +P + WDERLTTV A ++LI+  ++ R KR + +
Sbjct: 62  NMNGTIGSQGQKVINFVEVL-KKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKVI 120

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD   
Sbjct: 121 DKLAATIILQGYLDHKR 137


>gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
           43768]
 gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
           43768]
          Length = 151

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA  ILQ   +  S
Sbjct: 124 VLDQVAAQAILQSFFEGGS 142


>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           Lc 705]
 gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
 gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 144

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SDP    A     +   +  Q      L   +T   + AF++GL
Sbjct: 2   RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN S GPR   ++A+  +++     +P  F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62  PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAQMILQNYLD 136


>gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 145

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A SDP    A     +   +  +      +   + +  +A  ++GL
Sbjct: 2   RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV + R +   +++ +  +P  + DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62  PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA LILQ  LDR   L
Sbjct: 121 VIDELAATLILQNYLDRHGKL 141


>gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
 gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
          Length = 142

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A       +  ++      +L+  I    +   +I
Sbjct: 3   KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC
           334]
 gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23]
 gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
 gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase
 gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase
 gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334]
 gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23]
 gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
 gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
 gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
          Length = 144

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SDP    A     +   +  +      L   +    + AF++GL
Sbjct: 2   RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN S GPR   ++A+   ++     +P  F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62  PKNMNNSIGPRAEKSQAYGE-LLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAQMILQNYLD 136


>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
 gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
          Length = 143

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 71/133 (53%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G+K IG+A SD     A     + RK        L +  T   +   ++G P 
Sbjct: 4   RILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPR 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG +   V    AF+  +  +   + FV+WDERLTT+ A+Q+L+   V R+KR Q VD
Sbjct: 64  HMNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQFVD 123

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 124 KMAAILILQNYLD 136


>gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis
           29755]
 gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis
           29755]
          Length = 138

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GT  IG A+       A        +       ++   I        ++GL
Sbjct: 2   SQTVLAFDFGTNSIGCAVGQSITGTAQGLSAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     + F   + + +  +P    DERLTTV A+  +      +  +  K
Sbjct: 62  PLNMDGTEQPLTQRAKKFAKRL-NGRFNLPVELQDERLTTVEAKSEIFTRGGFKALKKGK 120

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+I+A LIL+   ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138


>gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori]
 gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori]
          Length = 138

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG+AI       A P P L  +  T     +   +        I+GLPL
Sbjct: 4   TLLAFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVD
Sbjct: 64  NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVD 122

Query: 138 SIAAALILQEVLDR 151
           S +A +IL+   ++
Sbjct: 123 SASAVIILESYFEQ 136


>gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 142

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
              I  +D+G++ +G+AISD     A     L   +  +      L+S I   N+ + +I
Sbjct: 3   RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
           27405]
 gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
           2360]
 gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
 gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
 gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
           27405]
 gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
           2360]
 gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
 gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
           1313]
          Length = 141

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLP 76
            +  ID G  RIG+AISDP    A     +  R  V      +   +    +   I+G P
Sbjct: 2   RVLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGFP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NM+G+ G R   T  F+  +  R   +  + WDERLTTV+A + + +M + + K+   V
Sbjct: 62  KNMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLVV 121

Query: 137 DSIAAALILQEVLDR 151
           D IAA  ILQ  LD 
Sbjct: 122 DQIAAVYILQGYLDS 136


>gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 138

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + S D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 139

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G K IG+A+SDP    A  +  + RKK +     LL  I   ++   ++GL
Sbjct: 1   MSRIMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+     +FV +++ ++  V  V+ DER+TT+ ++ +LIDM V R+ R Q 
Sbjct: 61  PKNMNNTIGPQSMKVMSFV-DLLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQY 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA  ILQ  LDR  
Sbjct: 120 IDKIAATFILQTYLDRRK 137


>gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase
 gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 137

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT  IG A+       A   P    +       ++   I        ++GLP
Sbjct: 3   RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     + F + + + +  +P    DERLTTVSA+  + +    +  +  KV
Sbjct: 63  LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121

Query: 137 DSIAAALILQEVLD 150
           DSI+A LIL+   +
Sbjct: 122 DSISACLILESWFE 135


>gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956]
 gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase
 gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956]
          Length = 145

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A SDP    A     +   +  +      +   + +  +A F++GL
Sbjct: 2   RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV + R +   +++ +  +P  + DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62  PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA LILQ  LD
Sbjct: 121 VIDELAATLILQNYLD 136


>gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
 gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
          Length = 147

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
              +  +D+G++ +G+A+SD     A     +   +  Q      +   +    +  F++
Sbjct: 1   MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
           GLP NMN + GPRV + +A+   ++  K  +P  F DERLTTV A+++L++  + SRKKR
Sbjct: 61  GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
            + +D +AA+LILQ  LD    L
Sbjct: 120 KKVIDKLAASLILQNYLDARGKL 142


>gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens
           16/4]
          Length = 142

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFI 72
              I  +D GTK +G+AISDP    A     + R++   +  T + +        +   I
Sbjct: 1   MSRILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKII 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P NM+ SEG R   T  F   +++++V +P    DERLTTV A +IL +  V++K R
Sbjct: 61  LGYPRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDR 119

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +D IAAA+ILQ+ LD 
Sbjct: 120 KKVIDQIAAAIILQDYLDN 138


>gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase
 gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase
 gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase
 gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase
 gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase
 gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase
 gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase
 gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase
 gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase
 gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 138

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG+AI       A P P +  +  T     +   +        I+GLPL
Sbjct: 4   TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVD
Sbjct: 64  NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122

Query: 138 SIAAALILQEVLDR 151
           S +A +IL+   ++
Sbjct: 123 SASAVIILESYFEQ 136


>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           HN001]
 gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           GG]
 gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
           HN001]
 gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
 gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
           GG]
          Length = 144

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SDP    A     +   +  Q      L   +T   + AF++GL
Sbjct: 2   RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN S GPR   ++A+  +++     +P  F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62  PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAQMILQNYLD 136


>gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase
 gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase
 gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase
 gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 138

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG+AI       A P P +  +  T   + +   +        I+GLPL
Sbjct: 4   TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     KVD
Sbjct: 64  NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122

Query: 138 SIAAALILQEVLDR 151
           S +A +IL+   ++
Sbjct: 123 SASAVIILESYFEQ 136


>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
 gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
          Length = 144

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SDP    A     +   +  Q      L   +T   + AF++GL
Sbjct: 2   RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN S GPR   ++A+  +++     +P  F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62  PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 121 VIDKLAAQMILQNYLD 136


>gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
 gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
          Length = 139

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ +   D GTK IG+AI       A P      K       ++   I        ++GL
Sbjct: 3   NRTVMGFDFGTKSIGVAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQLVTTQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFEQGGYRSLDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   +R
Sbjct: 122 VDATSAVIILESWFER 137


>gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM
           1131]
 gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM
           1131]
          Length = 139

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + + D GTK IG+A+       A P   L          ++   +        I+GL
Sbjct: 3   GRTLLAFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 63  PLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKGK 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 122 VDSASAVVILESWFEQ 137


>gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
 gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
          Length = 140

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
               +D+G+K +G+A+SDP    A     +   +  +      +   I    +   +IGL
Sbjct: 2   RTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQ 134
           P NMN S GPR  ++  +   +I     +P +  DERLTTV A+++LI+    SR KR +
Sbjct: 62  PKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA +ILQ  L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137


>gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
 gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase
 gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
          Length = 150

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D G KRIG+A+ D     A     ++RK        + S + T ++   +IG PL
Sbjct: 2   RILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++G+EG +      F   + +  + +P + WDE LTT  A++IL    V  +KR   VD
Sbjct: 62  RLDGTEGIQCEKVVRFARRL-EAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA+LILQ  LD IS
Sbjct: 121 RLAASLILQSYLDAIS 136


>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
           315-B]
 gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
           315-B]
 gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 147

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G K IG+AISD     A P   + R    +   ++   I   ++   ++GLP 
Sbjct: 3   RVLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPK 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMN + GP     + F   + ++   +  V+ DER+TT+ A+ +L++ +V R+ R + VD
Sbjct: 63  NMNNTLGPTCQMVQKFSEKLKNK-FRLELVYVDERMTTLMAKDVLMEASVRRENRKKYVD 121

Query: 138 SIAAALILQEVLDR 151
            IAAA IL+  +D 
Sbjct: 122 KIAAAFILKTYMDS 135


>gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC
           3773]
          Length = 143

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SDP    A     +   +         L   I  + +   ++GL
Sbjct: 2   RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN SEGPR  + R +   M++    +P  F DERLTTV A+++LI + ++SRKKR Q
Sbjct: 62  PKNMNNSEGPRAEAARRYA-KMVEETFGLPTDFQDERLTTVQAERMLIEEADISRKKRKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D IAA  ILQ  LD
Sbjct: 121 VIDKIAAEFILQNYLD 136


>gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible
           Holliday junction resolvase in Mycoplasmas and B.
           subtilis) [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase
 gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase
 gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 137

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT  IG A+       A   P    +       ++   I        ++GLP
Sbjct: 3   RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE P     + F + + + +  +P    DERLTTVSA+  + +    +  +  KV
Sbjct: 63  LNMDGSEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121

Query: 137 DSIAAALILQEVLD 150
           DSI+A LIL+   +
Sbjct: 122 DSISACLILESWFE 135


>gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 142

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
              I  +D+G++ +G+AISD     A     L   +  +      L+S I   N+ + +I
Sbjct: 3   RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
           2228]
          Length = 135

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID G KR+G+A+SD     A P   L      +  +E+  +I   ++   I+G+P 
Sbjct: 2   RILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N++GS G R   T+AF+ N ++ ++ +P    DERLTT  AQ IL++ +VSR+ R + +D
Sbjct: 62  NLDGSRGKRAEITQAFI-NFLNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVID 120

Query: 138 SIAAALILQEVLDRI 152
            +AA+LILQ  LD +
Sbjct: 121 KLAASLILQSYLDSL 135


>gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
 gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
          Length = 138

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
 gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
          Length = 157

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G +RIG+AISD     A P   L R    +    +          A + GLPL
Sbjct: 13  RIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHEATAIVAGLPL 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +M+G   P+   ++AF   +  R   +P  FWDERLT+ +A +IL         R   +D
Sbjct: 73  HMSGDLSPQAQKSQAFAQELAKR-TGLPLYFWDERLTSHAAHEILDVSGFGTTGRKAVID 131

Query: 138 SIAAALILQEVLD 150
            +AA LILQ  LD
Sbjct: 132 QVAAVLILQGFLD 144


>gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 143

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SDP    A     +   +  +      L   I  +     ++GL
Sbjct: 2   RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN SEGPR  ++R +   M+  K  +P  F DERLTTV A+++LI + N+SRKKR Q
Sbjct: 62  PKNMNNSEGPRAEASRLYA-KMVQDKFNLPIDFQDERLTTVQAERMLIEEANISRKKRKQ 120

Query: 135 KVDSIAAALILQEVLD 150
            +D IAA  ILQ  LD
Sbjct: 121 VIDKIAAEFILQNYLD 136


>gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 159

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  + D+ +S+   Q +  +D+G K IGLA+SD G + A P   L R K T    EL 
Sbjct: 1   MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +  +N+   ++G P+NM+GS GPR  STR F + ++ R   VP  F DERL+T + + 
Sbjct: 61  KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFAYALM-RIRDVPVFFQDERLSTQAVES 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            +I  +++R KR  + D++AA  ILQ  LD I
Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151


>gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
 gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
          Length = 138

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+A+       A     L  +  T    ++   +        ++GL
Sbjct: 3   SETLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE       R F + +  R   V     DERL+TV A+  L +    R  +   
Sbjct: 63  PLNMDGSEQELTARARKFANRLHGR-FGVRVELQDERLSTVEARAGLFERGGYRALQKGA 121

Query: 136 VDSIAAALILQEVLD 150
           VDS +A +IL++  D
Sbjct: 122 VDSQSAVIILEDWFD 136


>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
           2782]
 gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
           2782]
          Length = 142

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
            I  ID G  RIG+AISDP    A     +  K+ + +  L L   I    +   +IG P
Sbjct: 2   RILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +NMNG++GPR   T  F+  + D       + WDERLTTVSA + + ++ +   K+   V
Sbjct: 62  INMNGTKGPRTERTEEFIKKISD-FGEFNIIKWDERLTTVSAHRTMNELGIKASKKKDIV 120

Query: 137 DSIAAALILQEVLDRIS 153
           D+++A LILQ  LDR++
Sbjct: 121 DTMSAVLILQGYLDRMA 137


>gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
 gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
          Length = 143

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + RK   Q   +L + +T  N+   ++GLP  M
Sbjct: 7   LGLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVVGLPYCM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F    I + + +P  + DERLT+V A+  L       +     VD +
Sbjct: 67  DGSIGFQAKQVQKFAKR-ISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNKGLVDRL 125

Query: 140 AAALILQEVLDRISF 154
           AA +ILQ+ LD+   
Sbjct: 126 AATIILQQWLDQRRA 140


>gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
 gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 143

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+++SD     A P   +             L   I        ++GL
Sbjct: 4   RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R  ++R +   + ++   +   + DERLTT  A+++LID  V RK R + 
Sbjct: 64  PKHMNGDEGIRAEASRDYGTKLANK-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 123 IDKLAAVLILQNYLD 137


>gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
           23970]
 gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
           23970]
          Length = 151

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAESLLSEARVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D  AA  ILQ   +
Sbjct: 124 VLDQAAAQAILQSFFE 139


>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
 gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
          Length = 144

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     +     +   +  +      +   +    +  F++GL
Sbjct: 2   RLMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN S GPR  +++ +   + D+   +P  F DERLTTV AQ++L  + +VSR KR +
Sbjct: 62  PKNMNNSLGPRAEASQQYGKRLEDK-FNLPVDFEDERLTTVEAQRMLTEEADVSRAKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA LILQ  LDR
Sbjct: 121 VIDKLAAGLILQNYLDR 137


>gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
           2876]
 gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
           2876]
          Length = 144

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G++ +G+A+ DP    A     + RK   K+ QT   +       N    ++G
Sbjct: 2   RIIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP NMN + G RV  T  F   + +R+  +  V WDERLTTV+A   +++  + R+ R +
Sbjct: 62  LPKNMNNTSGDRVDKTMDFKAAL-ERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRKE 120

Query: 135 KVDSIAAALILQEVLDRISFLESS 158
            VD IAA LILQ  LD ++  +  
Sbjct: 121 YVDMIAAQLILQGYLDSLAAEQKG 144


>gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10]
 gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua]
 gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516]
 gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides
           F]
 gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
 gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola]
 gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1]
 gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis YPIII]
 gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92]
 gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
 gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
 gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
 gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
 gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase
 gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase
 gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase
 gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase
 gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase
 gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase
 gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase
 gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10]
 gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516]
 gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua]
 gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F]
 gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
 gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola]
 gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
           YPIII]
 gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
 gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
 gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
 gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
 gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
 gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
 gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 140

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG+AI       A        +  T    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQPLTARARRFANRLHGR-FGVQVALQDERLSTVEARANLFDRGGYRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   D 
Sbjct: 122 VDAASAVIILESWFDE 137


>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
           12680]
          Length = 144

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D G KRIG+AISD     A P   + R  +      +     T  +   ++GLPL
Sbjct: 2   RILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N+NGS G +   +      +    + +    WDERL+T + Q +L++ + SR+KR + VD
Sbjct: 62  NLNGSRGEKAAQSAKLAQEL-KEHLSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVVD 120

Query: 138 SIAAALILQEVLDRI 152
            +AAA ILQ  LDRI
Sbjct: 121 KLAAAYILQGYLDRI 135


>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
           cellulolyticum H10]
 gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
 gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
          Length = 142

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
            I  ID G  RIG+AISDP    A     +  K  + +  L L   I   ++   +IG P
Sbjct: 2   RILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +NMNG++GPR   T  F+  + D       + WDERLTTVSA + + ++ +   K+   V
Sbjct: 62  INMNGTKGPRTERTEEFIKKISD-LGQFNIIKWDERLTTVSAHRTMNELGIKASKKKGIV 120

Query: 137 DSIAAALILQEVLDRIS 153
           D+++A LILQ  LDRI+
Sbjct: 121 DTMSAVLILQGYLDRIA 137


>gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str.
           'morsitans']
 gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase
 gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 141

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             I + D GT+ IG+AI       A P      +       ++   +        ++GLP
Sbjct: 5   GSIMAFDFGTRSIGVAIGQRVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETVVVGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE P     R F + M  R   V  V  DERL+TV A+  L +    R     KV
Sbjct: 65  LNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALEKGKV 123

Query: 137 DSIAAALILQEVLDR 151
           D+ +A +IL+  L++
Sbjct: 124 DAGSAVIILESWLEQ 138


>gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
 gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
          Length = 157

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G  RIG+A+SDP    A     L           +   I    +   ++GL
Sbjct: 1   MSRILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+ S G +   T  F   +  R V VP   WDERLTTV A++ LID  + R +R + 
Sbjct: 61  PRNMDASLGAQGRYTEEFAEKLRHR-VRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKV 119

Query: 136 VDSIAAALILQEVLD 150
           VD +AA ++LQ  LD
Sbjct: 120 VDQVAATVLLQSYLD 134


>gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
           DSM 5476]
 gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
           DSM 5476]
          Length = 145

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D G  R GLA+ D     A P   +  +       +        ++   ++G P 
Sbjct: 2   KIMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS G R      F   +    + +P   WDER TTVSA Q L ++NV  +KR + VD
Sbjct: 62  NMDGSCGERAKKCEEFAKRL-GEMIPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA +IL+  L+   
Sbjct: 121 EVAATIILESYLEYRK 136


>gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
 gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
          Length = 130

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           GTK +G+A+SD     A     +    ++       +   +   N+   ++GLP NMNG+
Sbjct: 2   GTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNGT 61

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
            GPR  + + F  N+ +  + +  V WDERL+T++A+++LI  +VSRKKR Q +D +AA 
Sbjct: 62  IGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAV 120

Query: 143 LILQEVLDR 151
           +ILQ  LD 
Sbjct: 121 VILQGFLDS 129


>gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 166

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           ++ + +   +  +  ID GTK +GLA+SD  R  A     + R K T  A  LL+  T  
Sbjct: 18  QEFIAAATASGRLIGIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALATEH 77

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            +   ++GLP N++G+EGPR  +TRA   N+ ++   +P + WDERLTT  A+++LID +
Sbjct: 78  GVTGLVLGLPRNLDGTEGPRAQATRALARNL-NKLSPLPILLWDERLTTAEAERMLIDAD 136

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRI 152
            SRK+R + +D +AA +ILQ  LDR+
Sbjct: 137 QSRKRRGEVIDKLAATIILQSALDRL 162


>gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus
           lugdunensis M23590]
 gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus
           lugdunensis M23590]
          Length = 142

 Score =  169 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 2/140 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +  +     +L + I + N+   +I
Sbjct: 3   QHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   +++    +  + WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIHYKELILEAMPDMKVIMWDERLSTMAAERSLLEADVSRQKRK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD I 
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142


>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
 gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
 gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
 gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
          Length = 143

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
            I  +DLGT+  G+AISD     AH       ++    +    +   + T  I+  ++GL
Sbjct: 2   KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMNGS G R   T+ F   + +    V  + WDERLTT+  +++LI  +VSR KR + 
Sbjct: 62  PKNMNGSIGERGQVTQEFAKKL-EEATNVTVILWDERLTTMQVERVLIQADVSRNKRKKV 120

Query: 136 VDSIAAALILQEVLDR 151
           VD +AA +ILQ  LD 
Sbjct: 121 VDKMAATIILQSYLDS 136


>gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
 gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
          Length = 156

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 2   SILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
           SI     L  + KPN  + +   D GT RIG+AI       A P   L  K+      E+
Sbjct: 4   SISTGTSLDDNQKPNTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEI 63

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              +      AF++GLPL+M+GSE       R F   +  R   +P+   DERL++  A+
Sbjct: 64  TRIVEEWKPDAFVVGLPLDMDGSENEMCQRARKFAKRLHGR-FNLPYHMMDERLSSYEAK 122

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149
             +I    +R  +   VD +AA +IL+   
Sbjct: 123 GQVIARGGNRNFKENSVDGLAAQMILETWF 152


>gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase
 gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica
           W22703]
          Length = 140

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG+AI       A        +  T    ++   +        ++GL
Sbjct: 3   NRTIVAFDFGTKSIGVAIGQEVTGTARALTSFKAQDGTPDWQKVEKLLKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQPLTARARRFANRLHGR-FGVQIALQDERLSTVEARANLFDSGGYRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   D 
Sbjct: 122 VDAASAVIILESWFDE 137


>gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase
 gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase
 gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
           PB1/+]
          Length = 140

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG+AI       A        +  T    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQPLTARARRFANRLHGR-FGVQIALQDERLSTVEARANLFDRGGYRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   D 
Sbjct: 122 VDAASAVIILESWFDE 137


>gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703]
 gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703]
          Length = 139

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +  T    ++ + +        I+GL
Sbjct: 3   NRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPITARARKFAQRLHGR-FGVAIQLHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+ +A +IL+   ++ S
Sbjct: 122 VDAASAVIILESWFEQQS 139


>gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
 gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
          Length = 140

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
               +D+G+K +G+A+SDP    A     +   +  +      +   I    +   +IGL
Sbjct: 2   RTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQ 134
           P NMN S GPR  ++  +   ++     +P +  DERLTTV A+++LI+    SR KR +
Sbjct: 62  PKNMNNSIGPRAEASLRYAE-LVKETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA +ILQ  L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137


>gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
           342]
 gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase
 gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
           342]
          Length = 138

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +      D GTK IG+A+       A P P L  +        +   +      A I+GL
Sbjct: 2   SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +  V  V  DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARNFANK-IHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi
           35000HP]
 gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase
 gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 138

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D GT  IG A+     + A        +        +   I        ++GLPL
Sbjct: 4   TILAFDFGTYSIGCAVGQSITKTAQSLTAFKSQDGIPNWQHIEKIIKEWQPDLLVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSE P     R F + + + +  +P    DERLTT  A+  +      +  +  K+D
Sbjct: 64  NMDGSEQPLTQRARKFANRL-NGRFNLPVALQDERLTTTEAKSEIFSRGGYKALKKDKID 122

Query: 138 SIAAALILQEVLDR 151
           +I+A LIL+   D 
Sbjct: 123 TISACLILESWFDN 136


>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
 gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
          Length = 143

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+++SD     A P   +             L   I        ++GL
Sbjct: 4   RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R  ++R +   + +    +   + DERLTT  A+++LID  V RK R + 
Sbjct: 64  PKHMNGDEGVRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 123 IDKLAAVLILQNYLD 137


>gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
          Length = 143

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+++SD     A P   +             L   I        ++GL
Sbjct: 4   RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R  ++R +   + +    +   + DERLTT  A+++LID  V RK R + 
Sbjct: 64  PKHMNGDEGIRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 123 IDKLAAVLILQNYLD 137


>gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
 gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
 gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
 gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase
 gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
 gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
 gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
          Length = 144

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A SDP    A     +   +         L   I+ + ++  +IGL
Sbjct: 2   RLLGLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPRV ++R +   M+  +  +P  + DERLT+V A ++LI + ++SR KR +
Sbjct: 62  PKNMNNTEGPRVEASRNYG-KMVSERFGLPIDYQDERLTSVEANRMLIEEADLSRAKRKK 120

Query: 135 KVDSIAAALILQEVLDRISFLESS 158
            +DS+AA LILQ  LD+   L + 
Sbjct: 121 VIDSLAAQLILQNYLDKKGRLTNG 144


>gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
 gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
 gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
 gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
          Length = 139

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +      D GTK IG+A+       A P P L  +        +   +      A I+GL
Sbjct: 3   SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +  V  V  DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARNFANK-IHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 122 VDSASAVVILESYFEQ 137


>gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 151

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTEHEMTHLSRKFGRRLHGR-FNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL    +
Sbjct: 124 VLDQVAAQAILHGFFE 139


>gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
           ATCC BAA-894]
 gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase
 gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894]
          Length = 138

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+AI       A P   +  +        +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   +     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARTFANRLHGR-FGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius
           UCC118]
 gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius
           UCC118]
          Length = 143

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G++ +G+A+SD     A     +   +  Q      +   +    +  F++GLP 
Sbjct: 1   MGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN + GPRV + +A+   +++ K  +P  F DERLTTV A+++L++  + SRKKR + +
Sbjct: 61  NMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVI 119

Query: 137 DSIAAALILQEVLDRISFL 155
           D +AA+LILQ  LD    L
Sbjct: 120 DKLAASLILQNYLDAKGKL 138


>gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58]
 gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58]
          Length = 169

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 1   MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           M+++ I+     ++L     +  +D+GTK IGLA+ D     A P   + R K  +  + 
Sbjct: 13  MTLVTIDRVAFRQALPHGGRLIGMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIG 72

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L +FI  + +   +IGLPLN++GS  PR  ++RAF HN+ D  + +P + WDER +T + 
Sbjct: 73  LAAFIDQQQVKGVVIGLPLNLDGSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAV 130

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            + L++ + SR +R + VD +AA+ ILQ  +D +
Sbjct: 131 TRTLLEADASRARRDELVDKLAASYILQGAIDGL 164


>gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
          Length = 143

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+++SD     A P   +             L   I        ++GL
Sbjct: 4   RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R  ++R +   + +    +   + DERLTT  A+++LID  V RK+R + 
Sbjct: 64  PKHMNGDEGIRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKS 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 123 IDKLAAVLILQNYLD 137


>gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
 gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
          Length = 142

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GTK IGLAI       A P      +  T    ++   +        ++GL
Sbjct: 3   NRTVFAFDFGTKSIGLAIGQEVTGTARPLTSFKAQDGTPDWQKIEKLLKEWLPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQPLTARARKFANRLHGR-FGVQVELHDERLSTVEARADLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEK 137


>gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
 gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
 gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
          Length = 143

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
            I  +D+GTK +G+++SD     A P   +             L   I        ++GL
Sbjct: 4   RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG EG R  ++R +   + +    +   + DERLTT  A+++LID  V RK R + 
Sbjct: 64  PKHMNGDEGIRAEASRDYGTKLANE-FSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122

Query: 136 VDSIAAALILQEVLD 150
           +D +AA LILQ  LD
Sbjct: 123 IDKLAAVLILQNYLD 137


>gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC
           11862]
          Length = 144

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 4/139 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
              +  +D+G++ +G+A+SD     A     +   +  +      +   +       F++
Sbjct: 1   MGRVMGLDVGSRTVGVAVSDLLGWTAQGVEIIRINEDEKEFGIARMKELVAQFQPTGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132
           GLP NMN + GPRV + RA+  +++     +P  F DERLTTV A+++L+ + + SRKKR
Sbjct: 61  GLPKNMNNTSGPRVDAARAYG-DLLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119

Query: 133 IQKVDSIAAALILQEVLDR 151
            Q +D +AAALILQ  LDR
Sbjct: 120 KQVIDKLAAALILQNYLDR 138


>gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei
           subsp. sakei 23K]
 gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase
 gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 147

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +   D+G++ +G+A+SD     A     +   +         +   +    +  F++GL
Sbjct: 2   RLMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR    + +   + +    +P  + DERLTTV A+++L++  + SRKKR Q
Sbjct: 62  PKNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRKQ 121

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA +ILQ  LD
Sbjct: 122 VIDKLAAVMILQNYLD 137


>gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 138

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P   L     T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +  V     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARKFANK-IHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
           20745]
 gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
           20745]
          Length = 143

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  S +P + + ++D+G +R+G+A+SD     A P   +  K+       L++ I   + 
Sbjct: 1   MASSSQPGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD--RLVALIERYDP 58

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              IIGLPL M+G EGP+  +TRAF   +  R V  P +FWDERLTT  A Q LI+    
Sbjct: 59  ERIIIGLPLGMSGREGPQAAATRAFAQQLRGR-VDRPIIFWDERLTTFMADQSLIEAGHR 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154
           R +R Q VD++AAALILQ  LD    
Sbjct: 118 RARRKQHVDAVAAALILQSYLDSQRA 143


>gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase
 gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 139

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            ++ I + D GTK IG+AI       A P      ++      ++   ++       ++G
Sbjct: 2   KSRTILAFDFGTKSIGVAIGQEITGTARPLTSFKAQEGIPDWQKVEKLLSEWQPDLVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+E P     R F + +  R   V     DERL+TV A+  L +    +     
Sbjct: 62  LPLNMDGTEQPLTARARKFANRLHGR-FGVAIALHDERLSTVEARADLFERGGFKALDKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD+ +A +IL+   +
Sbjct: 121 SVDAASAVIILESWFE 136


>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
 gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
          Length = 150

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
            I  +DLGTK +G+A+SD     A     +   +         L   I    I   ++G 
Sbjct: 4   RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P N NG+ GPR  +++ F   + +    VP V WDERLTT +A++ LI  +VSR+KR + 
Sbjct: 64  PKNXNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKV 122

Query: 136 VDSIAAALILQEVLDRIS 153
           +D  AA  ILQ  LD ++
Sbjct: 123 IDKXAAVXILQGYLDSLN 140


>gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
 gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase
 gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
          Length = 151

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M      D   +L     +A +D+GT+ IG+A+ D G   A P   ++R K +  A +L 
Sbjct: 1   MISASTLDFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  + +   +IGLPLN++GS+ PR  S RAF  N+      +P + WDER +T +  +
Sbjct: 61  ALVAAQLVKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTR 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
            L+D + SR +R + VD +AAA ILQ  +D +
Sbjct: 119 TLLDADASRARRAELVDKLAAAYILQGAIDAM 150


>gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
 gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
          Length = 140

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    ID G  RIG+A+SD     AHP   +  K+V      + + +T++++   I+GL
Sbjct: 1   MKRALGIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+GS GP     RAF   +           WDERLT+V+AQ+ L +     K   + 
Sbjct: 61  PRNMDGSYGPAAEKVRAFAEKL-RAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREV 119

Query: 136 VDSIAAALILQEVLDRISFL 155
           +D +AA LILQ  LD  + L
Sbjct: 120 IDQVAAQLILQGWLDSQALL 139


>gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
 gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
          Length = 143

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +       ++   +     A  I+GL
Sbjct: 3   NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARKFSQRLQGR-FGVTVELHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246]
          Length = 169

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           S  P   +  +D GTKRIG+A+ DP R  A P          +              A  
Sbjct: 10  SFPPRGALLGVDYGTKRIGVAVCDPDRVIASPVGTQANDATREPYFR--DLCARSKFAGV 67

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLPL+ +G E P     RAF   + D    +P V WDER T+ +A+  L+   ++RKK
Sbjct: 68  VVGLPLHASGEESPMSGEARAFARWLSD-LTGLPVVMWDERHTSFAAESALLGAGLTRKK 126

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           R +KVD +AA +ILQ  +D  S
Sbjct: 127 RKEKVDRVAAQMILQTFIDAGS 148


>gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 142

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D G  RIG+A  D     +HP   +      +    +   +       F++GLP++ 
Sbjct: 1   MAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHT 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E    H +R F   +  R   +P  + DERL++V A+ +L +  V  KKR   +D +
Sbjct: 61  DGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119

Query: 140 AAALILQEVLD 150
           AA  ILQ   +
Sbjct: 120 AAQAILQSFFE 130


>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
 gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
          Length = 139

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G K IG+A+SDP    ++    + RKK +     +   +   ++   ++GL
Sbjct: 1   MSRIMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+     +FV +++ ++V V  V+ DER+TT+ ++ +L+DM V R+ R + 
Sbjct: 61  PKNMNNTIGPQAMRVISFV-DLLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKY 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D IAA  ILQ  LDR  
Sbjct: 120 IDKIAATFILQTYLDRRK 137


>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
           ATCC 29328]
 gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           53516]
 gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
           ATCC 29328]
 gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
           53516]
          Length = 137

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    +D+G + IG+AISDP    A     + RK   +    +   I  + ++  I+GL
Sbjct: 1   MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+    + FV  +  +   +   + DERLTTVSA ++LI+ NVSRKKR   
Sbjct: 61  PKNMNNTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119

Query: 136 VDSIAAALILQEVLD 150
           +DS+AA  ILQ  LD
Sbjct: 120 IDSVAATYILQTYLD 134


>gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Oribacterium sinus F0268]
 gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Oribacterium sinus F0268]
          Length = 141

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I ++D G+K +GLAI+DP      P   + R+   K+ +T  E+        +   ++G
Sbjct: 2   RILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P +M+GSEG RV    AF   M+ +K+ +P   +DERL+T+ A++IL +  V + ++ +
Sbjct: 62  YPCHMDGSEGERVERVLAF-QEMLKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQKE 120

Query: 135 KVDSIAAALILQEVL 149
            +D +AA +IL++ L
Sbjct: 121 VLDQVAAQVILEDYL 135


>gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis
           HTCC2594]
 gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594]
          Length = 167

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           +   +L     + ++DLGTK IG A SD G RFA     L R +  +   +L   +++ N
Sbjct: 14  EYGDALPDGGVLLALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRN 73

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +A  ++GLP NM+GSEGPR  ++RA+  N+ +    +P + WDER +T SA+  +I  ++
Sbjct: 74  VAGLVLGLPRNMDGSEGPRAQASRAYARNLAEA-FGLPVLLWDERWSTQSAESAMIGQDM 132

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
           SR KR +K+DS AAA+ LQ  LD ++
Sbjct: 133 SRAKRAEKIDSHAAAIFLQAALDTLA 158


>gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase
 gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 138

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +      D GTK IG+A+       A P P L  +        +   +      A I+GL
Sbjct: 2   SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +  V  +  DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARNFANK-IHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 137

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT  IG ++       A   P    +       ++   I        ++GLP
Sbjct: 3   RTILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE P     + F + + + +  +P    DERLTTVSA+  + +    +  +  KV
Sbjct: 63  LNMDGSEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121

Query: 137 DSIAAALILQEVLD 150
           DSI+A LIL+   +
Sbjct: 122 DSISACLILESWFE 135


>gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591]
 gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591]
          Length = 143

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +       ++   +     A  I+GL
Sbjct: 3   NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARKFSQRLHGR-FGVNVELHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 144

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     +     +    +        +   +    +  F++GL
Sbjct: 2   RLMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQ 134
           P NMN S GPR  ++  +   + ++K  +P  F DERLTTV AQ++L  + ++SR+KR +
Sbjct: 62  PKNMNNSLGPRAEASEQYGDRL-EKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKK 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA LILQ  LDR   L
Sbjct: 121 VIDKLAAGLILQNYLDRKGKL 141


>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
           49176]
 gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
           49176]
          Length = 140

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +DLG+K  G+A++D     A     + RK   K+ QT   +        +   ++G
Sbjct: 2   RIMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P NM+GS   R   +  F   +  R   +  + WDERLTTVSA +I+I+  + R++R +
Sbjct: 62  YPKNMDGSVSKRCELSEEFAKKLTGR-TGIEVILWDERLTTVSAHEIMIEAGLKREEREK 120

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA  IL++ ++
Sbjct: 121 IVDKVAAVFILEDYMN 136


>gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
           DSM 12444]
 gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase
 gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 155

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M      ++  +L     +  +D GTK IG+A+ D   RFA     + R K      ++ 
Sbjct: 1   MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +    +   +IGLPLNM+GSE PR    RA   N+ D  + +P + WDER TT +A++
Sbjct: 61  AIVAERGVKGIVIGLPLNMDGSESPRSQGARAMARNLED--LGLPILLWDERWTTQAAER 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            +I+ + SR KR +++DS AAALILQ  +D ++
Sbjct: 119 AMIEQDFSRAKRAERIDSHAAALILQGAIDALA 151


>gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis
           HLHK9]
 gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis
           HLHK9]
          Length = 155

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
              D G  RIG+A+ D     AHP   L           + + I    I+  ++GLP + 
Sbjct: 8   LGFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLPTHA 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+        R F   +  R   +P V  DER +++ A+ +L +     +K+   +D +
Sbjct: 68  DGTPHEMTRLARRFAQRLHGR-FGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVLDQV 126

Query: 140 AAALILQEVLDR 151
           AA +ILQ   D+
Sbjct: 127 AAQVILQSFFDQ 138


>gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM
           4541]
 gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM
           4541]
          Length = 139

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + + + D GTK IG+A+       A     L          ++   +        I+GLP
Sbjct: 4   RTLLAFDFGTKSIGVAVGQEITGTARALTSLKANDGRPDWQQIEKLLKEWQPQLVIVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E       R F  N I  +  V     DERL+TV A+  L +    R     KV
Sbjct: 64  LNMDGTEQLVTSQARNFA-NRIHGRFGVQVKLHDERLSTVEAKAGLFEQGGYRALSKGKV 122

Query: 137 DSIAAALILQEVLDR 151
           DS +A +IL+   ++
Sbjct: 123 DSASAVVILESWFEQ 137


>gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis
           z3032]
 gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032]
          Length = 138

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+AI       A P   +  +        +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAIGQRVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   +     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTSRARTFANRLHGR-FGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM
           17565]
 gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM
           17565]
          Length = 141

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   I +ID G KR G+A+SD  +  A+    +   ++      +  +I  E +   IIG
Sbjct: 3   PMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGDYIAKEPVERIIIG 59

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  
Sbjct: 60  LPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 119

Query: 135 K--VDSIAAALILQEVLDRISF 154
           K  VD I+A +ILQ  L+   F
Sbjct: 120 KALVDEISATIILQTYLESKRF 141


>gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 138

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P   L     T     +   +        I+GL
Sbjct: 2   SGTLIAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +  V     DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARKFANK-IHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
           B316]
 gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
           B316]
          Length = 145

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+AISD     A  R  + RK   K+ +T   +   I    +   ++G
Sbjct: 2   RIMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+ +   R      F    I+R+  +P V WDERLTTV A +I+ +  +  + R +
Sbjct: 62  LPLNMDQTPSERSQLCLEFKDK-IERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRKE 120

Query: 135 KVDSIAAALILQEVLDR 151
            VD IAA +ILQ+ LD 
Sbjct: 121 YVDMIAAQIILQDYLDN 137


>gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC
           3537]
          Length = 143

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SDP    A     +   +  +      L   I        ++GL
Sbjct: 2   RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
           P NMN +EGPR  + R +   M++    +   F DERLTTV A+++LI + +VSRKKR +
Sbjct: 62  PKNMNNTEGPRAQAARDYA-KMVEDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRKK 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D IAA  ILQ  LDR
Sbjct: 121 VIDKIAAEFILQNYLDR 137


>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 141

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +D+G K IG++ISD     A     + R    +   E+   +   NI   ++G+P+
Sbjct: 3   RFLGLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPI 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS+       R F   +  +   V  +F DER T++ A++ LI  NV R+ R + +D
Sbjct: 63  NMDGSDTVMSKRIRKFARKLTPK-FGVEVIFQDERFTSIEAERTLIQSNVRRENRKKYID 121

Query: 138 SIAAALILQEVLDRIS 153
            +AA++ILQ  +DR++
Sbjct: 122 QLAASIILQTYIDRMN 137


>gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
           25976]
 gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
           25976]
          Length = 137

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT  IG A+       A        +       ++   I        ++GLP
Sbjct: 3   RTILAFDFGTYSIGCAVGQDITGTAQGLSSFKAQDGIPNWDQIEKVIQEWLPERLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E P     + F + + + +  +P    DERLTTVSA+  + +    +  +  KV
Sbjct: 63  LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121

Query: 137 DSIAAALILQEVLD 150
           DSI+A LIL+   +
Sbjct: 122 DSISACLILESWFE 135


>gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
 gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
          Length = 151

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D      HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 140

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG AI       A        +  T    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGAAIGQEITGTARALAAFKAQDGTPDWQKIEKLLKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGSEQPLTERARKFANRLHGR-FGVKIDLHDERLSTVEARSHLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 122 VDSASAVVILESWFEQ 137


>gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 157

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + SL+  +   ++D+G  RIG+A  DP    A P   +  + V      + + +      
Sbjct: 1   MSSLRRGRR-LALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPI 59

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++GLP ++NG EGP     R F   +      VP    DER+TTV+A Q L    V  
Sbjct: 60  EIVVGLPRSLNGREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKA 119

Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           KK    VD  AA +ILQ  L+      S  G
Sbjct: 120 KKGRSVVDQAAAVVILQNALESERAAGSPPG 150


>gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202]
 gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
          Length = 140

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT+ IG AI       A P              ++   +        ++GLP
Sbjct: 4   RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGAPDWQQIEKVLREWQPDLVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE P     R F + +  R   V     DERL+TV A+  L      R     +V
Sbjct: 64  LNMDGSEQPLTQMARKFANRLHGR-FGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122

Query: 137 DSIAAALILQEVLDRISF 154
           D+ +AALIL+   +  ++
Sbjct: 123 DAASAALILESWFEHQTY 140


>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
 gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
          Length = 154

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 5/154 (3%)

Query: 1   MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           MS++  +      +L     +  +D+GTK IG A+ D G  FA P   + R K T+    
Sbjct: 1   MSLITTDRSAFRDALPSGGRLIGLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEA 60

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L++ I  + +   +IGLPLN++GSE PR  STRAF  N  D     P + WDER +TV+ 
Sbjct: 61  LIAMIAQQGVKGLVIGLPLNLDGSESPRSQSTRAFARNCADLG---PILLWDERWSTVAV 117

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           ++ +I+ ++SR KR +++D++AAA ILQ  +D +
Sbjct: 118 ERTMIEQDMSRAKRAERIDNLAAAHILQAAIDAL 151


>gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC
           BAA-895]
 gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase
 gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895]
          Length = 138

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+AI       A   P +  +  T     +   +        I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+T+ A+  L +    R     K
Sbjct: 62  PLNMDGTEQPLTARARKFA-NRIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYFEQ 136


>gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 154

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 62/146 (42%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     RAF   +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 62  LPRSLKGGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+         G
Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147


>gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146]
 gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase
 gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 140

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT+ IG AI       A P              ++   +        ++GLP
Sbjct: 4   RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGVPDWQQIEKVLREWQPDLVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE P     R F + +  R   V     DERL+TV A+  L      R     +V
Sbjct: 64  LNMDGSEQPLTQQARKFANRLHGR-FGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122

Query: 137 DSIAAALILQEVLDR 151
           D+ +AALIL+   + 
Sbjct: 123 DAASAALILESWFEN 137


>gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320]
 gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase
 gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320]
          Length = 139

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ +   D GTK IG AI       A P      K       ++   I        ++GL
Sbjct: 3   NRTVMGFDFGTKSIGAAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F + +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQLVTTQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFEQGGYRSLDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   +R
Sbjct: 122 VDATSAVIILESWFER 137


>gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937]
 gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937]
          Length = 143

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GT+ IG+AI       A P   L  +       ++   +     A  I+GL
Sbjct: 3   NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F   +  R   V     DERL+TV A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTARARKFSQRLHGR-FGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
          Length = 139

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG A+       A   P    +        +   I     A  ++GLPL
Sbjct: 4   TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E       + F + +  R   +P    DERLTT  A+  +      R     KVD
Sbjct: 64  NMDGTEQELTLRAKKFANRLHGR-FNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVD 122

Query: 138 SIAAALILQEVLDRIS 153
            I+A LIL+   ++ S
Sbjct: 123 GISACLILESWFEQYS 138


>gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
           ATCC 25644]
 gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
           ATCC 25644]
          Length = 148

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73
              +  +D+G++ +G+A+SD     A     +   +         +   +   ++  F++
Sbjct: 1   MARLMGLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
           GLP NMN + GPR  +++A+   +I+    +P  F DERLTTV A+++L++  + SRKKR
Sbjct: 61  GLPKNMNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKR 119

Query: 133 IQKVDSIAAALILQEVLD 150
            + +D +AA+LILQ  LD
Sbjct: 120 KKVIDKLAASLILQNYLD 137


>gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA
           1090]
 gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
 gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase
 gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
          Length = 151

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   + + +  +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHADGTEHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL   L+
Sbjct: 124 VLDQVAAQAILHGFLE 139


>gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
           NRL30031/H210]
 gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
           NRL30031/H210]
          Length = 151

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D      HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           MC58]
 gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           FAM18]
 gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha14]
 gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           ATCC 13091]
 gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase
 gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase
 gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha14]
 gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha153]
 gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis
           alpha275]
 gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
           ATCC 13091]
 gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           alpha710]
 gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568]
 gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis
           OX99.30304]
 gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190]
 gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399]
 gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579]
 gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis
           ES14902]
 gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385]
 gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136]
 gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
 gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
          Length = 151

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G++    H +R F   + + +  +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL    +
Sbjct: 124 VLDQVAAQAILHGFFE 139


>gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
           DSM 20284]
 gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
           DSM 20284]
          Length = 146

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SD     A     +   +         +   ++   +A F+IGL
Sbjct: 2   RLMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV + R +   ++     +P  F DERLTTV A+++LI+  + SR KR +
Sbjct: 62  PKNMNNTEGPRVEAARNYG-KLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA+LIL+  L+
Sbjct: 121 VIDKLAASLILENYLN 136


>gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC
           51142]
 gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase
 gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp.
           ATCC 51142]
          Length = 143

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + R+   Q   +L + +    +   +IGLP +M
Sbjct: 7   LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVIGLPYSM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+ G +    + F   +    + +P  + DERLT+V A+  L       +     VD +
Sbjct: 67  DGTIGFQAKKVQKFAKRLSTA-LELPIEYIDERLTSVEAETHLKSQKKYSRYNKGLVDRL 125

Query: 140 AAALILQEVLDRISF 154
           AA +ILQ+ LD+   
Sbjct: 126 AATIILQQWLDQRRA 140


>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR]
 gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
          Length = 133

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+GTKRIG+A+SDP R  A     +   K  +   EL   I    ++  ++GLP 
Sbjct: 2   RVLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS GP+          + +  + +P   +DERLTTV+A++IL++ ++SR KR Q VD
Sbjct: 59  NMDGSLGPKAQEILELTEKLRE-TLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVD 117

Query: 138 SIAAALILQEVLDRIS 153
             AA LILQ  LD   
Sbjct: 118 KTAAVLILQGYLDSTR 133


>gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
 gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
 gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
 gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
          Length = 141

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           + P   I +ID G KR G+A+SD  +  A+    +   ++      +  ++  E +   I
Sbjct: 1   MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYMAKEPVERII 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R
Sbjct: 58  IGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117

Query: 133 IQK--VDSIAAALILQEVLDRISF 154
             K  VD I+A +ILQ  L+   F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141


>gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC
           14672]
 gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 154

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 63/146 (43%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DPG   A P   +  + V      L   I        ++G
Sbjct: 2   RQGRRLAIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F   +    + VP    DER+TTV+A Q L    V  KK   
Sbjct: 62  LPRSLKGGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+         G
Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147


>gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
           30120]
 gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
           30120]
          Length = 139

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + + + D GTK IG+A+       A     L          ++   +        I+GLP
Sbjct: 4   RTLLAFDFGTKSIGVAVGQEITGTARALTSLKASDGRPDWSQIEKLLKEWQPQLVIVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E       R F  N I  +  V     DERL+TV A+  L +    R     KV
Sbjct: 64  LNMDGTEQLVTSQARNFA-NRIHGRFGVQVQLHDERLSTVEAKAGLFEQGGYRALSKGKV 122

Query: 137 DSIAAALILQEVLDR 151
           DS +A +IL+   ++
Sbjct: 123 DSASAVVILESWFEQ 137


>gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
 gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
          Length = 139

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  IDLG  R G+A+ D     A P   +      +   +++            +GLP N
Sbjct: 3   ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIALGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEG    + R F   ++  K  +P  F DER TTV+A   L   +V  KKR   VDS
Sbjct: 63  MDGSEGESAQNAREFGA-LLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAVVDS 121

Query: 139 IAAALILQEVLDRIS 153
           +AA +ILQ  LD   
Sbjct: 122 VAAVIILQNYLDYRR 136


>gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like
           [uncultured bacterium]
          Length = 161

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +    Q + +ID G + +G+A+SD     + P   +  K        L + I        
Sbjct: 7   AATKGQRLLAIDYGDRFLGVAVSDIMWHISTPLFPIDSKSCN-AFQALGALIDQHACGGI 65

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G P+NMNGSEGP     R F   +      +P   +DERL+TV+A++ +++ ++SRKK
Sbjct: 66  VVGYPINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKK 125

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           R QKVDS+AA+ +LQ  LD + 
Sbjct: 126 RKQKVDSLAASYVLQGTLDYLR 147


>gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           35/02]
 gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           DGI18]
 gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           FA6140]
 gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           FA19]
 gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           MS11]
 gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID18]
 gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID1]
 gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID24-1]
 gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           PID332]
 gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           DGI2]
 gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 151

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E    H +R F   + + +  +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHADGTEHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL   L+
Sbjct: 124 VLDQVAAQAILHGFLE 139


>gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase
 gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 139

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GTK IG+AI       A        ++      ++   ++       ++GL
Sbjct: 3   NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L +    +      
Sbjct: 63  PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD+ +A +IL+   +
Sbjct: 122 VDAASAVIILESWFE 136


>gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 136

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+KRIG+A  D     A     + R    Q   +    +   ++   ++GLP +M
Sbjct: 1   MGLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ G +    + +   +    + +P  + DERLT+  A+Q+L    +S  +    +D  
Sbjct: 61  NGTLGFQARQVQKYARRL-SAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRK 119

Query: 140 AAALILQEVLD 150
           AAA+ILQ+ LD
Sbjct: 120 AAAIILQQWLD 130


>gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 162

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           L  +L P  P+ +ID GTK +G+A+S+  R    P   + R+K TQ A  LL+       
Sbjct: 4   LDPALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERAC 63

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              I+GLPL+M+G +G R  S+R+FV N++  +  +P  + DERL+T +A + LI+  V 
Sbjct: 64  VGLIVGLPLHMHGGDGRRAQSSRSFVTNLLRLR-DLPVAYQDERLSTFAATESLIEAGVK 122

Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
              R   VD+ AAA+IL+  + RI+
Sbjct: 123 PSHRKDFVDAQAAAVILESAIGRIN 147


>gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
           ATCC 33393]
 gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
           ATCC 33393]
          Length = 139

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG A+       A   P    +        +   I        ++GLPL
Sbjct: 4   TVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     + F + +  R   +P    DERLTT  A+  +      R     KVD
Sbjct: 64  NMDGTEQPLTLRAKKFANRLHGR-FNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVD 122

Query: 138 SIAAALILQEVLDR 151
            I+A LIL+   ++
Sbjct: 123 GISACLILESWFEQ 136


>gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
 gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
          Length = 141

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           + P   I +ID G KR G+A+SD  +  A+    +   ++      +  +I  E +   I
Sbjct: 1   MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERII 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP  MN      + +   FV ++      +P  + DER T+V A + +++  + +K R
Sbjct: 58  IGLPKQMNNEVSENMKNIEPFVRSLKKCYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117

Query: 133 IQK--VDSIAAALILQEVLDRISF 154
             K  VD I+A +ILQ  L+   F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141


>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 156

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ +ID G+K++G+A+S+  R  A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
           + I    +   +IGLP++M+G+   + +    F   + +   + +P    DERLTT +A 
Sbjct: 61  NIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAAN 120

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
             L    V RK R    D++AA++IL+ VLD I  L
Sbjct: 121 NFLKSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156


>gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 137

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I + D GT  IG A+       A   P    +       ++   I        ++GLP
Sbjct: 3   RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE P     + F + + + +  +     DERLTTVSA+  + +    +  +  KV
Sbjct: 63  LNMDGSEQPLTQRAKKFANRL-NGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKV 121

Query: 137 DSIAAALILQEVLD 150
           DSI+A LIL+   +
Sbjct: 122 DSISACLILESWFE 135


>gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis
           L2TR]
 gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase
 gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR]
          Length = 144

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              +   D GTK IG+A+       A P   +  K+       +            ++GL
Sbjct: 1   MSTVIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     + F + +  R   +P  F DERLT+ SA++ L      RK +   
Sbjct: 61  PLNMDGTEQPLTQKAKKFGNRLHGR-FGLPVAFQDERLTSTSARESLFAEGGFRKLKKGA 119

Query: 136 VDSIAAALILQEVLD 150
           VDS AA +I+++ ++
Sbjct: 120 VDSQAALIIVEDFMN 134


>gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC
           367]
 gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase
 gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367]
          Length = 145

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+A+SD     A     +   +  +      +   I + ++  F++GL
Sbjct: 2   KLMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  +++ +  +M+  +  +P  F DERLTTV A+++L++  + SR+KR Q
Sbjct: 62  PKNMNNSLGPRAEASKRYG-DMLTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRKQ 120

Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
            +D +AA LILQ  LDR   L   K
Sbjct: 121 VIDKLAAGLILQNYLDRHGKLTREK 145


>gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           Z2491]
 gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase
 gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 151

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G++    H +R F   + + +  +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL    +
Sbjct: 124 VLDQVAAQAILHGFFE 139


>gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
           Ellin345]
 gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase
 gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
           Ellin345]
          Length = 153

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  I ++D GT+RIGLA+SDP    A     L+RK        L S I    I   ++GL
Sbjct: 8   HGRILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGL 67

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL ++G++       R F    ++++  +P   WDER T+V A ++L +  +S KKR + 
Sbjct: 68  PLRLSGADSSSTEKAREFAA-WLEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEA 126

Query: 136 VDSIAAALILQEVLDR 151
           VD ++A LILQ  L+R
Sbjct: 127 VDRLSAVLILQAFLER 142


>gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
 gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
          Length = 158

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D     +HP   +      +    +   I        ++G
Sbjct: 5   PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   D
Sbjct: 124 VLDQVAAQAILQGFFD 139


>gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis
           MR-1]
 gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase
 gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis
           MR-1]
          Length = 141

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D GTK IG+A+       A P   +          E+   I        ++GLP
Sbjct: 4   KTVLGFDFGTKSIGVAVGQQITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E    H  R F + + + K  V     DERLTT  A+  L ++   +     +V
Sbjct: 64  LNMDGTEQEMTHRARKFANRL-NAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKGQV 122

Query: 137 DSIAAALILQEVLDR 151
           D+++A LI++   + 
Sbjct: 123 DAVSAVLIIESYFEN 137


>gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
          Length = 140

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I ++D+G +RIG+A+SD       P   + R K  +   +++  I   +I   + GL
Sbjct: 3   EKRILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P NM+G+ G +   T  FV  +       +  VF DERL+T SA+Q++    V +K +  
Sbjct: 63  PKNMDGTVGFQGEKTMQFVEQLQQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKN 122

Query: 135 KVDSIAAALILQEVL 149
            +D+IAA  IL+  L
Sbjct: 123 MIDTIAAVFILETYL 137


>gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
           str. Madrid E]
 gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase
 gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii]
 gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia
           prowazekii Rp22]
          Length = 156

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN+P+ +ID G+K+IG+A+SD     A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   +IGLP++M+G    + +    F   +  + + +P    DERLTT SA  
Sbjct: 61  NIIKKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAEKL-KQSLGLPIYLQDERLTTKSANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L    + RK R    D++AA++IL+ VL+ I   
Sbjct: 120 FLKSFGIKRKDRNHNDDAVAASMILEIVLNAIKRF 154


>gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
           M045]
 gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
           M045]
          Length = 154

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 63/146 (43%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F   +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 62  LPRSLKGGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+      SS G
Sbjct: 122 VIDQAAAVIILQQALESERVSGSSPG 147


>gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus
           ATCC 25745]
 gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase
 gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745]
          Length = 146

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+++SD     A     +   +  +      +   +   ++  F++GL
Sbjct: 2   RLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN +EGPRV + R +   +++    +P  F DERLTTV A+++LI+  + SR KR +
Sbjct: 62  PKNMNNTEGPRVEAARNYG-KLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA+LIL+  L+
Sbjct: 121 VIDKLAASLILENYLN 136


>gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis
           053442]
 gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase
 gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis
           053442]
          Length = 151

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G++    H +R F   + + +  +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL    +
Sbjct: 124 VLDQVAAQAILHGFFE 139


>gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae
           WPP163]
 gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163]
          Length = 139

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GTK IG+AI       A        ++      ++   ++       ++GL
Sbjct: 3   NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L +    +      
Sbjct: 63  PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD+ +A +IL+   +
Sbjct: 122 VDAASAVIILESWFE 136


>gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 139

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG A+       A   P    +        +   I     A  ++GLPL
Sbjct: 4   TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     + F   +  R   +P    DERLTT  A+  +      R     KVD
Sbjct: 64  NMDGTEQPLTLRAKKFAKRLHGR-FNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVD 122

Query: 138 SIAAALILQEVLDR 151
            I+A LIL+   + 
Sbjct: 123 GISACLILESWFEN 136


>gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor
           A3(2)]
 gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase
 gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 167

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 ++D+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 15  RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F   +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 75  LPRSLKGGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 134

Query: 135 KVDSIAAALILQEVL--DRISFLESSKG 160
            +D  AA +ILQ+ L  +R+S     +G
Sbjct: 135 VIDQAAAVIILQQALESERVSGRPPGEG 162


>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
 gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
          Length = 139

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +DLG K IG+A+SDP    A     + RKK +    +L+  I  + +   IIGL
Sbjct: 1   MSRIMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NMN + GP+     +FV +++ +   +   + DER+TT+ + Q+L+DMNV+ K R + 
Sbjct: 61  PKNMNNTLGPQAMKVISFV-DLLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKY 119

Query: 136 VDSIAAALILQEVLDRIS 153
           VD IAA+ ILQ  LD  +
Sbjct: 120 VDKIAASFILQTYLDGRN 137


>gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 139

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +  A+    +      Q    +L ++  E +   I+G 
Sbjct: 1   MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  E   + +   FV+ +  +   +P  F DER T+V A Q ++D  + +K R  K
Sbjct: 58  PKQMNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD I+A +ILQ  L+   ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139


>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
           43243]
          Length = 139

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D GTK +G+A++DP      P   + R    K+  T   +   I   ++   ++G
Sbjct: 2   RILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+EG R   +R F  +M++R+  +  V  DERLTTV A++IL    V+RK   +
Sbjct: 62  LPLNMDGTEGERAACSREFG-DMLERRTGLQVVMTDERLTTVEAEEILETCKVARKDYKK 120

Query: 135 KVDSIAAALILQEV 148
            VDS+AA LIL++ 
Sbjct: 121 YVDSVAAVLILEDY 134


>gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM
           9187]
 gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187]
          Length = 146

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ +   D GTK IG+A        A P   L   +      ++   +        I+GL
Sbjct: 6   NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F   +  R       F DERLTT  A+  L +    R     +
Sbjct: 66  PLNMDGTEQEMTQRARKFGQRLHGR-FGFQVEFKDERLTTTDAKARLFEHGGYRALGKSR 124

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LIL+  ++ 
Sbjct: 125 VDAVSAQLILESWMES 140


>gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 141

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      +    +L ++  E +   ++GL
Sbjct: 1   MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVAKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +     FV ++  +   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138


>gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC
           23330]
          Length = 151

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                  + D G +RIG+A  +     AHP   +  +       ++   I     +  ++
Sbjct: 5   PTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPSCLVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +++G+E       R F   +  R   +P  + DERL++V A+++L    V  +K+ 
Sbjct: 65  GLPSHLDGTEHEITQLARKFGRRLHGR-FALPVYWVDERLSSVYAEELLRQAQVFGRKQK 123

Query: 134 QKVDSIAAALILQEVLDR 151
            K+D +AA  ILQ   D 
Sbjct: 124 AKLDQVAAQAILQSFFDS 141


>gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
 gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
          Length = 139

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+A+       A     L          ++   +        I+GL
Sbjct: 3   SRTLLAFDFGTKSIGVAVGQEITGTARSLASLKANDGRPDWQQIEKLLKEWQPQLVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N I  +  V     DERL+TV+A+  L +    R     K
Sbjct: 63  PLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVAAKAELFERGGYRALSKGK 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 122 VDSASAVVILESWFEQ 137


>gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
 gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
 gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
 gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
          Length = 141

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++ Q    LL ++  E +   ++GL
Sbjct: 1   MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  +   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138


>gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
 gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
          Length = 138

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +      D GTK IG+A        A P P L  +        +   +      A I+GL
Sbjct: 2   SGTFLGFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +  V  +  DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARNFANK-IHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVVILESYFEQ 136


>gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 139

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG+AI       A        ++      ++   ++       ++GL
Sbjct: 3   SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   +     DERL+TV A+  L +    +      
Sbjct: 63  PLNMDGTEQPLTARARKFANRLHGR-FGIAIELHDERLSTVEARADLFERGGFKALDKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD+ +A +IL+   +
Sbjct: 122 VDAASAVIILESWFE 136


>gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
 gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
          Length = 155

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +         +  ID GTKR+GLAIS P +  A P   + R +  Q + ++        +
Sbjct: 1   MSSDFPETGTLLGIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRV 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP++M+GSEG +    R F  +       +P ++WDER T+  A   L    +S
Sbjct: 61  KGLVVGLPVHMSGSEGGKAKEARVFG-DWCGEITQLPVIYWDERFTSALADNHLRQSTMS 119

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
           + KR + +D +AA ++LQ  L+
Sbjct: 120 QAKRKKHLDKLAAQVMLQSFLE 141


>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
           Yqgf From Escherichia Coli, A Hypothetical Protein
 gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
           Yqgf From Escherichia Coli, A Hypothetical Protein
          Length = 138

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+A+       A P P +  +  T     +   +        I+GL
Sbjct: 2   SGTLXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLN +G+E P     R F  N I  +  V     DERL+TV A+  L +    R     K
Sbjct: 62  PLNXDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESYXEQ 136


>gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
           17393]
 gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
           17393]
          Length = 140

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      +    +L ++  E +   ++GL
Sbjct: 1   MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVGKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +     FV  +  +   +P  + DER T+V A + + +  + +K R  K
Sbjct: 58  PKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD I+A +ILQ  L+   F+
Sbjct: 118 ALVDEISATIILQSYLENKRFI 139


>gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
 gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
          Length = 154

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 63/146 (43%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R FV  +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 62  LPRSLKGGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+       + G
Sbjct: 122 VIDQAAAVIILQQALESERVSGKAPG 147


>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
           43160]
 gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
           43160]
          Length = 222

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 64/131 (48%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID+GT R+G+AISDP    A P   + R +       + + +    +   I+G P ++
Sbjct: 86  LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHL 145

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+ G      RA+   +  R   VP    DERL+TV+A   L    +  +++   +D  
Sbjct: 146 SGASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQA 205

Query: 140 AAALILQEVLD 150
           AA +ILQ  LD
Sbjct: 206 AAVVILQAYLD 216


>gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
           AMMD]
 gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
           MC40-6]
 gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase
 gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase
 gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD]
 gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6]
          Length = 149

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  +   D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R + +D+ AA +ILQ+ LD++S  E  
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149


>gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
 gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
          Length = 141

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      +    +L ++  E +   ++GL
Sbjct: 1   MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVAKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +     FV ++  +   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138


>gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638]
 gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase
 gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638]
          Length = 138

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTK IG+AI       A P   +  +  T     +   +      A I+GL
Sbjct: 2   SGTLLAFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F +  I  +        DERL+TV A+  L +    R      
Sbjct: 62  PLNMDGTEQPLTARARKFANK-IHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGS 120

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   ++
Sbjct: 121 VDSASAVIILESFFEQ 136


>gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
 gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
          Length = 155

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  D     +HP   +      +    +   I        ++G
Sbjct: 5   PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   D
Sbjct: 124 VLDQVAAQAILQGFFD 139


>gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
           Pf0-1]
 gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase
 gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens
           Pf0-1]
          Length = 145

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  +PF   DERLTT  A+ + L+        R   VD
Sbjct: 66  MDGTPSEMCARAEKFARRL-NGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFLESS 158
           +IAAAL+LQ  LD  + L  S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145


>gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC
           8482]
 gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510]
 gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
 gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase
 gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482]
 gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510]
 gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
          Length = 139

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +  A+    +      Q    +L ++  E +   I+G 
Sbjct: 1   MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  E   + +   FV+ +  +   +P  F DER T+V A Q ++D  + +K R  K
Sbjct: 58  PKQMNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD I+A +ILQ  L+   ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139


>gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira
           defluvii]
 gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 203

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
             Q I +ID G+KRIG A+SD     A P     R+        +   +    +   ++G
Sbjct: 2   KGQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +PL ++G  GP       F+  +++  + VP + WDER+TT +A+ +LI  +V R+KR  
Sbjct: 62  MPLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD IAAA++LQ  L  +
Sbjct: 121 IVDRIAAAILLQSYLASL 138


>gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 143

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+A+       A P P L  +        +            ++GL
Sbjct: 6   SRTVLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R   V     DERLTT  A+ +L ++   +K    K
Sbjct: 66  PLNMDGTEQEMTQRARKFANRLHGR-FRVAVETCDERLTTTDAKSMLFELGGYKKLTKDK 124

Query: 136 VDSIAAALILQEV 148
           VDS++A +I    
Sbjct: 125 VDSVSACVIFASW 137


>gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella
           insecticola LSR1]
 gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella
           insecticola LSR1]
          Length = 140

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG+AI       A     L  +      L++   +        ++GL
Sbjct: 3   NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV+A+  L +    R      
Sbjct: 63  PLNMDGTEQPLTSRARKFANRLHSR-FNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +AA+IL    ++
Sbjct: 122 VDAASAAVILCSWFEQ 137


>gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 140

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG AI       A P       + +    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGAAIGQEVTGTARPLASFKANEGSPDWSKIEKMLKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F  N I  +  V     DERL+TV A+  L      R      
Sbjct: 63  PLNMDGTEQPVTAQARKFA-NRIHGRFGVQVALHDERLSTVEARAHLFAGGGYRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDAASAVIILESWFEQ 137


>gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 139

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG+AI       A        ++      ++   ++       ++GL
Sbjct: 3   SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E P     R F + +  R   V     DERL+TV A+  L +    +      
Sbjct: 63  PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121

Query: 136 VDSIAAALILQEVLD 150
           VD+ +A +IL+   +
Sbjct: 122 VDAASAVIILESWFE 136


>gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
 gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
          Length = 165

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 1/159 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+   I    ++ +    +  +DLGTK IG+A+SD GR+ A P   + R K T  A  ++
Sbjct: 1   MNRDEIAAFAEASRGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIV 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +      +   +IGLPLNM+GSEGPR  S+R+F  N+         +F+DERL+T +  +
Sbjct: 61  ALCAAHGVGGLVIGLPLNMDGSEGPRAQSSRSFARNLRPLLPLP-VLFFDERLSTAAVTR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
            L++ + SR +R + VD +AAA ILQ  LD +  + S  
Sbjct: 120 TLLEADASRARRGEVVDKLAAAYILQSCLDVMGGMFSGA 158


>gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
 gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
          Length = 246

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +  I  L   L+ +Q +  +D G K IG+A+SD G   A P   L R K++  A ++ 
Sbjct: 84  MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +    +++   ++GLPL+++GS GP   + R +  N+ +    +P   WDERL++ +  +
Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDWTLNLSE-LTGLPAAMWDERLSSSAVNR 202

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
            LI + +++R++R   VD +AAA ILQ  LD
Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233


>gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
           27560]
 gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
           27560]
          Length = 142

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G+K +G+A++DP    A     + R    K+ +T   +   +   NI   ++G
Sbjct: 2   RILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            P+ ++G+EG RV  T+ F   M++R+  +  VF DERLTTV A +I+ +  + ++ R +
Sbjct: 62  YPVMLSGTEGERVKKTKEFGA-MLERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRYK 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD IAA +IL++ ++RI
Sbjct: 121 YVDQIAATIILEDYINRI 138


>gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis
           URRWXCal2]
 gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase
 gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
          Length = 154

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++    L PN P+ +ID G+K++G+A+S+  R  A P   ++          LL
Sbjct: 1   MIIKNLQEFYPLLIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           S I    +   +IGLP++M+G+   + +    F   +    + +P    DERLTT +A  
Sbjct: 61  SIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L    V RK R    D++AA++IL+ VLD +  L
Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSMKKL 154


>gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
           23685]
 gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
           23685]
          Length = 140

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GT+ IG AI       A P       +      ++   +        ++GL
Sbjct: 3   SRTLLAFDFGTRSIGCAIGQELTGSARPLQSFKANEGIPDWQQIEKVLREWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L      R     +
Sbjct: 63  PLNMDGSEQPLTQLARKFANRLHGR-FGVQIALHDERLSTVEARAHLFADGGYRALEKGR 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +AALIL+   D 
Sbjct: 122 VDAASAALILESWFDN 137


>gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514]
 gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514]
          Length = 138

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID GTKRIGLAISD     A P  F++ +      + L   I  + +   ++G+P 
Sbjct: 3   RILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPR 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS GP     + FV  + D  V +P   WDERLT+  A + LI  +V R KR +KVD
Sbjct: 63  NMDGSYGPAALKVQEFVTVLKD-SVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEKVD 121

Query: 138 SIAAALILQEVLDRIS 153
             AAA++LQ  LD  +
Sbjct: 122 KTAAAILLQSYLDSFA 137


>gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena
           CCY9414]
 gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena
           CCY9414]
          Length = 156

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G KR+G+A  D     A     + R    +   ++ + +    +   +IGLP +M
Sbjct: 14  LGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVIGLPYSM 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+ G +    + F   +  + + +P  + DERLT+  A+Q+LI  N S  +    +D  
Sbjct: 74  DGTLGFQARQVQKFAKRL-GKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132

Query: 140 AAALILQEVLDRISF 154
           AA++ILQ+ LD    
Sbjct: 133 AASIILQQWLDSRRA 147


>gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae
           MTU5]
 gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia
           massiliae MTU5]
          Length = 165

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ +ID G+K++G+A+S+  R  A P   +           LL
Sbjct: 12  MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVITSLL 71

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   IIGLP+NM+G+   + +    F   +    + +P    DERLTT +A  
Sbjct: 72  NIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAEELAK-SINLPIYLQDERLTTKAANN 130

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L    V RK R    D++AA++IL+ VLD I  +
Sbjct: 131 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 165


>gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
 gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
 gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 139

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +  A+    +      Q    +L ++  E +   I+G 
Sbjct: 1   MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  E   + +   FV+ +  +   +P  F DER T+V A Q ++D  + +K R  K
Sbjct: 58  PKQMNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD I+A +ILQ  L+   ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139


>gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase
 gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 140

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   +          ++   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R       F DERLTT  A+  L +    +      
Sbjct: 63  PLNMDGTEQEITVRARKFGNRLHGR-FGKQVEFKDERLTTTDARARLFERGGYKALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD ++A LIL+  ++ 
Sbjct: 122 VDGVSAQLILEAWMEE 137


>gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
           4113]
 gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
           4113]
          Length = 154

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 1/148 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++  + I +ID+G  RIG+A  DP    A P   +  + +      L + +        +
Sbjct: 1   MRRGRRI-AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVV 59

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP +++G EGP     R F   +  R   VP    DER+TTV+A Q L    V+ KK 
Sbjct: 60  VGLPRSLSGREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKG 119

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
              VD  AA +ILQ  L+       + G
Sbjct: 120 RSVVDQAAAVVILQSALETERVSGRAPG 147


>gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
 gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
          Length = 142

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+    + D G +RIG+A+ +     AHP   +  +   Q    +   I     A  ++G
Sbjct: 2   PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E      +R F + +  R   +P    DER T++ A+ +L +  V  +K+  
Sbjct: 62  LPVHADGTEHDLTRLSRRFANRLKGR-FGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA  ILQ   ++
Sbjct: 121 ALDQVAAQAILQTWFEQ 137


>gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
          Length = 143

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +     K +    ++   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+GS G  V  ++ +   + ++   +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137


>gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
 gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
          Length = 138

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I + D GTK IG+A+       A P   +  +       E+ + +        ++GL
Sbjct: 1   MSTIMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G++     + R F + +  R   +  +  DERLTTV A+  L +    R  +  +
Sbjct: 61  PLNMDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQ 119

Query: 136 VDSIAAALILQEVLDRI 152
           VD++AAALIL+   + +
Sbjct: 120 VDALAAALILESYFETL 136


>gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis
           M01-240013]
 gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
 gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 151

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G++    H +  F   + + +  +P  + DERL++V A+ +L +  V  KKR  
Sbjct: 65  LPVHTDGTKHEMTHLSHKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  IL    +
Sbjct: 124 VLDQVAAQAILHGFFE 139


>gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2]
 gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
 gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
 gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 138

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  +I  E +   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT]
 gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336]
 gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase
 gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase
 gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus
           129PT]
 gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336]
          Length = 141

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG A+       A   P    +      L++   +        ++GLPL
Sbjct: 4   TVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSE    H  R F + + + +  V     DERLTT  A+  +      R  + +KVD
Sbjct: 64  NMDGSEQDLTHLARKFANRL-NGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVD 122

Query: 138 SIAAALILQEVLDR 151
           SI+A LIL+   + 
Sbjct: 123 SISACLILESWFEN 136


>gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus
           amylolyticus DSM 11664]
          Length = 142

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISD     A     +     K       L   +   + A F++GL
Sbjct: 2   RLIGLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+G+ G  V  ++A+   +  +K  +P  + DERLTTV ++++L+ +  V  RKKR 
Sbjct: 62  PKNMDGTSGHSVDRSKAYGERL-KKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 139

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG A+       A   P    +        +   I     A  ++GLPL
Sbjct: 4   TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     + F   +  R   VP    DERLTT  A+  +            KVD
Sbjct: 64  NMDGTEQPLTLRAKKFAKRLHGR-FNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVD 122

Query: 138 SIAAALILQEVLDR 151
            I+A LIL+   + 
Sbjct: 123 GISACLILESWFEN 136


>gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas
           tunicata D2]
 gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas
           tunicata D2]
          Length = 149

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +   D GT+ IG+A+       A P   +  +       E+ + +        ++GL
Sbjct: 11  ERTVLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGL 70

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+        + F + + +    +P    DERLTT  A+  L      +K     
Sbjct: 71  PLNMDGTNQEVTFQAKKFANRLHN-NYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGN 129

Query: 136 VDSIAAALILQEVLDR 151
           VDS++A LIL+   + 
Sbjct: 130 VDSMSALLILESYFEN 145


>gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 142

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     A     +   +         L   +   +   F++GL
Sbjct: 2   RLLGLDVGSKTVGVAVSDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + + K  +P  + DERLTT+ +Q++L++   +  RKKR 
Sbjct: 62  PKNMDGTSGSSVARSKAYGKRL-EEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase
 gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 140

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   +          ++   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R       F DERLTT  A+  L +    R      
Sbjct: 63  PLNMDGTEQEITVRARKFGNRLHGR-FGKQVEFKDERLTTTDARARLFERGGYRALEKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD ++A LIL+  ++ 
Sbjct: 122 VDGVSAQLILEAWMEE 137


>gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 141

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++ Q    LL ++  E +   ++G 
Sbjct: 1   MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGF 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  +   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138


>gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
           43183]
 gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
 gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
           43183]
 gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
          Length = 141

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      +    ++ ++  E +   ++GL
Sbjct: 1   MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFIMDYVAKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +     FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENRRF 138


>gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
           23834]
 gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
           23834]
          Length = 148

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+    + D G  RIG+A  D     AHP   +  +   +    + + +       F++G
Sbjct: 5   PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +GSE       R F H + + +  +P  + DERLT++ A ++L    +  +K+  
Sbjct: 65  LPFSTDGSEHEMTRLARKFGHRL-NGRFGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
 gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
          Length = 149

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R + +D+ AA +ILQ+ LD++S  E  
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149


>gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
 gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
          Length = 140

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 3/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFII 73
            + I  +DLG++  G+AISDP    A        K       A  + + +   NI   ++
Sbjct: 1   MEKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +MNG  G R   +  F   + ++ + V  +  DERLTTV  +  LI  +VSRKKR 
Sbjct: 61  GLPKHMNGDLGERAQISIDFKERL-EKMMDVEVILVDERLTTVMMENQLIFADVSRKKRK 119

Query: 134 QKVDSIAAALILQEVLDRIS 153
           + +D +AA  ILQ  LD   
Sbjct: 120 EVIDKLAAVQILQGYLDSQR 139


>gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
 gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
          Length = 158

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+KRIGLA  D     A     + RK   +   ++   +    +   ++GLP  M
Sbjct: 14  LGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQIVNARRVQVLVVGLPYAM 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F H +  + + +P  + DERLT+  A+Q+LI  N S  +    +D  
Sbjct: 74  DGSLGFQARHVQKFTHRLA-QALKLPVEYVDERLTSYQAEQLLIAENRSPSRHKGLIDRK 132

Query: 140 AAALILQEVLD 150
           AAALILQ+ LD
Sbjct: 133 AAALILQQWLD 143


>gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
           15897]
          Length = 140

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
            + I  +DLG++  G+AISD     AH             + A  + + +   NI   ++
Sbjct: 1   MEKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +MNG  G R   +  F   + ++ + V  +  DERLTTV A   LI  +VSRKKR 
Sbjct: 61  GLPKHMNGDLGERAQISIDFKERL-EKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRK 119

Query: 134 QKVDSIAAALILQEVLDRIS 153
           Q VD +AA  ILQ  LD+I 
Sbjct: 120 QVVDKMAAVEILQGYLDKIR 139


>gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
 gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
          Length = 138

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  +I  E +   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
 gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
          Length = 140

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   L          E+   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G++       R F + +  R    P  F DERLTT  A+  L +    R      
Sbjct: 63  PLNMDGTDQEITVRARKFGNRLHGR-FGKPVEFKDERLTTTDARARLFERGGYRALEKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD ++A LI++  ++ 
Sbjct: 122 VDGVSAQLIVEAWMEE 137


>gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533]
 gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
 gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
          Length = 143

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +     K +    ++   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+GS G  V  ++ +   + ++   +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137


>gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           WCFS1]
 gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           JDM1]
 gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase
 gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus
           plantarum WCFS1]
 gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           JDM1]
 gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 144

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G++ +G+AISD     A     +   +  +      +   +   +   F++GL
Sbjct: 2   KLMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN + GPR  + + +   ++  + ++P  F DERLTTV A+++L++  N SRKKR +
Sbjct: 62  PKNMNNTLGPRAEAAQHYGE-LLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRKK 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA+LILQ  LDR   L
Sbjct: 121 VIDKLAASLILQNYLDRHGKL 141


>gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
 gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1]
 gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
 gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase
 gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
 gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1]
 gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
          Length = 143

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +     K +    ++   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+GS G  V  ++ +   + ++   +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKEK-FDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KVIDQMAAVLILQSYLE 137


>gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
 gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
          Length = 138

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  ++  E +   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNF---IGEYVAKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
 gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
          Length = 138

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  +I  E +   I+GL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGDYIAKEPVERIIVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + + +  + +K R  K
Sbjct: 58  PRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
           FI9785]
 gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
           FI9785]
          Length = 143

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +     K +    ++   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+GS G  V  ++ +   + ++   +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGGRLKEK-FDLPVYYVDERLTTVQADRILVEEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137


>gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102]
 gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102]
          Length = 151

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+A  +     +HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680]
 gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase
 gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 156

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 63/146 (43%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 ++D+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 4   RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     RAF   +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 64  LPRSLKGGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRS 123

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+       + G
Sbjct: 124 VIDQAAAVIILQQALESERVSGKAPG 149


>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
 gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
          Length = 143

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +     K +    ++   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+GS G  V  ++ +   + ++   +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGHSVERSKQYGERLKEK-FDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KVIDQMAAVLILQSYLE 137


>gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
           10712]
          Length = 156

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 1/149 (0%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +++  + I ++D+G  RIG+A  DP    A P   +  + V      L   +        
Sbjct: 2   TMRRGRRI-AVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEV 60

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP +++G EGP     RAF   M      VP    DER+TTV+A Q L    V  KK
Sbjct: 61  VVGLPRSLSGREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKK 120

Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160
               +D  AA +ILQ  L+      +  G
Sbjct: 121 GRSVIDQAAAVIILQNALEAERVSGNPPG 149


>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 143

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISDP    A     +     K +    ++   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+GS G  V  ++ +   + ++   +P  + DERLTTV A +IL+ +  V  R +R 
Sbjct: 62  PKNMDGSSGRSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137


>gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
           ATCC 33394]
 gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
           ATCC 33394]
          Length = 159

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +       + D G  RIG+A  +     AHP   +      +   ++   I        +
Sbjct: 4   IPKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPEYLV 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP +++G+E       R F   +  R    P  + DERL++V A+++L +  V  KK+
Sbjct: 64  VGLPTHIDGTEHEMTRLARQFGRRLHGR-FGKPVYWVDERLSSVYAEELLREAAVFGKKQ 122

Query: 133 IQKVDSIAAALILQEVLDR 151
              +D +AA  IL    D 
Sbjct: 123 KPVLDQVAAQAILHYFFDN 141


>gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 143

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
            + I  +D G+K IG+AISD     A P   + R    K+ ++   +   +  ++I   +
Sbjct: 2   KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP+NM+G  G R   T  FV  +   +V +P V  DERLTTV A +IL +  V ++ R
Sbjct: 62  VGLPINMDGRSGERAALTLEFVEKL-KLRVDIPIVMQDERLTTVEADEILDESGVKKQDR 120

Query: 133 IQKVDSIAAALILQEVLDRIS 153
            Q +D IAA +IL+E +++ +
Sbjct: 121 KQFIDQIAAGIILKEYMEKEN 141


>gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis
           Bu]
          Length = 149

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 1/144 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            +  + + D G KRIG+AI +   R A     +           +   +      A ++G
Sbjct: 7   RDATLMAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        + F + + + +  +P  + DER ++V A+  L + +V  + R  
Sbjct: 67  LPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAG 125

Query: 135 KVDSIAAALILQEVLDRISFLESS 158
            +D+ AA +ILQ+ LD++S  E  
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149


>gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246]
 gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
           Rustic]
 gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase
 gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246]
 gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
           Rustic]
          Length = 154

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ +ID G+K++G+A+S+  R  A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   IIGLP++M+G+   + +    F   +    + +P    DERLTT +A  
Sbjct: 61  NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +L    V RK R    D++AA++IL+ VLD I  +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154


>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
           17241]
 gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
           17241]
          Length = 142

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D G  R GLA  D     A P   L  K       ++ +  +  ++   I+G P+
Sbjct: 2   KILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+EGPR      F   +    V VP   WDER TTVSA   L   N   KKR + +D
Sbjct: 62  NMNGTEGPRAQLCADFAGQLAK-LVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVID 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA +IL+  L+   
Sbjct: 121 EVAATIILESYLNYRR 136


>gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus
           succinogenes 130Z]
 gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase
 gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z]
          Length = 140

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + + D GTK IG A+       A   P    +       ++   +        ++GL
Sbjct: 2   GMTVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPDWADIEKCLKEWKPDMVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F H + + +  V   + DERLTT  A+  + +    R  +  K
Sbjct: 62  PLNMDGTEQDLTRRARKFGHRL-NGRFGVKVAWQDERLTTTQARTEIFERGGYRALKKGK 120

Query: 136 VDSIAAALILQEVLDR 151
           VDSI+A LIL+   + 
Sbjct: 121 VDSISACLILESWFEE 136


>gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
 gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
          Length = 163

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 11  RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F   +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 71  LPRSLKGGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 130

Query: 135 KVDSIAAALILQEVL--DRISFLESSKG 160
            +D  AA +ILQ+ L  +R+S     +G
Sbjct: 131 VIDQAAAVIILQQALESERVSGRPPGEG 158


>gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 144

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGL 75
             I  +DLG+K  G+A+SD    +AHP   L  K  + +    L S I  E +    +G 
Sbjct: 3   GKIIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN   G R   +  F   + +       V  DERLT+V A + LID +VSRKKR + 
Sbjct: 63  PKMMNNDVGERAQISEEFKKTL-ESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKV 121

Query: 136 VDSIAAALILQEVLDRISFLESS 158
           VD +AA  ILQ  LD+  F+E +
Sbjct: 122 VDQLAAVHILQTYLDKRRFMEGN 144


>gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5]
 gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase
 gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae
           ESF-5]
          Length = 154

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ +ID G+K++G+A+S+     A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   IIGLP++M+G+   + +    F   +    + +P    DERLTT +A  
Sbjct: 61  NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +L    V RK R    D++AA++IL+ VLD I  +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154


>gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans
           OS217]
 gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase
 gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217]
          Length = 141

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           NQ +   D GTK IG+A+       A P   L  +       E+   I        ++GL
Sbjct: 4   NQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGL 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F  N I  +  V  +  DERLTT  A+  L ++   +     +
Sbjct: 64  PLNMDGTEQDITQRAKKFA-NRISGRFGVKVLTQDERLTTADAKARLFELGGYKALTKGQ 122

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 123 VDAVSAVLIIESYFEN 138


>gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
 gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
          Length = 152

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D GT RIG+A+       A P   +  +        +   +       F++GLP
Sbjct: 15  RTLLGFDFGTTRIGIAVGQEITATATPINPIKARDGIPNWDTIAEVVKEWQPDGFVVGLP 74

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E       R F + +  R    P    DERL++  A+  +I    +R  +   V
Sbjct: 75  LNMDGTENEMCQRARKFANRLHGR-YNKPSYMMDERLSSYEAKGQVIKEGGNRNFKANSV 133

Query: 137 DSIAAALILQEVL 149
           D +AA +IL+   
Sbjct: 134 DGLAAQMILESWF 146


>gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
 gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase
 gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM]
 gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
          Length = 142

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISD     A     +   +         L   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + + K  +P  + DERLTT+ ++++LI+   +  RKKR 
Sbjct: 62  PKNMDGTSGNSVARSKAYGKRL-EEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 153

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +  I +L  +L+P Q +  ID G K IG+A+SD     A P   + R+K++  A E+ 
Sbjct: 1   MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                 ++ A + GLPL+++GS GP   + R ++ N+  + V +P   WDERL++ +  +
Sbjct: 61  ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWMMNLSQQ-VGLPAAMWDERLSSSAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +LI D++++R++R Q VD +AAA ILQ  LD
Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150


>gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
           19061]
          Length = 139

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            N+ I + D GT+ IG AI       A         + +     +   +        I+G
Sbjct: 2   KNRTIIAFDFGTRSIGAAIGQEVTGTARALSAFKANEGSPNWQLIEKLLKEWQPDLVIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+E P     R F + +  R   V     DERLTTV A+  L D    +     
Sbjct: 62  LPLNMDGTEQPVTAQARKFANRLHGR-FGVQVALHDERLTTVEARSHLFDHGGYKALNKG 120

Query: 135 KVDSIAAALILQEVLDR 151
           KVD+ +A +IL+   +R
Sbjct: 121 KVDAASAVIILESWFER 137


>gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
 gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
          Length = 141

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      Q    +L ++  E +   ++GL
Sbjct: 1   MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTH---QLLTFILDYVAKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  +   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENRRF 138


>gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
 gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase
 gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
          Length = 141

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             + ++D+G +RIG+A+SDP R  A P   +     +     +L+ I    + A ++GLP
Sbjct: 6   GRVMALDVGERRIGVALSDPTRMLASPLTTIRAVPRSTALKRILTLIRDYQVTALVVGLP 65

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L MNG  GP+    + FV  +    + +P  F DERLTTV+A++++ID+ +  ++R  ++
Sbjct: 66  LTMNGDIGPQATLVQQFVDEL-RPLIDIPIFFVDERLTTVAAERMMIDLKIKPEQRRARI 124

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA++ILQ+ LD   
Sbjct: 125 DEVAASIILQDFLDSQR 141


>gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120]
 gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC
           29413]
 gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase
 gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase
 gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120]
 gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413]
          Length = 151

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KR+G+A  D     A     + R    +   ++ + +    +   ++GLP +M
Sbjct: 8   LGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSM 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F   +    + +P  + DERLT+  A+Q+LI  NVS  +    +D  
Sbjct: 68  DGSLGFQARQVQKFTSRLAKA-LQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRK 126

Query: 140 AAALILQEVLD 150
           AAALILQ+ LD
Sbjct: 127 AAALILQQWLD 137


>gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 140

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      +    +L ++  E +   ++GL
Sbjct: 1   MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLTFILDYVGKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +     FV  +  +   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQSYLENKRF 138


>gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
 gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
          Length = 149

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVISNLNREHRFKAVGDLLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R + +D+ AA +ILQ+ LD++S  E  
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149


>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 158

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 1/140 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
             +  I ++D+G KRIG+A+ DP R  A  +P L  +   +   +LL  IT   +   +I
Sbjct: 5   PTHGRIIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVI 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL + G  G +  + +AF   + +++  +P   +DER T+V A++ L  M + + K  
Sbjct: 65  GLPLTLRGEVGAQAKAVQAFSRGL-EKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHR 123

Query: 134 QKVDSIAAALILQEVLDRIS 153
             VD +AA LILQ+ +  I+
Sbjct: 124 DHVDELAAILILQDYMSSIA 143


>gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica
           RCB]
 gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase
 gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB]
          Length = 146

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + + D G KRIG+A  +     AHP   +  +        +   +        ++GL
Sbjct: 1   MGTVLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P + +G+          F   +  R+  +P  F DERLT++ A+  L +   + K     
Sbjct: 61  PTHADGTPHEMTRLATKFGERLA-RRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPL 119

Query: 136 VDSIAAALILQEVLDR 151
           +D++AA LILQ   + 
Sbjct: 120 LDAVAAQLILQTWFES 135


>gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
           DSM 18315]
          Length = 140

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++D  +  A+    +   ++T+    L  +++ E +  F++GL
Sbjct: 1   MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKF---LADYVSREPVERFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  MN      +    AFV ++      +P  ++DER T+V A + ++D  + +KKR   
Sbjct: 58  PKQMNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117

Query: 134 QKVDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   +
Sbjct: 118 GLVDEISAVIILQSYLENKKY 138


>gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2]
          Length = 144

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+A+       A P   L  +        +            ++GL
Sbjct: 6   SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F + +  R   V     DERLTT  A+ +L ++   +K   +K
Sbjct: 66  PLNMDGTEQEVTQRAKKFANRLHGR-FKVAVDLCDERLTTTDAKSMLFELGGYKKLTKEK 124

Query: 136 VDSIAAALILQEVLDR 151
           +DS++A +I    ++ 
Sbjct: 125 IDSVSACVIFTSWVEN 140


>gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter
           oxydans 621H]
 gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase
 gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter
           oxydans 621H]
          Length = 160

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +    DL   L+  Q +  +D G+K IG+A++D     A P   L R+K+ + A EL 
Sbjct: 1   MPLFNPHDLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELA 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             + T+++ A ++GLPL+++GS GP   +   +   + ++ + +P   WDERL++ +  +
Sbjct: 61  KIVRTQDVGALVVGLPLSLDGSFGPAARAASDWTQALSEK-LGIPAGLWDERLSSSAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
            LI D +++R +R + VD +AAA +LQ  LD
Sbjct: 120 FLIKDADMTRGRRAEVVDKMAAAYMLQGWLD 150


>gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 149

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 10  VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
            KSLKP   + +   D GTK IG+AI       A     +  +        +   +    
Sbjct: 3   KKSLKPQGERTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDHIAVQVAEWQ 62

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               ++GLPLNM+G+        + F + + +    +P    DERLTT  A+  L +   
Sbjct: 63  PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIPVQTQDERLTTADAKARLFESGG 121

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
            +      VD+++A +IL+   + 
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145


>gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
 gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase
 gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
          Length = 158

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++  + DL  +L  N  +  +D G+K IG+A+SD GRR A P   + R K+ + A  +L
Sbjct: 1   MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                E  AA IIGLPL+M+GS GP   + R + H +  R+  +P    DERL++ +  +
Sbjct: 61  DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAHAIA-RETGLPVAMMDERLSSAAVNR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            LI+ +V+R KR  +VD+ AA+ +LQ  LD ++
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLN 152


>gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
 gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
          Length = 141

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +      Q    ++ ++  E +   ++GL
Sbjct: 1   MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTH---QLLAFIIDYVAKEPVERILVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++ ++   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138


>gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
 gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
          Length = 140

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D G  R G+AISD     A P   +      + A ++            ++GLP+
Sbjct: 2   RILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R     AF   M+   V V    WDER TTV+A Q L + NV  KKR   VD
Sbjct: 62  NMNGTKGERAEKCEAFAE-MLRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVVD 120

Query: 138 SIAAALILQEVL 149
           ++AA +IL+  L
Sbjct: 121 TVAATIILESYL 132


>gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase
 gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 138

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  ++  E +   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNF---IGGYVAKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22]
 gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22]
          Length = 138

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  ++  E +   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYMAKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383]
 gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase
 gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383]
          Length = 149

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+A+ +   R A     +           +   +     
Sbjct: 1   MSGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R + +D+ AA +ILQ+ LD++S  E  
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149


>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
 gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
 gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 139

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
            + I  +DLG++  G+AISD     AH             + A  +++ I    I   ++
Sbjct: 1   MERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +MNG  G R   +  F   +      +  V  DERLTT  AQ  LI  +VSRKKR 
Sbjct: 61  GLPKHMNGDLGERAQISIMFKEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA  ILQ  LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137


>gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
 gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
          Length = 137

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            +  +DLG++ +G+++SD     A P   +    +       ++ ++I    I   ++GL
Sbjct: 2   RVLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG  G R   +  F   +    + V  V WDERLTTV+AQ+ILI  +VSRKKR + 
Sbjct: 62  PKHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKKV 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ  LD  S
Sbjct: 120 IDQMAAVQILQGYLDSQS 137


>gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 139

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GT+ IG AI       A                ++   +        I+GL
Sbjct: 3   NRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWQQIEKLLKEWQPDLVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R   V     DERLTTV A+  L D    +     K
Sbjct: 63  PLNMDGTEQFVTIQARKFANRLHGR-FGVQVELQDERLTTVEARAHLFDRGGYKALDKGK 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDATSAVIILESWFEQ 137


>gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC
           73102]
 gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102]
          Length = 158

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G KRIG+A  D     A     + R    Q   ++   +    +   ++GLP +M
Sbjct: 14  LGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVMGLPYSM 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F   +    + +P  + DERLT+  A+Q+LI  N S  +    +D  
Sbjct: 74  DGSIGFQARQVQKFTTRLSKA-LKLPVEYVDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132

Query: 140 AAALILQEVLD 150
           AAALILQ+ LD
Sbjct: 133 AAALILQQWLD 143


>gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
 gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
          Length = 138

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP +  A+    +   ++      LL ++  E +   ++G 
Sbjct: 1   MSRILAIDYGRKRTGIAVTDPMQIIANGLTTVPTHELMDF---LLKYVAQEKVERIVVGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  MN  +   +   + FV  +  +   +P    DER T+V A Q ++D  + +K R   
Sbjct: 58  PKQMNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDK 117

Query: 134 QKVDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+    
Sbjct: 118 ALVDEISATIILQSYLESRRM 138


>gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii
           RML369-C]
 gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
           85-389]
 gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase
 gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase
 gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C]
 gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
           85-389]
          Length = 154

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ SID G+K+IG+AIS+  R  A P   +           LL
Sbjct: 1   MIINNLQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I        +IGLP++M+G +  +      F   +    + +P    DERLTT +A  
Sbjct: 61  EKIEQYKACGIVIGLPIDMSGMQTEQSAIVIKFAEELTK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L    + RK+R    D++AA++IL+ VL+ I+ L
Sbjct: 120 FLKSFGIKRKERNNNDDAVAASMILETVLNSINKL 154


>gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC
           7421]
 gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase
 gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421]
          Length = 156

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G+KRIG+A  DP    A     +VR  +      +  +I      A +IGLP 
Sbjct: 5   SVLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPR 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS GP+ H  + F   +  R + VP  + DERL+TV A + L    VS  +R   +D
Sbjct: 65  NMNGSLGPQAHRIQHFGQQLA-RVIDVPIDYVDERLSTVQAGRALQS--VSATRRKALID 121

Query: 138 SIAAALILQEVLD 150
             AAA+ILQ+ LD
Sbjct: 122 QQAAAIILQQWLD 134


>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
 gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
          Length = 160

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
            +     +L+ +  +  IDLGTK IGLAISD     + P   + R K T     +L F T
Sbjct: 8   ELAQFADALQGSGRLLGIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFAT 67

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
            E ++  +IGLPLNM+GSEGPR  S+RAF  N+  R   +P   WDE L+T  A + +  
Sbjct: 68  AERVSGIVIGLPLNMDGSEGPRAQSSRAFARNL-SRLTELPIQLWDESLSTSEALEGVSA 126

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
              ++ K   K+D++AA+LILQ   D +  L
Sbjct: 127 KKAAQMKADGKLDALAASLILQGCCDAMRAL 157


>gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
           18228]
 gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
           18228]
          Length = 142

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP +  A+    +      Q    LL ++T E++   I+G 
Sbjct: 1   MSRIIAIDYGRKRTGIAVTDPMQIIANGLTTVPTH---QLMDFLLKYVTQESVERIIVGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  +   + +   F++ +  +   +P    DER T+V A Q ++   + +K R  K
Sbjct: 58  PKQMNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD I+A +ILQ  L+    +
Sbjct: 118 ALVDEISATIILQSYLEGKRNM 139


>gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
 gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
          Length = 149

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP + +   D G+K IG+A        A P   +  +        L   I        II
Sbjct: 8   KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+G+E       + F + +  R   V     DERLTT SA++ + ++   +    
Sbjct: 68  GLPLNMDGTEQYITQRAKKFANRLHGR-FGVKIALQDERLTTASAKEFIFELGGYKALDK 126

Query: 134 QKVDSIAAALILQEVLDR 151
            K+DS++AALIL+  + +
Sbjct: 127 GKIDSVSAALILESWMSQ 144


>gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1]
          Length = 143

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+D G  R G+A+       A P   +  K   +   +  +    +     ++G P N
Sbjct: 3   IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R      F   + +    +P   WDER TTVSA   L   N   KKR   VD+
Sbjct: 63  MNGTIGERCEKCTLFAEKL-EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121

Query: 139 IAAALILQEVLDRIS 153
           +AA +IL+  L+   
Sbjct: 122 VAAVIILESYLEYRK 136


>gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
           Pf-5]
 gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase
 gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens
           Pf-5]
          Length = 145

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+GS          F   + + +  VPF   DERLTT  A+ + L         R   VD
Sbjct: 66  MDGSPSDMCVRAEKFARRL-NGRFNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD  + L
Sbjct: 125 AIAAALLLQGWLDENAGL 142


>gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans
           568]
 gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase
 gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568]
          Length = 140

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG AI       A        +  +    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQLVTEQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+   +R
Sbjct: 122 VDSASAVVILESWFER 137


>gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum
           AIU301]
 gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum
           AIU301]
          Length = 158

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++  + DL  +L  N  +  +D G+K IG+A+SD GRR A P   + R K+  +A  +L
Sbjct: 1   MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                E  AA IIGLPL+M+GS GP   + R + H +  R+  +P    DERL++ +  +
Sbjct: 61  DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAHAIA-RETGLPVAMMDERLSSAAVNR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            LI+ +V+R KR  +VD+ AA+ +LQ  LD ++
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLN 152


>gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
           str. Iowa]
 gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase
 gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase
 gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa]
          Length = 154

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ +ID G+K++G+A+S+     A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   IIGLP++M+G+   + +    F   +    + +P    DERLTT +A  
Sbjct: 61  NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +L    V RK R    D++AA++IL+ VLD I  +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154


>gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 140

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG A+     R A   P    +        +   +        ++GLPL
Sbjct: 4   TVLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E       R F + + + +  V     DERLTT  A+  + +    +     KVD
Sbjct: 64  NMDGTEQELTTRARKFANRL-NGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVD 122

Query: 138 SIAAALILQEVLDR 151
            I+A LIL+   ++
Sbjct: 123 GISACLILESWFEK 136


>gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
 gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
          Length = 139

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
            + I  +DLG++  G+A+SD     AH             Q A  ++  I    I   ++
Sbjct: 1   MEKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +MNG  G R   +  F   +  +   +  V  DERLTT  AQ  LI  +VSRKKR 
Sbjct: 61  GLPKHMNGDLGERAQISIMFKEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA  ILQ  LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137


>gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
           43184]
 gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
           43184]
          Length = 140

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++D  +  A+    +   ++T+    L  +++ E +  F++GL
Sbjct: 1   MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRF---LADYVSREPVERFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  MN      +    AFV ++      +P  ++DER T+V A + ++D  + +KKR   
Sbjct: 58  PKQMNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117

Query: 134 QKVDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   +
Sbjct: 118 GLVDEISAVIILQSYLENKKY 138


>gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
 gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
          Length = 154

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 64/146 (43%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     RAF   +      VP    DER++TV+A Q L    V+ KK   
Sbjct: 62  LPRSLGGGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ  L+      ++ G
Sbjct: 122 VIDQAAAVVILQNALESERASGAAPG 147


>gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis
           3_1_12]
 gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 138

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      + +++  E +   IIGL
Sbjct: 1   MSRIIAIDYGRKRTGIAVSDAMQIIANGLTTVPSHELLDF---ITNYVKQEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +I+  + +K R  K
Sbjct: 58  PKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  L+   
Sbjct: 118 ALVDEISATIILQSYLESKR 137


>gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii 115-3-CHN]
 gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
 gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
           JV-V16]
 gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii 115-3-CHN]
 gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
 gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
           JV-V16]
          Length = 148

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISD     A     +   +         +   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRI 133
           P NM+GS+G  V+ ++ +   + + K  +P  + DERLTT+ A ++LI+      RKKR 
Sbjct: 62  PKNMDGSDGASVNRSKNYGKRL-EEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  LD
Sbjct: 121 EVIDQMAAVLILQNYLD 137


>gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase
 gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 139

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GT+ IG AI       A                ++   +        I+GL
Sbjct: 3   NRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWGQIEKLLKEWQPDLVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R   V     DERLTTV A+  L D    +     K
Sbjct: 63  PLNMDGTEQFVTVQARKFANRLHGR-FGVQVQLQDERLTTVEARAHLFDRGGYKALNKGK 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+ +A +IL+   ++
Sbjct: 122 VDATSAVIILESWFEQ 137


>gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4]
 gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7]
 gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3]
 gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4]
 gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7]
 gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3]
          Length = 141

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D GTK IG+AI       A P   L          E+   I        ++GLP
Sbjct: 4   KTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E    H  R F + + + K  V  V  DERLTT  A+  L ++   +     +V
Sbjct: 64  LNMDGTEQEMTHRARKFANRL-NAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122

Query: 137 DSIAAALILQEVLDR 151
           D+++A LI++   + 
Sbjct: 123 DAVSAVLIVESYFEN 137


>gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2M]
 gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2]
 gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD1]
 gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD1]
 gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2]
 gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
           CGD2M]
          Length = 149

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  + + NV 
Sbjct: 61  DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGMRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLE 156
            + R   +D+ AA +ILQ+ LD++S  E
Sbjct: 120 GRARADMLDAEAARVILQQYLDQLSDHE 147


>gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074]
 gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 158

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 1/152 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +   L+  +   ++D+G  RIG+A  DP    A P   +  + V      L + +     
Sbjct: 1   MSGVLRRGRR-LAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEP 59

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP ++ G EGP     R F   +      VP    DER++TV+A Q +    V 
Sbjct: 60  IEVVVGLPRSLKGGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            KK    +D  AA +ILQ  L+       + G
Sbjct: 120 SKKGRAVIDQAAAVVILQSALESERASGDAPG 151


>gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii
           ATCC 27126]
          Length = 143

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D GTK IG+A+       A P   L  +        +            ++GL
Sbjct: 6   NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIVVVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R   V     DERLTT  A+ +L ++   +K    K
Sbjct: 66  PLNMDGTEQEMTQRARKFANRLHGR-FKVAVDTCDERLTTTDAKAMLFELGGYKKLTKDK 124

Query: 136 VDSIAAALILQEV 148
           VDS++A +I    
Sbjct: 125 VDSVSACVIFASW 137


>gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
 gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
          Length = 143

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + R+   Q   +L + +T       +IGLP +M
Sbjct: 7   LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVIGLPYSM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F    I + + +P  + DERLT+V A+  L       +     VD +
Sbjct: 67  DGSIGFQAKQVQKFAKR-ISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNKGLVDRL 125

Query: 140 AAALILQEVLDRISF 154
           AA +ILQ+ LD+   
Sbjct: 126 AATIILQQWLDQRRA 140


>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 137

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +DLG+K +G+++SD     A P   +            ++  +I    +   ++GL
Sbjct: 2   RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG  G R   +  F   +    + +  V WDERLTTV+A++ILI  +VSRKKR + 
Sbjct: 62  PKHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKKI 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ  LD  +
Sbjct: 120 IDQMAAVQILQSYLDSKN 137


>gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis
           str. McKiel]
 gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase
 gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis
           str. McKiel]
          Length = 154

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN  + +ID G+K++G+A+S+  R  A P   +     T     +L
Sbjct: 1   MIIKNLQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           S I    I   +IGLP++M+G    + +    F   +      +P    DERLTT +A  
Sbjct: 61  SIIAKYKICGVVIGLPIDMSGVVTQQTNIVMKFAEELAK-YTNLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            L    V RK R    D++AA++IL+ VLD I 
Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIK 152


>gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 142

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     A     +   +         L   +   +   F++GL
Sbjct: 2   RLLGLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + D+   +P  + DERLTT+ ++++L++   +  RKKR 
Sbjct: 62  PKNMDGTSGASVARSKAYGKRLEDK-FGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
           Wilmington]
 gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase
 gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str.
           Wilmington]
          Length = 156

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN+P+ +ID G+K+IG+A+SD     A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   +IGLP++M+G    + +    F   +  + V +P    DERLTT SA  
Sbjct: 61  NIIEKYQVCGIVIGLPIDMSGGVTKQTNIVMKFADKL-KQSVSLPIYLQDERLTTKSANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L    + RK R    D++AA++IL+ VL+ I   
Sbjct: 120 FLKSFGIKRKDRNNNDDAVAASMILEIVLNAIKRF 154


>gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 154

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++  + I +ID+G  RIG+A  DP    A P   +  + +      L + +        +
Sbjct: 1   MRRGRRI-AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVV 59

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP +++G EGP     R F      R   VP    DER+TTV+A Q L    V+ KK 
Sbjct: 60  VGLPRSLSGREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKG 119

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
              VD  AA +ILQ  L+       + G
Sbjct: 120 RSVVDQAAAVVILQSALETERVSGRAPG 147


>gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
 gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
          Length = 149

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D    FA     L R    +   +L   +    +   ++GLP +M
Sbjct: 13  LGLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSM 72

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ G +    + +   +    + +P  + DERLT+  A+Q+L D ++S  +    +D  
Sbjct: 73  NGTIGFQAKKVQKYATGLAKA-LDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRK 131

Query: 140 AAALILQEVLDRIS 153
           AAA+ILQ+ LD+  
Sbjct: 132 AAAIILQQWLDQRR 145


>gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
           DSM 40736]
          Length = 154

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 63/146 (43%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + +      L   +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R FV  +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 62  LPRSLKGGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+       + G
Sbjct: 122 VIDQAAAVVILQQALESERVSGKAPG 147


>gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC
           6803]
 gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase
 gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803]
          Length = 152

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     +VR    Q   ++   +   N+   ++GLP  M
Sbjct: 8   LGLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTM 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G  G +    + F   + ++ +++P  + DERL++V A+  L             +D  
Sbjct: 68  AGEIGSQAKQVQKFARRVAEQ-LHLPLEYMDERLSSVEAENQLKARKRFSSYDKGLIDQQ 126

Query: 140 AAALILQEVLD-RISFLESS 158
           AA +ILQ+ LD R S L+  
Sbjct: 127 AAEIILQQWLDLRRSHLQEG 146


>gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
 gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
          Length = 164

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           + D       +    + D G  RIG A  D   R AHP   +      +    + + I  
Sbjct: 1   MPDFAA--PASGGCLAFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQE 58

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
                 I+GLP++++GSE       R F H + + +  +P  + DERL++V A+++L + 
Sbjct: 59  WQPENLIVGLPVHIDGSEHALTRLARKFGHRL-NGRFRLPVYWVDERLSSVYAEELLREN 117

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
            V  +K+   +D +AA  ILQ   D 
Sbjct: 118 GVRGRKQKPVLDQVAAQAILQSFFDN 143


>gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
 gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
          Length = 160

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +DLGTK IG+A+SD GR+ A P   + R K T     ++S   T  +   +IGLPL
Sbjct: 13  RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEGPR  S+R+F  N+         +F+DERL+T +  + LI+ + SR +R + VD
Sbjct: 73  NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131

Query: 138 SIAAALILQEVLDRISFLESSK 159
            +AAA ILQ  LD +  + S  
Sbjct: 132 KLAAAYILQSCLDVMGGMFSGA 153


>gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
           CM4]
 gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
           CM4]
          Length = 165

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +DLGTK IG+A+SD GR+ A P   + R K T     ++S   T  +   +IGLPL
Sbjct: 18  RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 77

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEGPR  S+R+F  N+         +F+DERL+T +  + LI+ + SR +R + VD
Sbjct: 78  NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 136

Query: 138 SIAAALILQEVLDRISFLESSK 159
            +AAA ILQ  LD +  + S  
Sbjct: 137 KLAAAYILQSCLDVMGGMFSGA 158


>gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC
           51908]
 gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908]
          Length = 139

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q +   D GTK IG+AI       A+P   +          E+   I        ++GL
Sbjct: 3   SQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE       + F  N I  +  V     DERLTT  A+  L +M   +     +
Sbjct: 63  PLNMDGSEQEMTQRAKKFA-NRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQ 121

Query: 136 VDSIAAALILQEVLDRI 152
           VD+++A LI++   + +
Sbjct: 122 VDAMSAVLIVESYFESL 138


>gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase
 gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC
           17616]
 gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC
           17616]
          Length = 149

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  + + NV 
Sbjct: 61  DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGMRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLE 156
            + R   +D+ AA +ILQ+ LD++S  E
Sbjct: 120 GRARTDMLDAEAARVILQQYLDQLSDHE 147


>gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens
           XB1A]
          Length = 138

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      +  ++  E +   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVSTHELLNF---IGEYMAKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138


>gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
 gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
          Length = 156

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 4/145 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G+K IGLA+SD G   AH R  L R+     +  +L+  +   + A ++GLPL
Sbjct: 2   RVLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
            ++GSEG R    R F+  +     + +  +P   WDER +T +A++ L++ +VSR KR 
Sbjct: 62  ELDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKRK 121

Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
           Q +D++AA  ILQ  LD  +    S
Sbjct: 122 QNIDAVAAQFILQGWLDAQARRRES 146


>gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
 gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
          Length = 151

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG+KRIG+A  D     A     + R    +   +L   + T  +   ++GLP +M
Sbjct: 7   LGLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYSM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+ G +    +     +    + +P  + DERLT+  A+  L     S  +    +D  
Sbjct: 67  DGTLGFQARKVQKLATRLA-AALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLIDRH 125

Query: 140 AAALILQEVLDRIS 153
           AAA+ILQ+ LDR  
Sbjct: 126 AAAIILQQWLDRRR 139


>gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 140

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 1/139 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                I ++DLG +RIGLAISDP R  A   P LVR ++      L   +    +   ++
Sbjct: 3   PDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLL 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G P+NM G+EG +    R F   M +++  VP   WDERLT+V A ++L    +S +KR 
Sbjct: 63  GNPINMKGTEGRQSGWVREFATAM-EKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRA 121

Query: 134 QKVDSIAAALILQEVLDRI 152
             VD ++A ++LQ  LD +
Sbjct: 122 AAVDKLSAVILLQSYLDSL 140


>gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
 gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
          Length = 145

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           + + LK    +   D GTK IG+A        A P   +           +   I     
Sbjct: 1   MTEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLPLNM+GSE P     + F + + + +  V     DERLTT SA++ +      
Sbjct: 61  DLIVVGLPLNMDGSEQPITQRAKKFANRL-NGRFGVKVALQDERLTTASAKEFIFTHGGY 119

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
           +     K+DS++AALIL+  ++ 
Sbjct: 120 KALEKGKIDSVSAALILESWMEN 142


>gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis
           ATCC 25196]
 gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase
 gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC
           25196]
          Length = 151

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 6   IEDLVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
           +E+  K+ +P+     + D G KRIG+AI +     AHP   L  K   +    +   + 
Sbjct: 1   MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD 60

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
                  ++GLP++ +G+E      +R F H +  R   +  V  DER T++SA   L +
Sbjct: 61  EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQAR-FGIRTVLEDERYTSISASSALDE 119

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISF 154
            +V  +++ Q +D IAA LILQ   D+ + 
Sbjct: 120 ASVRGRRQKQVLDQIAAQLILQSYFDQRNA 149


>gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis
           YCH46]
 gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC
           9343]
 gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase
 gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase
 gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46]
 gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC
           9343]
 gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R]
          Length = 138

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SD  +  A+    +   ++      + +++  E++   IIGL
Sbjct: 1   MSRIVAIDYGRKRTGIAVSDTMQIIANGLTTVPTHELLDF---ITNYVKQESVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      + +   FV ++  R   +P  + DER T+V A + +++  + +K R  K
Sbjct: 58  PKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLD 150
             VD I+A +ILQ  L+
Sbjct: 118 ALVDEISATIILQSYLE 134


>gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
           17244]
          Length = 144

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIG 74
            + I ++D G  RIG+A+SD     A     + R K + +   ++  +I   +    I+G
Sbjct: 2   KKRILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
            PLN++G  G R   T  F  +++  K+ +P   WDERL+T  A++ L    V+ +K+ +
Sbjct: 62  HPLNLSGERGTRALVTEEFC-DILKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKRE 120

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +D +AA +IL   LD  + L
Sbjct: 121 VIDMMAAQIILSSYLDYNNNL 141


>gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
 gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
          Length = 138

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D GTKRIG+A++DP +  A     +  K + +    L  ++  E + AF+ G P 
Sbjct: 3   RILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEY---LKKYLLAEQVEAFVFGDPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            M+G+        + F   +      +P  + DER T+  A Q ++   + ++ R  K  
Sbjct: 60  QMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDRKNKER 119

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+I+A +ILQ  +++  
Sbjct: 120 VDTISATIILQYFMEQHR 137


>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
 gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
          Length = 178

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +  +D+G K IG+A+SDP    A       R             +   N+   + GLP
Sbjct: 40  ERLLGLDVGDKYIGIAVSDPLGITAQGYRTWKRGTRDDDLAFFTDVVEQFNVTTLVSGLP 99

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +M G+E  +   TR F    + +++ +  V+ DERLT+ +++++LI+  V R+KR + +
Sbjct: 100 KDMEGNETAQARKTRNFCQ-FLKKRLNLEVVYIDERLTSKASERVLIEGGVRREKRKEYI 158

Query: 137 DSIAAALILQEVLDR 151
           D++AA +ILQ  LD 
Sbjct: 159 DTLAAQMILQVYLDS 173


>gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4]
 gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4]
          Length = 139

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  +   D GTK IG+AI       A P   L          E+ + I        ++GL
Sbjct: 3   SASVLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N I  +  V     DERLTT  A+  L +M   +     +
Sbjct: 63  PLNMDGTEQEMTQRARKFA-NRISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKGQ 121

Query: 136 VDSIAAALILQEVLDRI 152
           VDS++A LI++   + +
Sbjct: 122 VDSMSAVLIIESYFENL 138


>gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1346]
          Length = 140

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SD     A       +  ++       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++ A+    I     +P  + DERLTTV A++ L++  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRKK 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA +ILQ  LD  S
Sbjct: 121 VIDKLAAVMILQNYLDAHS 139


>gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
 gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
 gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1]
 gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus
           CTV-05]
 gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
 gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
 gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1]
 gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus
           CTV-05]
          Length = 142

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISD     A     +   +         L   +    +  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + + K  +P  + DERLTT+ ++++L++   +  RKKR 
Sbjct: 62  PKNMDGTSGSSVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49]
          Length = 149

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVSWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R+  +D+ AA +ILQ+ LD++S  E  
Sbjct: 120 GRARVDMLDAEAARVILQQYLDQLSDHEHH 149


>gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4]
 gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens
           DM4]
          Length = 160

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +DLGTK IG+A+SD GR+ A P   + R K T     +++   T  +   +IGLPL
Sbjct: 13  RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEGPR  S+R+F  N+         +F+DERL+T +  + LI+ + SR +R + VD
Sbjct: 73  NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131

Query: 138 SIAAALILQEVLDRISFLESSK 159
            +AAA ILQ  LD +  + S  
Sbjct: 132 KLAAAYILQSCLDVMGGMFSGA 153


>gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 140

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
            I  +DLG++ +G+++SD     A P   +  +         ++  +I    +   ++GL
Sbjct: 2   RILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG  G R   +  F   +    + V  + WDERLTTV+A++ILI  +VSRKKR + 
Sbjct: 62  PKHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKKV 119

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA  ILQ  LDR
Sbjct: 120 IDQMAAVQILQGYLDR 135


>gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis
           HAW-EB3]
 gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3]
          Length = 139

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D GTK IG+AI       A+P   +          E+   I        ++GLPL
Sbjct: 5   TVLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSE       + F  N I+ +  V     DERLTT  A+  L +M   +     +VD
Sbjct: 65  NMDGSEQEMTQRAKKFA-NRINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVD 123

Query: 138 SIAAALILQEVLDRI 152
           +++A LI++   + +
Sbjct: 124 AMSAVLIIESYFENL 138


>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
           Malish 7]
 gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
 gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 154

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  +++  + L PN P+ +ID G K++G+A+S+  R  A P   +           LL
Sbjct: 1   MIIKNLQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + I    +   IIGLP++M+G+   + +    F   +    + +P    DERLTT +A  
Sbjct: 61  NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           +L    V RK R    D++AA++IL+ VLD I  +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154


>gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
           33331]
          Length = 157

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 62/146 (42%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      L   +        I+G
Sbjct: 5   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     RAF          +P    DER+TTV+A Q L    V  KK   
Sbjct: 65  LPRSLGGGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRS 124

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ  L+      S+ G
Sbjct: 125 VIDQAAAVVILQNALESERASGSAPG 150


>gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
           3283-12]
          Length = 154

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L + DLV +L  +  +  ID G K++GLA+SD  R  A P   + R K+ Q A  + 
Sbjct: 1   MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                  I   ++G+PL+++GS GP   ++R +   + ++   +P   WDERL++ +  +
Sbjct: 61  DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSEQ-TGLPVCQWDERLSSSAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           +LI + ++SR +R + VD +AAA ILQ  LD + 
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153


>gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
 gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
          Length = 157

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 62/137 (45%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      + + +        ++G
Sbjct: 5   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     RAF   +      VP    DER+TTV+A Q L    V+ KK   
Sbjct: 65  LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 124

Query: 135 KVDSIAAALILQEVLDR 151
            +D  AA +ILQ  L+ 
Sbjct: 125 VIDQAAAVIILQTALES 141


>gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           AU 1054]
 gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           HI2424]
 gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           MC0-3]
 gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
           J2315]
 gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase
 gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase
 gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase
 gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase
 gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054]
 gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424]
 gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3]
 gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 149

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +  + + D G KRIG+AI +   R A     +           +   +     
Sbjct: 1   MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R   +D+ AA +ILQ+ LD++S  E  
Sbjct: 120 GRARTDMLDAEAARVILQQYLDQLSDHEHH 149


>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
 gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
          Length = 137

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D GTKRIG+A++DP +  A     +  K V +    L  +++ E + +F++G+P 
Sbjct: 2   RIMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEY---LKKYVSQEQVESFVVGMPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            ++GS+       + F++ +      +P V  DER T+  A   + +  + R KR +K  
Sbjct: 59  QLDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGL 118

Query: 136 VDSIAAALILQEVL 149
           VD+I+A +ILQ+ L
Sbjct: 119 VDAISAVIILQDYL 132


>gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
 gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
          Length = 168

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 2/139 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+I    DL + L P   +  +D GTK IG+A+SD   R A P   + R+K ++ A E+L
Sbjct: 1   MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + + + NI  F++GLPLNM+G+EGPR  STR     ++ R   +P VF DER++T + ++
Sbjct: 61  ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLRH-DLPTVFQDERMSTQAVER 119

Query: 121 ILI-DMNVSRKKRIQKVDS 138
            +I + +++R +R + +DS
Sbjct: 120 AMISEADLTRGQRKKSIDS 138


>gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 145

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GTK IG+AI       A P      K  T   +++   ++       ++G PLN
Sbjct: 6   IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P   S R F H +  R+  +  VF DERL+T  A+  L D    +      VD+
Sbjct: 66  MDGTEQPITESARQFGHALY-RRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124

Query: 139 IAAALILQEVL 149
            +A +IL+   
Sbjct: 125 TSAVIILESWF 135


>gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
          Length = 141

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
                ++D GTKR G+A+SD  +  A+    +    +      L +++  E++   I+GL
Sbjct: 1   MGRFLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTL---FDYLKTYLEREDVECIIVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +   R FV  + +    +P   +DER T+  AQ+ +ID  + +K R  K
Sbjct: 58  PKQMNNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  ++ + 
Sbjct: 118 ALVDEISAVIILQSYMESLR 137


>gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis
           V583]
 gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
 gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
 gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1]
 gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
 gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
 gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
 gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
 gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
 gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
 gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
 gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0470]
 gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0635]
 gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 512]
 gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 516]
 gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0102]
 gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase
 gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           V583]
 gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
 gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
 gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1]
 gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
 gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
 gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
 gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
 gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
 gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
 gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
 gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 512]
 gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0102]
 gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0635]
 gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           DAPTO 516]
 gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0470]
 gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX2137]
 gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX4000]
 gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0017]
 gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0027]
 gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX2141]
 gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX4244]
 gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0012]
 gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0031]
 gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0043]
 gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0312]
 gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0645]
 gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1302]
 gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1341]
 gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0309B]
 gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0630]
 gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX0309A]
 gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           OG1RF]
 gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
          Length = 140

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SD     A       +  ++       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++ A+    I     +P  + DERLTTV A++ L++  + SR KR +
Sbjct: 62  PKNMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA +ILQ  LD  S
Sbjct: 121 VIDKLAAVMILQNYLDAHS 139


>gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str.
           Tucson]
 gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str.
           Tucson]
          Length = 140

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ + + D G+K IG AI       A        +  +    ++   +        ++GL
Sbjct: 3   NRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE P     R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGSEQPVTEQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VDS +A +IL+    R
Sbjct: 122 VDSASAVVILESWFGR 137


>gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis
           SB2B]
 gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B]
          Length = 139

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              +   D GTK IG+A+       A+P   +          ++   I        +IGL
Sbjct: 1   MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + + + +  V     DERLTT  A+  L ++   +     +
Sbjct: 61  PLNMDGTEQEMTQRARKFANRL-NGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQ 119

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 120 VDAVSAVLIVESYFEN 135


>gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
          Length = 142

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     A     +   +         L   +    +  F++GL
Sbjct: 2   RLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + + K  +P  + DERLTT+ ++++L++   +  RKKR 
Sbjct: 62  PKNMDGTSGASVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
 gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
          Length = 158

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L+  +   +ID+G  RIG+A  DP    A P   +  + +      L   +     
Sbjct: 1   MTMTLRRGRR-LAIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEP 59

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP +++G EGP     RAF + +      V     DER+TTV+A Q L     +
Sbjct: 60  LEVVVGLPRSLSGREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRN 119

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
            KK    +D  AA +ILQ  L+
Sbjct: 120 AKKGRSVIDQAAAVVILQNALE 141


>gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
 gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
          Length = 154

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 2/154 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L + DLV +L  +  +  ID G K++GLA+SD  R  A P   + R K+ Q A  + 
Sbjct: 1   MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
              T   I   ++G+PL+++GS GP   ++R +   + ++   +P   WDERL++ +  +
Sbjct: 61  DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSEQ-TGLPVCQWDERLSSSAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           +LI + ++SR +R + VD +AAA ILQ  LD + 
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153


>gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 140

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D GTK IG AI       A        +  +    ++   +        ++GL
Sbjct: 3   NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R   V     DERL+TV A+  L D    R      
Sbjct: 63  PLNMDGTEQLVTDQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VDS +A +IL+   +R  
Sbjct: 122 VDSASAVVILESWFERQR 139


>gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
 gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
          Length = 154

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 1/143 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D GTKR+G+A+     + A     +  K       +L + +       F++GLP
Sbjct: 11  KRVMGFDFGTKRMGVAMGQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQPDGFVVGLP 70

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NM+GSE         F   +  R   +P    DERLTT  A+ I          +   V
Sbjct: 71  FNMDGSESDMSRRANKFSKRLHGR-YGLPSYTIDERLTTFEAKHIARQQGHKGHYKSDPV 129

Query: 137 DSIAAALILQEVLDRISFLESSK 159
           D +AA  IL+  L      E S+
Sbjct: 130 DELAAQFILETWLSEFPLSEQSQ 152


>gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
           TX1342]
          Length = 140

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            I  +D+G++ +G+A+SD     A       +  ++       L   +    +  F++GL
Sbjct: 2   RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++ A+    I     +P  + DERLTTV A++ L++  + SR KR +
Sbjct: 62  PKNMNNSIGPRAEASIAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D +AA +ILQ  LD  S
Sbjct: 121 VIDKLAAVMILQNYLDAHS 139


>gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
 gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
          Length = 148

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D GTKRIG+A+ +     A P   +  +K       +   +     AA ++GL
Sbjct: 7   SGTLLAFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPAALVVGL 66

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P N +G+       +R F + +  R   +P +  DER T+ +A   L    +  +K+   
Sbjct: 67  PCNDDGTPHEMTALSRRFANRLKGR-FNLPTLLIDERYTSAAASSALDKEGIHGRKQKNL 125

Query: 136 VDSIAAALILQEVLDRISF 154
           +D  AA  ILQ   D  S 
Sbjct: 126 IDQYAAQQILQAYFDEPSA 144


>gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
           MTCC 5463]
          Length = 142

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     A     +   +         L   +    +  F++GL
Sbjct: 2   RLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + + K  +P  + DERLTT+ ++++L++   +  RKKR 
Sbjct: 62  PKNMDGTSGASVTRSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens
           AM1]
 gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens
           AM1]
          Length = 165

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +DLGTK IG+A+SD GR+ A P   + R K T     +++   T  +   +IGLPL
Sbjct: 18  RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 77

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEGPR  S+R+F  N+         +F+DERL+T +  + L++ + SR +R + VD
Sbjct: 78  NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLLEADASRARRGELVD 136

Query: 138 SIAAALILQEVLDRISFLESSK 159
            +AAA ILQ  LD +  + S  
Sbjct: 137 KLAAAYILQSCLDVMGGMFSGA 158


>gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
 gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
          Length = 154

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 62/137 (45%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      + + +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     RAF   +      VP    DER+TTV+A Q L    V+ KK   
Sbjct: 62  LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121

Query: 135 KVDSIAAALILQEVLDR 151
            +D  AA +ILQ  L+ 
Sbjct: 122 VIDQAAAVIILQTALES 138


>gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 161

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 1/151 (0%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + +++  +   ++D+G  RIG+A  DP    A P   +  + V      L   +      
Sbjct: 5   MTAMRRGRR-LAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPI 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++GLP ++ G EGP     R F          VP    DER+TTV+A Q +    V  
Sbjct: 64  EVVLGLPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKS 123

Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           KK    +D  AA +ILQ  L+      +  G
Sbjct: 124 KKGRSVIDQAAAVVILQNALESERASGNPPG 154


>gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
           TW-7]
 gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
           TW-7]
          Length = 149

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 10  VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
            ++ KP   + +   D GTK IG+A+       A     +  +        +   +    
Sbjct: 3   KRTFKPQGERTVMGFDFGTKSIGIAVGQELTGSASSLKAVKAQDGIPNWDHIAVQVNEWQ 62

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               ++GLPLNM+G+        + F + + +    +P    DERLTT  A+  L +   
Sbjct: 63  PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIPVQTQDERLTTADAKARLFEQGG 121

Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
            +      VD+++A +IL+   + 
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145


>gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 158

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L+  +   +ID+G  RIG+A  DP    A P   +  + V      L   +     
Sbjct: 1   MTMTLRRGRR-LAIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEP 59

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP +++G EGP     RAF   +      V     DER+TTV+A Q L     +
Sbjct: 60  LEVVVGLPRSLSGREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKN 119

Query: 129 RKKRIQKVDSIAAALILQEVLD 150
            KK    +D  AA +ILQ  L+
Sbjct: 120 AKKGRSVIDQAAAVVILQNALE 141


>gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
 gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
          Length = 168

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 1/143 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I S+D G K IGLA++D     A P   L  +   +   +L   I    ++  I+GLP 
Sbjct: 24  AILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPR 83

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS GP     R FV  +  + + +P  F DERLTT  A ++L     + +++ +K+D
Sbjct: 84  NMDGSYGPAAEKVRQFVLKL-KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKID 142

Query: 138 SIAAALILQEVLDRISFLESSKG 160
           S AAA+ILQ  LD +       G
Sbjct: 143 SYAAAVILQSYLDVLPLKGKRAG 165


>gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase
 gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 149

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 3/143 (2%)

Query: 10  VKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
            K+ KP   + +   D GTK IG+AI       A     +  +       ++   +    
Sbjct: 3   KKNFKPQGQRTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDDIAVQVNEWQ 62

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               ++GLPLNM+G+        + F + + +    +P    DERLTT  A+  L +   
Sbjct: 63  PDLMVVGLPLNMDGTAQEVTFKAKKFANRLHN-HYAIPVETQDERLTTADAKARLFEQGG 121

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
            +     KVD+++A +IL+   +
Sbjct: 122 YKNLGKGKVDNMSAVIILESFFE 144


>gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina
           NCIMB 400]
 gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB
           400]
          Length = 139

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+AI       A P   +          ++   +        ++GLP
Sbjct: 4   QTVLGFDYGTKSIGVAIGQAITASATPLLSIKAVDGIPNWDDIDKLLKEWQPDLVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E       R F  N I+ +  V     DERLTT  A+  L ++   +     +V
Sbjct: 64  LNMDGTEQEMTQRARKFA-NRINGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQV 122

Query: 137 DSIAAALILQEVLDR 151
           D+++A LI++   + 
Sbjct: 123 DAVSAVLIIESYFEN 137


>gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
 gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
          Length = 140

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D G  R G+A+SD     A P   +      + A ++      +     I+GLP+
Sbjct: 2   RILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG++G R      F  +M+   V V    WDER TTV+A + L + NV  KKR   VD
Sbjct: 62  NMNGTKGVRAEKCEEFA-DMLRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVVD 120

Query: 138 SIAAALILQEVL 149
           ++AA +IL+  L
Sbjct: 121 TVAATIILESYL 132


>gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
 gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
          Length = 139

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP +  A+    +    +      L  +   E++   IIGL
Sbjct: 1   MGRILAIDYGRKRTGIAVTDPMQIIANGLTTVRTHDLMDF---LTDYTQKESVEKIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  M+ +    +     FV N   +   +P  + DER T+V AQ+ +I+  + +K R  K
Sbjct: 58  PKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD ++A +ILQ  L+     
Sbjct: 118 ALVDEVSATIILQTYLENKRLF 139


>gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
 gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
          Length = 141

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +DLG+K  G++I D           +  +     A   E+L  +    +   ++GL
Sbjct: 3   RIIGLDLGSKTCGVSICDALHITCRALTTVRFESDDYDACLEEVLKLLQENKVKEVVLGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG  G R   +  F   +      +    WDERLTTV+A++IL+  +VSRKKR + 
Sbjct: 63  PKHMNGDIGIRGEISCEFAKKL--ESSGIKVHLWDERLTTVAAEKILLQGDVSRKKRKKV 120

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ  LDR +
Sbjct: 121 IDQMAAVQILQSFLDRQN 138


>gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 139

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +   + +   D G K IG+AI       A P   L  KK      E+   +   +    +
Sbjct: 1   MPETKTVIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P NM+G+E P     R F+  + +R   +P    DERLTTV A+  L  +   +  +
Sbjct: 61  VGVPFNMDGTEQPITREARNFLMELKNR-FEIPVFPVDERLTTVEARSRLFALGGYKALK 119

Query: 133 IQKVDSIAAALILQEVLDR 151
            + +DSIAA LI++  L+ 
Sbjct: 120 KKSIDSIAAQLIVEIWLEN 138


>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
 gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
 gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
          Length = 142

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q I  +D+G +RIG+AISD   R A P   +      +   ++   +    +   ++GL
Sbjct: 3   EQTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL M G  GP+  + + FV  +    +  P   +DERLT+V+A+Q+L ++ V   K  ++
Sbjct: 63  PLTMRGEHGPQAAAIQRFVDALA-AVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQ 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136


>gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
 gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii SJ-7A-US]
 gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
 gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
 gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
 gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
 gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           jensenii SJ-7A-US]
 gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
          Length = 148

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+AISD     A     +   +         +   +   ++  F++GL
Sbjct: 2   RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKLVREYDVTGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRI 133
           P NM+GS+G  V  ++ +   + D+   +P  + DERLTT+ A ++LI+      RKKR 
Sbjct: 62  PKNMDGSDGVSVSRSKNYGKRLEDK-FSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  LD
Sbjct: 121 EVIDQMAAVLILQNYLD 137


>gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
 gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
          Length = 143

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ +   D GTK IG+AI       A P   L  K       ++   +        +
Sbjct: 1   MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60

Query: 73  IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +GLPL++ G E        + F + +  R         DERL+TV A+  L +    R  
Sbjct: 61  VGLPLDLKGKELESITPRAKKFANRLHGR-FGCQVELHDERLSTVEAKAELFERGGYRSL 119

Query: 132 RIQKVDSIAAALILQEVLDR 151
               +DS +A +IL+   +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139


>gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
 gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
          Length = 158

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+KR+G+A  D     A     + RK   +   E+   +    +   ++G+P + 
Sbjct: 13  LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSR 72

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F + +    + +P  + DERLT+  A+Q+L+  N S       VD  
Sbjct: 73  DGSIGEQARRIQKFANRLAK-TLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRK 131

Query: 140 AAALILQEVLD 150
           AA++ILQ+ LD
Sbjct: 132 AASIILQQWLD 142


>gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC
           700345]
 gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345]
          Length = 141

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+AI       A P   +          E+ + IT       ++GL
Sbjct: 3   DKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N I  +  V     DERLTT  A+  L +M   +     +
Sbjct: 63  PLNMDGTEQEMTQRARKFA-NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQ 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 122 VDAMSAVLIVESYFEN 137


>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
 gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
          Length = 138

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A+SDP +  A     +      Q    LL++I  E +   IIG 
Sbjct: 1   MSRILAIDYGRKRTGIAVSDPLQIIASGLTTVPTH---QLMDFLLNYIKQEQVECIIIGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  +N  +   + +   F++ +      +P    DER T+V A Q ++   + +K R  K
Sbjct: 58  PKQLNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  L+   
Sbjct: 118 ALVDEISATIILQSYLESRR 137


>gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC
           7002]
 gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase
 gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday
           junction resolvase [Synechococcus sp. PCC 7002]
          Length = 144

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + R  +      +  +I   +I   ++GLP  M
Sbjct: 7   LGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +   T+ F   + +    +P  + DERLT+V A+  L       +++   VD  
Sbjct: 67  DGSLGKQAKQTQKFARKLAEA-FGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQR 125

Query: 140 AAALILQEVLD 150
           AA +ILQ+ L+
Sbjct: 126 AAQIILQQWLE 136


>gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
 gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 142

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K IG+A+SDP    A     +   +         L   +       F++GL
Sbjct: 2   RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+G+ G  V  ++A    + ++K  +P  + DERLTTV++++IL+ +  +  R++R 
Sbjct: 62  PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + VD +AA LILQ  LD
Sbjct: 121 EVVDQMAAVLILQNYLD 137


>gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 142

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ +   D GTK IG+AI       A P   +           +   +        +
Sbjct: 1   MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60

Query: 73  IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +GLPL++ G E        + F  N +  +        DERL+TV A+  L +    R  
Sbjct: 61  VGLPLDLEGKELETITPRAKKFA-NRVHGRFGCQVELHDERLSTVEARAELFERGGYRSL 119

Query: 132 RIQKVDSIAAALILQEVLDR 151
               +DS +A +IL+   +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139


>gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424]
 gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase
 gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424]
          Length = 151

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KR+G+A  D     A     + R        +    +   +I   ++GLP +M
Sbjct: 8   LGLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSM 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ G +    + +   +    + +P  + DERLT+  A++ L             VD  
Sbjct: 68  NGTLGSQAKQVQNYATRLAKA-LQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQ 126

Query: 140 AAALILQEVLDRISFLE 156
           AAA+ILQ+ LD+   L 
Sbjct: 127 AAAIILQQWLDQRRSLR 143


>gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae
           D-4968]
 gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150]
 gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae
           D-4968]
 gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150]
          Length = 139

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+      D G KRIG+A+       A P   L  +        +   I   +  A ++G
Sbjct: 2   PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P  ++GSE       R F   +  R V +P    DERL+TV+A++ L      RK +  
Sbjct: 62  IPTCIDGSELYTTVPARRFAQELHKRFV-LPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120

Query: 135 KVDSIAAALILQEVL 149
           +VDS+AA +IL++ L
Sbjct: 121 EVDSVAACVILEQWL 135


>gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans
           2-40]
 gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase
 gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40]
          Length = 142

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q + + D GTKRIG A+       A+    +  K+       + + +        I+GL
Sbjct: 3   SQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F  N I  +  VP   +DERLTT  A+++  +           
Sbjct: 63  PLNMDGTENELCRRAKKFG-NRIHGRFRVPVEMFDERLTTREAKELAWEEGHKGNYANDP 121

Query: 136 VDSIAAALILQEV 148
           VDSIAA LIL+  
Sbjct: 122 VDSIAARLILESW 134


>gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase
 gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 142

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K IG+A+SDP    A     +   +         L   +       F++GL
Sbjct: 2   RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+G+ G  V  ++A    + ++K  +P  + DERLTTV++++IL+ +  +  R++R 
Sbjct: 62  PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + VD +AA LILQ  LD
Sbjct: 121 EVVDQMAAVLILQNYLD 137


>gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
 gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
          Length = 163

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 66/141 (46%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+ R+G+A  DP    A P   L R+       E+   +  ++    +IGLP  +
Sbjct: 3   LGVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRAL 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG      RA+   +      VP    DERL+TV+A + + +   + ++  + VD  
Sbjct: 63  DGHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQA 122

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA +ILQ  LD      +  G
Sbjct: 123 AAVVILQSALDAERATGAPPG 143


>gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum
           SS9]
 gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase
 gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 142

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+AI       A+P   L  K       ++   +        ++GL
Sbjct: 4   SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           PLN+ G E        + F  N I  +        DERL+TV A+  L +    R     
Sbjct: 64  PLNLEGGELESITPRAKKFA-NRIHGRFGCVVELHDERLSTVEAKAELFEHGGYRALSKG 122

Query: 135 KVDSIAAALILQEVLDR 151
            +DS +A +IL+   +R
Sbjct: 123 NIDSQSAVVILESWFER 139


>gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
 gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
          Length = 149

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            +  + + D G KRIG+AI +   R A     +           +   +      A ++G
Sbjct: 7   RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV  + R+ 
Sbjct: 67  LPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVD 125

Query: 135 KVDSIAAALILQEVLDRISFLESS 158
            +D+ AA +ILQ+ LD++S  E  
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149


>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
 gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
 gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
 gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
 gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
 gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
          Length = 153

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q I ++D+G +RIG+AISD   R A P   +      +   +++  +    ++  ++GL
Sbjct: 3   DQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL M G  GP+    + F   +    +  P   +DERLT+V+A+Q+L ++ +   K   +
Sbjct: 63  PLTMRGERGPQAEVVQRFADTLSSA-LSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQ 121

Query: 136 VDSIAAALILQEVLD 150
           +D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136


>gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii
           L2-63]
          Length = 141

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I S+DLG  R G+A+ D     A P   +  K   Q   ++ +          ++GLP N
Sbjct: 3   IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQLLEKVSNTAKETKAELIVVGLPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GSEG    + RAF  N+ +    +  V  DER TT++A   L   N   KKR   VD 
Sbjct: 63  MDGSEGESAQNARAFAENLSNE-TGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVDE 121

Query: 139 IAAALILQEVLDRIS 153
           +AA +ILQ+ LD+  
Sbjct: 122 VAATIILQDYLDKRK 136


>gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens
           CN-32]
 gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32]
          Length = 141

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+AI       A P   L          ++   I        ++GL
Sbjct: 3   SKTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E    H  R F  N I+ K  V  V  DERLTT  A+  L ++   +     +
Sbjct: 63  PLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQ 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 122 VDAVSAVLIIESYFEN 137


>gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL J2-064]
          Length = 124

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 3/125 (2%)

Query: 31  LAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88
           +AISDP    A     +   +  +      +   +    +   ++GLP NMN + GPR  
Sbjct: 1   VAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAE 60

Query: 89  STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
           S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D +AA +ILQ  
Sbjct: 61  SSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSY 119

Query: 149 LDRIS 153
           LD  +
Sbjct: 120 LDTTN 124


>gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
           MED92]
 gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
           MED92]
          Length = 158

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GT+RIG+A        A P   L+ K       E+   I+     A ++G+PLN 
Sbjct: 9   LAFDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGIPLNA 68

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+     H  R F + + +R    P    DERL+T  A++I      S   R + VD I
Sbjct: 69  DGTISDMAHRARKFANRLHER-YKTPCFLMDERLSTAEAKEIHFASGGSDNFREESVDGI 127

Query: 140 AAALILQEVLD 150
           AA LIL+   +
Sbjct: 128 AAQLILESWFN 138


>gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
           SBW25]
 gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
 gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase
 gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens
           SBW25]
 gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
          Length = 145

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQKVD 137
           M+G+          F   + + +  +PF   DERLTT  A+    D        R   VD
Sbjct: 66  MDGTPSDMCLRAEKFARRL-NGRYNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFLESS 158
           +IAAAL+LQ  LD  + L  S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145


>gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
 gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
          Length = 142

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + +ID G KR G+A++DP +  A     +   +V +    L +++  E + AF++GL
Sbjct: 1   MARLLAIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKF---LKAYLVREPVEAFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  ++G +       R FV ++ +    +P  + DER T+V A Q +I    ++K R +K
Sbjct: 58  PKGLDGEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREK 117

Query: 136 --VDSIAAALILQEVLDR 151
             +D ++AA+ILQ  ++R
Sbjct: 118 GNIDKVSAAIILQSYMER 135


>gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
           XylebKG-1]
          Length = 154

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 60/146 (41%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 ++D+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 2   RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F          VP    DER+TTV+A Q +    V  KK   
Sbjct: 62  LPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ  L+      +  G
Sbjct: 122 VIDQAAAVVILQNALESERASGNPPG 147


>gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 151

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   + + D G  RIG+   D      HP   +      +    +   +       F++G
Sbjct: 5   PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase
 gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila]
          Length = 140

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI         P   +          ++   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + +  R       F DERLTT  A+  L +    R      
Sbjct: 63  PLNMDGTEQEITVRARKFGNRLHGRFWQA-VEFKDERLTTTDARARLFERGGYRALEKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD ++A LIL+  ++ 
Sbjct: 122 VDGVSAQLILEAWMEE 137


>gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 141

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 2/140 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ + + D GTK IG+AI       A P   L  +    +   +   +        +
Sbjct: 1   MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60

Query: 73  IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +GLPL+M+G E        + F + +  R         DERL+T  A+  L +    R  
Sbjct: 61  VGLPLDMSGHELETITPRAKKFANRLHGR-FGCQVELHDERLSTAEARAELFEFGGYRNL 119

Query: 132 RIQKVDSIAAALILQEVLDR 151
               +DS +A +IL+   + 
Sbjct: 120 SKGNIDSQSAVVILESWFEN 139


>gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase
 gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 140

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + + D GTK IG A+       A   P    +        +   +        ++GL
Sbjct: 2   GMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F H +  R   V     DERLTT  A+  +      +     K
Sbjct: 62  PLNMDGTEQDLTVRARKFAHRLHGR-FGVAVELQDERLTTTEARAEIFGRGGYKALNKSK 120

Query: 136 VDSIAAALILQEVLDR 151
           VD I+A LIL+   + 
Sbjct: 121 VDGISACLILESWFEN 136


>gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 254

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 4/134 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
            I  +D G K IG+A++DP    A P   + R+   K+ ++  E+ + ++  ++   +IG
Sbjct: 2   RIMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+ +EG R    R F   +  R + VP  + DERLTT++A++IL +  V R+++ +
Sbjct: 62  LPLNMDETEGERAEKAREFAALLAKRVL-VPIEWVDERLTTIAAREILDESGVPREEQKR 120

Query: 135 KVDSIAAALILQEV 148
            +D +AA LIL+  
Sbjct: 121 MIDQVAAQLILETW 134


>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
           13941]
 gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
           13941]
          Length = 146

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             + ++D+G +RIG+A+SDP R  A P   +  K        + S I   ++AA ++GLP
Sbjct: 7   GRVMALDVGEQRIGVALSDPTRTLATPLTTIRAKPRATALKRIASLIREHDVAALVVGLP 66

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L M+G  GP+    + FV  +  R + +P  F DERLTTV+A++++ID+ +  ++R  ++
Sbjct: 67  LTMSGDVGPQAALVQQFVEEL-RRAIAIPLTFVDERLTTVAAERMMIDLKLKPEQRKARI 125

Query: 137 DSIAAALILQEVLD 150
           D +AA++ILQ+ LD
Sbjct: 126 DEVAASIILQDFLD 139


>gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
 gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
          Length = 137

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
            I  +DLG+K +G+++SD     A P   +            ++  +I    +   ++GL
Sbjct: 2   RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P +MNG  G R   +  F   +    + +  V WDERLTTV+A++ILI  +VSRKKR + 
Sbjct: 62  PKHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKKI 119

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA  ILQ  LD 
Sbjct: 120 IDQMAAVQILQSYLDS 135


>gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4]
          Length = 140

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+AI       A P   +          E+ + IT       ++GL
Sbjct: 3   DKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F  N I  +  V     DERLTT  A+  L +M   +     +
Sbjct: 63  PLNMDGTEQEMTQRARKFA-NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQ 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 122 VDAMSAVLIVESYFEN 137


>gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1]
 gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1]
 gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
          Length = 141

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D GTK IG+AI       A P   L          ++   I        ++GLP
Sbjct: 4   KTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+E    H  R F  N I+ K  V  V  DERLTT  A+  L ++   +     +V
Sbjct: 64  LNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122

Query: 137 DSIAAALILQEVLDR 151
           D+++A LI++   + 
Sbjct: 123 DAVSAVLIIESYFEN 137


>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Eubacterium saburreum DSM 3986]
 gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Eubacterium saburreum DSM 3986]
          Length = 145

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFI 72
            + I  +D G+K IG+AISD     A P   + R K  +   +  ++   +  +NI   +
Sbjct: 4   KERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIV 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP+NMNG  G RV  T  FV  +  ++V VP +  DERLTTV A +IL +  V ++ R
Sbjct: 64  VGLPVNMNGRRGKRVSLTLEFVEKL-KQRVDVPIIMQDERLTTVEADEILDESGVKKENR 122

Query: 133 IQKVDSIAAALILQEVLDRIS 153
            Q +D +AA +IL+E +++ +
Sbjct: 123 KQFIDMVAAGIILREYMEKEN 143


>gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 153

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 1/146 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G KRIG+A        AHP   L      Q    + + I        ++G
Sbjct: 8   PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E       R F   + +R   +P  F DER T++ A+ +L +  V  +K+  
Sbjct: 68  LPVHSDGTEHELTRLARKFGRRLHER-FALPVYFADERHTSLLAESLLAEAQVFGRKQKS 126

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +DS+AA +IL +  D  +    + G
Sbjct: 127 VLDSVAAQVILFDFFDSGAVERLNGG 152


>gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL
           15998]
 gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL
           11379]
 gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 157

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 60/146 (41%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 ++D+G  RIG+A  DP    A P   +  + V      L   +        I+G
Sbjct: 5   RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F          VP    DER+TTV+A Q +    V  KK   
Sbjct: 65  LPRSLGGGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 124

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ  L+      +  G
Sbjct: 125 VIDQAAAVVILQNALESERASGNPPG 150


>gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155]
 gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185]
 gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195]
 gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223]
 gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
 gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
 gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155]
 gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185]
 gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195]
 gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223]
 gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
 gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
 gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
          Length = 141

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+AI       A P   +          ++   I        ++GL
Sbjct: 3   SKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E    H  R F  N I+ K  V     DERLTT  A+  L ++   +     +
Sbjct: 63  PLNMDGTEQDMTHRARKFA-NRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQ 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 122 VDAVSAVLIIESYFEN 137


>gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase
 gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 142

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K IG+A+SDP    A     +   +         L   +       F++GL
Sbjct: 2   RLLGLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+G+ G  V  ++A    + ++K  +P  + DERLTTV++++IL+ +  +  R++R 
Sbjct: 62  PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + VD +AA LILQ  LD
Sbjct: 121 EVVDQMAAVLILQNYLD 137


>gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
 gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
          Length = 141

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            N+ I + D GT  IG AI       A        K+ + +   +   +        I+G
Sbjct: 2   KNRTIIAFDFGTHSIGTAIGQEITGTARALSAFKAKEGSPSWELIEKLLKEWQPDLIIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+E       R F + +  R   V     DERLTT+ A+  L D    +     
Sbjct: 62  LPLNMDGTEQLVTAQARKFANRLHGR-FGVQVELHDERLTTIEARSHLFDHGGYKALDKG 120

Query: 135 KVDSIAAALILQEVLDR 151
           KVDS++A +IL+   ++
Sbjct: 121 KVDSVSAVVILESWFEQ 137


>gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
 gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
          Length = 162

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 16/148 (10%)

Query: 21  SIDLG---------------TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           ++D G               TK IG+A  D G RFA     + R K T    +L   +T 
Sbjct: 12  ALDYGNALPDGGALLGLDLGTKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTA 71

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
            +IA  ++GLP NM+G+EGPR  ++RA+  N+  R   +P + WDER +T SA+  +I  
Sbjct: 72  RSIAGLVVGLPRNMDGTEGPRAQASRAYAKNLA-RAFGLPVLLWDERWSTSSAESAMIGQ 130

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
           ++SR KR +K+DS AAA+ILQ  +D ++
Sbjct: 131 DMSRAKRAEKIDSHAAAVILQGAIDTLA 158


>gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis
           JLW8]
 gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8]
          Length = 156

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D G +RIG+A+ +     A+P   +  +        +   ++       ++GL
Sbjct: 17  SGTVLAFDFGERRIGIAVGEHLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVGL 76

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+++GSE       + F   + + +  +P    DER ++  A Q+L +  +  + + + 
Sbjct: 77  PLSLDGSEHGVTQLCKKFARRL-NGRFNLPVALIDERYSSAEASQLLNEAGIRGRAQKEM 135

Query: 136 VDSIAAALILQEVLDRIS 153
           +D +AA  ILQ   D+ S
Sbjct: 136 LDQVAAQTILQSYFDQAS 153


>gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase
 gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 140

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG A+       A   P    +        +   +        ++GLPLNM
Sbjct: 8   LAFDFGTKSIGCAVGQSITGTAQALPAFKAQNGIPNWDSIEKCLKEWKPDILVVGLPLNM 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E       R F + +  R   V     DERLTT  A+  +      +     KVD I
Sbjct: 68  DGTEQEFTSRARKFANRLHGR-FGVKVELQDERLTTTEARTEIFQRGGYKALNKSKVDGI 126

Query: 140 AAALILQEVLDRIS 153
           +AALIL+   +R S
Sbjct: 127 SAALILESWFERHS 140


>gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455]
 gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455]
          Length = 140

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+GT RIG+A+SDP   FA                EL       +    ++GLP+
Sbjct: 3   RIICLDVGTVRIGVAVSDPLGMFAQGIAVWKADGPWLD--ELERAFERYDTGCLLVGLPI 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G+ GP     +  V  +  R   V   +WDER +T +A   L++ NVSR+KR Q VD
Sbjct: 61  REDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQSVD 120

Query: 138 SIAAALILQEVLD 150
            IAAA+ILQ  +D
Sbjct: 121 KIAAAVILQSYMD 133


>gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
 gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
          Length = 140

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D GTK IG+AI       A+P   +          E+   I        ++GLPL
Sbjct: 5   TVLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E       + F  N I  +  V     DERLTT  A+  L ++   +     +VD
Sbjct: 65  NMDGTEQEITQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123

Query: 138 SIAAALILQEVLDRI 152
           +++A LI++   + +
Sbjct: 124 AMSAVLIIESYFETM 138


>gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
 gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
          Length = 140

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D GTK IG+AI        +P   +          E+   I        ++GLPL
Sbjct: 5   TVLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E       + F  N I  +  V     DERLTT  A+  L ++   +     +VD
Sbjct: 65  NMDGTEQEMTQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123

Query: 138 SIAAALILQEVLDRI 152
           +++A LI++   + +
Sbjct: 124 AMSAVLIIESYFENL 138


>gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase
 gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens]
 gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 145

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 6   LLGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  +PF   DERLTT  A+ + L+        R   VD
Sbjct: 66  MDGTPSDMCLRAEKFARRL-NGRYNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD  + L
Sbjct: 125 AIAAALLLQGWLDANAAL 142


>gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
           K411]
 gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase
 gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
           K411]
          Length = 155

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 59/137 (43%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   +D+GT RIG+AISDP    A P   +           ++       +   ++
Sbjct: 12  PGRGRRLGLDVGTVRIGVAISDPDCILATPVETIQATADDADVQRVVEICRDNFVVEIVV 71

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+ + G+      +   F   + +    +P    DER++T++A        V+ KK  
Sbjct: 72  GLPVALRGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGR 131

Query: 134 QKVDSIAAALILQEVLD 150
           +K+D  AA  ILQ  LD
Sbjct: 132 KKIDQAAAVHILQGWLD 148


>gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase
          Length = 139

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 2   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  R   +P    DERL+TV A+  L +    R+ +  
Sbjct: 62  LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137


>gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila
           str. Paris]
 gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase
 gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris]
          Length = 139

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 2   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  R   +P    DERL+TV A+  L +    R+ +  
Sbjct: 62  LPTCIDDRELYTTSAARHFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137


>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
 gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
          Length = 175

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFI 72
                   +D+GT RIG+A+SDP    A P   + R K+ T+    L + +    +   +
Sbjct: 23  PGRGRRLGVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVV 82

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP  +    G            +  R   VP    DER TTV+AQ+ L +  V  + +
Sbjct: 83  VGLPRTLADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQ 142

Query: 133 IQKVDSIAAALILQEVLDRISF 154
              +D  AA  ILQ  LD+   
Sbjct: 143 RSVIDQAAAVGILQNWLDQRRA 164


>gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis
           UMN179]
 gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis
           UMN179]
          Length = 139

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  + + D GT+ IG A+     + A   P    +        +   +        ++GL
Sbjct: 3   NLTVIAFDFGTQSIGCAVGQSITQTAQALPAFKAQDGIPNWDAIKKCLDEWKPDLVVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F + + + +  V     DERLTT  A+  +      R     K
Sbjct: 63  PLNMDGTEQEITQRARKFANRL-NGRFGVKIALQDERLTTTEARAEIFSRGGYRALNKGK 121

Query: 136 VDSIAAALILQEVLDR 151
           +DSI+A LIL+   + 
Sbjct: 122 IDSISACLILESWFEN 137


>gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia
           vietnamiensis G4]
 gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase
 gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4]
          Length = 149

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +   +    + D G KRIG+A+ +   R A     +           +   +     
Sbjct: 1   MSGASARDATFLAFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLP++ +G+        + F + + + +  +P  + DER ++V A+  L + NV 
Sbjct: 61  DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
            + R   +D+ AA +ILQ+  D +S  E  
Sbjct: 120 GRARTDMLDAEAARVILQQYFDELSDHEHH 149


>gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
           D16]
 gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
           D16]
          Length = 140

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID G    G+AISDP    A     +  +K      EL   +    +   ++G P 
Sbjct: 2   RVMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGPR    R F   +  +   +  V WDER TTV A +IL +   + KKR + VD
Sbjct: 62  NMDGTEGPRAQLYRDFAAQVA-QATGLEPVLWDERRTTVDAHRILAEGGKNAKKRKKTVD 120

Query: 138 SIAAALILQEVLD 150
           ++AA+LIL+  LD
Sbjct: 121 AVAASLILEGYLD 133


>gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
 gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
          Length = 143

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             I ++D+G  RIG+A++DP    A P   L RK   + A  LL  I    +   ++G P
Sbjct: 4   GRIMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQK 135
           L+++G   P       F   + +R   +P   WDERL++V+A +IL +   +R K R   
Sbjct: 64  LHLSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFI 122

Query: 136 VDSIAAALILQEVL 149
           +D +AA LIL+  +
Sbjct: 123 IDQVAAVLILEGWM 136


>gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp.
           SA3_actG]
 gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp.
           SA3_actF]
          Length = 154

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 61/137 (44%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 +ID+G  RIG+A  DP    A P   +  + V      + + +        ++G
Sbjct: 2   RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EG      RAF   +      VP    DER+TTV+A Q L    V+ KK   
Sbjct: 62  LPRSLRGGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121

Query: 135 KVDSIAAALILQEVLDR 151
            +D  AA +ILQ  L+ 
Sbjct: 122 VIDQAAAVIILQTALES 138


>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
           IMS101]
 gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
          Length = 149

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KR+G+A  D     A     + R    +   +L   +    +   I+GLP +M
Sbjct: 9   LGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSM 68

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NGS G +    + +   +  + + +P  + DERLT+V A+++L   N+S  +    +D  
Sbjct: 69  NGSIGFQAKKVQRYAQRL-SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRK 127

Query: 140 AAALILQEVLDRIS 153
           AAALILQ+ LD   
Sbjct: 128 AAALILQQWLDERR 141


>gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales
           bacterium ALC-1]
          Length = 137

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR GLA++D  +  A     +  K++      L +++ TE++  F++GL
Sbjct: 1   MGRILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPF---LKNYVDTESVEKFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  M+ +        + F+  +     ++P    DER T+  A Q +ID  + +K+R  K
Sbjct: 58  PKQMDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             +D I+A LILQ  L   S
Sbjct: 118 ALIDEISATLILQSYLTSQS 137


>gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b]
          Length = 142

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 5   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  R   +P    DERL+TV A+  L +    R+ +  
Sbjct: 65  LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140


>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1]
 gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           11V1-d]
 gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           09V1-c]
 gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           03V1-b]
 gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           01V1-a]
 gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           2503V10-D]
 gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           3008A-a]
 gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2052A-d]
 gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2053A-b]
 gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
           55195]
 gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
           143-D]
 gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
 gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           1401G]
 gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           11V1-d]
 gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           09V1-c]
 gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           03V1-b]
 gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
           01V1-a]
 gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2053A-b]
 gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2052A-d]
 gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           2062A-h1]
 gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
           3008A-a]
 gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
           55195]
 gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
           143-D]
 gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
 gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
           1401G]
          Length = 143

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SD     A     +   +         +   +    ++ F++GL
Sbjct: 2   RLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
           P NM+G+ G        +   +   K  +P  + DERLTT+ A++IL+ +  +S R  R 
Sbjct: 62  PKNMDGTCGESAQRCLDYGERL-KAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARK 120

Query: 134 QKVDSIAAALILQEVLD 150
           + +D +AA LILQ  L+
Sbjct: 121 KIIDQMAAVLILQNFLE 137


>gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase
 gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 140

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 2/134 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID G KRIG+AI+D  R  A P   +    + + AL++L      +++  ++GLPL
Sbjct: 3   RIMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPL 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
           NMNG+EG    + R F+   I     +     DERLTTV A+++LI + ++SR+KR    
Sbjct: 63  NMNGTEGGMAETVRKFIEK-IKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKGIK 121

Query: 137 DSIAAALILQEVLD 150
           D + AALILQ  LD
Sbjct: 122 DKVVAALILQTYLD 135


>gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
          Length = 157

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           K  +  + I ++D+G  RIG+A+ DP    A P   +     +Q    L + +   +   
Sbjct: 4   KVFRRGRRI-AVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQ--ARLKAIVEEYDAVE 60

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++GLP ++NG EGP     R +   +      V     DER+TTV+A   L     S K
Sbjct: 61  VVVGLPRSLNGKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSK 120

Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160
           K    +D  AA +ILQ  L+       + G
Sbjct: 121 KGRSVIDQAAAVVILQSALETERVSGRAPG 150


>gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium
           HTCC2181]
 gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium
           HTCC2181]
          Length = 148

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
            +++PN  + + D G K+IG+AI +   + AHP   + + K ++    + + +       
Sbjct: 8   SNIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLETIRKVKKSERIEIIENLLNEWEPGI 67

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++GLPLN +G+E       + F   + +R   VP V  DER T+V A+ +L +   S K
Sbjct: 68  VVVGLPLNEDGTESRLTLLAQNFAKKIKNR-FQVPIVMVDERYTSVEAKILLNENVKSIK 126

Query: 131 KRIQKVDSIAAALILQEVLDR 151
           K  Q +D +AA +IL    DR
Sbjct: 127 KGNQVIDQVAAQIILGSYFDR 147


>gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
 gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
          Length = 138

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D GTKR+G+A++DP +  A     +  K + +    L  ++ TE + AF+IG P 
Sbjct: 3   RILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEY---LKKYLLTEQVEAFVIGDPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            M+GS        + F   +      +P  + DER T+  A Q ++   + ++ R  K  
Sbjct: 60  QMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDRKDKSR 119

Query: 136 VDSIAAALILQEVLDR 151
           VD+IAA +ILQ  +++
Sbjct: 120 VDTIAATIILQYFMEQ 135


>gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
 gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia
           1]
 gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
          Length = 142

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 5   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  R   +P    DERL+TV A+  L +    R+ +  
Sbjct: 65  LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140


>gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
 gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase
 gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
          Length = 139

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 2   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  +   +P    DERL+TV A+  L +    R+ +  
Sbjct: 62  LPTCIDDRELYTTSAARRFAKQLHKQ-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137


>gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC2047]
          Length = 142

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I + D GT RIG+A        A P P L  +       +L   I      AF++G+
Sbjct: 6   QHRILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGV 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+EGP     R F + +  R  + P    DERL+T+ A++ L + N    K    
Sbjct: 66  PLNMDGTEGPITPRARKFANRLHGR-FHKPIYTMDERLSTIEAKEKLAEFN---NKNSIG 121

Query: 136 VDSIAAALILQEVL 149
           +DS+AA LIL+   
Sbjct: 122 LDSMAATLILESWF 135


>gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76]
 gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 137

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +D+G++ +G+A+SD     A       +  ++       L   +    +  F++GLP 
Sbjct: 1   MGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
           NMN S GPR  ++ A+    I     +P  + DERLTTV A++ L++  + SR KR + +
Sbjct: 61  NMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVI 119

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD  S
Sbjct: 120 DKLAAVMILQNYLDAHS 136


>gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Mississippi]
 gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Puerto Rico]
 gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Virginia]
 gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase
          Length = 157

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE    +L  ++ I  +D G K+ GLA+SD     A P    +R+ V Q   EL 
Sbjct: 1   MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  E I A ++GLPL ++G EG      R+FV  +I +   V     DER TT  A +
Sbjct: 61  AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKKS-GVYVYLHDERFTTAMASR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
               + + RK   +  D I+AALILQ+VLD
Sbjct: 120 TTESLGLRRKASQKVDDKISAALILQQVLD 149


>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
           4571]
 gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
 gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
           4571]
          Length = 142

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+++SD     A     +   +         L   +    +  F++GL
Sbjct: 2   RLLGLDIGSKTVGVSVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
           P NM+G+ G  V  ++A+   + + K  +P  + DERLTT+ ++++L++   +  RKKR 
Sbjct: 62  PKNMDGTSGASVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120

Query: 134 QKVDSIAAALILQEVLD 150
           Q +D +AA LILQ  LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137


>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
 gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
          Length = 146

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G K IG+A+SDP    A     L R +  +    +L       +   +IGLP 
Sbjct: 2   RILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + G  GP+      F   +  +   +  ++WDER TT  A+++L+  +VSRKKR +  D
Sbjct: 62  TLAGEIGPQAQKVLRFGELLAQQ--GLKIIYWDERFTTKEAEKVLLAADVSRKKRRRVKD 119

Query: 138 SIAAALILQEVLDRIS 153
            +AA L+L+  L++  
Sbjct: 120 ILAAVLLLEAYLEKRR 135


>gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 138

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTKRIG+A++DP +  A+    +   ++      L +++ TE +  F++G P 
Sbjct: 2   RLMAFDYGTKRIGIAVTDPLQIVANALTTVHPNEIFDF---LKNYLQTEQVETFVVGKPR 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
            M+GS+         F+  +  +   +P    DER T+  A  ++    + + KR     
Sbjct: 59  QMDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGL 118

Query: 136 VDSIAAALILQEVLDRISFL 155
           VD+I+A +ILQ  +D  SFL
Sbjct: 119 VDTISATIILQSYMDSRSFL 138


>gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72]
 gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase
 gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72]
          Length = 156

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L     + + D G  RIG+A+ +   R A+P   +  +        +   +      A +
Sbjct: 12  LPARGTLLAFDFGLARIGVAVGELETRHANPLLTVHEEANAARFAIIARLLDEWKPVALV 71

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KK 131
           +GLP +++G E       R F + +  R   +P    DERL++ +A++ L D  +S  + 
Sbjct: 72  VGLPGHLDGREHELAPRCRRFANQLHGR-FGIPVHLVDERLSSAAAERQLHDAGLSGWQA 130

Query: 132 RIQKVDSIAAALILQEVLD 150
           R   +D++AA LILQ  LD
Sbjct: 131 RKPVLDAVAAQLILQHFLD 149


>gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
 gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
          Length = 143

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  ++ +   D GTK IG+AI       A P   L  K       ++   +        +
Sbjct: 1   MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60

Query: 73  IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +GLPL++ G E        + F + +  R         DERL+TV A+  L +    R  
Sbjct: 61  VGLPLDLEGKELESITPRAKKFANRLHGR-FGYQVELHDERLSTVEAKAELFERGGYRSL 119

Query: 132 RIQKVDSIAAALILQEVLDR 151
               +DS +A +IL+   +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139


>gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae]
 gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli]
 gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae]
 gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes]
 gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli]
          Length = 140

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I   D GTK IG+AI       A P   L          E+   +        ++GL
Sbjct: 3   SRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G++       R F + +  R    P  F DERLTT  A+  L +    +      
Sbjct: 63  PLNMDGTDQEITVRARKFGNRLHGR-FGKPVEFKDERLTTTDARARLFERGGYKALDKGS 121

Query: 136 VDSIAAALILQEVLDR 151
           VD ++A LI++  ++ 
Sbjct: 122 VDGVSAQLIVEAWMEE 137


>gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
 gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
          Length = 135

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D GTK IG+A+       A     L  +        +   +        ++GLPL
Sbjct: 2   TVVGFDFGTKSIGVAVGQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERVVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     + F  N I  +  VP VF DERLT+ +A++ L + +  R     KVD
Sbjct: 62  NMDGTEQPLTQRAKKFG-NRIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLEKGKVD 120

Query: 138 SIAAALILQEVL 149
           S AA LI+++ L
Sbjct: 121 SAAALLIVEDYL 132


>gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
 gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
          Length = 160

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 26  TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
           TK IG+A SDP RR A     + RK  T  A  LL+         F++GLPLNM+GSEGP
Sbjct: 28  TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87

Query: 86  RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
           R  STRAF  N+      +P   WDERL+T + ++ LI  +VSR KR + +D  AA  IL
Sbjct: 88  RAQSTRAFARNLAK-LTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146

Query: 146 QEVLDRISFLESSK 159
           Q  LDR++ L  ++
Sbjct: 147 QGALDRLAALRRAE 160


>gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 144

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + +ID G KR G+A++DP +  A+    +    V      ++S++  E++   ++GL
Sbjct: 1   MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVRQEHVERIVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   NG +   +    +FV  + +R   +P  F+DER T+V A Q ++   + +K R  K
Sbjct: 58  PKQANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117

Query: 136 --VDSIAAALILQEVLDRISFLESS 158
             VD I+A +ILQ  ++    L+ +
Sbjct: 118 ALVDEISATIILQGWMESRMMLKKN 142


>gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
           2638]
 gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase
 gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
           2638]
          Length = 135

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + SID GTKR+GLAISDP + FA P   + R        ELL  I  E +   +IGLPL
Sbjct: 2   KVLSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +++G +       R F  ++ +R+V +P    DERL++++A+  L +  +  +KR + +D
Sbjct: 62  SLDGEDTLTTRQVRNFAASL-ERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 120

Query: 138 SIAAALILQEVLDR 151
           S AA +IL+  L R
Sbjct: 121 SQAAKIILETWLAR 134


>gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425]
 gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425]
          Length = 150

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG KRIG+A  D     A     L R+   +   +L   +    +   ++GLP  M
Sbjct: 5   LGLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    +     +  + + +P  + DERLT+  A+ +L        +    +D  
Sbjct: 65  DGSIGFQARRVQRLAQRIA-QALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRK 123

Query: 140 AAALILQEVLDRISFLE 156
           AAALILQ+ L++    +
Sbjct: 124 AAALILQQWLEQRRLSQ 140


>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
           29799]
 gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
           29799]
          Length = 139

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID G  R G+AISDP    A     +  +K    A E+   +    +   ++G P 
Sbjct: 2   RIMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGPR    RAF    + +   +  V WDER TTV A  IL       K+  + VD
Sbjct: 62  NMDGTEGPRAELYRAFAQQ-VGQVTGLTPVLWDERRTTVEAHNILHASGKRMKQHKKTVD 120

Query: 138 SIAAALILQEVLDRIS 153
           ++AA LIL+  L R  
Sbjct: 121 AVAATLILEGYLTRRR 136


>gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
           12261]
 gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
           12261]
          Length = 138

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D+G KRIG+A+SDP   FA    F+   K  +  L+L   + + N+   +IG 
Sbjct: 1   MGRILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGN 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL  NG+ GP     +     +  R  ++  V WDER TT  AQQ+L++ NVSRKKR +K
Sbjct: 59  PLRTNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEK 118

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AAALILQ  LD   
Sbjct: 119 VDQLAAALILQNYLDHTR 136


>gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22]
 gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei
           87.22]
          Length = 154

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 62/146 (42%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                 ++D+G  RIG+A  DP    A P   +  + V      L   +        I+G
Sbjct: 2   RRGRRLALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP ++ G EGP     R F   +      VP    DER+TTV+A Q L    V  KK   
Sbjct: 62  LPRSLKGGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRS 121

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D  AA +ILQ+ L+       + G
Sbjct: 122 VIDQAAAVIILQQALESERMSGKAPG 147


>gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
 gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
          Length = 159

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 1/133 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +   D GT RIG+AI       A P   L   +       +   +       F++GLP
Sbjct: 22  KTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFVVGLP 81

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE       R F   +  R    P+   DERL++  A+  +I     R  +   V
Sbjct: 82  LNMDGSENEMCQRARKFAKRLHGR-YNRPYHMMDERLSSYDAKGQVIAQGGHRNFKENSV 140

Query: 137 DSIAAALILQEVL 149
           D +AA LI++   
Sbjct: 141 DGLAAQLIIETWF 153


>gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
           ymp]
 gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp]
          Length = 144

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP + +   D GTK+IG+A+       A     L  +        + + I      A ++
Sbjct: 4   KPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAVVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR 132
           GLPLNM+G+          F   + +    +P    DERLTT  A+ Q L +   S   R
Sbjct: 64  GLPLNMDGTPSEMSARAEKFARRL-NGHFNLPAYTHDERLTTFEAKGQRLRE-GQSGGYR 121

Query: 133 IQKVDSIAAALILQEVLDR 151
            + VD+IAAAL+LQ  L+ 
Sbjct: 122 ERPVDAIAAALLLQGWLEE 140


>gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
 gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
          Length = 155

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 59/137 (43%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   +D+GT RIG+AISDP    A P   +           +        +   ++
Sbjct: 12  PGRGRRLGLDVGTVRIGVAISDPDCILATPVETVQATADDADVQRVAEICRENFVVEIVV 71

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+ + G+      +   F   + +    +P    DER++T++A Q      V+ KK  
Sbjct: 72  GLPVALRGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGR 131

Query: 134 QKVDSIAAALILQEVLD 150
           +K+D  AA  ILQ  LD
Sbjct: 132 KKIDQAAAVHILQGWLD 148


>gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
 gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Florida]
 gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
 gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
           str. Florida]
          Length = 164

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE    +L  ++ I  +D G K+ GLA+SD     A P    +R+ V Q   EL 
Sbjct: 8   MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 67

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  E I A ++GLPL ++G EG      R+FV  +I +   V     DER TT  A +
Sbjct: 68  AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKKS-GVYVYLHDERFTTAMASR 126

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
               + + RK   +  D I+AALILQ+VLD
Sbjct: 127 TTESLGLRRKASQKVDDKISAALILQQVLD 156


>gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
           NK-01]
 gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
           NK-01]
          Length = 144

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           KP + +   D GTK+IG+A+       A     L  +        + + I      A ++
Sbjct: 4   KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR 132
           GLPLNM+G+          F   + + +  +P    DERLTT  A+ Q L +   S   R
Sbjct: 64  GLPLNMDGTPSEMSARAEKFARRL-NGRFNLPAYTHDERLTTFEAKGQRLRE-GQSGGYR 121

Query: 133 IQKVDSIAAALILQEVLDR 151
            + VD+IAAAL+LQ  L+ 
Sbjct: 122 ERPVDAIAAALLLQGWLEE 140


>gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum
           3TCK]
 gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum
           3TCK]
          Length = 142

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG+AI       A+P   L  K       ++   +        ++GL
Sbjct: 4   SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           PL++ G E        + F  N I  +        DERL+TV A+  L +    R     
Sbjct: 64  PLDLEGGELESITPRAKKFA-NRIHGRFGCVVELHDERLSTVEAKADLFERGGYRSLSKG 122

Query: 135 KVDSIAAALILQEVLDR 151
            +DS +A +IL+   +R
Sbjct: 123 NIDSQSAVVILESWFER 139


>gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
           11841]
 gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
           11841]
          Length = 141

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + +ID G KR G+A++DP +  A+    +    V      ++S++  E++   ++G 
Sbjct: 1   MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVQQEHVERIVVGQ 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   NG +   +    +FV  + +R   +P  F+DER T+V A Q ++   + +K R  K
Sbjct: 58  PKQANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117

Query: 136 --VDSIAAALILQEVLDRISFLE 156
             VD I+A +ILQ  ++    L+
Sbjct: 118 ALVDEISATIILQGWMESRMMLK 140


>gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 153

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  D     +HP   +           +   +       F++G
Sbjct: 5   PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLTTVTGGSNEVKFEAVAKLVDEWQPVQFVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E      +R F   +  R   +P  + DER++++ A+ +L +  V  +K+  
Sbjct: 65  LPVHADGTEHELTRLSRKFGRRLQGR-FKLPVYWVDERMSSLYAESLLAEAQVFGRKQKA 123

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ   +
Sbjct: 124 VLDQVAAQAILQGFFE 139


>gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
           ATCC 51196]
          Length = 146

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G +R+G+A+SD     A P   LVR    Q    L   +        ++G PL M
Sbjct: 1   MALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G   P+    +AF    +  +  +P   WDERLTT  A + L        +  + VD +
Sbjct: 61  SGDISPQALKAQAFAA-WVREEFGLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQV 119

Query: 140 AAALILQEVL 149
           AA LIL   L
Sbjct: 120 AAVLILDGFL 129


>gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
 gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
          Length = 140

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + + D GT+RIG+A+         P   +  +  T    +L   +        ++GL
Sbjct: 6   QRRVMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  R  +V     DERLT+  A+  ++    SR  R   
Sbjct: 66  PLNMDDSENEMCVRARKFGKRLHGR-FHVTVEMVDERLTSYQAKGEVMAAGGSRNYRRDG 124

Query: 136 VDSIAAALILQEVLDR 151
           +D  AA LIL+   ++
Sbjct: 125 IDDRAAVLILETWFNQ 140


>gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
 gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
          Length = 143

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D G  R G+A+SDP    A P   +     TQ   +    +        ++GLP 
Sbjct: 2   KVMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    +AF   + +    VP + +DER TT++AQ      N   KKR   +D
Sbjct: 62  NMNGTLGPRAEKAQAFAKAL-EAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSID 120

Query: 138 SIAAALILQEVLDRISFLESSK 159
           + AA +ILQ+ LD +    + K
Sbjct: 121 AAAATIILQDYLDSVRNTPNGK 142


>gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby]
 gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella
           pneumophila str. Corby]
          Length = 142

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P       D G KRIG+A+       A P   +  K        +   IT  N  A I+G
Sbjct: 5   PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP  ++  E     + R F   +  R   +P    DERL+TV A+  L +    R+ +  
Sbjct: 65  LPTCIDDRELYTTSAARCFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123

Query: 135 KVDSIAAALILQEVLDR 151
           +VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140


>gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 138

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTKRIG+A++DP +  A+    +   ++      L +++ TE +  F++G P 
Sbjct: 2   RLMAFDYGTKRIGIAVTDPLQIVANALTTVHPDEIVDF---LKNYLQTEQVETFVVGKPR 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
            M+GS+         F+  +  +   +P    DER T+  A  ++    + + KR     
Sbjct: 59  QMDGSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGL 118

Query: 136 VDSIAAALILQEVLDRISFL 155
           VD+I+A +ILQ  +D  SFL
Sbjct: 119 VDTISATIILQSYMDSRSFL 138


>gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 144

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G +RIG+A+SDP    A P   + R+   Q A E+      E +   ++G PL+M
Sbjct: 1   MAIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G           F   M+  +  +P   +DERLTTVSA++ILI+ NV R++R   VD+ 
Sbjct: 61  SGQPSEMTSRAEKFA-RMLAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAA 119

Query: 140 AAALILQEVL 149
           AA ++L++ L
Sbjct: 120 AAQVLLEDYL 129


>gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4]
 gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4]
          Length = 139

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR+GLA++D     A+    +   +V      L  +I  E +  F+IGL
Sbjct: 1   MGRILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEV---LTYLEKYIAKEPVEKFVIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  MNG +   +   R F   +  +   +  V+ DER T+V A + +++  + +K R   
Sbjct: 58  PKQMNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNK 117

Query: 134 QKVDSIAAALILQEVLDRISFL 155
           + VD I+A +ILQ  L+ I  L
Sbjct: 118 ELVDKISATIILQSYLESIYNL 139


>gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
 gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
          Length = 144

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 2/135 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + ++DLGT R+G+A+SDP RRFA P   L  ++       +   + T  +   ++GL
Sbjct: 3   EGRVLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENW--IQRVRELVVTHQVTLVLVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +G+ GP V   R +   +      VP  F+DER TT  AQQ L+  +VSRK R Q+
Sbjct: 61  PTRTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQR 120

Query: 136 VDSIAAALILQEVLD 150
           VD +AAA++LQ  LD
Sbjct: 121 VDKVAAAVLLQGFLD 135


>gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12]
 gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12]
          Length = 138

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+      D G KRIG+A+       A P   +  +        +   +      A I+G
Sbjct: 2   PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P  ++G E     + R F   +  R   +P    DERLTTV A+  L      RK +  
Sbjct: 62  IPTCIDGREQYTTSAARRFAKELRKRFT-LPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120

Query: 135 KVDSIAAALILQEVL 149
           +VDSIAA +IL++ L
Sbjct: 121 EVDSIAACVILEQWL 135


>gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd
           KW20]
 gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           86-028NP]
 gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           22.1-21]
 gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittAA]
 gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittHH]
 gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittII]
 gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           R3021]
 gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittGG]
 gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
 gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031]
 gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
           ATCC 11116]
 gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase
 gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase
 gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase
 gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae
           86-028NP]
 gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           22.1-21]
 gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittAA]
 gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittHH]
 gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittII]
 gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           22.4-21]
 gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittGG]
 gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae
           10810]
 gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
 gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
 gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031]
 gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
 gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
           ATCC 11116]
          Length = 139

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A   P    +        +   +        I+GLPLNM
Sbjct: 6   LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E       R F + +  R   V     DERLTT  A+  + +    +  +  K+D +
Sbjct: 66  DGTEQDLTLRARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124

Query: 140 AAALILQEVLDRISF 154
           +A LIL+   +   +
Sbjct: 125 SACLILESWFEYAEY 139


>gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 138

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 2/137 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I ++D+GT RIG+A+SDP   FA        +       +L   +T+ +++  ++GLP
Sbjct: 3   RRIVALDMGTVRIGVAMSDPLGSFAQGVAVWDAEGDW--LSDLRDLVTSRDVSTVVVGLP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           +  NG++GP   +  A    + +    +  V WDER T+  A ++LI+ +VSRKKR  +V
Sbjct: 61  IRENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQV 120

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD + 
Sbjct: 121 DKVAATVILQGYLDSLR 137


>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
 gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
           DSM 5159]
          Length = 161

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
                +D+G +R+G+AISD     A P   +   +       L+  I+  +    ++GLP
Sbjct: 7   GRTMGLDVGGRRVGVAISDEMGMIASPLATIDLDRDG--LERLVELISRYDPVLIVVGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           + M G EG +   T+AF   + +R +  P VFWDERLT+ +A+++L D  V RK+R + V
Sbjct: 65  VTMRGREGSQAVETKAFAARLAER-IDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELV 123

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           D++AAAL+LQ  LD         G
Sbjct: 124 DAVAAALLLQSYLDAQRSQRGRHG 147


>gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
           SM9913]
 gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
           SM9913]
          Length = 149

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 3/143 (2%)

Query: 10  VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
            K++KP   + +   D GTK IG+AI       A     +  +       ++   +    
Sbjct: 3   KKTVKPQGERTVMGFDFGTKSIGIAIGQELTGSATSLKAVKAQDGIPNWDDIAVQVKEWQ 62

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               ++GLPLNM+G+        + F + + +    +     DERLTT  A+  L +   
Sbjct: 63  PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIAVHTQDERLTTADAKARLFERGG 121

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
            +      VD+++A +IL+   +
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFE 144


>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
           Agy99]
 gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M]
 gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
 gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
 gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
 gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 170

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 62/144 (43%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
                 ID+GT RIG+A SDP    A P   + R++  +    L + +        I+GL
Sbjct: 24  RGRRLGIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGL 83

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  +    G            +  R   +P    DERLTTVSAQ+ L +  V  K +   
Sbjct: 84  PRTLADRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAV 143

Query: 136 VDSIAAALILQEVLDRISFLESSK 159
           +D  AA  ILQ  LD+   L   +
Sbjct: 144 IDQAAAVAILQAWLDQRRTLAGGR 167


>gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
 gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
          Length = 139

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP +  A     +      Q    LL ++  E +   IIG 
Sbjct: 1   MSRILAIDYGKKRTGIAVTDPMQVIASGLTTVPTH---QLMDFLLGYVRQEAVERIIIGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  +   +     F++ +  +   +P   +DER T+V A Q ++   + +K R  K
Sbjct: 58  PKQMNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNK 117

Query: 136 --VDSIAAALILQEVLDRISFL 155
             VD I+A +ILQ  L+    L
Sbjct: 118 ALVDEISATIILQSYLEAKRGL 139


>gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
 gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
          Length = 139

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G K IG+A SD     AHP   + R+        + + ++       ++GLPL +
Sbjct: 5   LGLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGLPLEL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G EG R    R  +  +       V    WDER +T + +++LI+ ++SR+KR Q +D 
Sbjct: 65  SGQEGRRARRVRVLIDALRAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQVIDK 124

Query: 139 IAAALILQEVLD 150
            AAA ILQ  LD
Sbjct: 125 QAAAYILQGWLD 136


>gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519]
 gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii]
          Length = 139

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +D+G KRIG+A+SD     A P   L RK   +   E+   I  E+I   ++GL
Sbjct: 1   MRRILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P NM+ SEG +   TR F   ++++    +  ++ DERLT+  A+Q L  M +++ K  +
Sbjct: 61  PKNMDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKK 120

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA  ILQ  LD   
Sbjct: 121 LIDTAAAVHILQGYLDSKK 139


>gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
           29453]
 gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
           29453]
          Length = 154

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A  +     AHP   +  +   +  + +   IT       ++G
Sbjct: 11  PMGCALAFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVG 70

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E       R F H + + +  +P  + DER +++ A+++L    V  KK   
Sbjct: 71  LPVHADGTEHEVTALARKFGHRL-NARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKA 129

Query: 135 KVDSIAAALILQEVLDR 151
            +D +AA  ILQ   D 
Sbjct: 130 VLDQVAAQAILQSFFDN 146


>gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 171

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58
           M ++ ++ L + L     +  +D+G++ IGLA+SDP  R A P   + R   T  +    
Sbjct: 1   MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTV 116
           L S +   NI   +IG PL + G +G +    + F   +    R   + +V+WDERLT+V
Sbjct: 61  LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
           +   ++  M+++ ++R   VD ++A  ILQ  LD +S +E+ 
Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162


>gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
 gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
          Length = 138

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I S D GTKRIG+A++DP +  A+    +  K + +    L  ++ TE++  F++G 
Sbjct: 1   MARIMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEF---LKKYLLTESVETFVVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  M+G++       RAFV+ +      +P    DER T+  A   ++     +K R   
Sbjct: 58  PKQMDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDK 117

Query: 134 QKVDSIAAALILQEVLDRISF 154
             VD+++A +ILQ  ++++  
Sbjct: 118 ALVDTVSATIILQSYMEKLGM 138


>gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae
           T3T1]
          Length = 139

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG A+       A   P    +        +   +        ++GLPLNM
Sbjct: 6   IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E       + F + + + +  +     DERLTTVSA+  +      R     KVD I
Sbjct: 66  DGTEQDLTLRAKKFANRL-NGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124

Query: 140 AAALILQEVLDRIS 153
           +A LIL+   +  S
Sbjct: 125 SACLILESWFENYS 138


>gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 139

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG A+       A   P    +        +   +        ++GLPLNM
Sbjct: 6   IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E       + F + + + +  +     DERLTTVSA+  +      R     KVD I
Sbjct: 66  DGTEQDLTLRAKKFANRL-NGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124

Query: 140 AAALILQEVLDRIS 153
           +A LIL+   +  S
Sbjct: 125 SACLILESWFESYS 138


>gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 138

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D+GTKRIG+A+SDP    A P  ++  K        + S I ++N++  +IGL
Sbjct: 1   MSRILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ + G +G +V  T+ F   +     ++  VF DER TT  A++ L      +K     
Sbjct: 59  PITLKGLQGQQVEYTKEFAEKLKHYIPHINIVFIDERFTTSLAEKHLSQT-KKKKNIKDY 117

Query: 136 VDSIAAALILQEVLDRISF 154
           +DS++A  ILQ  LD +SF
Sbjct: 118 IDSLSAVFILQTYLDSLSF 136


>gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus
           PCC 6301]
 gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase
 gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 149

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G +RIG+A  D           +VR+        + +      +   +IGLP +M
Sbjct: 7   LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +   T+ F   +    + +P  + DERLT+  A++++  +  S  +    +D  
Sbjct: 67  DGSLGSQAKQTQRFATRLSKA-LQLPITYVDERLTSFEAEEMIKAVGRSPSRDKGAIDRK 125

Query: 140 AAALILQEVLDRIS 153
           AAALILQ+ LD   
Sbjct: 126 AAALILQQWLDEQR 139


>gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
           44728]
 gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
           44728]
          Length = 151

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
            P      +D+G  R+G+A+SDP    A P   + R    +         +   +   ++
Sbjct: 5   PPRGRRLGVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSV 64

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              +IGLP+ ++G E      +RA+   +      VP  F DERLTT  A + L +  V 
Sbjct: 65  VEIVIGLPVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSERGVK 124

Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
            K+R   VD  AA  ILQ  L++  
Sbjct: 125 GKRRKAVVDQAAAVEILQLWLEKQR 149


>gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
 gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
          Length = 146

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIG 74
            I  +D G K +G+A+SD     A     + R++ T+   T   +        I+  ++G
Sbjct: 2   RILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRI 133
           LPL M+   G R      F   M+ ++  +  + WDERLTTV+A ++L +M V  +  R 
Sbjct: 62  LPLLMSDEIGDRAQKAMEFGE-MLKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNRK 120

Query: 134 QKVDSIAAALILQEVLDRISFLE 156
             +D IAA  ILQE LD  S  E
Sbjct: 121 AVIDQIAAGFILQEYLDAQSAKE 143


>gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 137

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++D  +  A+    +    + +    L ++I  E +   IIGL
Sbjct: 1   MSRILAIDYGQKRTGLAVTDTLQLIANGLDTIPTHTLYEF---LCAYIEKEPVERIIIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P   NG     +     FV      +  VP  ++DER T+V A + +ID  + +K R   
Sbjct: 58  PRQTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDK 117

Query: 134 QKVDSIAAALILQEVLDRIS 153
             VD I+A +ILQ+ L+   
Sbjct: 118 ALVDKISATIILQDYLEHRR 137


>gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ]
 gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase
 gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum
           HZ]
          Length = 166

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I +L  +L+P + I  ID G ++IGLA+SDP    A P     R+ + Q   EL 
Sbjct: 1   MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELS 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + + +E+ A  ++G PL  +G EG      RAF   +I +   V     DER TT  A +
Sbjct: 61  AVLRSEDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLIKKS-GVSIYLHDERYTTAMASR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
              +  + RK+  +  D I+AAL+LQ+VLD
Sbjct: 120 ATREAGLRRKESQKIDDKISAALVLQQVLD 149


>gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
 gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
          Length = 164

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             +   D G +RIG+A+ +     A+P   +  +        +   +        I+GLP
Sbjct: 30  STVLCFDFGEQRIGVAVGEHLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+++G+E       + F   + + +  +P V  DER ++V A  +L    +  + + + +
Sbjct: 90  LSLDGAETSVTQLCKKFARRL-NGRFNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148

Query: 137 DSIAAALILQEVL 149
           D +AA  ILQ   
Sbjct: 149 DQVAAQTILQSYF 161


>gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus
           PCC 7942]
 gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase
 gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942]
          Length = 149

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G +RIG+A  D           +VR+        + +      +   +IGLP +M
Sbjct: 7   LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +   T+ F   +    + +P  + DERLT+  A++++     S  +    +D  
Sbjct: 67  DGSLGSQAKQTQRFATRLSKA-LQLPITYVDERLTSFEAEEMIKAEGRSPSRDKGAIDRK 125

Query: 140 AAALILQEVLDRIS 153
           AAALILQ+ LD   
Sbjct: 126 AAALILQQWLDEQR 139


>gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           3655]
 gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           6P18H1]
 gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           3655]
 gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           6P18H1]
          Length = 139

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A   P    +        +   +        I+GLPLNM
Sbjct: 6   LAFDFGTKSIGCAIGQSITGTAQTLPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E       R F + +  R   V     DERLTT  A+  + +    +  +  K+D +
Sbjct: 66  DGTEQDLTLRARKFANRLQGR-FGVNIHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124

Query: 140 AAALILQEVLDRISF 154
           +A LIL+   +   +
Sbjct: 125 SACLILESWFEYAEY 139


>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4]
 gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
 gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
          Length = 178

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
                   ID+G+ RIG+A SDP    A P   + R K           +   +      
Sbjct: 16  PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAV 75

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             I+GLP  + G  G        F   +  +   +P    DERLTTV+A + L +  VS 
Sbjct: 76  EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
           + +   +D  AA  ILQ  LD  S
Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159


>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1]
 gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
 gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
          Length = 178

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
                   ID+G+ RIG+A SDP    A P   + R K           +   +      
Sbjct: 16  PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAV 75

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             I+GLP  + G  G        F   +  +   +P    DERLTTV+A + L +  VS 
Sbjct: 76  EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
           + +   +D  AA  ILQ  LD  S
Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159


>gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
 gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
          Length = 146

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   + A P   +  +       E+   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        R F + + + +  +P  + DER ++V A+  L       K R  
Sbjct: 67  LPMHPDGTPHEMTQLARRFGNQL-NGRFNLPVTWVDERYSSVEAEAGLRAT----KGRAD 121

Query: 135 KVDSIAAALILQEVLDRIS 153
           ++D+ AA++ILQ+ LD +S
Sbjct: 122 RLDAEAASIILQQYLDGLS 140


>gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans
           WP3]
 gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans
           WP3]
          Length = 140

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ +   D GTK IG+AI       A P   +          E+ + IT       ++GL
Sbjct: 3   SKTVLGFDYGTKSIGIAIGQQLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       + F + + + +  V  V  DERLTT  A+  L +M   +     +
Sbjct: 63  PLNMDGTEQDITLRAKKFGNRL-NGRFGVKVVTQDERLTTADAKARLFEMGGYKALTKGQ 121

Query: 136 VDSIAAALILQEVLDR 151
           VD+++A LI++   + 
Sbjct: 122 VDAMSAVLIIESYFEN 137


>gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein
           [Rhodopirellula baltica WH47]
          Length = 173

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I            +AS+D GT RIG+AI DP    A P        + + A   +
Sbjct: 1   MPT-TITTAEDGFPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFI 59

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
               +E IAA+++GLP++ +G E  +   +R F    +     +P   +DER TTV+A  
Sbjct: 60  DLAKSERIAAWVVGLPIHCDGGESDKSKESRKFAA-WLKETTGLPTRLFDERFTTVAANA 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
            +     +RKK  Q+VD++AA ++L+  L+   +     G
Sbjct: 119 KIRQGKTTRKKTKQRVDAVAAQVLLESFLEACRYRGELAG 158


>gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma
           proteobacterium HTCC2143]
 gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma
           proteobacterium HTCC2143]
          Length = 153

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IGLAI       A+P   L  K       ++   I        +IGLPLN
Sbjct: 14  VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS        + F + +  R   +P    DERL++  A+  +I    SR  +   VDS
Sbjct: 74  MDGSFSELSRRAKKFANRLHGR-FGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132

Query: 139 IAAALILQEVL 149
           +AA +IL+  L
Sbjct: 133 LAAKIILESWL 143


>gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801]
 gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802]
 gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase
 gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801]
 gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802]
          Length = 139

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + R        +L  ++        ++GLP +M
Sbjct: 7   LGLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVVGLPYSM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F    I   + +P  + DERLT+V A+  L             +D  
Sbjct: 67  DGSLGFQAKQVQKFTRR-ISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDKGAIDRQ 125

Query: 140 AAALILQEVLDRIS 153
           AA +ILQ+ LD   
Sbjct: 126 AATIILQQWLDSRR 139


>gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
           CS-505]
          Length = 154

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+KR+G+A  D     A     + RK   +   E+   +    +   ++G+P + 
Sbjct: 13  LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSG 72

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F + +    + +P    DERLT+  A+Q+L+  N S       VD  
Sbjct: 73  DGSMGEQARRIQKFANRLAKA-LGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRK 131

Query: 140 AAALILQEVLD 150
           AA++ILQ+ LD
Sbjct: 132 AASIILQQWLD 142


>gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea
           34H]
 gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase
 gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea
           34H]
          Length = 148

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +   D G K IG+A+       A P   +           L  ++        ++GL
Sbjct: 11  QRTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEWQPDFIVVGL 70

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GSE       + F  N I  +  +   F DERLTT  A++ L      +  +   
Sbjct: 71  PLNMDGSEQQLTLDAKKFG-NRIHGRFGIQVEFQDERLTTADAKEQLFARGGFKNLKKDN 129

Query: 136 VDSIAAALILQEVLDR 151
           +D+ +A LI++   ++
Sbjct: 130 IDAESARLIIESYFEQ 145


>gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1]
 gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1]
 gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
 gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1]
 gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1]
 gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1]
 gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
          Length = 141

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G+K+IG+A+       A     L  +       ++   I      A ++GLPLN
Sbjct: 7   LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  +P    DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida
           KT2440]
 gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase
 gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida
           KT2440]
          Length = 141

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G+K+IG+A+       A     L  +       ++   I      A ++GLPLN
Sbjct: 7   LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  +P    DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittEE]
 gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           7P49H1]
 gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
 gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase
 gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           PittEE]
 gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           7P49H1]
 gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
          Length = 139

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A   P    +        +   +        I+GLPLNM
Sbjct: 6   LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+E       R F + +  R   V     DERLTT  A+  + +    +  +  KVD I
Sbjct: 66  DGTEQNLTLLARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKKGKVDGI 124

Query: 140 AAALILQEVLD 150
           +A LIL+   +
Sbjct: 125 SACLILESWFE 135


>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 151

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 1/151 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           ++ IEDL K       +  +DLG+KRIG++I D  +  A P   + +    +   EL   
Sbjct: 1   MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           I   +I   ++G P+NM+G+ G    S      N ID+ + +    WDERL+TV A  + 
Sbjct: 61  IEEYDIKGIVVGNPINMDGTLGRSSQSVNDVSDN-IDKAIDIDVCLWDERLSTVGAFNLS 119

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
             ++V+  KR + +D  AAA ILQ  +D ++
Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAIDFLN 150


>gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea
           ATCC 19718]
 gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase
 gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 148

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D G +RIG+AI +   R AHP   + +        ++   I        ++GL
Sbjct: 9   SGTVLAFDFGKRRIGVAIGEHELRMAHPLTTIDQSMTRPRFEKIAELIEAWQPVLLVVGL 68

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            ++ +G+E       R F   + + +  +P    DER TTV A+ +L ++ V+ KK+   
Sbjct: 69  SVHADGTEHEITRLCRRFARRL-EGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRPM 127

Query: 136 VDSIAAALILQEVLD 150
           +D IAA  ILQ   D
Sbjct: 128 LDQIAAQHILQTYFD 142


>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 169

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 57/141 (40%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   +D+G+ RIG+A SDP    A P   + R +  +    L            ++
Sbjct: 19  PGRGRRLGVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVV 78

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  +    GP           +  R    P    DERLTTVSAQ+ L    V  K++ 
Sbjct: 79  GLPRTLADRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQR 138

Query: 134 QKVDSIAAALILQEVLDRISF 154
             +D  AA  ILQ  LD+   
Sbjct: 139 AVIDQAAAVAILQSWLDQRRA 159


>gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
 gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
          Length = 146

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A     +  +       EL   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        + F + + + +  +P  + DER ++V A+  L       K R  
Sbjct: 67  LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEATLRAN----KGRAD 121

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASVILQQYLDGLS 140


>gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str.
           Israel]
 gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str.
           Israel]
          Length = 157

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    IE   + L  N+ I  +D G +++GLAISD     A P    +R+ + Q   EL 
Sbjct: 1   MLCESIEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELN 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           + +  E I A ++GLPL ++G EG      RAFV  +I +   +     DER TT  A +
Sbjct: 61  AILKREGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLIKKS-GIYVYLHDERYTTAMASR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
               + + RK+  +  D I+A LILQ+VLD
Sbjct: 120 ATESLGLRRKESQKVDDKISAVLILQQVLD 149


>gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
 gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
          Length = 146

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A P   +  +       E+   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        + F + + + +  +P  + DER ++V A+          K R  
Sbjct: 67  LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEATTRAN----KGRAD 121

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140


>gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619]
 gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619]
          Length = 141

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G+K+IG+A+       A     L  +       ++   I      A ++GLPLN
Sbjct: 7   LLGFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  +P    DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56]
          Length = 121

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  L+
Sbjct: 1   MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            F  TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K  +PFV+WDERL+TV+A++
Sbjct: 61  DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119

Query: 121 IL 122
            L
Sbjct: 120 TL 121


>gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 168

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             + + D G KRIG+A+ +   R AHP   +  +  T+    + + I        ++G P
Sbjct: 10  GTVLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRP 69

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +++G+        R F   +  R   +     +ERL++  AQ+ L    ++ +   + +
Sbjct: 70  TSLDGTPHAMTARCRRFADQLRGR-FGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHL 128

Query: 137 DSIAAALILQEVLDRI 152
           D++AA LILQ   D +
Sbjct: 129 DAVAAQLILQSYFDSV 144


>gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
           C6786]
          Length = 146

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+A+ +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F + + + +  +P  + DER ++V A+  L     S
Sbjct: 61  DALVVGLPLHPDGAPHEMTQQAKRFGNQL-NGRFNLPVSWVDERYSSVEARADLRARG-S 118

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
              R   VD+ AA +ILQ+ LD +     
Sbjct: 119 GADR---VDAEAARIILQQYLDELPDHHE 144


>gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 146

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       AH    L  +       ++ + I      A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
 gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
          Length = 197

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
             +D+GT RIG+++SDP    A P   L R         +L   +      A ++GLP+ 
Sbjct: 48  LGVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGLPMT 107

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G EG      R +  ++  R   +P    DERLTT +A + + +  +S + R   VD 
Sbjct: 108 LSGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARRGLVDQ 167

Query: 139 IAAALILQEVLD 150
            AA  ILQ  LD
Sbjct: 168 EAAVQILQHALD 179


>gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila
           L48]
 gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 141

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G+K+IG+A+       A     L  +       ++   I      A ++GLPLN
Sbjct: 7   LLGFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  +P    DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSERAEKFARRL-NGRYNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVD 125

Query: 138 SIAAALILQEVLD 150
           +IAAAL+LQ  L+
Sbjct: 126 AIAAALLLQGWLE 138


>gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
 gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
          Length = 142

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G +R+G+A  D     A     +VR        +L   +        ++GLP  M
Sbjct: 7   LGLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG  G +    + +    I + + +P  + DERLT+  A++ L        +    +D  
Sbjct: 67  NGDIGSQARQVQNYATR-IGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQ 125

Query: 140 AAALILQEVLD 150
           AAA+ILQ+ LD
Sbjct: 126 AAAIILQQWLD 136


>gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1]
 gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase
 gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease
           [Rhodopirellula baltica SH 1]
          Length = 173

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
                 +AS+D GT RIG+AI DP    A P          + A   +    +E IAA++
Sbjct: 12  FPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAKSERIAAWV 71

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP++ +G E  +   +R F    +     +P   +DER TTV+A   +     +RKK 
Sbjct: 72  VGLPIHCDGGESDKSKESRKFAA-WLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKT 130

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
            Q+VD++AA ++L+  L+   +     G
Sbjct: 131 KQRVDAVAAQVLLESFLEACRYRGELAG 158


>gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3]
 gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase
 gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3]
          Length = 202

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFI 72
           +P   I  +D+G+ R+G+A SDPG   A P   L R ++      +L+  +        +
Sbjct: 22  RPGVRI-GVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVV 80

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP  M+G EG  V   R +   + +R   VP  F DERLTTV+A + + +  V  + R
Sbjct: 81  VGLPRQMSGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRAR 140

Query: 133 IQKVDSIAAALILQEVLDRIS 153
              VD  AA  ILQ  LD   
Sbjct: 141 RSLVDQEAAVQILQHDLDSRR 161


>gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
 gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
          Length = 140

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
            I  ID G  RIG+A+SDP    A     +  K  + +    ++  +        I+G P
Sbjct: 2   RIIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGFP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR   T  F+  +  R   +  + WDERL+TVSA + + ++ V + K+   V
Sbjct: 62  KNMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHVV 121

Query: 137 DSIAAALILQEVLDRIS 153
           D IAA  ILQ  LD  +
Sbjct: 122 DQIAAVYILQGYLDSTA 138


>gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 146

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + IT     A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSEMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
          Length = 141

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
                ++D GTKR G+A+SD  +  A+    +    +      L +++  E++   I+GL
Sbjct: 1   MGRYLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTL---LDYLKTYLQKEDVERIIVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN      +   R FV  +      +   ++DER T+  A + ++D  + +  R  K
Sbjct: 58  PKQMNNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  ++ + 
Sbjct: 118 SLVDEISATIILQGYMESLR 137


>gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7]
 gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
 gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
 gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
 gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
          Length = 140

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A +D  +  A+    +   +V +    L  +I+ E +  F++GL
Sbjct: 1   MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  MN      +    AFV ++      +P  ++DER T+V A + +++  + +KKR   
Sbjct: 58  PKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117

Query: 134 QKVDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   +
Sbjct: 118 GLVDEISAVIILQAYLESKKY 138


>gi|260767462|ref|ZP_05876399.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972]
 gi|260617574|gb|EEX42756.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972]
          Length = 141

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              E+   I        +IGL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKALESITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD  +A +IL+   +R+
Sbjct: 121 NVDCQSAVIILESWFERL 138


>gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
           3043]
 gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase
 gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
           3043]
          Length = 148

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D GT+RIG+A+ +     A     L  +       ++ + +        ++GLPLN
Sbjct: 9   VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E       R F + +  R    P   +DER +T +A++I  D       R   VD 
Sbjct: 69  MDGTESDMSRRARKFGNRLHGR-FGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127

Query: 139 IAAALILQEVLDRISFLES 157
           IAA LIL+      +FL+ 
Sbjct: 128 IAAQLILESFFADDTFLQR 146


>gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
 gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
          Length = 141

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 77/143 (53%), Gaps = 5/143 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR+GLA+SDP    A     ++ +++ +    L ++++ E +  F++G 
Sbjct: 1   MGRILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRF---LEAYLSHEKVDLFVVGH 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  M+ S+   +   + F+  +  R  ++P V +DER T+V A + L++    +K R   
Sbjct: 58  PKQMDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDK 117

Query: 134 QKVDSIAAALILQEVLDRISFLE 156
             +D+++A +IL   +++   L+
Sbjct: 118 ALIDTMSATIILTSYMEQQRNLK 140


>gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase
 gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tomato T1]
 gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 146

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSEMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
 gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
          Length = 148

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +   D GTK IG+A+       A P               +   I        I+G 
Sbjct: 8   QRTLLGFDFGTKSIGIAVGQEITGTARPLVAFKANDGIPDWDLIEKQIKEWQPDLVIVGK 67

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E         F + +  R   V     DERLTT  A+  L +    +  +   
Sbjct: 68  PLNMDGTEQEITKRATKFANRLTGR-FNVKTEMHDERLTTKDAKARLFEEGGFKALQKGA 126

Query: 136 VDSIAAALILQEVLD 150
           +DS +A +IL+  ++
Sbjct: 127 IDSASAMVILESWME 141


>gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 154

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P     + D G  RIG+A        AHP   +  +   +    +   I        ++G
Sbjct: 9   PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+E       R F   +  R   +P  + DERLT++ A+ +L +  V  +K+  
Sbjct: 69  LPVHSDGTEHELTRLARKFGRRLHGR-FGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127

Query: 135 KVDSIAAALILQEVL 149
             DS+AA  ILQ   
Sbjct: 128 VSDSVAAQAILQGFF 142


>gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1]
          Length = 142

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIG 74
                 +D+G  R+G+A+ DP    A P   + R  +       +   +   ++   ++G
Sbjct: 5   RGRRLGVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVVLG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP N+ G +GP   + R F   +    + VP    DER+TTV A + L    V  +K+  
Sbjct: 65  LPRNLRGEDGPAARAAREFADAL-QAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQRS 123

Query: 135 KVDSIAAALILQEVLDRIS 153
            VD  AA  ILQ  LD+  
Sbjct: 124 VVDQAAAVQILQGWLDQHR 142


>gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 141

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID G  RIG+A +DP    AHP   + R +       ++  +    I   ++GLP+ M
Sbjct: 8   LGIDYGEARIGIAATDPVGIMAHPVETIHRHQTDG-ISRIVQLVQERGIRTLVLGLPVRM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G+EG      RAF   +      +P +F DE LTTV AQ+ L       K     +D +
Sbjct: 67  DGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNFRPIIDQV 126

Query: 140 AAALILQEVLDR 151
           AA  IL   LD 
Sbjct: 127 AAVEILNTWLDS 138


>gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a]
 gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction
           resolvase [Frankia alni ACN14a]
          Length = 205

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPLN 78
             +D+G+ R+G+A SDPG   A P   L R K       +L+  +        ++GLP  
Sbjct: 32  IGVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVVGLPRQ 91

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G EG  V   R +V  + +R   VP  F DERLTTV+A + + +  V  + R   VD 
Sbjct: 92  MSGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQ 151

Query: 139 IAAALILQEVLDR 151
            AA  ILQ  LD 
Sbjct: 152 EAAVQILQHDLDS 164


>gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
           6506]
 gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
           6506]
          Length = 170

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + R    +   +    +T   +   + GLP NM
Sbjct: 10  LGLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQVLVSGLPYNM 69

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+ G +    + +   +      +P  + DERLT++ A+Q+++   +S  +    +D  
Sbjct: 70  NGTLGFQARQVQKYASRLASALA-LPLEYVDERLTSIQAEQLMLTEKISPSRNKALIDRK 128

Query: 140 AAALILQEVLDRISFLESS 158
           AAA+ILQ+ LD    +   
Sbjct: 129 AAAIILQQWLDERREMGRW 147


>gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
           EO147]
          Length = 146

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+A+ +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F + M + +  +P  + DER ++V A+  L     S
Sbjct: 61  DALVVGLPLHPDGAPHEMTQQAKRFGNQM-NGRFNLPVSWVDERYSSVEARADLRARG-S 118

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
              R   VD+ AA +ILQ+ LD +     
Sbjct: 119 GADR---VDAEAARIILQQYLDELPDHHE 144


>gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC3088]
 gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC3088]
          Length = 139

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              +   D G ++IG+A+ +   + A P   L  +       +L + +     A  ++G 
Sbjct: 1   MSRVLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGE 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P NM+G++       R F  N I  +  V     DERL++  A+Q   +M      +   
Sbjct: 61  PSNMDGTDSDMAARARKFA-NRIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTP 119

Query: 136 VDSIAAALILQEVLD 150
           +D++AA +ILQ   +
Sbjct: 120 IDALAAMIILQSYFE 134


>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
 gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
          Length = 144

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLG+KRIG+A+SD     A     + R    +    +L  +    +   +IGLP 
Sbjct: 2   RILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +++G  G       A     +   +++P   WDERLTT+ A+++L+  ++SR+KR Q +D
Sbjct: 62  HLDGRLGEGAEEALA-WAAELREHLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVID 120

Query: 138 SIAAALILQEVLDRISFLESSK 159
            +AA LILQ  LD     ++ K
Sbjct: 121 KLAAGLILQAFLDNRRQTQAEK 142


>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
           Hartford]
 gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
 gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
           Hartford]
          Length = 154

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  ++   + L  N P+ +ID G+K++G+A+S+  R  A P   +           LL
Sbjct: 1   MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           S +    +   +IG+P++M+G+   + +    F        + +P    DERLTT +A  
Sbjct: 61  SIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEFTK-SINLPIYLQDERLTTKAANN 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
            L    + RK R    D++AA++IL+ VLD +  +
Sbjct: 120 FLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI 154


>gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
 gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
          Length = 145

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + +L   Q     D G KR+G+A     +  +     L           + + I   N+ 
Sbjct: 1   MTTLTTAQRYLCFDFGEKRLGVATGVRTQMSSQALTVLAVTNDQPDWKLIENLIREWNVE 60

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           AF++GLPLNM+ SE       R F + +  R   +P    DERL++   +  L ++   +
Sbjct: 61  AFVVGLPLNMDDSEQELTQKARKFANRLHGR-FGLPTHLHDERLSSAEVKDYLYEIGGYK 119

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           K +   +D+ AA LIL+   ++
Sbjct: 120 KLKQNPIDAYAAELILKSFFEQ 141


>gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 143

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + + D GTK IG+A+       A P   +           +            I+GL
Sbjct: 6   QRTVLAFDFGTKSIGVAVGQEVTGTASPLDAINAVDGIPNWDIVAKVFEQWQPDLAIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GS      + + F + + + K  VP    DERLTTV A+  L +M   +K   +K
Sbjct: 66  PLNMDGSFQQVTFAAKKFANRL-NAKYRVPIETVDERLTTVDAKARLFEMGGFKKLDKRK 124

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A LI +  +++
Sbjct: 125 IDSASACLIFESWVEQ 140


>gi|315181242|gb|ADT88156.1| Holliday junction resolvase-like protein [Vibrio furnissii NCTC
           11218]
          Length = 141

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              E+   I        +IGL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKALETITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD  +A +IL+   +R+
Sbjct: 121 NVDCQSAVIILESWFERL 138


>gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4]
 gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase
 gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4]
 gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 177

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
                  +ID+G+ RIG+A SDP    A P   + R K           +++ ++     
Sbjct: 16  PGRGRRIAIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAV 75

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             I+GLP  + G +G       AF   +      +P    DERLTTV+A + L +  V  
Sbjct: 76  EVIVGLPQTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKA 135

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
           + +   +D  AA  ILQ  LD  S
Sbjct: 136 RGQRPMIDQAAAVEILQGWLDERS 159


>gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
 gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
          Length = 137

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR GLA++DP +  A+    +      +    + ++I  E +   +IG P+
Sbjct: 2   RILSIDYGKKRTGLAVTDPLQIIANGLATV---STHELFTYIETYIQKEQVERIVIGKPM 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ--- 134
             NG     +     F +        +P  ++DER T+V A + +ID  V +K R +   
Sbjct: 59  QPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKENKG 118

Query: 135 KVDSIAAALILQEVL 149
            VD I+A +ILQ+ L
Sbjct: 119 LVDEISATIILQDYL 133


>gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 146

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis
           CGDNIH1]
          Length = 168

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS+  + DL   L  NQ +  ID G++ IG+A+SD     A P   + R K+   A E+ 
Sbjct: 3   MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +    E     IIGLPL+M+GS GP   + R +   + D    +P   WDER T+    Q
Sbjct: 63  AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWAIALSDA-TGLPAALWDERETSSRVHQ 121

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           +LI   ++ RK+R   VD +AAA++LQ  LD + 
Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALDALP 155


>gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 146

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + IT     A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
 gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 170

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 3/141 (2%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT---ALELLSFITTENIAA 70
                   ID+GT RIG+A SDP    A P   + R K  +T      L + +       
Sbjct: 16  PGRGRRIGIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVE 75

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+GLP  +        H        +  R    P    DERLTTVSAQ+ L +  V  +
Sbjct: 76  VIVGLPRTLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRAR 135

Query: 131 KRIQKVDSIAAALILQEVLDR 151
            +   +D +AA  ILQ  LD+
Sbjct: 136 GQKAVIDQVAAVGILQGWLDQ 156


>gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase
 gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 146

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRNNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae
           T7901]
 gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 146

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +  + I + D GT+ IG+A+     + A   P L  K       +L    +       ++
Sbjct: 5   RSEETILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+NM+GSE       R F + + + +      F+DERLTT +A++           R 
Sbjct: 65  GLPVNMDGSEMEMTRRARKFGNRL-NGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRA 123

Query: 134 QKVDSIAAALILQEVL 149
           + VDSIAA LIL+  +
Sbjct: 124 KPVDSIAARLILEGWM 139


>gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
 gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase
 gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
          Length = 141

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID G K IGLAISDP R  A        K        L   I   N++  ++G P+
Sbjct: 2   RVLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           ++ G E  +      +V   I   V +P  F DER TT+ A+++L++ ++ R+ R    +
Sbjct: 62  SLRGHENEKTKKIE-YVAERIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLKN 120

Query: 138 SIAAALILQEVLDRIS 153
             AA +ILQ+ LD +S
Sbjct: 121 KQAAVIILQKYLDSLS 136


>gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
 gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
          Length = 143

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + + D GTK IG+A+       A P   +           +            ++GL
Sbjct: 6   QRTVLAFDFGTKSIGVAVGQEVTGTASPLDAIKAVDGIPNWDVVAKVFEQWQPDLALVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+      + + F + +   K  VP    DERLTTV A+  L +M   +K   QK
Sbjct: 66  PLNMDGTFQQVTFAAKKFGNRL-SAKYRVPVETVDERLTTVDAKARLFEMGGFKKLDKQK 124

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A LI +  +++
Sbjct: 125 IDSASACLIFESWVEQ 140


>gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
 gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
          Length = 170

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPLN 78
             +D+GT R+G+A+SDP    A P   L R     +    +            ++GLPLN
Sbjct: 7   LGVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M G +     + RA+ + +   +  +  +  DERLT+VSA Q L    V+ ++  Q VD 
Sbjct: 67  MKGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQ 126

Query: 139 IAAALILQEVLD 150
            AA LILQ  L+
Sbjct: 127 QAAVLILQAALE 138


>gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 139

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I SID G KR GLA++DP +  A+    +    +      L ++   E +   I+G 
Sbjct: 1   MGRILSIDYGKKRTGLAVTDPMQIIANGLTTVSTVDL---WDFLQNYCKKEGVERIIMGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P   NG     +     F +        +P  ++DER T+V A + +ID  V +K R   
Sbjct: 58  PTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRREN 117

Query: 133 IQKVDSIAAALILQEVLDRISF 154
              VD ++A +IL++ +    +
Sbjct: 118 KGLVDEVSATIILEDWMSSHRY 139


>gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum
           STM815]
 gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase
 gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815]
          Length = 151

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A P   L  +        +   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+   R    + F + + + +  +P  + DER ++V A+  +     S  ++  
Sbjct: 67  LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWIDERYSSVEAEAGIR----SGTRQAG 121

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA +ILQ+ LD +S
Sbjct: 122 MLDAEAACIILQQYLDGLS 140


>gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           syringae FF5]
 gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase
 gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv.
           syringae B728a]
 gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit
           7]
 gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
 gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
 gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 146

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAAALILQEVLDRISFL 155
           +IAAAL+LQ  LD    L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143


>gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase
          Length = 150

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 8/149 (5%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFI----- 63
           +++      I  ID G  RIGLA SD  +  A P   +   KK  QT ++LL  I     
Sbjct: 1   MENKPKPSRILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCE 60

Query: 64  -TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
                I   +IGLPL M+G  G      + F   ++ +   +P   WDERLTTV A++ L
Sbjct: 61  TQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSL 119

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            +  ++RKKR + VD ++A++ILQ  LD 
Sbjct: 120 RESQLTRKKRSKVVDIVSASIILQSYLDS 148


>gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 138

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I S+D G KR G+A++DP +   +    +    +      LL +I  E +   ++G 
Sbjct: 1   MARILSVDYGKKRTGIAVTDPLQIICNGLVTVSSSTLVDF---LLDYIQKEEVELIVVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P   NG     +   + FV         +P V++DER T+V A + +ID  + +K R   
Sbjct: 58  PKQTNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDK 117

Query: 134 QKVDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  L+   
Sbjct: 118 ALVDEISATIILQSYLESKR 137


>gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
 gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
          Length = 153

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL------ELLSFITTENIAAFII 73
             +D+G  R+G+A SDP    A P   L R   T          EL++ I        ++
Sbjct: 10  LGVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+N+ G  GP   + +A+   + D    VP    DER++TV A + L +  V  K+R 
Sbjct: 70  GLPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRR 129

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146


>gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus
           elongatus BP-1]
 gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase
 gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1]
          Length = 151

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +DLG KRIG+A  D   + A     + R+       +L        +   I+GLP 
Sbjct: 3   SVLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPY 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++G  G +    +      I   + +P  + DERLT+  A++IL     S +     VD
Sbjct: 63  TLDGQLGSQARQVQHLAEK-IGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVD 121

Query: 138 SIAAALILQEVLDRIS 153
            IAAALILQ+ LD  S
Sbjct: 122 QIAAALILQQWLDARS 137


>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
           12885]
 gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
           12885]
          Length = 326

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLG++ IG+AISDP    A P   L R+   + A ++   +        ++G P 
Sbjct: 2   RWLGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            ++G+ GP   +   F   +  R+  VP    WDERL+TV A+++LI  ++SR++R Q +
Sbjct: 62  RLDGTRGPEAEAAERFADAL--REAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQII 119

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           D +AA +ILQ  L          G
Sbjct: 120 DRMAATVILQAFLQSQRRQRDGGG 143


>gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum
           ATCC 12472]
 gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase
 gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 137

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D G +RIG+A+ D      HP   +      +    +   I        ++GLP++ 
Sbjct: 1   MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHP 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138
           +G E      +R F + +  R   +P    DER T+V A+Q+L +  V + +K+   +D 
Sbjct: 61  DGEEHELSALSRRFANRLKGR-FGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQ 119

Query: 139 IAAALILQEVLDR 151
           +AA  IL    ++
Sbjct: 120 VAAQAILAGWFEQ 132


>gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
           str. Boryong]
 gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase
 gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
          Length = 157

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  I + +++    + I  ID G K++G+AIS+     A P   ++     +   ++ 
Sbjct: 1   MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDR-VNKIQ 59

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                 NI A +IGLP  ++G+E  + H  + F + + ++ + +P    DERLT+ +A  
Sbjct: 60  EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           +L   N+ RK R    D +AA++IL+  L R+   +S
Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRMQNSKS 155


>gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 155

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTEN------IA 69
           + I S+D G  RIG+AISD  +  A     +   KKV +T  +L+  I          I 
Sbjct: 7   KRIVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIE 66

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++GLPL M+G +G +      FV  +      +P V WDERLTTV A++ L + + +R
Sbjct: 67  EIVVGLPLLMSGKKGFQADEVLHFVE-LFKAATPIPIVTWDERLTTVQAERALREGSFNR 125

Query: 130 KKRIQKVDSIAAALILQEVLD 150
           KKR + +D++AA LILQ  LD
Sbjct: 126 KKRSKVIDAVAAVLILQNYLD 146


>gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13]
          Length = 140

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R GLA  D     A P   +          +             ++G P N
Sbjct: 3   ILAVDFGDARTGLACCDRSELLASPAGVISETDFEVCIQKTAEAAREHRAEQIVVGYPKN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R      F   +      +  V WDER TTVSA + L   N   KKR   VD+
Sbjct: 63  MNGTIGERAEKCALFAEKL-RTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKRKAVVDA 121

Query: 139 IAAALILQEVL 149
           +AA +IL+  L
Sbjct: 122 VAATIILESYL 132


>gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium
           genitalium ATCC 33030]
 gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium
           genitalium ATCC 33030]
          Length = 167

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69
           P + I  ID+GT RIG+A SD     A P   + R      +       LL  I+  +  
Sbjct: 15  PGRRI-GIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDAV 73

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             ++GLP ++ G+    V   +     +  R   VP  F DERLTTV A   L    V+ 
Sbjct: 74  EVVVGLPRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVNA 133

Query: 130 KKRIQKVDSIAAALILQEVLD 150
           +     +D  AA  ILQ  LD
Sbjct: 134 RDGRAVIDQAAAVAILQSWLD 154


>gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
           E1]
 gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
           E1]
          Length = 141

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I ++DLGT RIG+A++DP   FA                +L   +        ++GL
Sbjct: 1   MKRIIALDLGTVRIGVAVTDPLGTFAQGVECWDAASGW--MGKLGELMAQYGTDRLLLGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +G+EG      R     +  R   V   FWDER T+  AQ  +I+ ++SR+KR  K
Sbjct: 59  PRKEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGK 118

Query: 136 VDSIAAALILQEVLD 150
           VD IAA+LILQ  +D
Sbjct: 119 VDQIAASLILQNFID 133


>gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
 gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
          Length = 161

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I + D G KR+G+AI +     AHP   +  +   +  + +   I T     F++G+
Sbjct: 20  EGSILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGM 79

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+ +G        ++ F   +  R   +P V  DER T+  A  IL +  V  +++   
Sbjct: 80  PLHSDGIVHELTQLSQRFARRLAGR-FNIPVVMQDERYTSQIASTILREAGVVGREQKSV 138

Query: 136 VDSIAAALILQEVLDR 151
           +D IAA  ILQ   D 
Sbjct: 139 LDQIAAQQILQSFFDE 154


>gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 142

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + ++DLG  RIG+A+SDP R FA P   L  ++     L++   +   ++   ++GL
Sbjct: 5   MGRVMALDLGEVRIGVALSDPSRSFASPLEVLKMEEGWP--LKVKELVERNSVTLIVVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+  +GS GP V     ++  +      V  V  DER TT  AQ+ L++ +V R+KR  K
Sbjct: 63  PIRTDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRKGK 122

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AAAL+LQ+ L+   
Sbjct: 123 VDKVAAALMLQDYLNSRR 140


>gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
 gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
          Length = 146

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A P   +  +        L   I      A ++G
Sbjct: 7   REATLLAFDYGVKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+   R    + F + + + +  +P  + DER ++V A+  +   N     R  
Sbjct: 67  LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDELS 140


>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 163

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+ RIG+A SDP    A P   + R +       L        +   ++GLP ++
Sbjct: 9   LGVDVGSVRIGVARSDPSGLLATPVETVRRGRG--DLDRLAEIAAEYEVVEIVVGLPTSL 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG    + R F   +  R   +P   +DERLTTV+AQQ L    V  K +   VD  
Sbjct: 67  SGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVVDQA 126

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA ++LQ  LD         G
Sbjct: 127 AAIVLLQAALDAERATGRPPG 147


>gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria
           bacterium BBFL7]
 gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria
           bacterium BBFL7]
          Length = 139

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP +  A     +   +++     L  ++ TE++   +IG 
Sbjct: 1   MSRILAIDYGKKRTGIAVTDPMQIIASGLTTVATHELSVF---LEKYLNTEDVETIVIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  M+ ++        AF   + ++   +     DER T+  A Q +ID  +S+ KR  K
Sbjct: 58  PKQMDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD IAA +ILQ  +DR S
Sbjct: 118 ALVDEIAATIILQTYMDRKS 137


>gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase
 gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 145

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G KRIG+A+SDP    A P  F++     +   ++   I    I+  +IGL
Sbjct: 1   MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           PL + G EG +   T+ FV N+ +     +  +F DER T+  A++ L+     +K + +
Sbjct: 59  PLTLKGEEGEQARYTKEFVENLKNHIPQDIEIIFVDERFTSSLAEKTLLQ--TKKKNKKE 116

Query: 135 KVDSIAAALILQEVLDRISF 154
           K+DS++A  ILQ  LDR+SF
Sbjct: 117 KIDSLSAVFILQTYLDRLSF 136


>gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
           7335]
 gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
           7335]
          Length = 144

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG KRIG+A  D     A     L +       + L + I   ++   ++GLP  M
Sbjct: 5   LGLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTM 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G  G +    + F H +  + + +P  F DERLT+  A+Q+L+    S     + +D  
Sbjct: 65  DGQIGFQAKKIQKFAHRL-SKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRK 123

Query: 140 AAALILQEVLDRIS 153
           AAA+ILQ+ LD   
Sbjct: 124 AAAIILQQWLDERR 137


>gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
 gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
          Length = 140

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  R+G+A+SDP  R A P   L  ++V   A    S +        + G PL
Sbjct: 2   RVLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++G EGP+          + DR   +P    DERL++  A++IL    +S K    KVD
Sbjct: 62  TLSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKVD 120

Query: 138 SIAAALILQEVLDR 151
            +AA+L LQ  LDR
Sbjct: 121 MVAASLFLQAWLDR 134


>gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
 gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
          Length = 143

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +   + I   D GT+RIG+A+ +   R A     L  +        +   +       F+
Sbjct: 1   MSSQRLILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+G+E       R F   +  R   +P    DER +T  A+ I  D       R
Sbjct: 61  VGLPLNMDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYR 119

Query: 133 IQKVDSIAAALILQEVL 149
              VD +AA LIL+  L
Sbjct: 120 DDGVDGLAAVLILEGWL 136


>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
 gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
 gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
 gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
 gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
 gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
          Length = 169

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 1/148 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
                   ID+G+ R+G+A SDP    A P   + R+K   +    L   +T       +
Sbjct: 17  PGRGRRIGIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP  +    GP  H        +  R   VP    DERLTTVSAQ+ L +  V  K +
Sbjct: 77  VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
              +D +AA  ILQ  LD+     ++ G
Sbjct: 137 RAMIDQVAAVGILQSWLDQRRAALAAPG 164


>gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase
 gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 154

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M +  +  +   L  +Q +  +D G K IGLA+SD     A P   L R K++  A E+ 
Sbjct: 1   MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIR 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                E +   + GLPL+M+GS GP   + R ++ ++ ++ V +P   WDERL++ +  +
Sbjct: 61  RIAAREGVGGLVSGLPLSMDGSFGPAAQAARDWMISLSEQ-VGLPAAMWDERLSSSAVNR 119

Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
           +LI D +++R++R + VD +AA+ +LQ  LD
Sbjct: 120 MLIQDADMTRQRRAELVDKLAASYMLQGALD 150


>gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999]
          Length = 137

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
                + D GTK IG+A+       A P   +           +          A ++GL
Sbjct: 1   MSTYLAFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+G+E       R F    I  +        DERLTT  A+  L ++   +K    K
Sbjct: 61  PLNMDGTEQEMTLRARKFGRR-ISARCKSQVFEVDERLTTTDAKARLFELGGYKKLSKDK 119

Query: 136 VDSIAAALILQEVLDR 151
           VDS++A +I +   + 
Sbjct: 120 VDSVSACVIFEAWCES 135


>gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
           12042]
 gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
           12042]
          Length = 139

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
            + I  +DLG++ +G+A+SDP    A                    +          F++
Sbjct: 1   MERIMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKELGAVKFVL 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP +MNG  G R   +  F   + +    +P +  DERLTT +A++ILI  +VSRKKR 
Sbjct: 61  GLPKHMNGDVGIRGQISLDFKAKL-EAACGLPVILQDERLTTAAAERILISADVSRKKRK 119

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D +AA  ILQ  LD+  
Sbjct: 120 AVIDQMAAVQILQSYLDQKR 139


>gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107]
 gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus
           Ueda107]
          Length = 143

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + + + D GTK IG+A      R A   P L  +       E+ + + T      ++GLP
Sbjct: 3   KTLLAFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+GSE       R F  N    +  V     DERL++  A+  +++   SR  R   V
Sbjct: 63  LNMDGSESELSARARKFA-NRTQGRFGVKVEMVDERLSSFEAKGEVMERGGSRDYRHNPV 121

Query: 137 DSIAAALILQEVLDR 151
           DSIAA LIL+  L+R
Sbjct: 122 DSIAARLILEAWLER 136


>gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina
           MBIC11017]
 gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase
 gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina
           MBIC11017]
          Length = 144

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 16  NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
            Q I    +DLG +RIG+A  D     A     + R   T+    L   +    +   ++
Sbjct: 1   MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVV 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  M G  G +   T+     +    + +P  F DERLT+  A+ ++ +  ++  ++ 
Sbjct: 61  GLPYTMKGEVGTQAQKTQKLAKRIAKA-LDLPLDFIDERLTSHEAESMMREQRINPAEQK 119

Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
             +D  AAALILQ  LD+  +L S+
Sbjct: 120 GMIDRKAAALILQRWLDQKPWLSST 144


>gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
 gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
           AFC27]
 gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase
 gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
 gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
           AFC27]
          Length = 152

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)

Query: 14  KPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
            P++P  +   D G + IG+A+       A+P   L   +      ++   I   N    
Sbjct: 9   SPSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLL 68

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           I+GLPLNM+ SE     + R F H +  R   +   + DERL+TV A++ L  +  S   
Sbjct: 69  IVGLPLNMDQSEQFLTKAARRFGHRLHGR-YGLAVEWVDERLSTVEARERLN-IKSSASG 126

Query: 132 RIQKVDSIAAALILQEVL 149
           R Q +D +AA  ILQ  L
Sbjct: 127 RRQGIDQMAAQCILQTWL 144


>gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_5R]
 gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 139

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   ++D+G  RIG+A SD     A P   + R+K+      ++     EN  + ++G+P
Sbjct: 3   KKYLALDVGDVRIGVAKSDIMGIIASPLETIDRRKMKP-VKRIIELCEQENTKSIVVGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
            +++GSE  +    R F+H +      V     DER TTV+A QIL +MN     ++ + 
Sbjct: 62  KSLDGSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMNRKGALEKRKV 121

Query: 136 VDSIAAALILQEVLD 150
           VD +AA+LILQ+ L+
Sbjct: 122 VDKVAASLILQQYLN 136


>gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           D12]
 gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D12]
 gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D12]
          Length = 139

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 2/135 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   ++D+G  RIG+A SDP    A P   + R+K  +    ++     EN  + ++G+P
Sbjct: 3   KKYLALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
            +++GSE  +    R F+H +      V  +  DER TTV+A +IL +MN     ++ + 
Sbjct: 62  KSLDGSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMNRKGALEKRKV 121

Query: 136 VDSIAAALILQEVLD 150
           VD +AA+LILQ+ L+
Sbjct: 122 VDKVAASLILQQYLN 136


>gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
 gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
          Length = 161

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLPL 77
           D+GT R+G+A+SDP    A P   L R     +       E+++          I+GLP 
Sbjct: 2   DVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +++G EGP   + R +   +  R   V     DERLT+VSA + L D  V+ +++   VD
Sbjct: 62  SLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVVD 121

Query: 138 SIAAALILQEVLDR 151
             AA LILQ  LD 
Sbjct: 122 QAAAVLILQAALDE 135


>gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
           69.14]
 gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
           69.14]
          Length = 141

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              E+   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   +P    DERL+T  A+  L      +     
Sbjct: 62  PTDLHGKDLDTITPRAKKFANRLHGR-FGLPVELHDERLSTAEARSELFAHGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDR 151
            +D  +A +IL+   +R
Sbjct: 121 NIDCQSAVVILESWFER 137


>gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 138

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID GTKR+GLA++DP +  A     +  K V Q    L  +   E I  F++G+P 
Sbjct: 3   RIVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQF---LKDYHEQEGIELFVVGMPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            ++G+E        AF++ +            DER T+  A   +I    ++K R +K  
Sbjct: 60  RLDGTESHATKHVEAFLNLLKKNFPDTDIETHDERFTSKIALNAMIAGGTTKKYRREKGN 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D ++A +ILQ  L+++ 
Sbjct: 120 IDKVSAVVILQSYLEKMQ 137


>gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase
 gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 137

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLG  RIGLA++D   R A     +VR+   +    +        +   ++GLPL
Sbjct: 2   RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGP     R F   + +  + VP   +DERL++  A+  L    VS + +  +VD
Sbjct: 62  NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQVD 120

Query: 138 SIAAALILQEVLDRIS 153
           + AAA+ILQ  LDR +
Sbjct: 121 AEAAAVILQGWLDRRA 136


>gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 138

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I S+D G KR G+A++DP +   +    +    +      LL +   E +   ++G 
Sbjct: 1   MARILSVDYGQKRTGIAVTDPLQIICNGLVTVSSSTLVDF---LLDYTKREEVELIVVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P   NG     +   R FV         +P V++DER T+V A + +ID  + +K R   
Sbjct: 58  PKQTNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDK 117

Query: 134 QKVDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  L+   
Sbjct: 118 ALVDEISATIILQSYLESKR 137


>gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
 gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
          Length = 151

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 5/145 (3%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTE 66
            +    +    +D+GT RIG+A  DP    A P   +               L   I   
Sbjct: 3   AAWTRGRR-LGLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEY 61

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
           +    ++GLP ++ G E       R+F   +      VP    DERLTTV+A   L    
Sbjct: 62  DAVGVVVGLPTSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAG 121

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
            + +K+   +D  AA ++LQ  +D 
Sbjct: 122 RNTRKQRDVIDQAAAVVLLQAWIDS 146


>gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
           15436]
 gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
           15436]
          Length = 155

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 65/131 (49%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G  RIG+A++DP  + + P   L          ELL+ I  +     +IG+P+++
Sbjct: 8   IGVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHL 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG EG      R F + +      +     DERLTT  A   L +M V  + R  K+D +
Sbjct: 68  NGKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQL 127

Query: 140 AAALILQEVLD 150
           AA++IL+  ++
Sbjct: 128 AASIILENAIE 138


>gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 163

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  +  ID G KR+GLA++D G R A PRP L R        E+      E + A ++GL
Sbjct: 28  NVRLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGL 87

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ M+G E       R     +  +   +     DERLT+  AQ  L +  VS KK   K
Sbjct: 88  PIAMDGEETDLSRQVRNLARKITSK-TGLKVHLMDERLTSAEAQARLREAGVSSKKMKGK 146

Query: 136 VDSIAAALILQEVLDR 151
           +DS AA LIL+  L R
Sbjct: 147 LDSGAAVLILEAYLGR 162


>gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           D11]
 gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D11]
 gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D11]
          Length = 147

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++A  +       +    ++G+
Sbjct: 1   MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL ++N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
            VD +AA++ILQ  LD  ++ FLE  K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146


>gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
 gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
          Length = 146

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A P   +  +        L   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+   R    + F + + + +  +P  + DER ++V A+  +   N     R  
Sbjct: 67  LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121

Query: 135 KVDSIAAALILQEVLDRI 152
            +D+ AA++ILQ+ LD +
Sbjct: 122 MLDAEAASIILQQYLDGL 139


>gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
 gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase
 gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
          Length = 156

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTEN--IAAFIIGLP 76
             ID G  RIG+A SDP    A P   + R K        +L+    E   +   ++GLP
Sbjct: 7   IGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLP 66

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +++G EGP     R F   +  R   VP    DER+TTVSA+ +L D   +  KR   V
Sbjct: 67  RSLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVV 126

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           D  AA LILQ  LD      ++ G
Sbjct: 127 DQAAAVLILQHALDTERATGAAPG 150


>gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
           str. Ikeda]
 gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase
 gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 157

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I  I + +++    + I  ID G K++G+AIS+     A P   +      +   ++ 
Sbjct: 1   MIINSIIEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTIFATNQDR-INKIQ 59

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                 NI A +IGLP  ++G+E  + H  + F + + ++ + +P    DERLT+ +A  
Sbjct: 60  EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
           +L   N+ RK R    D +AA++IL+  L R+   +S
Sbjct: 119 LLKMGNIKRKVRNAIDDRVAASIILEGTLKRMQNSKS 155


>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
 gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
          Length = 147

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++   +       +    ++G+
Sbjct: 1   MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL ++N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
            VD +AA++ILQ  LD  ++ FLE  K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146


>gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae
           HRC/581]
 gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae]
          Length = 141

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFII 73
            + I ++DLGTK  G AI+DP    A            + Q  L++        I   ++
Sbjct: 4   KKRILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGKIVL 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G PL MNG++ P        + +++ +   +P V  DERL+T  A  ILI  NVSRKKR 
Sbjct: 64  GYPLYMNGNKAPHTLLVEK-MSSILKQNFQIPVVLQDERLSTSQAHDILILANVSRKKRK 122

Query: 134 QKVDSIAAALILQEVL 149
           + +D +AA +IL+  L
Sbjct: 123 KVIDKLAAQIILERYL 138


>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
 gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1]
 gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
 gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1]
          Length = 175

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 1/142 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
                   ID+G+ RIG+A+SDP    A P   + R +   +    L + +        +
Sbjct: 23  PGRGRRLGIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVV 82

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP  +    G            +  R   VP    DER TTV+AQ+ L +  V  + +
Sbjct: 83  IGLPRTLGNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQ 142

Query: 133 IQKVDSIAAALILQEVLDRISF 154
              +D  AA  ILQ  LD+   
Sbjct: 143 KSMIDQAAAVGILQNWLDQRRA 164


>gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP
           101886]
 gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP
           101886]
          Length = 143

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q +   D GTK IG+AI       A P   L  K    +   + + +        ++GLP
Sbjct: 5   QTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVVVGLP 64

Query: 77  LNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           L+++G E        R F + +  R   V     DERLTT  A+  L +    +     +
Sbjct: 65  LDLHGGELETITPRARKFANRLKGR-FGVNVELHDERLTTTEARASLFEYGGYKALGKGE 123

Query: 136 VDSIAAALILQEVLDR 151
           +DS +A +I++   + 
Sbjct: 124 IDSQSAVIIVESWFEN 139


>gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
 gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
          Length = 139

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP    A+    +   ++ +    L  +I  E ++  +IG 
Sbjct: 1   MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEF---LNQYIAKEAVSQLVIGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  NG     +     FV+        +P  ++DER T+V A Q +I   V +K R   
Sbjct: 58  PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134


>gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18]
 gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18]
          Length = 139

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP    A+    +   ++ +    L  +I  E ++  +IG 
Sbjct: 1   MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEF---LNQYIVKEAVSQLVIGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  NG     +     FV+        +P  ++DER T+V A Q +I   V +K R   
Sbjct: 58  PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134


>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
 gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 164

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 10/146 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-----VTQTALELLSFITTENIA 69
           P +    +D+GT RIG+A+SDP    A P   + R         +    ++      ++ 
Sbjct: 16  PGRR-LGLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVV 74

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I+GLP  ++GS G  V   +         +    V VP  + DER+TTV AQ  L D 
Sbjct: 75  EVIVGLPRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDA 134

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
            +S K+    +D  AA  ILQ  LD+
Sbjct: 135 GISVKEGRSVIDQAAAVEILQTWLDQ 160


>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
 gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 167

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 60/147 (40%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   ID+G+ RIG+A SDP    A P   + R +  +    L + +T       ++
Sbjct: 19  PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 78

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  +    G            +  R    P    DERLTTV+AQ+ L    V  K++ 
Sbjct: 79  GLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 138

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             +D  AA  ILQ  LD+        G
Sbjct: 139 AVIDQAAAVAILQSWLDQRRAATREAG 165


>gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17]
 gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
 gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17]
 gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
          Length = 139

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR GLA++DP +  A+    +      +    L +++  E +   +IG P 
Sbjct: 2   RIVSIDYGKKRTGLAVTDPLQIIANGLATV---SSVELFGFLETYVKKEGVERIVIGRPT 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR---IQ 134
            MNG     +     F +        +P  ++DER T+V A + +ID  V +K R     
Sbjct: 59  QMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQENKG 118

Query: 135 KVDSIAAALILQEVL 149
            VD I+A +ILQ+ +
Sbjct: 119 LVDEISATIILQDYM 133


>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_33]
 gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_33]
          Length = 147

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++   +       +    ++G+
Sbjct: 1   MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL ++N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
            VD +AA++ILQ  LD  ++ FLE  K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146


>gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
 gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
          Length = 154

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
             K LK    I ++D G  R G+A++D  +  A     +   K  +    L  +++ EN+
Sbjct: 13  FAKKLK-LGRIVALDYGKVRTGIAVTDELQLIASGLTTV---KTVELISFLKKYVSEENV 68

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             F++G P  M+ +        + F+ ++    + +P    DER T+  A Q +ID  + 
Sbjct: 69  EKFVVGEPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIK 128

Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151
           +K+R  K  VD I+A LILQ  L++
Sbjct: 129 KKQRKNKALVDEISATLILQAYLNK 153


>gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
           F0264]
 gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
           F0264]
          Length = 138

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    +D+G  RIG+A SDP    A     + R  V      +   ++ E     + GL
Sbjct: 1   MKKFIGLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNP-VQRIKEILSDEGTKKIVAGL 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P +++G++  +      FV  + +    +  +  DER TT  A+  L +    + K+R +
Sbjct: 60  PKSLDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYLKNYSKKNGKERRK 119

Query: 135 KVDSIAAALILQEVLDRIS 153
            VD +AA++ILQ+ LDRI 
Sbjct: 120 VVDMVAASIILQKYLDRIK 138


>gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5]
          Length = 137

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR G+A+SDP R  A     +  K +      L  +   E++   ++G 
Sbjct: 1   MGRILAIDYGTKRTGIAVSDPLRLIAGGLETVETKGLEAW---LAKYFAAEDVTTIVVGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  M+G+              +         VF+DER T+V A + +++  + R  R  K
Sbjct: 58  PTQMDGTPSETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMARRNK 117

Query: 136 --VDSIAAALILQEVLD 150
             VD I+A +ILQ  ++
Sbjct: 118 ALVDKISATIILQSYME 134


>gi|258620730|ref|ZP_05715765.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573]
 gi|258625614|ref|ZP_05720496.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603]
 gi|262403908|ref|ZP_06080465.1| putative Holliday junction resolvase [Vibrio sp. RC586]
 gi|258582116|gb|EEW06983.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603]
 gi|258586928|gb|EEW11642.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573]
 gi|262349870|gb|EEY99006.1| putative Holliday junction resolvase [Vibrio sp. RC586]
          Length = 140

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG AI       A P              E+   I        I+GL
Sbjct: 2   SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLETITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDR 151
            VD  +A +IL+   + 
Sbjct: 121 NVDCQSAVIILESWFES 137


>gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
 gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
          Length = 141

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++G 
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGY 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTTEARAELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D  +A +IL+   + +
Sbjct: 121 NIDCQSAVVILESWFESL 138


>gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           BCC215]
          Length = 146

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+A+ +   R A     +      Q    +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+          F + + + +  +P  + DER ++V A+  L      
Sbjct: 61  DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
                 +VD+ AA +ILQ+ LD +     
Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144


>gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
 gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
          Length = 139

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP R  A+    +    +      L  ++  E +   +IG 
Sbjct: 1   MGRILAIDYGKKRTGLAVTDPLRIIANGLATIPTSDI---FDYLTQYVAKEPVDQLVIGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  NG     +     FV+        +P  ++DER T+V A Q +I   V +K R   
Sbjct: 58  PIQPNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134


>gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1]
 gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 142

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
             +   ++D+GTKRIG+A SDP     +P P++          ++   +   +I   +IG
Sbjct: 2   KGKRTLALDVGTKRIGVAYSDPLGISTNPLPYI--DNDEHAFEKIRDVVREYDIGTVVIG 59

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           LPL + G EG +   T+ F   +       V   F DER TT  A++ L +    R K+ 
Sbjct: 60  LPLTLKGKEGTQAKLTKEFAQKLKGYLPEDVEIEFVDERFTTSLAEKQLKETG-KRSKKR 118

Query: 134 QKVDSIAAALILQEVLDRISFL 155
           +K+DS++A  IL+  L++  ++
Sbjct: 119 EKIDSLSAVYILKTYLEKKQYM 140


>gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           LO28]
          Length = 116

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 3/117 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61  NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKK 116


>gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 156

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++  + +   D+G  RIG+A  DP    A P   L R        +    +        I
Sbjct: 1   MRRGRRV-GFDVGQVRIGVAQCDPEGILATPVETLWR--GESDIDDAAQIVRDCEAMEVI 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+G+EG      RA+   + +     P    DERL+TV+A   LI    + +K+
Sbjct: 58  VGLPLNMDGTEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQ 117

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
              VD  AA +IL   L+      ++ G
Sbjct: 118 RSIVDQAAAVVILNTALEMEQRTGNAPG 145


>gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 141

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D  +A +IL+   + +
Sbjct: 121 NIDCQSAVVILESWFESL 138


>gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
           str. 1/2a F6854]
          Length = 117

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            I  +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GL
Sbjct: 2   RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           P NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 62  PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117


>gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Desmospora sp. 8437]
          Length = 141

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 2/133 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +DLG KR+G+A+SDP    A     L R+        L   I    + A ++GLP 
Sbjct: 3   RIMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS G +  + R     + + +  +P   WDERL+TV+ ++ LID ++SR+KR + VD
Sbjct: 62  NMDGSIGAKGEACRQLGREL-EERFQIPVELWDERLSTVAVERTLIDADLSRRKRRKVVD 120

Query: 138 SIAAALILQEVLD 150
            +AA+ ILQ  L+
Sbjct: 121 RMAASWILQGYLE 133


>gi|27364899|ref|NP_760427.1| Holliday junction resolvase-like protein [Vibrio vulnificus CMCP6]
 gi|320155282|ref|YP_004187661.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O]
 gi|32130025|sp|Q8DCB1|RUVX_VIBVU RecName: Full=Putative Holliday junction resolvase
 gi|27361044|gb|AAO09954.1| Putative Holliday junction resolvase [Vibrio vulnificus CMCP6]
 gi|319930594|gb|ADV85458.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O]
          Length = 140

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              E+   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKALETITPRAKKFAQRLQGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 121 NVDCQSAVIILESWFE 136


>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
 gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
          Length = 138

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID G KR+GLAISD       P   L R         ++  I  E++ A ++GLPL+M
Sbjct: 4   LGIDFGLKRVGLAISDRSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLSM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G +       R F  ++  R+  +P    DERLT+  A++ L   ++   KR   +DS 
Sbjct: 64  DGEDTLTTRQARNFAQSL-GRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMALDSQ 122

Query: 140 AAALILQEVLDR 151
           AA +IL+  L+ 
Sbjct: 123 AAVIILRTWLEN 134


>gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15]
          Length = 131

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GT+RIG+A+         P   +  +       ++ S +        ++GLPLNM
Sbjct: 1   MAFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + +E       R F   +  R  +VP    DERLT+  A+  ++    SR      VD  
Sbjct: 61  DDTENDMCARARKFGKRLHGR-YHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDR 119

Query: 140 AAALILQEVLDR 151
           AA LIL+    +
Sbjct: 120 AAVLILETFFQQ 131


>gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase
 gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 137

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLG  RIGLA++D   R A     +VR+   +    +        +   ++GLPL
Sbjct: 2   RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGP     R F   + +  + VP   +DERL++  A+  L    +S +++  +VD
Sbjct: 62  NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD 120

Query: 138 SIAAALILQEVLDRIS 153
           + AAA+ILQ  LDR +
Sbjct: 121 AEAAAVILQGWLDRRA 136


>gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
 gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
          Length = 152

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 3/142 (2%)

Query: 9   LVKSLKPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           L         I    D G + IG+A+       A+P   L   +      ++   I   N
Sbjct: 5   LDTPFPSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWN 64

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               I+GLPLNM+ SE     + R F   +  R   +   + DERL+TV A++ L  +  
Sbjct: 65  PDLLIVGLPLNMDQSEQFLTKAARRFGRRLHGR-YGLTIEWIDERLSTVEARERLN-IKS 122

Query: 128 SRKKRIQKVDSIAAALILQEVL 149
           S   R Q +D +AA  ILQ  L
Sbjct: 123 SASGRRQGIDQMAAQCILQTWL 144


>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
 gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
          Length = 136

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 3/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID GTK+IG+AISD     A P   +      +   ++   +    I   ++G+P+
Sbjct: 2   RILGIDYGTKKIGIAISDETNTIALPHGVI--DTDGEYLDKIKEIVKKNKITRIVVGMPI 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKKRIQKV 136
            + G +G R   T  F++ +  +   +  V WDERL+T  +++IL   NV  RK + + +
Sbjct: 60  TLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKVI 119

Query: 137 DSIAAALILQEVLDRI 152
           D IAA  ILQ  LD +
Sbjct: 120 DKIAATFILQGYLDSL 135


>gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A]
 gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A]
          Length = 136

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KRIG+A  D     A     + R+  T    +L   I T      ++GLP+ M
Sbjct: 1   MGLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + F  N I   + +P  + DER T++ A   L             VD  
Sbjct: 61  DGSLGSQAKQIQKFG-NRISTILNLPIEYIDERFTSLEAVSELKAQRKYSSYEKGLVDCY 119

Query: 140 AAALILQEVLDR 151
           AA +ILQ  LD+
Sbjct: 120 AAKIILQRWLDQ 131


>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104]
 gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 165

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 60/147 (40%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   ID+G+ RIG+A SDP    A P   + R +  +    L + +T       ++
Sbjct: 17  PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 76

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  +    G            +  R    P    DERLTTV+AQ+ L    V  K++ 
Sbjct: 77  GLPRTLADRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 136

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             +D  AA  ILQ  LD+        G
Sbjct: 137 AVIDQAAAVAILQSWLDQRRAAVREAG 163


>gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans
           LB400]
 gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
 gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase
 gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400]
 gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
          Length = 146

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   + A P   +  +        +   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFEAVGKLIAEWKPNALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        + F + + + +  +P  + DER ++V A+  +   N     R  
Sbjct: 67  LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWIDERYSSVEAKAEIRAGNG----RAD 121

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140


>gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
           18603]
 gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
           18603]
          Length = 151

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D GTKRIG+A++DP +  A     +  K + +    L  +     +  FI+G P 
Sbjct: 16  RIMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEY---LKKYFVLNPVERFIVGEPK 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            M+ +        + FV  +      +P    DER T+  A  ++    + +  R  K  
Sbjct: 73  QMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDRQNKAL 132

Query: 136 VDSIAAALILQEVLDRIS 153
           VD+I+A +ILQ  ++R +
Sbjct: 133 VDTISATIILQSWMERFN 150


>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
 gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
          Length = 183

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAF 71
              I ++D G KR+GLAISDPGR  A P   L R       T     L   +    +   
Sbjct: 1   MGTILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRL 60

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP++ +G + P+  + R +   +    + +  ++ DER +T  A +++ +  +S  K
Sbjct: 61  VMGLPVHTSGRDSPQARAARQWGDRVAKE-LGLTIIYVDERYSTKHADELMREAGLSAAK 119

Query: 132 RIQKVDSIAAALILQEVLD 150
           R ++VDS+AA +IL++ LD
Sbjct: 120 RKRRVDSLAAVVILRDYLD 138


>gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase
 gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5]
          Length = 137

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLG  RIGLA++D   R A P   +  +        + + +    +   ++GLPL
Sbjct: 2   RYLGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGTAVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GSEG      RAF   +  R   VP   +DERL+T  A+  L +   S ++   +VD
Sbjct: 62  NMDGSEGASARYARAFAEELA-RATGVPVELFDERLSTFEAESRLREQGFSARELRGRVD 120

Query: 138 SIAAALILQEVLD 150
           + AAA+ILQ  LD
Sbjct: 121 AEAAAVILQGWLD 133


>gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
           MED134]
 gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
           MED134]
          Length = 163

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
            +  +     I +ID GTKR G+A++D  +  A     +  K + +    L +++  E +
Sbjct: 21  FLHQILQMARIIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKF---LATYLAEEKV 77

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A +IG P  MN            F  ++  +   +  +  DER T+  A Q +ID  + 
Sbjct: 78  EAMVIGEPKRMNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIG 137

Query: 129 RKKRIQK--VDSIAAALILQEVL 149
           +KKR  K  VD I+A +ILQ+ L
Sbjct: 138 KKKRQNKALVDQISATIILQDYL 160


>gi|209694139|ref|YP_002262067.1| Holliday junction resolvase-like protein [Aliivibrio salmonicida
           LFI1238]
 gi|226725480|sp|B6EMV2|RUVX_ALISL RecName: Full=Putative Holliday junction resolvase
 gi|208008090|emb|CAQ78231.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 141

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      +  T    ++   I        ++GL
Sbjct: 3   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVGL 62

Query: 76  PLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G E        + F + +  R         DERL+TV A+  L +    +     
Sbjct: 63  PTDLHGKELDVITPKAKKFANRLHGR-FGNQVELHDERLSTVEARADLFEFGGYKALSKG 121

Query: 135 KVDSIAAALILQEVLDR 151
            VD  +A +IL+   + 
Sbjct: 122 NVDCQSAVVILESWFES 138


>gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
           21326]
 gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
           21326]
          Length = 140

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I S D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMSFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKLIKEWQPDLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   +P    DERL+T  A+  L +M   +     
Sbjct: 62  PTDLHGRDLETITPRAKKFANRLHGR-FGLPVELHDERLSTTEARAELFNMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 121 NVDCQSAVVILESWFE 136


>gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei
           MSHR346]
 gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
          Length = 146

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+A+ +   R A     +           + + I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+          F + + + +  +P  + DER ++V A+  L      
Sbjct: 61  DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
                 ++D+ AA +ILQ+ LD +     
Sbjct: 118 --DAADRIDAEAARVILQQYLDGLPDHHE 144


>gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           668]
 gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase
 gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668]
          Length = 146

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+A+ +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+          F + + + +  +P  + DER ++V A+  L      
Sbjct: 61  DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVNWVDERYSSVEARAGLRARG-- 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
                 +VD+ AA +ILQ+ LD +     
Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144


>gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K]
 gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase
 gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K]
          Length = 137

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLG  RIGLA++D   R A     +VR+   +    +        +   ++GLPL
Sbjct: 2   RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EGP     R F   + +  + VP   +DERL++  A+  L    +S +++  +VD
Sbjct: 62  NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD 120

Query: 138 SIAAALILQEVLDRIS 153
           + AAA+ILQ  LDR +
Sbjct: 121 AEAAAVILQGWLDRRA 136


>gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3]
          Length = 149

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D G    GLA  D  +  A P   +  +       ++ +      +   ++G P+
Sbjct: 2   KIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    R F  +M+   + +P V WDER TTV+A  ++ D+N   K+R + +D
Sbjct: 62  NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120

Query: 138 SIAAALILQEVLDRISFL 155
           ++AAA+ILQ  LD  + L
Sbjct: 121 AVAAAVILQNYLDYKANL 138


>gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
           glomerata]
 gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
           glomerata]
          Length = 164

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
             ID+GT RIG+A SDP  R A P   L R  ++     E+   +   +    ++GLP  
Sbjct: 9   VGIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTR 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G  GP     R +   +  R   VP    DERLTTV A + + +  +  + R   VD 
Sbjct: 69  LSGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQ 128

Query: 139 IAAALILQEVLD 150
            AA  ILQ  LD
Sbjct: 129 EAAVQILQSALD 140


>gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium
           varium ATCC 27725]
 gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium
           varium ATCC 27725]
          Length = 139

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   S+D+G  RIG+A SD     A P   + RKK T+    +    T EN  A ++G+P
Sbjct: 3   KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
            +++G+E  +    R F+  +      +  +  DERLTTVSA ++L + N     ++ + 
Sbjct: 62  KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAAA+ILQ  LD
Sbjct: 122 VDKIAAAIILQTFLD 136


>gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis TXDOH]
          Length = 146

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+AI +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F + + + +  +P  + DER ++V A+  L      
Sbjct: 61  DALVVGLPLHPDGAPHEMTQQAKRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
                 +VD+ AA +ILQ+ LD + 
Sbjct: 118 --DAANRVDAEAARVILQQFLDGLP 140


>gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           K96243]
 gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC
           23344]
 gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           1710b]
 gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei
           SAVP1]
 gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
           10229]
 gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
           10247]
 gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           1106a]
 gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           DM98]
 gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           14]
 gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           91]
 gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           9]
 gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           B7210]
 gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           7894]
 gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
           112]
 gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576]
 gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pakistan 9]
 gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1106b]
 gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
           10399]
 gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1655]
 gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           S13]
 gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1710a]
 gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           406e]
 gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase
 gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase
 gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase
 gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase
 gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase
 gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase
 gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase
 gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
           23344]
 gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1710b]
 gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei
           SAVP1]
 gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
           10229]
 gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1106a]
 gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
           10247]
 gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           406e]
 gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
           10399]
 gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           S13]
 gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1655]
 gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576]
 gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           Pakistan 9]
 gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1106b]
 gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
           1710a]
          Length = 146

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+A+ +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+          F + + + +  +P  + DER ++V A+  L      
Sbjct: 61  DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
                 +VD+ AA +ILQ+ LD +     
Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144


>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
 gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
          Length = 139

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   ++D+G  RIG+A SD    FAHP   + R K T+    +      EN  + ++G+P
Sbjct: 3   KKYLALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
            +++G E  +    R F+  +      +  +  DERL+T+SA+++L +  N   + + + 
Sbjct: 62  KSLDGQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKV 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAAA+ILQ  LD
Sbjct: 122 VDKIAAAIILQTYLD 136


>gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
 gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
 gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum
           V10Sc8a]
          Length = 149

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D G    GLA  D  +  A P   +  +       ++ +      +   ++G P+
Sbjct: 2   KIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNG+ GPR    R F  +M+   + +P V WDER TTV+A  ++ D+N   K+R + +D
Sbjct: 62  NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120

Query: 138 SIAAALILQEVLDRISFL 155
           ++AAA+ILQ  LD  + L
Sbjct: 121 AVAAAVILQNYLDYKANL 138


>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
           20162]
 gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
           20162]
          Length = 161

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
                ++D+G  RIG+A+SDP    A P   +   +       +   +T       +IGL
Sbjct: 9   RGRRLALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGL 68

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           P  + G  G        F   +               F DER TTV+AQ+ L D  V  K
Sbjct: 69  PRTLRGDRGESARMAEGFAARLATVLDATDQPSPRVCFSDERFTTVTAQRALRDNGVRAK 128

Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
           ++   +D  AA  ILQ  LD   
Sbjct: 129 EQRAVIDQAAAVAILQGWLDERR 151


>gi|297580605|ref|ZP_06942531.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535021|gb|EFH73856.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 140

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG AI       A P              E+   I        I+GL
Sbjct: 2   SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIAKQIKEWQPNLLIVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDR 151
            VD  +A +IL+   + 
Sbjct: 121 NVDCQSAVIILESWFES 137


>gi|269960441|ref|ZP_06174814.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3]
 gi|269834868|gb|EEZ88954.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3]
          Length = 141

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F + +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKALETITPRAKKFANRLQGR-YGLPVELHDERLSTAEARSELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D  +A +IL+   + +
Sbjct: 121 NIDCQSAVVILESWFESL 138


>gi|91228684|ref|ZP_01262598.1| Holliday junction resolvase-like protein [Vibrio alginolyticus
           12G01]
 gi|262393233|ref|YP_003285087.1| putative Holliday junction resolvase [Vibrio sp. Ex25]
 gi|91187755|gb|EAS74073.1| Holliday junction resolvase-like protein [Vibrio alginolyticus
           12G01]
 gi|262336827|gb|ACY50622.1| putative Holliday junction resolvase [Vibrio sp. Ex25]
          Length = 141

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        R F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLETITPRARKFAKRLQGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            VD  +A +IL+   + +
Sbjct: 121 NVDCQSAVVILESWFEAL 138


>gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
 gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
          Length = 188

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGLP 76
             +D+G+ R+G+A+SDP    A P   L R   ++      EL   +   +    ++GLP
Sbjct: 32  IGVDVGSVRVGVAVSDPDGLLAVPVTTLRRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +++G EG  V   R +   +  R   VP    DERLTTV A + + +  +  + R   V
Sbjct: 92  RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151

Query: 137 DSIAAALILQEVLD 150
           D  AA  ILQ  LD
Sbjct: 152 DQEAAVQILQHHLD 165


>gi|229519852|ref|ZP_04409286.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80]
 gi|229343140|gb|EEO08124.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80]
          Length = 140

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG AI       A P              E+   I        I+GL
Sbjct: 2   SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDR 151
            VD  +A +IL+   + 
Sbjct: 121 NVDCQSAVIILESWFES 137


>gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132]
 gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           ND132]
          Length = 138

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID G KR+GLA+SD       P   L R        EL   I  E I A ++GLPL +
Sbjct: 4   LGIDFGLKRVGLAVSDRTGTLVSPLKTLERTTRQALFDELTEIIHDEAIEAVVVGLPLAL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G +       R F  ++  R++  P    DERLT+  A++ L    +   KR   +DS 
Sbjct: 64  SGEDTLTTRQARNFAESL-GRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAALDSQ 122

Query: 140 AAALILQEVLDR 151
           AA +IL+  LD 
Sbjct: 123 AAVVILRSWLDS 134


>gi|15640493|ref|NP_230120.1| Holliday junction resolvase-like protein [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121590718|ref|ZP_01678050.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728570|ref|ZP_01681591.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674125|ref|YP_001215992.1| Holliday junction resolvase-like protein [Vibrio cholerae O395]
 gi|153216267|ref|ZP_01950360.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153802592|ref|ZP_01957178.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153819170|ref|ZP_01971837.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823173|ref|ZP_01975840.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153826577|ref|ZP_01979244.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828418|ref|ZP_01981085.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|227080676|ref|YP_002809227.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2]
 gi|229507104|ref|ZP_04396610.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286]
 gi|229509060|ref|ZP_04398548.1| hypothetical protein VCE_000463 [Vibrio cholerae B33]
 gi|229512528|ref|ZP_04401999.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21]
 gi|229519728|ref|ZP_04409171.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9]
 gi|229525157|ref|ZP_04414562.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis
           VL426]
 gi|229530308|ref|ZP_04419696.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)]
 gi|229606241|ref|YP_002876889.1| Holliday junction resolvase-like protein [Vibrio cholerae MJ-1236]
 gi|254291177|ref|ZP_04961973.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254850697|ref|ZP_05240047.1| holliday junction resolvase-like protein [Vibrio cholerae MO10]
 gi|255744287|ref|ZP_05418240.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101]
 gi|261210043|ref|ZP_05924341.1| putative Holliday junction resolvase [Vibrio sp. RC341]
 gi|262147288|ref|ZP_06028087.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1]
 gi|262164082|ref|ZP_06031821.1| putative Holliday junction resolvase [Vibrio mimicus VM223]
 gi|262167140|ref|ZP_06034854.1| putative Holliday junction resolvase [Vibrio cholerae RC27]
 gi|262172420|ref|ZP_06040098.1| putative Holliday junction resolvase [Vibrio mimicus MB-451]
 gi|262191077|ref|ZP_06049284.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93]
 gi|298501003|ref|ZP_07010804.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|32130070|sp|Q9KUP9|RUVX_VIBCH RecName: Full=Putative Holliday junction resolvase
 gi|172047745|sp|A5F9G8|RUVX_VIBC3 RecName: Full=Putative Holliday junction resolvase
 gi|254767532|sp|C3LRY3|RUVX_VIBCM RecName: Full=Putative Holliday junction resolvase
 gi|9654892|gb|AAF93639.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547449|gb|EAX57558.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629126|gb|EAX61569.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114356|gb|EAY33176.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124121855|gb|EAY40598.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|126510315|gb|EAZ72909.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519299|gb|EAZ76522.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316008|gb|ABQ20547.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148876127|gb|EDL74262.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149739669|gb|EDM53883.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150422871|gb|EDN14822.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008564|gb|ACP04776.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2]
 gi|227012319|gb|ACP08529.1| Putative Holliday junction resolvase [Vibrio cholerae O395]
 gi|229332081|gb|EEN97569.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)]
 gi|229338738|gb|EEO03755.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis
           VL426]
 gi|229344417|gb|EEO09392.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9]
 gi|229350421|gb|EEO15370.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21]
 gi|229353985|gb|EEO18919.1| hypothetical protein VCE_000463 [Vibrio cholerae B33]
 gi|229355849|gb|EEO20769.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286]
 gi|229368896|gb|ACQ59319.1| hypothetical protein VCD_001140 [Vibrio cholerae MJ-1236]
 gi|254846402|gb|EET24816.1| holliday junction resolvase-like protein [Vibrio cholerae MO10]
 gi|255738227|gb|EET93619.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101]
 gi|260840808|gb|EEX67350.1| putative Holliday junction resolvase [Vibrio sp. RC341]
 gi|261893496|gb|EEY39482.1| putative Holliday junction resolvase [Vibrio mimicus MB-451]
 gi|262024440|gb|EEY43127.1| putative Holliday junction resolvase [Vibrio cholerae RC27]
 gi|262027610|gb|EEY46276.1| putative Holliday junction resolvase [Vibrio mimicus VM223]
 gi|262031282|gb|EEY49897.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1]
 gi|262033053|gb|EEY51584.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93]
 gi|297540251|gb|EFH76311.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327483319|gb|AEA77726.1| Putative Holliday junction resolvase [Vibrio cholerae LMA3894-4]
          Length = 140

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + + D GTK IG AI       A P              E+   I        I+GL
Sbjct: 2   SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDR 151
            VD  +A +IL+   + 
Sbjct: 121 NVDCQSAVIILESWFES 137


>gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
           6940]
 gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
           6940]
          Length = 180

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
             N    ++D+GT RIG+A+SD     A P   + R+   +         +L  I   ++
Sbjct: 13  PGNGRRLALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHV 72

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV------YVPFVFWDERLTTVSAQQIL 122
              ++GLP ++ G+    V   +     +  R          P    DERLTTV+A   L
Sbjct: 73  VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTAL 132

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
               VS KK  + +D  AA  ILQ  LD R + L+S  
Sbjct: 133 RASGVSEKKGRKVIDQAAAVEILQSWLDARHNALQSDA 170


>gi|308094702|ref|ZP_05891280.2| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308095554|ref|ZP_05906770.2| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308126024|ref|ZP_05778717.2| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308126682|ref|ZP_05911773.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308085842|gb|EFO35537.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308090447|gb|EFO40142.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308107473|gb|EFO45013.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308113524|gb|EFO51064.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 145

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 6   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 65

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 66  PTDLHGKDLETITPRAKKFAKRLQGR-YGLPVELHDERLSTSEARAELFSMGGYKALSKG 124

Query: 135 KVDSIAAALILQEVLDRI 152
            +D  +A +IL+   + +
Sbjct: 125 NIDCQSAVVILESWFEAL 142


>gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
 gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
          Length = 142

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G KR G+A+SD G   A PR  ++ +       ELL+ I  E   A +IGLP+N+
Sbjct: 4   LAIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLPINL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G E       R F  ++  R+  +P  + +E L++  A++ L D   S  +    +D  
Sbjct: 64  DGEESLTTRQVRNFSKSLA-RRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVLDQQ 122

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LD+
Sbjct: 123 AAVRILQSFLDQ 134


>gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 140

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              E+   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDEIEKQIKEWQPHLIVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P++++G          + F + +  R   V     DERL+T  A+  L  M   +     
Sbjct: 62  PMDLHGKALESITQRAKKFANRLHGR-FGVDVELHDERLSTTEARSELFAMGGYKALTKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 121 NVDCQSAVVILESWFE 136


>gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
 gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
          Length = 143

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAA 70
           SL   +    +D+G+ RIG+A+ DP    A P   + R          + + +   + A 
Sbjct: 2   SLTRGRR-LGVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAE 60

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+GLP  +    G    + R F   +  R   V   + DERLTTV+A Q +     + K
Sbjct: 61  VIVGLPKTLRNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAK 120

Query: 131 KRIQKVDSIAAALILQEVLD 150
                +D  AA  ILQ  LD
Sbjct: 121 SSRAVIDQAAAVAILQGWLD 140


>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
 gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
 gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
          Length = 169

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
                   ID+G  R+G+A SDP    A P   + R+K   +    L   +T       +
Sbjct: 17  PGRGRRIGIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP  +    GP  H        +  R   VP    DERLTTVSAQ+ L +  V  K +
Sbjct: 77  VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
              +D +AA  ILQ  LD+     ++ G
Sbjct: 137 RAMIDQVAAVGILQSWLDQRRAALAAPG 164


>gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           longum JDM301]
 gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 156

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP   FAHP   +           E+L+ I  E++   I+GLPL 
Sbjct: 8   LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126
           M+G+EG      R +  N+  R           +  +P     DERLTTVSA + L + +
Sbjct: 68  MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 127

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
            +  K    VD  +A +ILQ  LDR  
Sbjct: 128 KASNKHRPVVDQQSAVVILQTALDRTR 154


>gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 139

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   S+D+G  RIG+A SD     A P   + RKK T+    +      EN  A ++G+P
Sbjct: 3   KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
            +++G+E  +    R F+  +      +  +  DERLTTVSA ++L + N     ++ + 
Sbjct: 62  KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121

Query: 136 VDSIAAALILQEVLD 150
           VD IAAA+ILQ  LD
Sbjct: 122 VDKIAAAIILQTFLD 136


>gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688]
 gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688]
          Length = 172

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L       + D G KRIG+A+ +     AHP   +  +        + + I        I
Sbjct: 21  LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLI 80

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPL+++G E       R F   + D +  +P V  DERL++  A   L +  V  +K+
Sbjct: 81  VGLPLSLDGEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
              +D +AA  ILQ   D +S L
Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162


>gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4]
 gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4]
          Length = 172

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L       + D G KRIG+A+ +     AHP   +  +        + + I        I
Sbjct: 21  LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLI 80

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPL+++G E       R F   + D +  +P V  DERL++  A   L +  V  +K+
Sbjct: 81  VGLPLSLDGEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
              +D +AA  ILQ   D +S L
Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162


>gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii
           23-P]
 gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii
           23-P]
          Length = 151

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M  L    L K L     I +ID G KR G+A++D  +  A     +   ++      L 
Sbjct: 1   MPCLKNVFLQKQLY-MARILAIDFGKKRTGIAVTDELQIIASGLTTVNTDELLPF---LK 56

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
            + + E +   +IG P  M+ S+         F+  +      +P    DER T+  A Q
Sbjct: 57  EYSSKEKVGLILIGHPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQ 116

Query: 121 ILIDMNVSRKKRIQK--VDSIAAALILQEVL 149
            +ID  + +K+R  K  VD I+A +ILQ  L
Sbjct: 117 TMIDGGMKKKQRRNKAMVDEISATIILQSYL 147


>gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
 gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
          Length = 139

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP R  A+    +    +      L  +I  E +   +IG 
Sbjct: 1   MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIAEEPVDRLVIGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  +G     +     FV+        +P  ++DER T+V A Q LI   V +K R   
Sbjct: 58  PVQPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRREN 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134


>gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium
           pseudotuberculosis I19]
          Length = 197

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
             N     ID+GT RIG+A SD   R A P   + RK     +       LL  I    +
Sbjct: 13  PGNGRRLGIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAV 72

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILID 124
              ++GLP ++ G+    V   +         +   +  +P    DERLTTV A Q L  
Sbjct: 73  VEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRA 132

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
             +S K   + +D  AA  ILQ  LD
Sbjct: 133 SGISEKTGRKVIDQAAAVEILQSWLD 158


>gi|28899387|ref|NP_798992.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839187|ref|ZP_01991854.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|32130015|sp|Q87LJ9|RUVX_VIBPA RecName: Full=Putative Holliday junction resolvase
 gi|28807623|dbj|BAC60876.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747289|gb|EDM58273.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|328474083|gb|EGF44888.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus
           10329]
          Length = 141

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKDLETITPRAKKFAKRLQGR-YGLPVELHDERLSTSEARAELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLDRI 152
            +D  +A +IL+   + +
Sbjct: 121 NIDCQSAVVILESWFEAL 138


>gi|37681055|ref|NP_935664.1| Holliday junction resolvase-like protein [Vibrio vulnificus YJ016]
 gi|62901000|sp|Q7MHJ8|RUVX_VIBVY RecName: Full=Putative Holliday junction resolvase
 gi|37199805|dbj|BAC95635.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus
           YJ016]
          Length = 140

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              E+   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F   +  R   +P    DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGKALETITPRAKKFAQRLQGR-FALPVELHDERLSTTEARSELFSMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 121 NVDCQSAVIILESWFE 136


>gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum
           DJO10A]
 gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
           12_1_47BFAA]
 gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase
 gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase
 gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum
           DJO10A]
 gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 152

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP   FAHP   +           E+L+ I  E++   I+GLPL 
Sbjct: 4   LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126
           M+G+EG      R +  N+  R           +  +P     DERLTTVSA + L + +
Sbjct: 64  MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
            +  K    VD  +A +ILQ  LDR  
Sbjct: 124 KASNKHRPVVDQQSAVVILQTALDRTR 150


>gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase
 gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 151

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP   FAHP   +           E+L+ I  E++   I+GLPL 
Sbjct: 4   LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126
           M+G+EG      R +  N+  R           +  +P     DERLTTVSA + L + +
Sbjct: 64  MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
            +  K    VD  +A +ILQ  LDR  
Sbjct: 124 KASNKHRPVVDQQSAVVILQTALDRTR 150


>gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans
           PsJN]
 gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase
 gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN]
          Length = 146

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A P   +  +        +   I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNSLTRRARPLVIVQNRSREYRFEAVGKLIAEWKPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP + +G+        + F + + + +  +P  + DER ++V A+  +   N     R  
Sbjct: 67  LPFHPDGAPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAKAEIRAGNG----RAD 121

Query: 135 KVDSIAAALILQEVLDRIS 153
            +D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140


>gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
 gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
          Length = 153

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFII 73
             +D+G  R+G+A SDP    A P   L R +      V     EL + +        ++
Sbjct: 10  LGVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEAVEVVV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+N+ G  GP     + +V  +++    VP    DER++TV A + L +  V  +++ 
Sbjct: 70  GLPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQR 129

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146


>gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
 gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
          Length = 200

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
             +D+G+ R+G+A SDP    A P   L R    +  +   EL   +   +    ++GLP
Sbjct: 44  IGVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVVGLP 103

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
             ++G EG  V   R +   +  R   VP    DERLTTV A + + +  +  + R + V
Sbjct: 104 RQLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRELV 163

Query: 137 DSIAAALILQEVLD 150
           D  AA  ILQ  LD
Sbjct: 164 DQEAAVQILQHHLD 177


>gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
 gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
          Length = 153

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFII 73
             +D+G  R+G+A SDP    A P   L R +      V     EL + +T       ++
Sbjct: 10  LGVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEAVEVVV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+N+ G +GP     +A+V  +++    VP    DER++TV A + L +  V  +++ 
Sbjct: 70  GLPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQR 129

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146


>gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase
 gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 137

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D GTK IG+A+       A   P +  K       +L   I      A ++G PLN
Sbjct: 3   IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G++      +  F   +      +P +  DERL+TV A+ IL +    +  + +++DS
Sbjct: 63  IDGTKQKITQCSENFSKKL-KNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERIDS 121

Query: 139 IAAALILQEVL 149
           ++A +IL+   
Sbjct: 122 MSAVIILESWF 132


>gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
           20093]
 gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
           20093]
          Length = 156

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 13/145 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  RIG A+SDP   FAHP   + VR        E+L+ I  E +   ++GLPL 
Sbjct: 4   LGLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126
           ++G+EG      R +V  +I R V            +P     DERLTTV A + L D  
Sbjct: 64  LDGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDAQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
           V  +     VD  +A  ILQ  LD+
Sbjct: 124 VQGRNHRAMVDQQSAVEILQSALDQ 148


>gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 150

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 5/141 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
                 I +ID G KR GLA++DP +        +    +      L  +++ E +  F+
Sbjct: 10  CTDMGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDF---LRDYVSREPVERFV 66

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP  MN  E   +   R F   +      +P  + DER T+  AQ+ +++  + + KR
Sbjct: 67  LGLPRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKR 126

Query: 133 IQK--VDSIAAALILQEVLDR 151
             K  VD ++A +ILQ  LD 
Sbjct: 127 RDKALVDEVSAVIILQSYLDN 147


>gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
 gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
          Length = 138

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR G+A++DP +  A+    +    +      L  ++  E +   +IG P+
Sbjct: 2   RILSIDYGKKRTGIAVTDPLQIIANGLATVSTSTL---FDYLKDYVAREEVERIVIGKPM 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +     FV+        +P  ++DER T+V A + ++   + +K R  K  
Sbjct: 59  QTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKAL 118

Query: 136 VDSIAAALILQEVLDRIS 153
           VD I+A +ILQ  ++   
Sbjct: 119 VDEISATIILQSYMESKR 136


>gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
 gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
          Length = 148

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G +RIG+A  D     A     +VR        +  + I    +   ++GLP   
Sbjct: 13  LGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLS 72

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG  G +    + +   +  + + +P  + DERLT+V A+Q+L    +   +    +D  
Sbjct: 73  NGELGTQARQIQKYTRRL-QKSLALPVEYVDERLTSVEAEQMLKGQKIPLSENKALIDRK 131

Query: 140 AAALILQEVLDRIS 153
           AAALILQ+ LD+  
Sbjct: 132 AAALILQQWLDQRR 145


>gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
           18C-A]
 gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
           18C-A]
          Length = 139

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP R  A+    +    +      L  +I TE +   +IG 
Sbjct: 1   MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIETETVERLVIGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  +G     +     FV+        +P  ++DER T+V A Q +I   V +K R   
Sbjct: 58  PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134


>gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
 gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
          Length = 135

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +  A     +    + +    L  ++  EN+  F+IG 
Sbjct: 1   MARILAIDYGKKRTGIAVTDEMQLIASGLTTVRTHDLIKF---LKEYVAKENVELFLIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN          + F+  +      +P    DER T+  A Q +ID  + +K+R  K
Sbjct: 58  PKQMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNK 117

Query: 136 --VDSIAAALILQEVL 149
             +D I+A +ILQ  L
Sbjct: 118 SLIDEISATIILQSYL 133


>gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis E264]
 gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis Bt4]
 gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis E264]
 gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase
 gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia
           thailandensis E264]
          Length = 146

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+AI +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+          F + + + +  +P  + DER ++V A+  L      
Sbjct: 61  DALVVGLPLHPDGAPHEMTQRALRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117

Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
                 +VD+ AA +ILQ+ LD + 
Sbjct: 118 --DAANRVDAEAARVILQQFLDGLP 140


>gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126]
 gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126]
          Length = 137

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID GTKR+GLA++DP +  A P   +  K + Q    L ++ ++E + A + G P 
Sbjct: 3   RVLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQY---LANYFSSEEVEAVVCGYPT 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
           N  G          AF++    +   +P    DE  ++  A Q +I    +RK+R +K  
Sbjct: 60  NEEGEATDATRHVDAFINLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKKSG 119

Query: 136 -VDSIAAALILQEVLDR 151
            +D I+AA+ILQ+ L+ 
Sbjct: 120 NIDKISAAIILQQFLEE 136


>gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 139

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   ++D+G  RIG+A SD     A P   + R+KV +    +   +  EN  + +IG+P
Sbjct: 3   KKYVALDVGDVRIGVAKSDIMGILATPLEVIDRRKV-KAVKRIEEILIQENTKSLVIGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
            +++G+E  +    R F+  +      +     DERLTTVSA ++L + N     ++ + 
Sbjct: 62  KSLDGTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETNKKGALEKRKV 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD +AAA+ILQ  LDR  
Sbjct: 122 VDKVAAAIILQTFLDRKK 139


>gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
           86-1044]
 gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
           86-1044]
          Length = 148

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITT------ENIAA 70
            I  ID G KRIGLAISD     A         KK+ +T   L+  +          +  
Sbjct: 4   RIIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYELKE 63

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G PL MNG  G        F   +    + +P + WDERLT+V A++ +++ + +RK
Sbjct: 64  IVVGFPLKMNGKAGFISDEVTLFAETLSKA-LSIPIIKWDERLTSVQAERAMMEGSYNRK 122

Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155
           KR +K+D I+A +ILQ  LD  + +
Sbjct: 123 KRTKKLDQISAVIILQNYLDSKNLI 147


>gi|197335536|ref|YP_002155189.1| hypothetical protein VFMJ11_0433 [Vibrio fischeri MJ11]
 gi|226695315|sp|B5F9S6|RUVX_VIBFM RecName: Full=Putative Holliday junction resolvase
 gi|197317026|gb|ACH66473.1| conserved hypothetical protein [Vibrio fischeri MJ11]
          Length = 141

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      +  T    ++   I   N    ++GL
Sbjct: 3   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGL 62

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G E        + F + +  R         DERL+T  A+  L +    +     
Sbjct: 63  PTDLHGKELDTITPRAKKFANRLHGR-FGKQVELHDERLSTAEARADLFEFGGYKALSKG 121

Query: 135 KVDSIAAALILQEVLDR 151
            +D  +A +IL+   + 
Sbjct: 122 NIDCQSAVVILESWFEN 138


>gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
 gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase
 gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
          Length = 143

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
             N+ + + D GT+RIG+A          P   L  +       ++ + +        ++
Sbjct: 4   PGNRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPLNM+ +E       R F   +  R  +V     DERLT+  A+  ++    SR    
Sbjct: 64  GLPLNMDDTENEMCARARKFGKRLHGR-YHVTVEMVDERLTSYEAKGEVMAGGGSRDFGR 122

Query: 134 QKVDSIAAALILQEV 148
             VD  AA LIL+  
Sbjct: 123 HGVDDRAAVLILETW 137


>gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase
 gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC
           25259]
          Length = 145

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + DLG KR G+A  +     AHP   +  +        +         A F++GL
Sbjct: 7   HGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLGL 66

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +GSE       R F   + + +   P    DERLT+ +A+  L    +  KK    
Sbjct: 67  PTRADGSENEMTRVARNFARRL-ESRFERPVFLIDERLTSATAESELHARGIHGKKNKAL 125

Query: 136 VDSIAAALILQEVLD 150
            D++AA LILQ   D
Sbjct: 126 TDAVAAQLILQGFFD 140


>gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila
           DSM 44928]
 gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM
           44928]
          Length = 171

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+GT RIG+A  D     A P   +  +    +   L +          ++GLP ++
Sbjct: 21  LGVDVGTVRIGVASCDRDGLLATPVETVKAEPRRASLDRLAALAAEYEAFEIVVGLPRSL 80

Query: 80  NGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G EGP     RA+  +++ R     P    DERL+TV+A Q L    V  KK    VD 
Sbjct: 81  SGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGRSVVDQ 140

Query: 139 IAAALILQEVLDRISFLESSKG 160
            AA +ILQ  LD         G
Sbjct: 141 AAAVVILQNALDAERMSGRPPG 162


>gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase
 gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 170

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G +RIG+A SD     A     + R+ +++   ++  +I        ++G+PL  
Sbjct: 17  LGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLA 76

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + FV  +    V +P V  +E L+T  A+  L +  +  K +   +D  
Sbjct: 77  DGSVGSQARKVQRFVRAL-QVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQ 135

Query: 140 AAALILQEVLDRISF 154
           +AA+ILQ  LD    
Sbjct: 136 SAAVILQTWLDERRA 150


>gi|59711040|ref|YP_203816.1| Holliday junction resolvase-like protein [Vibrio fischeri ES114]
 gi|62900895|sp|Q5E7R8|RUVX_VIBF1 RecName: Full=Putative Holliday junction resolvase
 gi|59479141|gb|AAW84928.1| predicted Holliday junction resolvase [Vibrio fischeri ES114]
          Length = 141

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      +  T    ++   I   N    ++GL
Sbjct: 3   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGL 62

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G E        + F + +  R         DERL+T  A+  L +    +     
Sbjct: 63  PTDLHGKELDTITPRAKKFANRLHGR-FGKQVELHDERLSTAEARADLFEFGGYKALSKG 121

Query: 135 KVDSIAAALILQEVLDR 151
            +D  +A +IL+   + 
Sbjct: 122 NIDCQSAVVILESWFEN 138


>gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase
 gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 152

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I + D GTKRIG+A +DP +  A+    +  K V    + L  ++ TE + AF++GL
Sbjct: 1   MARILAFDFGTKRIGIASTDPMQIIANALDTVHPKDV---VVYLKKYLNTEPVEAFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  +   E     + +AF++ +       P    DER T+  A   ++   VS+K R  K
Sbjct: 58  PRTLQNEESSNAANVKAFINLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKGRRDK 117

Query: 136 --VDSIAAALILQEVLDR 151
             +D I+A +ILQ  +++
Sbjct: 118 ATIDKISATIILQSFMEQ 135


>gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 145

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D+G KRIG+A+SDP    A P  F++     +   ++   I    I+  +IGL
Sbjct: 1   MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           PL + G EG +   T+ F  N+ +     +  +F DER T+  A++ L      +K + +
Sbjct: 59  PLTLKGEEGEQARYTKDFAENLKNHIPQDIEIIFIDERFTSSLAEKTL--SQTKKKNKKE 116

Query: 135 KVDSIAAALILQEVLDRIS 153
           K+DS++A  ILQ  LDR+S
Sbjct: 117 KIDSLSAVFILQTYLDRLS 135


>gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05]
 gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1]
 gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05]
 gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1]
          Length = 152

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             IDLG  R+GLA+SDPG  FAHP   + V         E+L  I   N+   +IGLPL 
Sbjct: 4   LGIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
           ++G+EG        +  N+I R   +              V+ DERLTTVSA + L+  +
Sbjct: 64  LDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQAD 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           +S KK    VD  +A LILQ  LD
Sbjct: 124 LSTKKHRPMVDQQSAVLILQSALD 147


>gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides
           distasonis ATCC 8503]
 gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase
 gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503]
          Length = 140

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A +D  +  A+    +   +V +    L  +I+ E +  F++GL
Sbjct: 1   MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
              MN      +    AFV ++      +P  ++DER T+V A + +++  + +KKR   
Sbjct: 58  RKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117

Query: 134 QKVDSIAAALILQEVLDRISF 154
             VD I+A +ILQ  L+   +
Sbjct: 118 GLVDEISAVIILQAYLESKKY 138


>gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
           3645]
 gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
           3645]
          Length = 159

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +     IA ID GT RIG+AI+DP R  A P     R+ +             E I  F+
Sbjct: 9   IPTVGRIAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKLERIVLFV 68

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP++M+G+E  +    R F    + R   VP V++DER TT  A+  L  + ++++K+
Sbjct: 69  VGLPVHMSGNESGKSGEARKFGQ-WLGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKK 127

Query: 133 IQKVDSIAAALILQEVLDR 151
              +D +AA ++L   L+ 
Sbjct: 128 KAVIDKLAAQILLTAYLEN 146


>gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
 gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
          Length = 136

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D G  R G+A++D  +  A     +   ++      L +++  E +   ++G 
Sbjct: 1   MGRILALDFGKVRTGIAVTDELQIIASGLKTVATNELLPF---LKNYLKQEKVELILLGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  M+ S+       + F+  +      +P    DER T+  A Q +ID  + +K+R  K
Sbjct: 58  PKQMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNK 117

Query: 136 --VDSIAAALILQEVL 149
             VD I+A +ILQ  L
Sbjct: 118 ALVDEISATIILQSYL 133


>gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
           ES-2]
 gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
           ES-2]
          Length = 170

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             + + D GT+RIG+A+ +     A P   +  +K       +   +      A ++GLP
Sbjct: 17  GTLLAFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLP 76

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +GS        + F   +  R   +  +  DER ++++A + L    V  + +   +
Sbjct: 77  CSDDGSPHELTALCQRFAKRLHGR-YGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALI 135

Query: 137 DSIAAALILQEVLDR 151
           D  AA  ILQ   D 
Sbjct: 136 DQYAAQQILQAYFDE 150


>gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 164

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENI 68
             N     +D+GT RIG+A+SD   R A P   + R              L+  I     
Sbjct: 13  PGNGRRIGLDVGTVRIGVAVSDRDARLAMPVETVDRVTNFGDDDGADVDRLVELIGFYGA 72

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP ++ G+    V         +  R   VP    DERLTTV+A   L    VS
Sbjct: 73  VEVVVGLPRDLKGNGSKSVKHAEDIAARLRAR-CGVPVRMGDERLTTVAATHALRASGVS 131

Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            K   + +D  AA  ILQ  LD R++ L+ +
Sbjct: 132 AKAGRKVIDQAAAVEILQSWLDGRLTTLKET 162


>gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes
           FSL J2-003]
          Length = 114

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
             +D+G+K +G+AISDP    A     +   +  +      +   +    +   ++GLP 
Sbjct: 1   MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           NMN + GPR  S++ +   + + ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 61  NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114


>gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
           51259]
 gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
           51259]
          Length = 138

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +   +    +   ++      L ++ T E++  F+IGL
Sbjct: 1   MSRILAIDYGKKRTGIAVTDILQIIPNGLTTVATHELLNF---LKAYTTKEDVERFVIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   NG          AF   +      +P  F+DER T+  A Q ++   + +K+R +K
Sbjct: 58  PRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQEK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  ++   
Sbjct: 118 ALVDEISACIILQSYMESKK 137


>gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
 gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
          Length = 140

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR GLA++DP +        +   ++ +    L +++  E +   +IG P 
Sbjct: 5   RILSIDYGKKRTGLAVTDPLQMICGGLATVPTSELFKF---LQTYMEKEPVERIVIGEPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +   + FV+       +VP  F+DER T++ A + ++D  + +K R  K  
Sbjct: 62  QPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRDKAL 121

Query: 136 VDSIAAALILQEVLDRIS 153
           VD I+A +ILQ  L+ I 
Sbjct: 122 VDEISATIILQSYLESIR 139


>gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM
           17132]
 gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM
           17132]
          Length = 140

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G  R GLA++DP +  A     +   K  Q    L  +I  E + A ++GL
Sbjct: 1   MGRILAIDYGKVRTGLAVTDPLQIIATALETV---KTDQLINYLERYIQNEEVDALVLGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PL++   + P     R+F   + D+   +P  F DER T+  A   LI   V +K R   
Sbjct: 58  PLSLRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVK 117

Query: 134 QKVDSIAAALILQEVL 149
              D I+A +ILQ  L
Sbjct: 118 GNTDLISAVIILQSYL 133


>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
 gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
          Length = 137

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    +D+G  RIG+A SD     A P   + R         +   +  EN    ++G+
Sbjct: 1   MKKYLGLDVGDVRIGVAKSDILGILATPLEVINRNDTDP-VKRIKELLQQENTNGLVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P +++G+   +V     F+  +      +  +  DER TTV A+  L +    + ++R +
Sbjct: 60  PKSLDGTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYLRNYSKKNPRERRK 119

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA++ILQ+ LD
Sbjct: 120 VVDMVAASIILQKFLD 135


>gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
 gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
          Length = 137

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +IDLGTKR GLA++DP +  A+P   +   K+      + ++I  E +   ++GLP 
Sbjct: 3   RVLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDF---IKAYIAKEEVDTLVLGLPT 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            +NG +        A    +            DER T+  A Q +I M   +K R +K  
Sbjct: 60  KLNGKDNEMTPKVMAMKTKLEKNFPSQKVELVDERFTSKMAMQSMITMGSKKKDRREKAG 119

Query: 136 -VDSIAAALILQEVLDR 151
            +D ++AA+ILQ  L+R
Sbjct: 120 NLDKVSAAIILQSYLER 136


>gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
           20213]
 gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
           20213]
          Length = 150

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 11/143 (7%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP   FAHP   +           E+L+ +  E++   I+GLPL 
Sbjct: 4   LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDR---------KVYVP-FVFWDERLTTVSAQQILIDMNVS 128
           M+G+EG      R +  N+  R         +  +P  V  DERLTTVSA + L +   +
Sbjct: 64  MDGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKA 123

Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
             K    VD  +A +ILQ  LDR
Sbjct: 124 STKHRPMVDQQSAVVILQTALDR 146


>gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway
           5J108-111]
 gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii
           CbuG_Q212]
 gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase
 gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase
 gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
 gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
          Length = 141

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 15  PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           PNQ +     D G KRIG+A+       A+    L  +       ++   I T +    +
Sbjct: 2   PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P NM+GSE     + R F   +  R   +P    DERLTT+ A++   +  ++  KR
Sbjct: 62  VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118

Query: 133 IQKVDSIAAALILQEVL 149
            Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135


>gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha
           C91]
 gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase
 gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91]
          Length = 157

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
            I D+   +  +  + + D G +RIG+AI +   R AHP   + +        ++   I 
Sbjct: 8   TISDMASVIL-SGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIE 66

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
           T      ++GL ++ +G+E       + F   + + +  +P V  DER TT  A+  L +
Sbjct: 67  TWQPVLLVVGLSVHADGAEHEITRLCQRFARRL-EGRFGIPVVMEDERYTTAIARLTLEE 125

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151
           + ++ +K+   +D IAA  ILQ   D 
Sbjct: 126 VGITGRKQRPMLDQIAAQHILQTFFDS 152


>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
 gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 138

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++   +       +    ++G+
Sbjct: 1   MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLVVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL ++N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA++ILQ  LD
Sbjct: 120 VVDKVAASIILQTYLD 135


>gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase
 gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium
           glutamicum ATCC 13032]
          Length = 182

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
           P +    +D+GT RIG+A SD   + A P   + R+   +         L++ +   N  
Sbjct: 15  PGRR-LGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAV 73

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I+GLP ++ G+    V   +         + +    +P    DERLTTV A Q L   
Sbjct: 74  EVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRAS 133

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            VS K   + +D  AA  ILQ  LD R   LE  
Sbjct: 134 GVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQ 167


>gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium
           glutamicum R]
 gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 182

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
           P +    +D+GT RIG+A SD   + A P   + R+   +         L++ +   N  
Sbjct: 15  PGRR-LGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAV 73

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I+GLP ++ G+    V   +         + +    +P    DERLTTV A Q L   
Sbjct: 74  EVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRAS 133

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            VS K   + +D  AA  ILQ  LD R   LE  
Sbjct: 134 GVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQ 167


>gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803]
 gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase
 gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803]
          Length = 135

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D GTKR G+A++D  +  A     +   ++ +    L  +   E +   ++G 
Sbjct: 1   MARILALDYGTKRTGVAVTDELKMIASGLTTVQTPELIKF---LEDYFKNEKVERVLVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  M+ +        + F+   + +   +P    DER T+  A Q +ID  + +KKR  K
Sbjct: 58  PKRMDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDK 117

Query: 136 --VDSIAAALILQEVL 149
             VD I+A +ILQ  L
Sbjct: 118 ALVDEISATIILQTWL 133


>gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella
           denticola F0289]
 gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289]
          Length = 139

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP R  A+    +    +      L  +I TE +   +IG 
Sbjct: 1   MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIGTETVEQLVIGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  +G     +     FV+        +P  ++DER T+V A Q +I   V +K R   
Sbjct: 58  PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134


>gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 148

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP R        +     ++    L  +I  E +   ++G 
Sbjct: 1   MGRILAIDYGKKRTGLAVTDPLRITPGGLATVA---SSELLQYLSEYIPREGVDLVVVGY 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  E   +     FV  +  R   +  V++DER T+  AQ+ +++  + ++KR  K
Sbjct: 58  PRQMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNK 117

Query: 136 --VDSIAAALILQEVLDRISF 154
             VD ++A +ILQ  ++ +++
Sbjct: 118 ALVDEVSAIIILQSYMESLAY 138


>gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
           W83]
 gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase
 gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis
           W83]
          Length = 138

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP +        +    +      L  +++ E +  F++GL
Sbjct: 1   MGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDF---LRDYVSREPVERFVLGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN  E   +   R F   +      +P  + DER T+  AQ+ +++  + + KR  K
Sbjct: 58  PRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDK 117

Query: 136 --VDSIAAALILQEVLDR 151
             VD ++A +ILQ  LD 
Sbjct: 118 ALVDEVSAVIILQSYLDN 135


>gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase
 gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 151

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 3   ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           ++ IED             +DLG+KRIG++I D  +  A P   + +    +   EL   
Sbjct: 1   MITIEDFKIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKII 60

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           I   NI   I+G P+NM+GS G    S      N I + + +P + WDERL+TV A  + 
Sbjct: 61  IKDNNIGGIIVGNPVNMDGSLGRSAQSVNDVASN-ISKSIDLPVILWDERLSTVGAFNLS 119

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
             ++V+  KR++ +D  AAA ILQ  +D ++
Sbjct: 120 SLLDVNVSKRVKTIDQNAAAFILQGAIDFLN 150


>gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
 gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
          Length = 184

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
             +D+G  R+G ++SDP    A P   L R     +    L   +   ++    +GLP  
Sbjct: 10  MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 69

Query: 79  MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           M G E       R + H +      +   ++     DERLTTVSA + L +  VS +   
Sbjct: 70  MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 129

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             VD +AA  ILQ  LD +   ++  G
Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQAVAG 156


>gi|323493583|ref|ZP_08098704.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG
           20546]
 gi|323312106|gb|EGA65249.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG
           20546]
          Length = 140

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P ++ G +        + F + +  R   +     DERL+T+ A+  L +M   +     
Sbjct: 62  PTDLYGKDLETITPRAKKFANRLHGR-FGLAVELHDERLSTMEARADLFEMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 121 NVDCQSAVVILESWFE 136


>gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA
           331]
 gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493]
 gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase
 gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase
 gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
           331]
 gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
          Length = 141

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 15  PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           PNQ +     D G KRIG+A+       A+    L  +       ++   I T +    +
Sbjct: 2   PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P NM+GSE     + R F   +   +  +P    DERLTT+ A++   +  ++  KR
Sbjct: 62  VGIPYNMDGSEQTLTFAARKFARKL-QMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118

Query: 133 IQKVDSIAAALILQEVL 149
            Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135


>gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
 gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
          Length = 175

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
             +D+G  R+G ++SDP    A P   L R     +    L   +   ++    +GLP  
Sbjct: 1   MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 60

Query: 79  MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           M G E       R + H +      +   ++     DERLTTVSA + L +  VS +   
Sbjct: 61  MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 120

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             VD +AA  ILQ  LD +   ++  G
Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQAVAG 147


>gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens
           YS-314]
 gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 204

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
           P + I  +D+GT RIG+A SD   R A P   + R+   +         L+  IT  +  
Sbjct: 38  PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 96

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125
             ++GLP ++ G+    V   R     +  R       +P    DERLTTV A Q L   
Sbjct: 97  EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 156

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
            ++ +   + +D  AA  ILQ  LD
Sbjct: 157 GINERDGRKVIDQAAAVEILQTWLD 181


>gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis
           str. Paraca]
 gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 148

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 13  LKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + P   I    +D+G +RIG+A  D     A     +VR        +  + I    +  
Sbjct: 4   ITPKGYISALGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQI 63

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++GLP   NG  G +    + +   +  + + +P  ++DERLT++ A+++L    +   
Sbjct: 64  LVVGLPYLSNGELGTQARQIQKYTRRL-QKSLALPVEYFDERLTSIEAEEMLKGQKIPLS 122

Query: 131 KRIQKVDSIAAALILQEVLDRISF 154
           +    +D  AAALILQ+ LD+   
Sbjct: 123 ENKALIDRKAAALILQQWLDQRRH 146


>gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
           27029]
 gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
           27029]
          Length = 153

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
             +D+G  R+G+A  DP    A P   L R        V     EL+           ++
Sbjct: 10  LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+N+ G  GP   +  A+   + D    +P    DER++TV A + L +  V  K++ 
Sbjct: 70  GLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQR 129

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146


>gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5]
 gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5]
          Length = 153

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
             +D+G  R+G+A  DP    A P   L R        V     EL+           ++
Sbjct: 10  LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+N+ G  GP   +  A+   + D    +P    DER++TV A + L +  V  K++ 
Sbjct: 70  GLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQR 129

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146


>gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
 gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
          Length = 140

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      K       ++   I        ++GL
Sbjct: 2   SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61

Query: 76  PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   V     DERL+T  A+  L +M   +     
Sbjct: 62  PTDLHGKDLAAITPRAKKFANRLKGR-FGVDVELHDERLSTTEARADLFEMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD+ +A +IL+   +
Sbjct: 121 NVDNQSAVVILESWFE 136


>gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 199

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
             +D+GT R+G+AI D     A P   L R     + + +++  +        I+GLP  
Sbjct: 16  LGVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIVGLPRT 75

Query: 79  MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           M G E       R +       +  R + VP    DERL++V+A + L +  +S +   +
Sbjct: 76  MKGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSSRNHRK 135

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD +AAA ILQ  +D      +  G
Sbjct: 136 VVDQVAAAGILQHAIDMQKARGADVG 161


>gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
 gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32]
 gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
 gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32]
          Length = 140

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      K       ++   I        ++GL
Sbjct: 2   SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61

Query: 76  PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   V     DERL+T  A+  L +M   +     
Sbjct: 62  PTDLHGKDLAAITPRAKKFANRLKGR-FGVDVELHDERLSTTEARADLFEMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD+ +A +IL+   +
Sbjct: 121 NVDNQSAVVILESWFE 136


>gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
 gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase
 gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
          Length = 144

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + I +ID G KR GLA +DP   FA P      +K+      + SF+   ++   I+G
Sbjct: 5   PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKI---ITIIKSFLQENSVEKIIVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK--R 132
            PLN +G++ P       F+  +      +P    DE  ++  A ++LI+  +SRKK  R
Sbjct: 62  YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121

Query: 133 IQKVDSIAAALILQEVLDR 151
             ++DS AA L+LQ  L+ 
Sbjct: 122 KGRLDSAAACLLLQHYLEN 140


>gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 135

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 2/132 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A P              ++   I        ++GLP ++
Sbjct: 1   MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPNLLVVGLPTDL 60

Query: 80  NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G +        + F + +  R   +P    DERL+T  A+  L  M   +      VD 
Sbjct: 61  HGKDLETITPRAKKFANRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDC 119

Query: 139 IAAALILQEVLD 150
            +A +IL+   +
Sbjct: 120 QSAVVILESWFE 131


>gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
 gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
          Length = 137

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GT+RIG+A          P   L  +       ++   +        ++GLPLNM
Sbjct: 1   MAFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + +E       R F   +  R  +V     DERLT+  A+  ++    SR      VD  
Sbjct: 61  DDTENDMCARARKFGKRLHGR-FHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDR 119

Query: 140 AAALILQEVL 149
           AA LIL+   
Sbjct: 120 AAVLILETWF 129


>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 136

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID GTKR G+A++DP +  A     +    +      L  + T E +  F+IG P 
Sbjct: 2   RILAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAF---LKQYTTEEAVEGFVIGQPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            +N  +       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  
Sbjct: 59  RLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132


>gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
 gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
          Length = 190

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG 74
            ++D+GT R+G+A SDP    A P   L R              +             +G
Sbjct: 19  LAVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVG 78

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP +++G+EG      RA+   +      V     DER++TVSA   L     S ++  +
Sbjct: 79  LPRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHRE 138

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD  AA +ILQ  LD         G
Sbjct: 139 VVDQAAAVVILQHALDMERTTGRRPG 164


>gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium
           HTCC2207]
 gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium
           HTCC2207]
          Length = 145

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            ++ +   D G K+IG+A        A     L          ++   +T       ++G
Sbjct: 6   KHKRLLGFDFGLKQIGVASGQTLTLSATGLTILKAVDGIPNWEQVEKLLTEWKPDLVVVG 65

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+ SE    +  R F   +  R   V     DERLT+  A+ +  D      + + 
Sbjct: 66  LPLNMDDSESDLSNRARKFARRLQGR-FAVDVEMVDERLTSREAKSLGRDQGT---QDLT 121

Query: 135 KVDSIAAALILQEVLD 150
           K+D IAA+LILQ  LD
Sbjct: 122 KIDHIAASLILQSWLD 137


>gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
 gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
          Length = 137

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I ++D GTKR G+A++DP +  A     ++   +      L S++ +E ++  ++G 
Sbjct: 1   MKRIIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISF---LKSYMVSEPVSTIVLGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  M+ +      +  AF+  +      +     DER T+  A Q +I   + +KKR   
Sbjct: 58  PKQMDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEK 117

Query: 134 QKVDSIAAALILQEVLDRIS 153
            +VD I+A LILQ  L+RIS
Sbjct: 118 GRVDQISATLILQAYLNRIS 137


>gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 174

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 11/154 (7%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENIA 69
           P +    +D+GT RIG+A+S      A P   + R+   +         L++ IT  N+ 
Sbjct: 16  PGRR-LGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNNVV 74

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I+GLP ++ G+    V   +         +   ++ +P    DERL+TV A Q L   
Sbjct: 75  EVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRAS 134

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            VS K   + +D  AA  ILQ  LD R ++L  +
Sbjct: 135 GVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168


>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
 gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
 gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC
           15444]
          Length = 151

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 5/152 (3%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+++ + D    L     +  ID GT  IG+A +D  R  A P   +++KK+  +   LL
Sbjct: 1   MAVVDLFD----LPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLL 56

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                      I+GLPLN++GS GPR  S R  V +++  +  +P  F DER ++  A  
Sbjct: 57  HIYDERAAVGLIVGLPLNVDGSMGPRAQSVRTLVSSLLKVR-DLPVTFQDERYSSAEAGD 115

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
           I+     +R+ R  ++D+ AAA+ILQ+ L R+
Sbjct: 116 IMRAAGATRRNREARIDASAAAVILQDALSRL 147


>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 138

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKK+ ++   +       +    ++G+
Sbjct: 1   MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKI-KSVKRIAEICKENDTNLIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL ++N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA++ILQ  LD
Sbjct: 120 VVDKVAASIILQTYLD 135


>gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           HTCC5015]
 gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           HTCC5015]
          Length = 141

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  ID G KRIG+A        A P   L           L   +      A ++GLPL
Sbjct: 3   TLLGIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGLPL 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL----IDMNVSRKKRI 133
           N +GS+       R F  + + +    P  + DER ++  A+Q L       ++ RK + 
Sbjct: 63  NKDGSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKVKK 121

Query: 134 QKVDSIAAALILQEVLDR 151
           + +D +AAALILQ  L++
Sbjct: 122 EDIDQLAAALILQRWLNK 139


>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 147

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
                  ID+G  R+G+A SDP    A P   + R+     AL  +  I  E +    +I
Sbjct: 2   RRGRRLGIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVI 61

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G P +++G         R F   ++DR   +P  + DER TT  A  +L +   + K+R 
Sbjct: 62  GDPTSLDGKARQSADKARRFAQKIVDR-TGLPVRYVDERFTTTQAHLMLQEAGKTSKQRR 120

Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
           + VD+ AA +ILQ  LD ++  ++S
Sbjct: 121 ETVDAQAAVVILQTALDALAREDNS 145


>gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM
           10152]
 gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase
 gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 180

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTEN 67
                   ID+G+ RIG+A SDP    A P   + R K      V+     +   +    
Sbjct: 16  PGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYE 75

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               I+GLP  + G +G    +  AF   +      V     DERLTTVSA + L D  V
Sbjct: 76  AVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGV 135

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
             + + Q +D  AA  ILQ  LD  S +  S G
Sbjct: 136 RARGQRQVIDQAAAVSILQGWLDERSAVMRSVG 168


>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
 gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
          Length = 153

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              +  +D GT RIGLAI+DP ++FA P     R+     A         E  AA+++GL
Sbjct: 7   RGRLIGVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGL 66

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P++  GSE  +    R F   + +    +P   +DER T+  A+++LI   +SRK+R   
Sbjct: 67  PVHTTGSESQKSTEARQFAKQL-EELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSH 125

Query: 136 VDSIAAALILQEVL 149
           +D +AA ++L   L
Sbjct: 126 LDKLAAQILLSAFL 139


>gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
           14018]
          Length = 156

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
             IDLG  R+G A+SDP   FAHP   +           ++L+ I   +++  +IGLPL 
Sbjct: 4   LGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
           ++G+EG      R +  N++ R   +              V+ DERLTTV+A + L+D +
Sbjct: 64  LDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDAD 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
            S +K    VD  +A LILQ  +D
Sbjct: 124 FSTRKHRPMVDQQSAVLILQSAID 147


>gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
           15434]
 gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
           15434]
          Length = 160

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 55/131 (41%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D+G  R+G+A  D     A P   L R +      E    +        ++GLP+ +
Sbjct: 9   LAFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQL 68

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G         R +   +  R   VP    DERL+TVSA Q L       K     VD  
Sbjct: 69  SGGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQA 128

Query: 140 AAALILQEVLD 150
           AA +IL++ L+
Sbjct: 129 AAVVILEQALE 139


>gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
 gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
          Length = 173

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAA 70
           +++P   I  +D+GT RIG+A+SDP  R A P   L R          L   +       
Sbjct: 5   AVRPGVRI-GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAVE 63

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++GLP+++ G+ G        +   +      VP    DER TTV A + L    ++ +
Sbjct: 64  VVVGLPVSLRGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAGR 123

Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +R   VD +AAA++LQ+ LD         G
Sbjct: 124 QRRAVVDQLAAAILLQDALDAERATGRPPG 153


>gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187]
 gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165]
 gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137]
 gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187]
 gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165]
 gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137]
 gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266]
          Length = 160

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 16  LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 74  NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133

Query: 140 AAALILQEVLDRISFLES 157
           AA  IL+ VL+++   +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151


>gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
           BAL38]
 gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
           BAL38]
          Length = 137

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID G KR G+A++D  +  A     +  +        L  + + E + + IIG P 
Sbjct: 3   RILAIDYGIKRTGIAVTDEMQMIAFGLTTIPSET---AITFLKDYFSKEKVESVIIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MNG          AFV    +    +P    DER T+  A Q +ID  +++K+R  K  
Sbjct: 60  QMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKAL 119

Query: 136 VDSIAAALILQEVL 149
           VD IAA +ILQ+ L
Sbjct: 120 VDEIAATIILQDYL 133


>gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens
           DSM 45100]
          Length = 192

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
            +S         ID+GT RIGLA+SDP    A P   +  +       ++   +    + 
Sbjct: 34  AQSDPGRGRRLGIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVV 93

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-----VPFVFWDERLTTVSAQQILID 124
             IIGLP+ + G+        +AF   + D         +P    DER++TV+A   +  
Sbjct: 94  EVIIGLPVALRGNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHA 153

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
             V+ KK  +++D  AA  ILQ  LD
Sbjct: 154 SGVNVKKGRKRIDQAAAVHILQGWLD 179


>gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 144

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G+ RIG+AISDP   FA    FL  +      L LL  I   N+   +IGLP+ 
Sbjct: 4   ILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLTLL--IRKHNVKKVVIGLPIR 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            NG +     +       + ++   + F+ WDER TT  AQ  L D  +S KK+  +VD 
Sbjct: 62  TNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNRVDM 121

Query: 139 IAAALILQEVLDRIS 153
           IAA ++LQ  LD  +
Sbjct: 122 IAATVLLQSYLDYSN 136


>gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
 gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
          Length = 141

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I  ID GTKRIG+A SDP   FA P      + +      L      E I   ++G 
Sbjct: 5   HKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGL---LGALSKIRNEEGIERIVVGY 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PL+  G E         F   +      VP    DE  ++ SA ++L     SRKKR   
Sbjct: 62  PLSDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEK 121

Query: 134 QKVDSIAAALILQEVLDRIS 153
            ++D+ AA LILQ  LD  +
Sbjct: 122 GRLDTAAACLILQSWLDSRA 141


>gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens
           F0305]
 gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Parascardovia denticolens DSM 10105]
 gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens
           F0305]
 gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Parascardovia denticolens DSM 10105]
          Length = 176

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 14  KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAF 71
           +P++ +   +DLG  R+G+AISDP   FAHP   +       Q   E+   I    ++  
Sbjct: 27  RPSRSVWLGLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHV 86

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-----YVPFVFWDERLTTVSAQQILIDMN 126
           +IG PL ++G+EG      R F   +  R        V     DER+TTV A   L+D  
Sbjct: 87  VIGYPLQLDGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAG 146

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           +  ++    VD  +A LILQ  LD
Sbjct: 147 IGSRRHRPLVDQQSAVLILQAALD 170


>gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 174

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 11/154 (7%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENIA 69
           P +    +D+GT RIG+A+S      A P   + R+   +         L++ IT  ++ 
Sbjct: 16  PGRR-LGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNDVV 74

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
             I+GLP ++ G+    V   +         +   ++ +P    DERL+TV A Q L   
Sbjct: 75  EVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRAS 134

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            VS K   + +D  AA  ILQ  LD R ++L  +
Sbjct: 135 GVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168


>gi|269965748|ref|ZP_06179845.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B]
 gi|269829616|gb|EEZ83853.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B]
          Length = 136

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A P              ++   I        ++GLP ++
Sbjct: 1   MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60

Query: 80  NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G +        R F   +  R   +P    DERL+T  A+  L  M   +      VD 
Sbjct: 61  HGKDLETITPRARKFAKRLQGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKGNVDC 119

Query: 139 IAAALILQEVLDRI 152
            +A +IL+   + +
Sbjct: 120 QSAVVILESWFEAL 133


>gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
 gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
          Length = 141

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P              ++   I        ++GL
Sbjct: 2   SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLVVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G +        + F + +  R   V     DERL+T  A+  L  M   +     
Sbjct: 62  PTDLHGRDLETITPRAKKFANRLHGR-FGVAVELHDERLSTTEARADLFAMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 121 NVDCQSAVVILESWFE 136


>gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1]
 gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter
           aurescens TC1]
          Length = 196

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
           P+     +D+GT R+GLA+ DP    A P   + R  K       L+            +
Sbjct: 11  PHGIKLGVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFV 70

Query: 74  GLPLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           GLP  M G E         +       ++   + VP    DERL+TV+A + L    +S 
Sbjct: 71  GLPRTMKGEERASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSS 130

Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           K   + VD +AAA ILQ  +D    ++ ++G
Sbjct: 131 KNHRKVVDQVAAAGILQHAID----MQKARG 157


>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
 gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
          Length = 143

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID GTKR G+A++DP +  A     +    +      L  +   E + AF+IG P 
Sbjct: 2   RLLAIDYGTKRTGIAVTDPLQIIASGLCTVETSTLLAF---LKQYTAEEAVEAFVIGQPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MN  +       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  
Sbjct: 59  RMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132


>gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23]
 gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23]
          Length = 137

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I SID G KR GLA++DP +  A     +   ++      L ++I  E +   +IG 
Sbjct: 1   MARILSIDYGKKRTGLAVTDPLQIIAGGLATVATSELFDF---LKAYIAREQVEMIVIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P   NG     +   + FV+        VP  ++DER T+V A Q ++D  + +K R   
Sbjct: 58  PRQPNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNK 117

Query: 134 QKVDSIAAALILQEVL 149
             VD I+A +IL++ +
Sbjct: 118 GLVDEISATIILEDFM 133


>gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
 gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
          Length = 137

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR G+A+SDP R  A     +  K + +    L  +    +++  +IG 
Sbjct: 1   MGRILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERW---LAQYFAANDVSTIVIGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ M+G+              +         VF+DER T+V A + +++  + +  R  K
Sbjct: 58  PMQMSGAPSETWRYVEPLAARLRRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             VD I+A +ILQ  ++  S
Sbjct: 118 ALVDKISATIILQGYMESRS 137


>gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN]
 gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae
           Br4923]
 gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase
 gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase
 gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 184

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%)

Query: 8   DLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           DL K+L P +     ID+G+ RIG+A SDP    A P   + R +  +    L   +   
Sbjct: 16  DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
            +   ++GLP  +    G            +  R   VP    DERLTTVSAQ++L    
Sbjct: 76  QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISF 154
           V  K +   +D  AA +ILQ  LD+   
Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQCRA 163


>gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium
           SWAT-3]
 gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium
           SWAT-3]
          Length = 140

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      K       ++   I        ++GL
Sbjct: 2   SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61

Query: 76  PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F + +  R   V     DERL+T  A+  L DM   +     
Sbjct: 62  PTDLHGRALETITPRAKKFANRLKGR-FGVDVELHDERLSTAEARADLFDMGGYKALSKG 120

Query: 135 KVDSIAAALILQEVLD 150
            VD+ +A +IL+   +
Sbjct: 121 NVDNQSAVVILESWFE 136


>gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL001PA1]
          Length = 160

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 16  LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E     + R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 74  NGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133

Query: 140 AAALILQEVLDRISFLES 157
           AA  IL+ VL+++   +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151


>gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
 gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
          Length = 137

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR G+A++D  +  A+    +    +      L +++  E +   +IG P+
Sbjct: 2   RILSIDYGKKRTGIAVTDSLQIIANGLATVATSALFDF---LKTYVAQEEVERIVIGKPM 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG         + FV+        +P  F+DER T+V A Q ++   + +K R  K  
Sbjct: 59  QTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKAL 118

Query: 136 VDSIAAALILQEVLDRIS 153
           VD ++A +ILQ  ++   
Sbjct: 119 VDEVSATIILQSYMESRR 136


>gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 143

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + I  +D+G K +G+A+SD     A       +             +T  NI   + GLP
Sbjct: 3   EKILGLDIGDKYVGIAVSDALGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +M+G E  +V  T+ + + +  R + +  ++ DERLTT +++ +LI   V R+ R Q +
Sbjct: 63  KDMDGRETAQVRKTKNYCNFLAKR-LGLEVIYIDERLTTRASEAVLIAGGVRRENRKQHI 121

Query: 137 DSIAAALILQEVLDRIS 153
           D+++A LILQ  LDR +
Sbjct: 122 DTLSAQLILQMYLDREN 138


>gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
 gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
          Length = 188

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
           P + I  +D+GT RIG+A SD   R A P   + R+   +         L+  IT  +  
Sbjct: 22  PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 80

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125
             ++GLP ++ G+    V   R     +  R       +P    DERLTTV A Q L   
Sbjct: 81  EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 140

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
            ++ +   + +D  AA  ILQ  LD
Sbjct: 141 GINERDGRKVIDQAAAVEILQTWLD 165


>gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
           14019]
 gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC
           14019]
          Length = 166

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
             IDLG  R+G A+SDP   FAHP   +           ++L+ I   +++  +IGLPL 
Sbjct: 14  LGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQ 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
           ++G+EG      R +  N++ R   +              V+ DERLTTV+A + L+D +
Sbjct: 74  LDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDAD 133

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
            S +K    VD  +A LILQ  +D
Sbjct: 134 FSTRKHRPMVDQQSAVLILQSAID 157


>gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
 gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
          Length = 139

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP R  A+    +   ++      L+++I +E +   +IG 
Sbjct: 1   MGRILAIDYGKKRTGIAVTDPLRIIANGLATVPTSELYDY---LVAYIRSEAVDKIVIGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P+  NG           F +     +  +P  F+DER T+V A Q +I   V +K R   
Sbjct: 58  PIQANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRRED 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDFM 134


>gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202]
 gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase
 gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium
           acnes KPA171202]
          Length = 160

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 16  LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 74  NGTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133

Query: 140 AAALILQEVLDRISFLES 157
           AA  IL+ VL+++   +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151


>gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735]
 gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735]
          Length = 144

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I SID G KR GLA++D  +  A+    +    +      L  +I  E +   +IG 
Sbjct: 1   MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSL---IDYLKDYIAKEPVERIVIGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ- 134
           P   +G     +     FV+        +P  ++DER T+V A Q++ID  V +K R + 
Sbjct: 58  PTQPDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKEN 117

Query: 135 --KVDSIAAALILQEVL 149
              +D I+A +ILQ+ +
Sbjct: 118 KGLIDEISATIILQDYM 134


>gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
 gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
 gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
 gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
 gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus
           04-02981]
          Length = 123

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 33  ISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
           +SD     A       +  +       +L+  I   N+   +IGLP NMN S G R  ++
Sbjct: 1   MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEAS 60

Query: 91  RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
             +   +++    +  V WDERL+T++A++ L++ +VSR+KR Q +D +AA  ILQ  LD
Sbjct: 61  LTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLD 120

Query: 151 RI 152
            +
Sbjct: 121 SL 122


>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 143

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +  +D+G K +G+A+SDP    A P   L R      A  ++  +   + A  +IGLP
Sbjct: 3   ERVIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK--KRIQ 134
             +NG  G +    + F   +      VP +F DER +T SA+ I+      RK     +
Sbjct: 63  RLLNGVVGTQAERVQYFARRLAS-LTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRE 121

Query: 135 KVDSIAAALILQEVLDR 151
           + D++AAA+ILQ+ LD 
Sbjct: 122 RDDAVAAAVILQDWLDE 138


>gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia
           heliotrinireducens DSM 20476]
 gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia
           heliotrinireducens DSM 20476]
          Length = 138

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIGLA+SD   R A P   L    V     E    +    I   + GLP 
Sbjct: 2   RVLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            M G EGP+  S +     +   +  +P  F DERL++  A++IL +  +  +    KVD
Sbjct: 62  TMAGEEGPQAASIKEKARQIASAR-DLPLSFVDERLSSAEAKRILREEGLDERSMRGKVD 120

Query: 138 SIAAALILQEVLDR 151
            IAA+L LQ  LD 
Sbjct: 121 MIAASLFLQAWLDS 134


>gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
 gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
          Length = 141

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GTK IG AI       A P      K       ++ + +        ++GL
Sbjct: 3   SRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVGL 62

Query: 76  PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +++G          + F  N +  +  +     DERL+T  A+  L +M   +     
Sbjct: 63  PTDLHGKALEEITARAKKFA-NRVHGRFGLQVELHDERLSTAEARAELFEMGGYKALSKG 121

Query: 135 KVDSIAAALILQEVLD 150
            VD  +A +IL+   +
Sbjct: 122 NVDCQSAVVILESWFE 137


>gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium
           SGP1]
          Length = 146

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGL 75
             + ++D+G+ R+G AISDP R  A                    + +        ++G+
Sbjct: 7   GRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPTLVLVGM 66

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +G+ GP        V  +      + F  WDER TTV A + +I+  VSR  R Q+
Sbjct: 67  PTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSRSGRRQR 126

Query: 136 VDSIAAALILQEVLDR 151
           VD IAA LIL+  L R
Sbjct: 127 VDKIAAVLILESWLAR 142


>gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium
           SCB49]
 gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium
           SCB49]
          Length = 136

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +  A     +   K+      L S++  EN+ A ++G 
Sbjct: 1   MGRILAIDYGGKRTGIAVTDEMQIIASGLTTVETSKLLPF---LESYLANENVTALVVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   +G+        + F+   +     +P    DER T+  A Q +ID  + +K+R  K
Sbjct: 58  PTQKDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNK 117

Query: 136 --VDSIAAALILQEVL 149
             VD IAA +ILQE +
Sbjct: 118 ALVDEIAATIILQEFM 133


>gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
 gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
          Length = 166

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  RIGLA+SDP   FAHP   +           +++  I    ++  ++G PLN
Sbjct: 8   LGLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHIVLGYPLN 67

Query: 79  MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           ++G+EG      R F       + +  +       DER+TTVSA  +L+   +S ++   
Sbjct: 68  LDGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGMSSRQHRA 127

Query: 135 KVDSIAAALILQEVLDR 151
            VD+ +A +ILQ  LD 
Sbjct: 128 VVDTQSAVVILQSALDS 144


>gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
 gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
          Length = 139

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I S+D G KR GLA++DP +  A+    +   ++      L  ++  EN+   ++G 
Sbjct: 1   MGRILSVDYGKKRTGLAVTDPLQIIANGLVTVATSELFDF---LKDYVQRENVECIVVGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P  +NG     +     FV+        +P  ++DER T+  AQQ ++   V +K R   
Sbjct: 58  PTQLNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRRED 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD ++A +ILQ+ +
Sbjct: 118 KGLVDEVSATIILQDYM 134


>gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
           49989]
 gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
           49989]
          Length = 148

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 6/146 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G   IG+A SD     A     + R+ + +   +++  +  ++ +  +IG+PL
Sbjct: 2   RVLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMPL 61

Query: 78  NMNGS-EGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           N  G  +  +   T  F   + ++        +   F+DER TT  A+ +LI   +  KK
Sbjct: 62  NTYGEAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGKK 121

Query: 132 RIQKVDSIAAALILQEVLDRISFLES 157
           +   +D  AA ++LQ  LD+ S+ + 
Sbjct: 122 QKDVIDKQAAVILLQSYLDKKSYRDE 147


>gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
           33269]
 gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
           33269]
          Length = 137

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR G+A++DP +  A     +   ++      L+ ++  E +   +IG P+
Sbjct: 3   RILSIDYGRKRTGVAVTDPLQLIAGGLATVATSELFNY---LMQYVQHEEVERIVIGKPM 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG     +     FV         +P  ++DER T+V AQ+++ID  + +K R  K  
Sbjct: 60  QTNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKAL 119

Query: 136 VDSIAAALILQEVL 149
           VD I+A +IL++ +
Sbjct: 120 VDEISATIILEDWM 133


>gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae
           UW101]
 gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase
 gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101]
          Length = 138

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID G KR G+A++D  +  A     +    +      L  +   E + A +IG P 
Sbjct: 3   RILSIDYGQKRTGIAVTDEMQIIASGLTTIPTHTLIDF---LKDYFAKEKVEAVLIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
            MNG           FV +  +    +  +  DER T+  A Q ++D  +S+K+R     
Sbjct: 60  QMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGL 119

Query: 136 VDSIAAALILQEVLDRISF 154
           +D I+A ++LQ+ L    F
Sbjct: 120 IDEISATIMLQDYLSSKRF 138


>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
 gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
          Length = 143

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID GTKR G+A++DP +  A     +    +      L  +   E + AF+IG P 
Sbjct: 2   RLLAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAF---LKQYTAEEAVEAFVIGQPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MN  +       + F+  +      +P    DER T+  A Q +ID  + +K+R  K  
Sbjct: 59  RMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118

Query: 136 VDSIAAALILQEVL 149
           +D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132


>gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116]
          Length = 136

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A P              ++   I        ++GLP ++
Sbjct: 1   MAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60

Query: 80  NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G +        + F + +  R   +P    DERL+T  A+  L  +   +      +D 
Sbjct: 61  HGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTAEARAELFSIGGYKALSKGNIDC 119

Query: 139 IAAALILQEVLDRI 152
            +A +IL+   + +
Sbjct: 120 QSAVVILESWFENL 133


>gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
 gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
          Length = 135

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D G ++IG+A+     R A P   L  +        + + I     +A ++GLP 
Sbjct: 2   TLLGFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPF 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            M+ +E         F   + + +  +P    DERLT+  A + L + +  R   ++ VD
Sbjct: 62  QMDDTEVAWSPRVHRFARQL-EGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAVD 119

Query: 138 SIAAALILQEVL 149
           ++AAALIL+  L
Sbjct: 120 ALAAALILETWL 131


>gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase
          Length = 181

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
           P + I  +D+GT RIG+A SD   R A P   + R+   +         L+  IT  +  
Sbjct: 15  PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 73

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125
             ++GLP ++ G+    V   R     +  R       +P    DERLTTV A Q L   
Sbjct: 74  EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 133

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
            ++ +   + +D  AA  ILQ  LD
Sbjct: 134 GINERDGRKVIDQAAAVEILQTWLD 158


>gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL082PA2]
 gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL060PA1]
 gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL050PA2]
 gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL103PA1]
          Length = 160

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 16  LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 74  NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133

Query: 140 AAALILQEVLDRISF--LESSKG 160
           AA  IL+ VL+++    LE++ G
Sbjct: 134 AAVAILEHVLEQVRLGQLETATG 156


>gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302]
 gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302]
          Length = 144

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I SID G KR GLA++D  +  A+    +    +      L  +I  E +   +IG 
Sbjct: 1   MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSL---IDYLKDYIAKEPVERIVIGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ- 134
           P   +G     +     FV+        +P  ++DER T+V A Q++ID  V +K R + 
Sbjct: 58  PTQPDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKEN 117

Query: 135 --KVDSIAAALILQEVL 149
              +D I+A +ILQ+ +
Sbjct: 118 KGLIDEISATIILQDYM 134


>gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
 gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
          Length = 139

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++DP R  A+    +      +    L  +I  E +   ++G 
Sbjct: 1   MGRIIAIDYGKKRTGIAVTDPLRIIANGLATV---STPELYAFLQEYIQREKVDLIVMGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P  ++G     +     FV         VP  ++DER T+  A Q +I   V +K R   
Sbjct: 58  PTQLSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQD 117

Query: 133 IQKVDSIAAALILQEVL 149
              VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDFM 134


>gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 124

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
            +  +D+G+K +G+A+SDP    A     +   +  +      L   +    +  F++GL
Sbjct: 2   RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P NMN S GPR  ++ ++    I     +P  + DERLTTV A+++L++  N SR KR +
Sbjct: 62  PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120


>gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 183

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
                  ++D+GT RIG+A+S+     A P   + R+     +       +L  I + + 
Sbjct: 14  PGQGRRLALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDA 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
              ++GLP ++ G+    V   +     +  R        KV  P    DERLTTV+A  
Sbjct: 74  VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            L    VS KK  + +D  AA  ILQ  LD R S L S 
Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172


>gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 140

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFII 73
            +    ID G  RIG+A+SD     A     +    ++ T+    +        +AA +I
Sbjct: 1   MEKYLGIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVI 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP   +G  G      R    +++     +  ++ DER TTV A ++L +  V ++++ 
Sbjct: 61  GLPRRTDGKIGVSEEKARQLG-DLLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKR 119

Query: 134 QKVDSIAAALILQEVLDRIS 153
             VD +AA +ILQ+ L+ + 
Sbjct: 120 SVVDQVAAEIILQDFLESLR 139


>gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 149

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID G KRIG+A+SDP    A     + R    +   E+      EN+   ++GLPL+
Sbjct: 3   VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
           M+G EG      R      I+    +P    DERLT+V A++ L++      K   +   
Sbjct: 63  MSGYEGEEAVRARELAKQ-IETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKKLA 121

Query: 136 VDSIAAALILQEVLDRISFLESS 158
           +D+ AAA++LQ+ LD+    + +
Sbjct: 122 IDAEAAAVLLQDYLDQERLRQRA 144


>gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii
           CbuK_Q154]
 gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase
 gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
          Length = 141

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 15  PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           PNQ +     D G KRIG+A+       A+    L  +       ++   I T +    +
Sbjct: 2   PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHANVLV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P NM+GSE     + R F   +  R   +P    DERLTT+ A++   +  ++  KR
Sbjct: 62  VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPLSMVDERLTTIEAKRQWYEQGLT--KR 118

Query: 133 IQKVDSIAAALILQEVL 149
            Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135


>gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC1989]
 gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium
           IMCC1989]
          Length = 139

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D G + IG+A        A     +  K       ++ + +        ++GLPLNM
Sbjct: 6   LAFDYGLQNIGVAYGQSLTGQATELAPINAKDGIPRWEDIAALLQEWKPTTVVVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       R F   +  R   V   F DERL+T  A+Q           +   +DSI
Sbjct: 66  DDSESELCARARKFGRRLHGR-FSVDVEFMDERLSTFDAKQEAKARGHKGNYKQNPIDSI 124

Query: 140 AAALILQEVL 149
           AA LIL+   
Sbjct: 125 AARLILESWF 134


>gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 143

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
            + P+  ID G +RIG+A+             L   +           +      A ++G
Sbjct: 4   RSGPLLGIDFGERRIGIAVLGESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLG 63

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL+M+GSEG  V   R F  ++  R+  +P  + DERL++ +A  +L +  +S KKR +
Sbjct: 64  LPLHMDGSEGFMVGRVRKFAESL-QRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGR 122

Query: 135 KVDSIAAALIL 145
            +D  AA  IL
Sbjct: 123 LLDQAAACEIL 133


>gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237]
 gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237]
          Length = 136

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D G  R G+A++D  +  A     +  K++      L +++ TE +   ++G 
Sbjct: 1   MARIVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDF---LKNYVATEKVELLVVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN            F+  +      +     DER T+  A Q +ID  + +K+R  K
Sbjct: 58  PKQMNNQVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRDK 117

Query: 136 --VDSIAAALILQEVLDRI 152
             VD I+A +ILQ  L+RI
Sbjct: 118 ALVDEISATIILQAYLNRI 136


>gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens
           BL2]
          Length = 150

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+ RIG+A SDP    A P   + R         L   I        +IG P ++
Sbjct: 1   MGLDIGSVRIGVAASDPDGILATPLTVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS      +   F    I      P    DER TTV A   L     + ++R + VD+ 
Sbjct: 61  DGSARAAAATALEFAKR-ISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119

Query: 140 AAALILQEVLDR 151
           AA +ILQ  L+ 
Sbjct: 120 AAVIILQNALEY 131


>gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
 gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
          Length = 140

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              +  ID GTKR GLA +DP +  A     L   +V      L  +   E +  F++G 
Sbjct: 1   MGSLIGIDFGTKRTGLACTDPLKIIASGLKNLSTPEVIPF---LKKYCEMEEVDTFVVGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PL  +G+        + F+  + ++        +DER T+  A Q +I+  + +K+R   
Sbjct: 58  PLQKDGTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADK 117

Query: 134 QKVDSIAAALILQEVLD 150
             +D ++A LILQ  LD
Sbjct: 118 GMIDQVSATLILQSYLD 134


>gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810]
 gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium
           DSM 4810]
          Length = 181

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 7/164 (4%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS+           P      +D+G  R+GLA SD     A P   L R         ++
Sbjct: 1   MSVAEGTGAEAGGLPRGVRLGVDVGDVRVGLARSDLDGMIATPVETLERGS---AVARVV 57

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTV 116
                      ++GLP ++NG+EG      R F   ++         +     DERLTTV
Sbjct: 58  EEARELEARVIMVGLPRSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTV 117

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +A Q L       +K    VD +AA +ILQ+ LD      +  G
Sbjct: 118 TAHQALHRSGRKGRKHRSVVDQVAAVMILQQALDTERATGARAG 161


>gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 162

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KR+G+A  D     A     ++R        +  + +   NI   + GLP  M
Sbjct: 7   LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G  G +    + +   +    + +P  + DER T++ A++ L             +D  
Sbjct: 67  AGELGFQAKQVQKYAQKLA-ITLDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125

Query: 140 AAALILQEVLDRISFLESS 158
           AAA+ILQ+ LDR   + +S
Sbjct: 126 AAAIILQQWLDRRRRVNNS 144


>gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
           F0204]
 gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
           F0204]
          Length = 139

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
               +DLG+   G++ SD     A     +  K         ++L  +  E     ++GL
Sbjct: 3   RYLGLDLGSVTCGVSFSD-TGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL +N   GPR      F   + +++  +P    DER TT  A+ IL++ +VSRKKR +K
Sbjct: 62  PLLLNDDVGPRAQICLEFGEVL-EQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKK 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA  ILQ  LDR
Sbjct: 121 IDQLAAVQILQTWLDR 136


>gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
 gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
          Length = 143

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
              D G +R+G+A+  P    A P   L  ++       LL  I      A ++G+P + 
Sbjct: 7   LGFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHT 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137
           +GS         AF   + +++  +P    DERL++  A+  L       +       VD
Sbjct: 67  DGSASETTLQAVAFAQRL-EQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVD 125

Query: 138 SIAAALILQEVLDRISFL 155
             AA +IL+  L+    L
Sbjct: 126 QFAAQIILETWLNEQRLL 143


>gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17]
 gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17]
          Length = 156

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP   FAHP   +       +   ++++ I  E +   ++GLPL 
Sbjct: 8   LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
           ++G+EG      R +  N+  R   +                 DERLTTVSA + L++  
Sbjct: 68  LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 127

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           +  ++    VD  +A +ILQ  LD
Sbjct: 128 LGSRRHRPVVDQQSAVVILQTALD 151


>gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 148

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           LK    I +ID GTKR G+A++D  +  A     +   + T+    L  +  +E++   I
Sbjct: 10  LKAQMRILAIDYGTKRCGIAVTDELKLIASALATV---ETTELLDFLQQYCQSESVERII 66

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP   +G       +  +F+  + ++   +P   +DER T+  A  IL++    +KKR
Sbjct: 67  IGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKKR 126

Query: 133 --IQKVDSIAAALILQEVLDRI 152
                +D I+A LILQ+ L  +
Sbjct: 127 QDKALLDRISATLILQDYLSSL 148


>gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
 gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
          Length = 133

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT++IG+A  +     A P   L  K       ++ + +      A ++GLPLN
Sbjct: 2   ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS+       R F + +  R         DERL+T  A++      + +     +VDS
Sbjct: 62  MDGSDSESTARARKFANRLHGR-FGKKVWLVDERLSTREARER---TGIQKAD--PRVDS 115

Query: 139 IAAALILQEVL 149
           +AA +I +   
Sbjct: 116 MAAVVIAEGYF 126


>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
 gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
          Length = 166

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
                  ++D+G+ R+G+A+SDP    A P   L R  K       L   +T   +   I
Sbjct: 17  PGRGRRLAVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVI 76

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP  +   +G       A+   +  R   VP    DERLTTV+A ++L    V  +K+
Sbjct: 77  VGLPRTLANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQ 136

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
              VD  AA  ILQ  LD  +   + KG
Sbjct: 137 RAVVDQAAAVEILQAWLDAAAAHRARKG 164


>gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 183

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
                  ++D+GT RIG+A+S+     A P   + R+     +       +L  I + + 
Sbjct: 14  PGQGRRLALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDA 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
              ++GLP ++ G+    V   +     +  R        KV  P    DERLTTV+A  
Sbjct: 74  VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
            L    VS KK  + +D  AA  ILQ  LD R S L S 
Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172


>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
 gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 141

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G +RIG+A++D     A+P   L R    +    +   I    +   + GLP 
Sbjct: 2   RLMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++G  GP+     +F+  +  R   VP + WDERLTT   +++L+  ++ R++R + VD
Sbjct: 62  TLSGQIGPQGDKVLSFLDKLRVRST-VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVD 120

Query: 138 SIAAALILQEVLDRIS 153
            +AA LIL   L+   
Sbjct: 121 KLAATLILNSYLNSRK 136


>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
 gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 144

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID GT+R G+A++D     A PR  +V         ELLS +  E  A  ++GLPL  
Sbjct: 4   LGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLA 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G E       R FV  +  R+  +P     E L++  A + L +  +S ++R   VD  
Sbjct: 64  GGEETLITRQVRNFVARL-RRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQ 122

Query: 140 AAALILQEVLD 150
           AA  IL+  L+
Sbjct: 123 AAVRILESFLN 133


>gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL013PA1]
 gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL074PA1]
 gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA1]
 gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA2]
 gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL087PA2]
 gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL083PA1]
 gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL025PA1]
 gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL059PA1]
 gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL046PA2]
 gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL036PA1]
 gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL036PA2]
 gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL063PA1]
 gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL063PA2]
 gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL007PA1]
 gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL056PA1]
 gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL086PA1]
 gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA4]
 gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL050PA1]
 gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL050PA3]
 gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL036PA3]
 gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL067PA1]
 gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL027PA1]
 gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL002PA1]
 gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL002PA2]
 gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL082PA1]
 gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL037PA1]
 gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL053PA1]
 gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL045PA1]
 gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL072PA2]
 gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA1]
 gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA2]
 gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL005PA3]
 gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL053PA2]
 gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL078PA1]
 gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL027PA2]
 gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL002PA3]
 gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL072PA1]
 gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL038PA1]
 gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL059PA2]
 gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL046PA1]
 gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL030PA1]
 gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL030PA2]
 gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL096PA2]
 gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL097PA1]
 gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL096PA3]
 gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL013PA2]
 gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL043PA2]
 gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL043PA1]
 gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL087PA3]
 gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL092PA1]
 gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL083PA2]
 gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL025PA2]
 gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL020PA1]
 gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL087PA1]
 gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes
           HL099PA1]
          Length = 147

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 3   LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 61  NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120

Query: 140 AAALILQEVLDRISFLES 157
           AA  IL+ VL+++   +S
Sbjct: 121 AAVAILEHVLEQVRLGQS 138


>gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA3]
 gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL110PA4]
          Length = 160

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 16  LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 74  NGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133

Query: 140 AAALILQEVLDRISF--LESSKG 160
           AA  IL+ VL+++    LE++ G
Sbjct: 134 AAVAILEHVLEQVRLGQLETATG 156


>gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
           16]
 gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
           16]
          Length = 136

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S D GTK IG AI       A P              ++   I        ++GLP ++
Sbjct: 1   MSFDFGTKSIGSAIGQEVTGTASPLRAFKANDGIPNWDDIEKLIKEWQPDLLVVGLPTDL 60

Query: 80  NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G +        + F + +  R   +P    DERL+T  A+  L +M   +      VD 
Sbjct: 61  HGRDLETITPRAKKFANRLHGR-YGLPVELHDERLSTTEARADLFNMGGYKALSKGNVDC 119

Query: 139 IAAALILQEVLD 150
            +A +IL+   +
Sbjct: 120 QSAVVILESWFE 131


>gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas]
 gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase
 gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 156

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    +++ +K +   + I  +D G K+IG+A+SD     A P    VR+   +    L 
Sbjct: 1   MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLY 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           S     ++ + +IG PL ++G E         F + +I R   +     DER +T  A +
Sbjct: 61  SIFVENDVGSIVIGWPLELSGVENELCQKVVMFANRIITR-YKINICLHDERYSTAMATR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           +    N+ RK+     D I+A LILQ+VLD I   +
Sbjct: 120 LAKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQ 155


>gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans
           DMS010]
 gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans
           DMS010]
          Length = 125

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 27  KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86
           K IG+A+       A+P   +  +       ++   +        I+GLPLNM+G+E   
Sbjct: 2   KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61

Query: 87  VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVDSIAAAL 143
             + R F + +  R   +P  + DERLTT  A   L  M +  K   ++   VD ++A L
Sbjct: 62  TAAARRFGNRLHGR-FNIPVEWQDERLTTYEA---LDQMGIRSKMDTRQRSDVDQLSAQL 117

Query: 144 ILQEVLDR 151
           ILQ  L++
Sbjct: 118 ILQSWLNQ 125


>gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase
 gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 137

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID G KR G+AI+D  +  A     +  +        L  + T E +   +IG P 
Sbjct: 3   RILAIDYGQKRTGIAITDEMQIIASGLTTIASETSIAF---LRDYFTKEKVEKVLIGEPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            MNG           FV    +    +     DER T+  A Q +ID  + +K+R  K  
Sbjct: 60  QMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119

Query: 136 VDSIAAALILQEVLDR 151
           VD I+A ++LQ+ L R
Sbjct: 120 VDEISATIMLQDYLTR 135


>gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
 gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
          Length = 178

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
             +D+G  R+G A+SDP    A P   L R     +   +L   I    +    +GLP  
Sbjct: 1   MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 60

Query: 79  MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           M G + P     R +   +      + K ++     DERLTTVSA + L +  VS +   
Sbjct: 61  MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 120

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             VD +AA  ILQ  LD +   +S  G
Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQSVAG 147


>gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
 gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
          Length = 170

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
                +D+G  R+G+A+SDPG   A P   L R +K  +   +L+      ++   ++GL
Sbjct: 15  GRRLGVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGL 74

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  + G  GP   +  A+   + +R   +P    DERLTTV+A ++L    V  KK+   
Sbjct: 75  PRTLAGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAV 134

Query: 136 VDSIAAALILQEVLD 150
           VD  AA  ILQ  LD
Sbjct: 135 VDQAAAVEILQSWLD 149


>gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase
 gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 142

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID GTKR G+A SD G   A PR  +V     +   ELL+    E   A+++GLPL  
Sbjct: 4   LGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G++       R FV  +  R+  +P    +E L++  A+  L D  +S +     VD  
Sbjct: 64  DGTDTLTTRQVRNFVERL-KRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVDQQ 122

Query: 140 AAALILQEVLD 150
           AA  ILQ  L+
Sbjct: 123 AAVRILQSFLN 133


>gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii
           ATCC 12478]
          Length = 141

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 54/126 (42%)

Query: 28  RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
           RIG+A SDP    A P   + R +  +    L++          ++GLP  +    GP  
Sbjct: 2   RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61

Query: 88  HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
                    +  R    P    DERLTTVSAQ+ L    +  K++   +D  AA  ILQ 
Sbjct: 62  QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121

Query: 148 VLDRIS 153
            LD+  
Sbjct: 122 WLDQRR 127


>gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia
           mucilaginosa DY-18]
 gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia
           mucilaginosa DY-18]
          Length = 187

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
             +D+G  R+G A+SDP    A P   L R     +    L   I    +    +GLP  
Sbjct: 10  MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 69

Query: 79  MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           M G + P     R +   +      + K ++     DERLTTVSA + L +  VS +   
Sbjct: 70  MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 129

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             VD +AA  ILQ  LD +   +S  G
Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQSVAG 156


>gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
 gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
          Length = 142

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G  R G+A+SD   R A P   L   +V   A      +        + GLP  M
Sbjct: 4   LALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G EGP+    R      I R   +P  F DERL++  A++IL +  +S K+   KVD I
Sbjct: 64  AGEEGPQAARVREVAGR-ISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMI 122

Query: 140 AAALILQEVLDRISFLE 156
           +A+L LQ  LD  S  E
Sbjct: 123 SASLFLQAWLDAQSRKE 139


>gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
 gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
          Length = 153

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                  ID+G  R+G+A SDP    A P   + R   +     +L           ++G
Sbjct: 2   RTGTRLGIDVGKVRVGVARSDPHGMIATPVETVQRASSS--IKRILLLAVEFEAVELVVG 59

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP+ ++G + P     RAF   + D    +     DER+TT+SAQ  L     + K    
Sbjct: 60  LPIALSGRDTPSTADARAFAQELADGS-DITVRLVDERMTTMSAQSALRASGRTTKNSRS 118

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA +ILQ  LD
Sbjct: 119 VVDQVAAVIILQHALD 134


>gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum
           PRL2010]
 gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum
           PRL2010]
 gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 152

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP   FAHP   +       +   ++++ I  E +   ++GLPL 
Sbjct: 4   LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
           ++G+EG      R +  N+  R   +                 DERLTTVSA + L++  
Sbjct: 64  LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           +  ++    VD  +A +ILQ  LD
Sbjct: 124 LGSRRHRPVVDQQSAVVILQTALD 147


>gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
 gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
          Length = 151

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
                D GTK+IG A+       A P   +           +   I     A  ++G+  
Sbjct: 13  TYLGFDFGTKKIGTAVGQTTTATASPLQTIRSINQNPNWEIIGKLIQEWRPAGLVVGISK 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
             +GS+ P       F   + + +  +P    DE L+T  A+Q+L  +++VS  K  +  
Sbjct: 73  QADGSDNPVTPRMLKFCRQL-EGRYQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQ 131

Query: 137 DSIAAALILQEVLDRISFL 155
           D +AA LILQ  L+  + +
Sbjct: 132 DQLAAQLILQTWLNEHAHI 150


>gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 135

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 54/127 (42%)

Query: 34  SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93
            DP    A P   +  + V      L   +        ++GLP +++G EGP     R+F
Sbjct: 2   CDPDGLLATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLSGREGPAAKKIRSF 61

Query: 94  VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
              +      VP    DER+TTV+A Q L    V  KK    +D  AA +ILQ  L+   
Sbjct: 62  AQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSKKGRSVIDQAAAVVILQNALESER 121

Query: 154 FLESSKG 160
              ++ G
Sbjct: 122 ASGNAPG 128


>gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
 gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
          Length = 140

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIG+A+SDP    A P   L  ++V   A    + +        + G P 
Sbjct: 2   RVLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + G +GP+          +      +P  F DERL++  A++IL    +S K    KVD
Sbjct: 62  TLAGEDGPQAQKITVQAEQIAK-NCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKVD 120

Query: 138 SIAAALILQEVLD 150
            +AA+L LQ  LD
Sbjct: 121 MVAASLFLQSWLD 133


>gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase
 gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 161

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
            ++D+G  RIGLA SDP    A P   + R    +     +L+  T  + A  ++GLPL 
Sbjct: 7   LAVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLA 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G           F   + D    +P    DERL+TVSAQ  L       +K+   +D 
Sbjct: 67  LSGRATASTDDAEGFARRLADA-TEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125

Query: 139 IAAALILQEVLDRISFLESSKG 160
           +AA +ILQ  L+      S  G
Sbjct: 126 VAAVIILQHALETERAAGSPPG 147


>gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
           15272]
 gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
           15272]
          Length = 149

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           D+G  RIG+A+ DP    A P   +           LL   +   +   ++GLPL+++G 
Sbjct: 2   DVGDVRIGVAMCDPDGMIATPVETVPA--GPAAHARLLQIASEIEVVEIVVGLPLSLSGR 59

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
           EGP     RAFV  +       P    DERL+TV+A   L D   + +   + +D  AA 
Sbjct: 60  EGPAAGKVRAFVQVLA-AMSDRPVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQAAAV 118

Query: 143 LILQEVLDRISFLESSKG 160
           +ILQ  LD       + G
Sbjct: 119 VILQNALDAERTRGHAPG 136


>gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 162

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 1/149 (0%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           SL+    I  +D+GT R+G++  DP      P   L+R   +     L   +   +    
Sbjct: 2   SLRRGVRI-GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEV 60

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           I+GLP ++ G EG      R +   +      V     DERL++  A   L    V   +
Sbjct: 61  IVGLPRHLRGGEGVSAKGARKYARRLKTLIPSVRVALVDERLSSNQAHARLRASGVPEHE 120

Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160
               +D +AA +IL++ L+       + G
Sbjct: 121 HRSVIDQVAAQIILEQALELERMSGRAPG 149


>gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
          Length = 135

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID GTKR G+A++DP +  A     +   ++      L  +   E++ AF++G P N+
Sbjct: 1   MAIDYGTKRTGIAVTDPLQIIASGLDTVPTTELMNF---LRQYCQEEDVEAFVVGEPKNL 57

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
           + +     H   AFV  + +       +  DER T+  A + +     SRKKR  K  VD
Sbjct: 58  DDTPAQIHHLVMAFVAQIENLFPDKRVILRDERFTSKDATRSIRQSVPSRKKRRDKGLVD 117

Query: 138 SIAAALILQEVLDRISF 154
            ++A +ILQE L++  +
Sbjct: 118 KVSAVIILQEYLEKYKY 134


>gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139]
 gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139]
          Length = 147

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +      +    L   +        I+GLP+ +
Sbjct: 3   LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L +   + +K+   +D  
Sbjct: 61  NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120

Query: 140 AAALILQEVLDRISF--LESSKG 160
           AA  IL+ VL+++    LE++ G
Sbjct: 121 AAVAILEHVLEQVRLGQLETATG 143


>gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
           12066]
 gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
           12066]
          Length = 140

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D G   IG+A+ +     A P   +  +     A ++ +       +  ++G P+
Sbjct: 2   SVLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKV 136
           NM+G++       R F + + D+   +   F DERLTT  A ++I             K+
Sbjct: 62  NMDGTKEELTFKARKFGNRLADK-FKLKVYFKDERLTTADAKERIFSQYGYKGLASKGKI 120

Query: 137 DSIAAALILQEVLDRIS 153
           D ++AALIL+   +  +
Sbjct: 121 DCVSAALILEAFFEEKA 137


>gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis
           SK2]
 gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase
 gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax
           borkumensis SK2]
          Length = 133

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT++IG+A  +     A P   L  K       ++ + +      A ++GLPLN
Sbjct: 2   ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+GS+       R F + +  R         DERL+T  A++         KK   +VDS
Sbjct: 62  MDGSDSESTVRARKFANRLHGR-FGKKVWLIDERLSTREARER-----TGIKKADSRVDS 115

Query: 139 IAAALILQEVL 149
           +AA +I +   
Sbjct: 116 MAAVIIAEGFF 126


>gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
 gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
          Length = 138

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G  R+G+A+SDPG R A P   L   +V   A      +        + GLP 
Sbjct: 2   RIMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            M G+EGP+    R     + D    +P+ F DERL++  A++ L +  ++ K    K+D
Sbjct: 62  TMAGAEGPQAARIRKVAKTISDA-CGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKID 120

Query: 138 SIAAALILQEVLD 150
            IAA+L LQ  LD
Sbjct: 121 MIAASLFLQAWLD 133


>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
 gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
          Length = 167

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
                   ID+G  R+G+A+SDP    A P   + R    +         L+   T   +
Sbjct: 14  PGRGRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEV 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNV 127
              ++G+PL ++GS G            +  R    V   + DER+TTV AQ  L    +
Sbjct: 74  VEIVVGMPLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYADERMTTVMAQSRLHAAGI 133

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
             K   + +D  AA  ILQ  LDR +
Sbjct: 134 DVKSGRKIIDQAAAVEILQSWLDRRA 159


>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
           5692]
 gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
           5692]
          Length = 142

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               ID G KR+GLA+SD       P   + R        ELL++I T  I A +IGLP 
Sbjct: 2   RYLGIDFGLKRVGLALSDSQATVVTPLATVQRSTRQALFEELLAYIETYAIEAVVIGLPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           ++ G+        R F  ++  R++ +P  + DE LT+  A + L +  V R KR   +D
Sbjct: 62  DLEGTATLTTRQARNFGTSLA-RRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLD 120

Query: 138 SIAAALILQEVL 149
             AA  IL+  L
Sbjct: 121 QHAAVAILESFL 132


>gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
           20707]
          Length = 141

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR GLA++DP +        +      Q    L  ++  E +   ++G 
Sbjct: 1   MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIVLGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P  M+ +      + +A    +      +   + DER T+V AQQ + +  + +++R   
Sbjct: 58  PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117

Query: 133 IQKVDSIAAALILQEVLDRISFLE 156
              VD ++A +ILQ  L+ +S L 
Sbjct: 118 KGLVDRVSATIILQSYLESLSMLH 141


>gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase
 gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 156

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I +  + +   + I  +D G K+IG+A+SD     A P    VRK   +    L 
Sbjct: 1   MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLY 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +   +  + +IGLPL++ G           F + MI +   +     DER +T  A +
Sbjct: 61  GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKK-YAINIYLHDERYSTAMATR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           +    N+ RK+  +  D IAA LILQ+VLD +   +
Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155


>gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
 gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase
 gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 142

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID GTK  G+A+SD    FA P+  ++     +  ++L+  I  E+  A ++GLP+  
Sbjct: 4   VAIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLF 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       R F+  +  + + +P     E L++  A+  L  +   + K    +D  
Sbjct: 64  DNSETLITRQVRNFIKRLKHKIM-LPVFLMKEILSSYEAKLDLQSVGYRKNKIKSVLDQQ 122

Query: 140 AAALILQEVLDR 151
           AA  ILQ  LD+
Sbjct: 123 AAVRILQSFLDQ 134


>gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S]
 gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
           33707]
 gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S]
 gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
           33707]
          Length = 150

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 28  RIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIAAFIIGLPLNMNGSE 83
           RIG+A  DP    A P   + R K           +++ +        I+GLP  + G  
Sbjct: 2   RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
           G       AF   +      VP    DERLTTV+A + L +  V  K +   +D  AA  
Sbjct: 62  GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121

Query: 144 ILQEVLDRIS 153
           ILQ  LD  S
Sbjct: 122 ILQGWLDERS 131


>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 140

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID G KR+GLA+SD   +   P   + R       LELL+ I    I A ++GLPL  
Sbjct: 4   LGIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGP 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G +         F+ ++ DR+  +P    +E  T++ A+ IL    +  +K+ + +D  
Sbjct: 64  DGEKSLTCRQAENFMQSL-DRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLDQA 122

Query: 140 AAALILQEVLDRISFLE 156
           AA +IL+  L  I   E
Sbjct: 123 AAVIILESFLAGIPLRE 139


>gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
           20098]
 gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
           20098]
          Length = 154

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 13/152 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLP 76
               IDLG  R+GLA+SDP   FAHP   + V     +   +++  I  EN+   ++GLP
Sbjct: 2   TWLGIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILID 124
           L ++G EG      R +  N+  R              VP     DERLTTVSA + L  
Sbjct: 62  LLLSGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLRQ 121

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            N++ +     VD  +A +ILQ  LD+ +  E
Sbjct: 122 ANIAERGHRPVVDQQSAVVILQAALDKRNSRE 153


>gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 135

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID GTKR G+A++D  +  A     +   + T+    L  +   E +   I+GLP 
Sbjct: 2   RILAIDYGTKRCGIAVTDELKLIASALATV---ETTELLDFLEKYCQAEQVERIIVGLPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
            ++G       +   F+  + ++   +P   +DER T+  A  IL+     +KKR     
Sbjct: 59  QVSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKAL 118

Query: 136 VDSIAAALILQEVLDRI 152
           +D I+A LILQ+ L  +
Sbjct: 119 LDRISATLILQDYLSSL 135


>gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa
           NIES-843]
 gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase
 gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa
           NIES-843]
          Length = 145

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G KR+G+A  D     A     ++R        +  + +   NI   + GLP  M
Sbjct: 7   LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G  G +    + +   +    + +P  + DER T++ A++ L             +D  
Sbjct: 67  AGELGFQAQQVQKYAQKLA-IALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125

Query: 140 AAALILQEVLDRIS 153
           AAA+ILQ+ LDR  
Sbjct: 126 AAAIILQQWLDRRR 139


>gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D]
 gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D]
          Length = 143

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  +  + + D G KRIG+A+ +   R A     +  + V     ++   +       F+
Sbjct: 12  MPADGTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFV 71

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G+P++ +G E P +   + F + +  R   +P  + DER ++++AQ    D   S    
Sbjct: 72  VGMPVHPDGEEQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAS---- 122

Query: 133 IQKVDSIAAALILQEVLDR 151
              +D+ AA +ILQ+  D 
Sbjct: 123 DDVLDAEAARIILQQFFDE 141


>gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
          Length = 136

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR G+A++D  +  A     +  K +      L  +++ E + A +IG 
Sbjct: 1   MARIIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTF---LKKYLSEEKVEAMVIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN            F  ++  +   +  +  DER T+  A Q ++D  + +KKR  K
Sbjct: 58  PKRMNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNK 117

Query: 136 --VDSIAAALILQEVL 149
             VD I+A +ILQ+ L
Sbjct: 118 ALVDQISATIILQDYL 133


>gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
 gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
          Length = 136

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + +ID G  R G+A++D  +  A     +  K++      L  +I  E +   I+G 
Sbjct: 1   MGRLLAIDFGKVRTGIAVTDELQIIASGLTTVATKELITF---LKDYIAKEKVDKIIVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN +          F+  +      +     DER T+  A + +ID  +++KKR  K
Sbjct: 58  PKQMNNTASESEVLIVPFLEKLTAVFPNMIIEREDERFTSKMAFKTMIDSGLNKKKRKNK 117

Query: 136 --VDSIAAALILQEVLDR 151
             VD I+A +ILQ  L R
Sbjct: 118 ALVDEISATIILQSYLSR 135


>gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
 gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
          Length = 153

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 66/135 (48%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  +  +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GL
Sbjct: 3   SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  +NG EG      R++   +  +   +P    DERL++V+A + L    VS ++  + 
Sbjct: 63  PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122

Query: 136 VDSIAAALILQEVLD 150
           VD +AA  IL++ L+
Sbjct: 123 VDQVAAQQILEQALE 137


>gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
 gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
          Length = 137

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID G KR G+A++DP +  A     +   ++T     L  +  +E + AF++G+P 
Sbjct: 3   RLLAIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDF---LKKYTLSEQVEAFVVGMPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            ++ ++        AFV ++      +     DER T+  A Q +I     +  R  K  
Sbjct: 60  KLDNTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGN 119

Query: 136 VDSIAAALILQEVLDRIS 153
           +D ++A +ILQ  ++   
Sbjct: 120 IDKVSATIILQSFMESRR 137


>gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
 gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
          Length = 152

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 69/141 (48%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID+G  RIG+A S  G   A P   L  +       ELL+ IT  N AA  +GLP  M
Sbjct: 7   LAIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLPKLM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG      R++   ++ R   +P    DERL++  A   L  + V  +++ + VD +
Sbjct: 67  SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMVDQL 126

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA  IL   L+ ++   +  G
Sbjct: 127 AAVTILTRALETLTQTGNLPG 147


>gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
 gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
          Length = 199

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
             +D+GT R+G+A+ D     A P   L R     T + +L+   +        +GLP  
Sbjct: 16  LGVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFVGLPRT 75

Query: 79  MNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           + G E         +   + +    R   +P    DERL+TV+A + L +  +S +   +
Sbjct: 76  LKGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSSRNHRK 135

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            VD +AAA ILQ  +D    ++ ++G
Sbjct: 136 VVDQVAAAGILQHAID----MQKARG 157


>gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR5-3]
 gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR5-3]
          Length = 142

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D G  +IG+A+ +       P   L  +       E+            ++G PL
Sbjct: 9   RVLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPL 68

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+        R F   + + ++ +     DERL++   +Q   +       R   VD
Sbjct: 69  NMDGTVSEFAQRARKFARRL-EGRLGLSVEMVDERLSSFEVKQQQKEAGHRGDYREHPVD 127

Query: 138 SIAAALILQEVL 149
            +AA LIL++ L
Sbjct: 128 DLAAELILRDWL 139


>gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35239]
 gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35239]
          Length = 153

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 66/135 (48%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  +  +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GL
Sbjct: 3   SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  +NG EG      R++   +  +   +P    DERL++V+A + L    VS ++  + 
Sbjct: 63  PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122

Query: 136 VDSIAAALILQEVLD 150
           VD +AA  IL++ L+
Sbjct: 123 VDQVAAQQILEQALE 137


>gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
           13965]
 gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
           13965]
          Length = 330

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +DLG++ IG+AISDP    A P   L R+   +    ++           ++G P 
Sbjct: 2   RWLGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++G  GP   +  AF   +    V      WDERL+TV A+++LID ++SR++R   +D
Sbjct: 62  RLDGRRGPEAEAAEAFAAGLQAAGVSR-VTLWDERLSTVQAERVLIDADLSRRRRKAIID 120

Query: 138 SIAAALILQEVLDRISFLESSKG 160
            +AA +ILQ  L+      ++ G
Sbjct: 121 RMAATVILQAFLEAQRRQRATGG 143


>gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 147

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P Q I + D GT+++G+AI       A+P P    K       +LL  +       FI
Sbjct: 4   LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFI 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+ SE       R F   +  +   +     DERLTT  A++ L       + +
Sbjct: 64  VGLPLNMDDSESELSARARKFARRLRHQ-TNISTWMVDERLTTREAREELEFYQSKGQAK 122

Query: 133 IQKVDSIAAALILQEV 148
               DS AAAL++Q  
Sbjct: 123 RLSADSFAAALLIQSW 138


>gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase
 gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 182

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-----TQTALELLSFITTENIA 69
           P +    +D+GT RIG+A+SD   R A P   + R+             LL  I   +  
Sbjct: 15  PGRR-LGLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDAV 73

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-------YVPFVFWDERLTTVSAQQIL 122
              +GLP ++ G+    V   +     +  R           P    DERLTTV A   L
Sbjct: 74  EVAVGLPRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSAL 133

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
               VS K+    +D  AA  ILQ  LD   F
Sbjct: 134 RASGVSEKRGRSVIDQAAAVEILQSWLDARHF 165


>gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
           44963]
 gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
           44963]
          Length = 162

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 16/150 (10%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
              + ++D+G  RIG+A  D     A P   + V +   QT   +   I   +    +IG
Sbjct: 3   MGRLLALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIG 62

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++++G    +     AFV  +    + VP  FWDERL+TV A+++       + K   
Sbjct: 63  LPVSLDGQIHAQGERIMAFVERL-KAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTG 121

Query: 135 --------------KVDSIAAALILQEVLD 150
                         ++D++AAA+ LQE LD
Sbjct: 122 GRQHSQGKRRRPGHEIDALAAAVFLQEYLD 151


>gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase
 gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 155

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 1/141 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID+GT RIG++ SD     A P   + R         +   +T   +   I+GLPL +
Sbjct: 7   LGIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLAL 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G          AF   ++   V  P    DERL+TVSA   L     + K     VD  
Sbjct: 67  SGVHTASTADAVAFAEALVVE-VGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQA 125

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA +ILQ  LD         G
Sbjct: 126 AATIILQHALDAERATSRPPG 146


>gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 143

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P   I +ID GTKR GLA++D  +        +      Q    L  ++  E +   ++G
Sbjct: 2   PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTH---QLLNYLADYLGREEVETIVLG 58

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV---SRKK 131
            P  M+ +      + +A    +      +   + DER T+V AQQ + +  +    R++
Sbjct: 59  KPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRRQ 118

Query: 132 RIQKVDSIAAALILQEVLDRISFLE 156
               VD ++A +ILQ  L+ +  L 
Sbjct: 119 DKGLVDRVSATIILQSYLESLRMLH 143


>gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia
           thailandensis MSMB43]
          Length = 146

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +L  +  + + D G KRIG+AI +   R A     +           +   I     
Sbjct: 1   MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            A ++GLPL+ +G+        + F + + + +  +P  + DER ++V           +
Sbjct: 61  DALVVGLPLHPDGAPHEMTQRAKRFGNQL-NGRFNLPVSWVDERYSSVE----ARAGLRA 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
           R     +VD+ AA +ILQ+ LD +     
Sbjct: 116 RGAAADRVDAEAARVILQQYLDGLPDHHE 144


>gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
           HTCC2559]
          Length = 135

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G+A++D  +  A     +    +      L  +   E +   +IG 
Sbjct: 1   MARILAIDYGAKRTGIAVTDELKLIASGLTTVRTHDLESF---LKDYFEKEKVELVLIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  ++G+          F++        + F   DER T+  A Q +ID  + +K+R  K
Sbjct: 58  PKQVDGTHSENEERIIHFINRFKKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNK 117

Query: 136 --VDSIAAALILQEVL 149
             VD I+A +ILQ  L
Sbjct: 118 ALVDEISATIILQTYL 133


>gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
 gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
          Length = 145

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D GT+R+GLA++DP R  A P      +   Q    L +    E I   +IG PL
Sbjct: 4   RVVAVDYGTRRVGLALADPLRVIAQPYGTYAPEAALQVLQRLHA---EEGIETLVIGWPL 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
              G+EG        F+  +      V  V WDER T+  A++ L ++   RKKR    +
Sbjct: 61  TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120

Query: 136 VDSIAAALILQEVLDR 151
           +D +AA +ILQE L++
Sbjct: 121 IDQMAAVIILQEYLEQ 136


>gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS]
 gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase
 gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 142

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           S   ++ I  ID GTKRIG+A+SDP R FA P      + + +    +      E I   
Sbjct: 2   SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRD---DEGIELV 58

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G P++  G E         FV  + +         +DE  ++ +A +IL     SRKK
Sbjct: 59  VVGYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKK 118

Query: 132 R--IQKVDSIAAALILQEVLDRIS 153
           R    ++D+ AA LILQ  LD  S
Sbjct: 119 RNEKGRLDTAAACLILQGYLDSHS 142


>gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 156

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+GT R+G+A +DP    + P   L R        EL + +   +    ++GLP ++
Sbjct: 3   IGVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHL 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G EG      R +   +      V     DERL++  A Q L    V        +D +
Sbjct: 63  KGGEGVSAKGARRYARRVKVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVIDQV 122

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA +I++  LD       + G
Sbjct: 123 AAQIIIEHALDTERISGRAPG 143


>gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
 gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
          Length = 147

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P Q I + D GT+++G+AI       A+P P    K       +LL  +       FI
Sbjct: 4   LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFI 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+ SE       R F   +  +   +     DERLTT  A++ L       + +
Sbjct: 64  VGLPLNMDDSESELSARARKFARRLRHQ-TNITTWMVDERLTTREAREELEFYQSKGQAK 122

Query: 133 IQKVDSIAAALILQEV 148
               DS AAAL++Q  
Sbjct: 123 RLSADSFAAALLIQSW 138


>gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase
 gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 155

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     ++ +KS+  ++ I  +D+G K+IG+A SD  +  A       RK +++    L 
Sbjct: 1   MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                    + +IGLPL M+  E     +   F + +I +   V     DE  +T  A  
Sbjct: 61  RIFKENESGSMVIGLPLKMDEQETKWCKTIIQFANKIIKK-YKVNIYLQDESFSTSIATH 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            L    +S  K  +  D I+A +ILQ  LD+I+ ++
Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155


>gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase
 gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold,
           yqgF family [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 155

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M      + +KS+  ++ I  +D+G K+IG+A SD  +  A       RK +++    L 
Sbjct: 1   MLYRDPYEFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLN 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                    + +IGLPL ++G +     +   F + MI +   V     DE L+T  A  
Sbjct: 61  RIFKKNEAGSIVIGLPLEIDGQKSEWCKTIIKFANKMIKK-YKVSTYLQDESLSTSIAAH 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            L    VS  K  +  D I+A +ILQ  LD+I+ ++
Sbjct: 120 TLKISGVSTTKSKRIDDKISACIILQRTLDKINVIK 155


>gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Gardel]
 gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase
 gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
           Gardel]
          Length = 156

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I +  + +   + I  +D G K+IG+A+SD     A P    VRK   +    L 
Sbjct: 1   MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLY 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +   +  + +IGLPL++ G           F + MI +   +     DER +T  A +
Sbjct: 61  GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKK-YAINIYLHDERYSTAMATR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           +    N+ RK+  +  D IAA LILQ+VLD +   +
Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155


>gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
 gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
          Length = 207

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
           P      +D+GT R+G+AI D     A P   L R     + + L++ +  E      I+
Sbjct: 20  PQGVKLGVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIV 79

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129
           G+P  M G E         +   +          VP    DERL++VSA + L +  +S 
Sbjct: 80  GMPRTMKGEEHASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSS 139

Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +   + VD +AAA ILQ  +D      +  G
Sbjct: 140 RNHRKVVDQVAAAGILQHAIDMQKARGADVG 170


>gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
 gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
          Length = 171

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
              ++D+G  RIG+AISDP  R A P   L   +V   A      +      A + GLP 
Sbjct: 20  RYMALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPF 79

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + G +GP+  S +     +      +P  F DERL++  A++ L +     +    KVD
Sbjct: 80  TLAGEQGPQAASLKERAQRIAKA-CDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVD 138

Query: 138 SIAAALILQEVLDR 151
            IAA++ LQ  LD 
Sbjct: 139 MIAASIFLQSWLDS 152


>gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
           15176]
 gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
           15176]
          Length = 156

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
            ++D G  R GLA  D       P    +  K + + A  +            + GLP N
Sbjct: 4   LAVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGLPKN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+EG R   +R F   + +     P V WDER TTVSA  IL D +   +KR  ++DS
Sbjct: 64  MDGTEGSRAAKSRRFAQRLAN-TAGRPVVLWDERRTTVSATAILADNDTFGQKRKARLDS 122

Query: 139 IAAALILQEVLD 150
           ++AA+IL+  L+
Sbjct: 123 VSAAVILESFLN 134


>gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505]
 gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505]
          Length = 171

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
            +P   I + D+G  RIG+A  D     + P   L R +      E +  +        I
Sbjct: 13  FRPGVRI-AFDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVI 71

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +GLP +M G         R +  ++  R    V     DERLTTVSA + L    +  + 
Sbjct: 72  VGLPKHMGGGSSSSTRDARQWARDLASRLPQRVCVRLVDERLTTVSAHRDLHAAGLKERS 131

Query: 132 RIQKVDSIAAALILQEVL--DRISFLESSK 159
               VD  AA +IL++ +  +R+S + + +
Sbjct: 132 FRGIVDQAAAVVILEQAITTERMSGVPAGE 161


>gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
           14600]
 gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
           14600]
          Length = 147

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
           I ++D G K +G+A +D     A     + RK   K+ +T   +        I   ++GL
Sbjct: 10  IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+NM+ SEG R    R F   +  R   +    +DERL+T+ A +IL    V   KR + 
Sbjct: 70  PVNMDDSEGERAGMARDFADQVAQR-TGIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128

Query: 136 VDSIAAALILQEVLDRIS 153
           +D ++A LIL+  L+ + 
Sbjct: 129 LDELSAQLILERYLEDLR 146


>gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 183

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
                   +D+GT RIGLA+SD G R A P   L R+        Q    +   I   +I
Sbjct: 25  PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 84

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILI 123
              ++GLP ++ G+    V   +     +  R       +V     DERLTTV A Q L 
Sbjct: 85  VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 144

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
              VS KK  + VD  AA  ILQ  LD RI+ LE+
Sbjct: 145 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLEN 179


>gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
 gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
          Length = 152

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
             +D+G  RIG++ SDP    A P   + R+       V +  +E+ + +        ++
Sbjct: 10  LGVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALVVEHEAVEVVV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+N+ G  GP     +A+   + +    VP    DER++TV A + L +  V  KK+ 
Sbjct: 70  GLPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLAERGVRGKKQR 129

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA  ILQ  LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146


>gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium accolens ATCC 49726]
 gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium accolens ATCC 49726]
          Length = 183

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
                  ++D+GT RIG+A S+     A P   + RK     +  +    +L  I   + 
Sbjct: 14  PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSA 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
              I+GLP +++G+    V   +     +  R        KV  P    DERLTTV+A  
Sbjct: 74  VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 133

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
            L    VS KK  + +D  AA  ILQ  LD R + L S
Sbjct: 134 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRS 171


>gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
 gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
 gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
 gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
          Length = 138

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G  R+G+A+SDPG R A P   L   +V   A      +        + GLP 
Sbjct: 2   RIMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            M G+EGP+    R      I     +P+ F DERL++  A++ L +  ++ K    K+D
Sbjct: 62  TMAGAEGPQAARIRK-AAKTISDACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKID 120

Query: 138 SIAAALILQEVLD 150
            IAA+L LQ  LD
Sbjct: 121 MIAASLFLQAWLD 133


>gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
 gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
          Length = 142

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           SL   + I +ID GTKRIG A SDP + FA P   + R    +   +L      E I   
Sbjct: 2   SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRA---ELFEKLEQMARNEEIDKI 58

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK- 130
           ++G PLN +G++         F+  +      +P    DE  ++  A QIL    +SRK 
Sbjct: 59  LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118

Query: 131 -KRIQKVDSIAAALILQEVLD 150
             R  ++D  AA +IL+E LD
Sbjct: 119 RNRKGRLDCAAACVILREYLD 139


>gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
 gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
 gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
          Length = 137

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
            + I ++DLG+K  G AISD  R  + P      K  K+     +L  +     I   +I
Sbjct: 1   MKRIIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLI 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G PL+M  ++         FV N+      +P    DER TT  A  I+I+  +SR+KR 
Sbjct: 61  GYPLSMQLNQTKSSKRVDYFV-NLFKTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRK 119

Query: 134 QKVDSIAAALILQEVLDR 151
           +  D +AA LIL + L++
Sbjct: 120 KNKDKLAAQLILDDYLNQ 137


>gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
 gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase
 gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase
 gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
 gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
          Length = 142

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID G +R G+A++D G R A PR  +         +ELL  +  E   AF++GLP   
Sbjct: 4   LGIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLP 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G E       R FV  +  R+  +P  F  E L++  A+  L D  +  ++    VD  
Sbjct: 64  GGEETLTTRQVRNFVERL-KRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVDQQ 122

Query: 140 AAALILQEVL 149
           AA  IL+  L
Sbjct: 123 AAVRILESFL 132


>gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp.
           JA-3-3Ab]
 gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase
 gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
           JA-3-3Ab]
          Length = 159

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 1/140 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G +RIG+A SD     A     + R+ + +   ++ ++I        ++G+PL  
Sbjct: 17  LGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLA 76

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +    + FV  +    V +P V  +E L+TV A+  L    +  K +   +D  
Sbjct: 77  DGSVGSQARKVQRFVRAL-QAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQ 135

Query: 140 AAALILQEVLDRISFLESSK 159
           +AA+ILQ  LD   + +SSK
Sbjct: 136 SAAVILQTWLDERRYSQSSK 155


>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 142

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 75/134 (55%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  +D+G ++IG+A+SD     A P+  +  K + +   ++L  I   +I   ++GL
Sbjct: 1   MERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P ++NG +G +   T++FV  +  +   +  ++ DER T+  A + L  M++ + K  + 
Sbjct: 61  PKDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKEL 120

Query: 136 VDSIAAALILQEVL 149
           +DS+AAA IL+  L
Sbjct: 121 IDSLAAASILETYL 134


>gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 141

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR GLA++DP +        +      Q    L  ++  E +   I+G 
Sbjct: 1   MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIILGK 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
           P  M+ +      + +A    +      +   + DER T+V AQQ + +  + +++R   
Sbjct: 58  PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117

Query: 133 IQKVDSIAAALILQEVLDRISFLE 156
              VD ++A +ILQ  L+ +S L 
Sbjct: 118 KGLVDRVSATIILQSYLESLSMLH 141


>gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232]
 gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase
 gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase
 gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase
 gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232]
 gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 143

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGL 75
            I ++DLG K  G AISD   + ++P       R         +  ++    I+  ++G 
Sbjct: 6   RILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGY 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL + G   PR      F  +++ +   +  VF DERLTT  AQ  L+D+ +S KKR + 
Sbjct: 66  PLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKV 124

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +IL+  L+
Sbjct: 125 IDKLAAQIILERFLN 139


>gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
 gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
          Length = 136

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA++DP +  A     +    +      L  ++  E +  F+IG 
Sbjct: 1   MARILAIDYGKKRTGLAVTDPLQLIASGLTTVATHDLIPY---LKKYLAQEAVELFLIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P N++G            +  +      VP    DER T+  A Q +ID  + +K R   
Sbjct: 58  PKNLDGGATHATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKKDRQNK 117

Query: 134 QKVDSIAAALILQEVL 149
             VD I+A +ILQE L
Sbjct: 118 GLVDEISATIILQEYL 133


>gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
           13280]
 gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
           13280]
          Length = 142

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G  R G+A+SD   R A P   L   +V   A      +        + GLP  M
Sbjct: 4   LALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EGP+    R     +      +P  F DERLT+  A++IL +  ++ K+   KVD I
Sbjct: 64  SGEEGPQAEHIREVAGRIA-AATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMI 122

Query: 140 AAALILQEVLDR 151
           +A+L LQ  LD 
Sbjct: 123 SASLFLQAWLDS 134


>gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 142

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 66/138 (47%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++P     +ID+G+ R+G+A+ DP    A P   + R K       ++  IT  +    +
Sbjct: 2   IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IGLP  + G EGP V + R F   +      V   F+DERLTTV+A   L    V  K  
Sbjct: 62  IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121

Query: 133 IQKVDSIAAALILQEVLD 150
              +D  AA  ILQ  LD
Sbjct: 122 RAVIDQAAAVAILQGWLD 139


>gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC
           43063]
 gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC
           43063]
 gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 152

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 68/141 (48%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID+G  RIG+A S  G   A P   L  +       ELL+ IT  N AA  +GLP  M
Sbjct: 7   LAIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLPKLM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG      R++   ++ R   +P    DERL++  A   L    V  +++ + VD +
Sbjct: 67  SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQL 126

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA  IL   L+ ++   +  G
Sbjct: 127 AAVTILTRALETLTQTGNLPG 147


>gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda
           SM-A87]
 gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda
           SM-A87]
          Length = 134

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + ++D G KR G+A++D  +  A     +    +      L  +   E +   ++G 
Sbjct: 1   MARVMALDYGVKRTGIAVTDELQMIASGLTTVDTSSLLNF---LEDYFKKEKVETVVVGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   + S          F+    ++   +  V  DER T+  A Q +ID  + +KKR  K
Sbjct: 58  PKQKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNK 117

Query: 136 --VDSIAAALILQEVL 149
             VD ++A +ILQ  L
Sbjct: 118 ALVDEVSATIILQSYL 133


>gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium accolens ATCC 49725]
 gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium accolens ATCC 49725]
          Length = 173

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
                  ++D+GT RIG+A S+     A P   + RK     +  +    +L  I     
Sbjct: 4   PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTA 63

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
              I+GLP +++G+    V   +     +  R        KV  P    DERLTTV+A  
Sbjct: 64  VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 123

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
            L    VS KK  + +D  AA  ILQ  LD R + L S
Sbjct: 124 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRS 161


>gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
           A2-165]
 gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
           A2-165]
          Length = 143

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
            I ++D G  R GLA+ DP      P    +  K   + A E+      +     ++GLP
Sbjct: 2   KILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+EG R   +R     +      +P   WDER +T  A  IL ++      R   +
Sbjct: 62  LNMDGTEGERAEKSRKLGKTL-QIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAIL 120

Query: 137 DSIAAALILQEVL 149
           DS++A +IL++ L
Sbjct: 121 DSVSATVILEDYL 133


>gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705]
 gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705]
 gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 145

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           G  R+GLA+SDP   FAHP   +           E+L+ I  E++   I+GLPL M+G+E
Sbjct: 2   GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61

Query: 84  GPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMNVSRKK 131
           G      R +  N+  R           +  +P     DERLTTVSA + L + + +  K
Sbjct: 62  GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
               VD  +A +ILQ  LDR  
Sbjct: 122 HRPVVDQQSAVVILQTALDRTR 143


>gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 134

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D GTKR G+A++D  +  A     +      +    L  +   EN+   ++G 
Sbjct: 1   MGRILALDFGTKRTGIAVTDELQLIASGLTTV---NTKELLDFLKKYFAEENVELILLGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  MN            F  ++ ++   +P    DER T+  A Q ++D  + +K+R  K
Sbjct: 58  PKRMNNEASHVEAEILKFRESL-EKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKNK 116

Query: 136 --VDSIAAALILQEVL 149
             +D I+A +ILQ  L
Sbjct: 117 ALLDEISATIILQTYL 132


>gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
           17982]
          Length = 162

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 57/141 (40%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+GT R+G++  DP      P   L R         L   + + +    I+GLP ++
Sbjct: 9   IGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHL 68

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G EG      R +   +      V     DER+T+  A   L    +   +    +D +
Sbjct: 69  RGGEGISAKGARKYARRLKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVIDQV 128

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA +IL++ L+       + G
Sbjct: 129 AAQIILEQALELERMGGRAPG 149


>gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 144

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           G  R+GLA+SDP   FAHP   +           E+L+ I  E++   I+GLPL M+G+E
Sbjct: 2   GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61

Query: 84  GPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMNVSRKK 131
           G      R +  N+  R           +  +P     DERLTTVSA + L + + +  K
Sbjct: 62  GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
               VD  +A +ILQ  LDR  
Sbjct: 122 HRPVVDQQSAVVILQTALDRTR 143


>gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 175

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 19/155 (12%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
             +     +D+GT RIG+A+SD   R A P   + R+            +LL+ I+   I
Sbjct: 14  PGSGRRLGLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAI 73

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-------------VFWDERLTT 115
              ++GLP ++ G+    V   +     +  R++  PF                DERLTT
Sbjct: 74  VEIVVGLPRDLQGNGSASVKHAKEIAFRL-KRRLNKPFAPDPTPPHPVPVVRMGDERLTT 132

Query: 116 VSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           V+A   L    VS KK    +D  AA  ILQ  LD
Sbjct: 133 VAATTALRASGVSEKKGRAVIDQAAAVEILQSWLD 167


>gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase
 gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 151

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +DLG K +G+A+S      A     +     K  Q    L   I+   I   I+G P 
Sbjct: 10  LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILGYPK 68

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MN   G +   +  F   + ++   V  + WDERL+TV A QIL   N  + K +Q  D
Sbjct: 69  HMNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQMKD 128

Query: 138 SIAAALILQEVLDRISFLESSK 159
            IAA++ILQ  LD I    + +
Sbjct: 129 EIAASIILQNYLDYIKLHPNKE 150


>gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
 gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
          Length = 136

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G  RIG+A+SD     A P   L R+   +    +      E     ++GLPL+ 
Sbjct: 1   MALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLH- 59

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           N   GP      +    +  R++ +P  F +E  TT+ A + +++ ++SRK+R + VD +
Sbjct: 60  NDQIGPEAQRVISLGRRL-QRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDKV 118

Query: 140 AAALILQEVLDRIS 153
           AAALIL+  LD + 
Sbjct: 119 AAALILRRWLDGMR 132


>gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
 gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
          Length = 152

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 3/137 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D+G++R+G+A+SD  RR A     L R+   Q    +  +I    +   ++G+
Sbjct: 1   MGRILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGI 60

Query: 76  PLN-MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
           PL+  +GS  P+     A    + +R   VP +  DER +T  +   LI   ++SRKKR 
Sbjct: 61  PLDSRDGSFTPKAMEIGAEARQLQER-FAVPVIGVDERFSTSKSNDFLIGVADLSRKKRK 119

Query: 134 QKVDSIAAALILQEVLD 150
           + VD++AA  ILQ  LD
Sbjct: 120 KVVDTMAAQNILQGYLD 136


>gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
 gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
          Length = 131

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +   D G KRIG+A+ +   + A P   +           +   +     A  I+GL
Sbjct: 1   METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P + +G E       R F + +  R   V  V  DER ++           V   +R + 
Sbjct: 61  PRHPDGEEHEMTVRCRRFANQLHGR-FNVATVLVDERYSSA----------VISHQRGEL 109

Query: 136 VDSIAAALILQEVLDRISFLES 157
           +D  AAA+ILQ+  D  +  ES
Sbjct: 110 IDDQAAAIILQQYFDDYTQSES 131


>gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 161

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 9/139 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D G  RIG+A SDP    A P   + R K       +   +        ++G P ++
Sbjct: 7   LAVDPGNARIGVAASDPSGMLASPVETIRRGKG--DTQRIALLVLERQAREVVVGYPASL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-------R 132
           +G EGP   S R F   +      VP    DERLTTV+AQ  L+       K       R
Sbjct: 65  SGEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAKGGRAR 124

Query: 133 IQKVDSIAAALILQEVLDR 151
              +D  AA ++LQ  LD+
Sbjct: 125 RSVIDQAAATVLLQSALDQ 143


>gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396]
 gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase
 gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Hahella chejuensis KCTC 2396]
          Length = 158

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              +   D G KR G A+       A P   +  +        + + +     A  I+G 
Sbjct: 1   MATVVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGE 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+GS        R F   +  R   +     DERLT+  A+ ++ +    R      
Sbjct: 61  PLNMDGSVSEMALRARKFARRLHGR-YNLRVEMADERLTSSEAKSMVRERYGQRDFGRFA 119

Query: 136 VDSIAAALILQEVLD 150
           VDSIAA  I++  L+
Sbjct: 120 VDSIAAVFIVESWLE 134


>gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
           51599]
 gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
           51599]
          Length = 156

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           L  +    Q + + D G KRIG+A+ +     A P   L  +        + + +     
Sbjct: 3   LSAATSTVQTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQP 62

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-- 126
              ++G PL+ +G+          F   + + +  +P    DER ++V+AQ+ + D +  
Sbjct: 63  TGLVVGRPLHPDGTPHEVTALAERFARRL-EGRFGLPVFLVDERYSSVAAQERMRDEDDE 121

Query: 127 -------VSRKKRIQKVDSIAAALILQEVL 149
                    +    Q  D+ AAA+IL++ L
Sbjct: 122 HVTRGGRRRKGGASQGDDATAAAIILEQYL 151


>gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
          Length = 151

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +DLG K +G+A+S      A     +     K  +    L   I+   I   ++G P 
Sbjct: 10  LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLGYPK 68

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MN   G +   +  F   + ++   V  + WDERL+TV A Q+L   N  + K +Q  D
Sbjct: 69  HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKD 128

Query: 138 SIAAALILQEVLDRISFLESSK 159
            IAA +ILQ  LD I    + +
Sbjct: 129 EIAATIILQNYLDYIKLHPNKE 150


>gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
 gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
          Length = 142

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
              D G   IG+A        A     +  +       ++   +       F++G+P NM
Sbjct: 6   LGFDWGLGWIGVASGQTETYTASKLKPIRARDGIPNWTDIDQLVQEWRPTGFVVGIPYNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GSE   V   R F    +  +  +P    DERLTT  A Q +   +  +K +   +DS+
Sbjct: 66  DGSESQMVVRARKF-RKRLHGRFGLPAEEADERLTTREAWQHMNPASSLKKAKADDLDSV 124

Query: 140 AAALILQEVLDRIS 153
           AA +ILQ  L++  
Sbjct: 125 AAQIILQSWLEQRR 138


>gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM
           4136]
          Length = 151

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               ID GT RIGLA+SD     AHP   L      +   E+   +  + +   ++GLPL
Sbjct: 2   RTLGIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVE--QEIAEIVRQKRVTTVVLGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQK 135
            M+G  G       AF   +    +  V   F DERLT+V+A++ L ++     K++ + 
Sbjct: 60  RMDGHRGEAATRVEAFADRLSKALRHEVTVKFVDERLTSVAAERSLGLEGKQKTKEQKKL 119

Query: 136 VDSIAAALILQEVLD 150
           VD +AA  ILQ+ L+
Sbjct: 120 VDQVAAVAILQDYLN 134


>gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma
           citri]
          Length = 139

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G+K +GLA S       +           Q A  L   ITTE  +  I+G P NM
Sbjct: 6   LAVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N + GPR      FV N++ + +   +     DERLTT  A QI+++ N+SR+KR QK D
Sbjct: 66  NNTIGPRALMVSDFV-NLLKQLLDPTITIHLVDERLTTHQAHQIMLEANLSRQKRKQKKD 124

Query: 138 SIAAALILQEVL 149
           S+AA LIL+  L
Sbjct: 125 SLAAQLILETYL 136


>gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Rv]
 gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis CDC1551]
 gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis
           AF2122/97]
 gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis F11]
 gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis 02_1987]
 gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis T92]
 gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis EAS054]
 gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis GM 1503]
 gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis T17]
 gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis T46]
 gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis K85]
 gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis K85]
 gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
 gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis 210]
 gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis KZN R506]
 gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
           SUMu001]
 gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
           SUMu003]
 gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
           SUMu005]
 gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis KZN V2475]
 gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase
 gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase
 gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase
 gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase
 gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase
 gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
 gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
           SUMu001]
 gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
           SUMu003]
 gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
           SUMu005]
 gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
           SUMu012]
 gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148]
 gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 170

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 54/138 (39%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   ID+G  RIG+A SDP    A P   + R +  +    L +          I+
Sbjct: 19  PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  +    G            +  R    P    DERLTTVSAQ+ L    V   ++ 
Sbjct: 79  GLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQR 138

Query: 134 QKVDSIAAALILQEVLDR 151
             +D  AA  ILQ  LD 
Sbjct: 139 AVIDQAAAVAILQSWLDE 156


>gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL037PA2]
 gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL044PA1]
 gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
           HL037PA3]
          Length = 160

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G  RIG+A SD     A P   +  +   +    L   +        I+GLP+ +
Sbjct: 16  LAIDWGKARIGVAASDRDAILAFPVETV--QTANRPMQRLAEIVAEYEPVEVIMGLPVAL 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           NG+E       R     + +    +P  + DER+TT +A + L D   + +++   +D  
Sbjct: 74  NGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQA 133

Query: 140 AAALILQEVLDRIS 153
           AA  IL++VL+++ 
Sbjct: 134 AAVAILEDVLEQVR 147


>gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
           4028]
 gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
           4028]
          Length = 133

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID G KRIGLA+    +  A P   L +    +   +L+S I +E + A ++GLPL
Sbjct: 2   KILGIDYGQKRIGLAM--ARQGMAFPFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG E         F  ++  R+  +P    +E LT+  A+Q L +  V  +K  + +D
Sbjct: 60  DMNGDETLTTRQVLNFRDSLA-RRTELPIHLVNEALTSFDARQRLREAGVPERKHKEMLD 118

Query: 138 SIAAALILQEVLDR 151
            +AA  IL+  L+ 
Sbjct: 119 QMAAVCILETYLEN 132


>gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1]
 gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 128

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D G KRIG+A+ + G + A P   +           +   I     A  ++GLPL
Sbjct: 3   TILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+E       R F + +  R   V  V  DER ++           V + +R +++D
Sbjct: 63  HPDGAEHEMSVRCRRFANQLHGR-YGVEVVLVDERYSSA----------VIQHQRGEQID 111

Query: 138 SIAAALILQEVLD 150
             AAA+ILQ+  D
Sbjct: 112 DQAAAIILQQYFD 124


>gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454]
 gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
          Length = 146

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D G KRIG+AI +   R A     +  +        +   I        ++GLP+
Sbjct: 7   TLLAFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPV 66

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        R F + + + +  +P  + DER ++V           +   R   VD
Sbjct: 67  HPDGAPHEMTRQARRFGNQL-NGRFNLPVTWVDERYSSV--------AAEAAGARGAVVD 117

Query: 138 SIAAALILQEVLDRISF 154
           + AA +ILQ+  D  S+
Sbjct: 118 AQAACIILQQYFDEQSY 134


>gi|119503502|ref|ZP_01625585.1| Holliday junction resolvase-like protein [marine gamma
           proteobacterium HTCC2080]
 gi|119460564|gb|EAW41656.1| Holliday junction resolvase-like protein [marine gamma
           proteobacterium HTCC2080]
          Length = 132

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D G KRIG+A+ +       P   L  +        +            ++G PLNM
Sbjct: 1   MAFDWGLKRIGVAVGNTLLATCEPLCVLNARDGVPNWAAIAELFKEWQPEQLVVGDPLNM 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + S        R F   + + +  +P    DERLT+  A+  L +  +        VD+ 
Sbjct: 61  DDSVAEITRRARRFSRQL-EGRFNLPVSLTDERLTSREARIQLEEQGLPYH---GAVDAH 116

Query: 140 AAALILQEVL 149
           AA LILQ  L
Sbjct: 117 AAQLILQSWL 126


>gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
 gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
          Length = 146

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 6/143 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I SID G KR GLA++D  +  A+    +     +     L  +I  E +   +IG 
Sbjct: 1   MARILSIDYGKKRTGLAVTDSLQIIANGLATV---STSILIDFLKDYIAKETVELIVIGR 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKR 132
           P+  +G+    +     FV+        VP  ++DER T+V A ++++D  +    R++R
Sbjct: 58  PVKPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRER 117

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
              VD I+A +ILQ+ +     +
Sbjct: 118 KGLVDEISATIILQDFMQYKRSM 140


>gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
 gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
          Length = 153

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 66/135 (48%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  +  +D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GL
Sbjct: 3   SGRLIGVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P  +NG EG      R++   +  +   +P    DERL++V+A + L    VS ++  + 
Sbjct: 63  PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122

Query: 136 VDSIAAALILQEVLD 150
           VD +AA  IL++ ++
Sbjct: 123 VDQVAAQQILEQAIE 137


>gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase
          Length = 171

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
                   +D+GT RIGLA+SD G R A P   L R+        Q    +   I   +I
Sbjct: 13  PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 72

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILI 123
              ++GLP ++ G+    V   +     +  R       +V     DERLTTV A Q L 
Sbjct: 73  VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 132

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
              VS KK  + VD  AA  ILQ  LD RI+ LE+
Sbjct: 133 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLEN 167


>gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J]
 gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase
 gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J]
          Length = 143

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             S+     + + D G KRIG+A+ +   R A     +  + V     ++   +      
Sbjct: 9   TASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPV 68

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            F++G+P++ +G E P +   + F + ++ R   +P  + DER ++++AQ    D   S 
Sbjct: 69  GFVVGMPVHPDGEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQ----DAGAS- 122

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
                 +D+ AA +ILQ+  D 
Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141


>gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
           L2-32]
 gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase
 gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
           L2-32]
          Length = 151

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             IDLG  R+GLA+SDP    AHP   + V     +   E++  I  E++   +IGLPL 
Sbjct: 4   LGIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPLL 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126
           +NG EG      R +  N+  R              VP     DERLTTV+A   L D  
Sbjct: 64  LNGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDAR 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
           +  +K    VD  +A +ILQ  LDR
Sbjct: 124 IGGRKHRPMVDQQSAVVILQTALDR 148


>gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
 gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase
 gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
          Length = 151

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 3/142 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +DLG K +G+A+S      A     +     K  +    L   I    I   ++G P 
Sbjct: 10  LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLGYPK 68

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MN   G +   +  F   + ++   V  + WDERL+TV A Q+L   N  + K +Q  D
Sbjct: 69  HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKD 128

Query: 138 SIAAALILQEVLDRISFLESSK 159
            IAA +ILQ  LD I    + +
Sbjct: 129 EIAATIILQNYLDYIKLHTNKE 150


>gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
           VCU144]
          Length = 123

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
              I  +D+G+K +G+AISD     A     L   +        +L+  I    +   +I
Sbjct: 3   KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP NMN S G R  ++  +   + +    +  V WDERL+T++A++ L++ +VSR+KR 
Sbjct: 63  GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122


>gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 147

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++ +Q I + D GT+++G+AI       A+P P  + K       +LL  +       F+
Sbjct: 4   IQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFL 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+ SE       R F   +  +   +     DERLTT  A++ L       + +
Sbjct: 64  VGLPLNMDDSESELSARARKFARRLRHQ-TNIQTWMVDERLTTREAREELESYQSKGQAK 122

Query: 133 IQKVDSIAAALILQEV 148
               DS AAAL++Q  
Sbjct: 123 RLSADSFAAALLIQSW 138


>gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 152

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 68/141 (48%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID+G  RIG+A S  G   A P   L  +       ELL+ IT  N AA  +GLP  M
Sbjct: 7   LAIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLPKLM 66

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G EG      R++   ++ R   +P    DERL++  A   L    V  +++ + VD +
Sbjct: 67  SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQL 126

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA  IL   L+ ++   +  G
Sbjct: 127 AAVTILTRALETLTQTGNLPG 147


>gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
 gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
          Length = 164

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G +RIGLAI+DP    A P   L R  +      +  FI    +   ++G PL
Sbjct: 6   RILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVVVGNPL 65

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK------- 130
           + +GS  P+     AF   + +    +     DERLTT+ A  +L     S +       
Sbjct: 66  HADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTAGRSHG 125

Query: 131 ---KRIQKVDSIAAALILQEVL 149
               R   +D +AA L+L+  L
Sbjct: 126 KTIDRKDLIDQVAATLLLESFL 147


>gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
           B-14911]
 gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
           B-14911]
          Length = 111

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 47  LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
           +  ++      +L   I   +++  ++GLP NMNG+ GPR  +++ F   + +R   +P 
Sbjct: 6   ISEEEKEFGFDQLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAGEL-ERLFGLPV 64

Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           V WDERLTT++A+++L++ +VSRKKR + +D +AA++ILQ  LD   
Sbjct: 65  VLWDERLTTMAAERVLLEADVSRKKRKKVIDKMAASMILQGYLDSRK 111


>gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC
           19977]
 gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase
 gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus]
          Length = 166

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 1/141 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
                   +D+GT RIG++ SDP    A P   + R  K       +   +   ++   +
Sbjct: 17  PGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVV 76

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP N+    G        F   + +R   VP    DER TT +AQ+ L +  V  +++
Sbjct: 77  VGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQ 136

Query: 133 IQKVDSIAAALILQEVLDRIS 153
              +D  AA  ILQ+ L++  
Sbjct: 137 RGIIDQAAAVAILQDWLEQRR 157


>gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
           12112]
 gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
           12112]
          Length = 142

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G  RIG+A SD    FA     + R  +T     +   I +E + A ++GLP   
Sbjct: 5   LGLDIGDVRIGVAKSDGLAMFASSYEVIDR-NITDPFERIKEIINSEKVIALVLGLPKTK 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
           +G    +V     FV  +       +P  + DER TT  A+  L +    + K+R + VD
Sbjct: 64  DGQNSIQVEKIERFVSELKLFIPENLPIHYIDERYTTKEAEYYLKNFSKKNGKERRKVVD 123

Query: 138 SIAAALILQEVLDRIS 153
            +AA +ILQ  LD+  
Sbjct: 124 MVAAQIILQNFLDKYR 139


>gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis
           ATCC 700755]
 gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis
           ATCC 700755]
          Length = 137

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D G KR G+AISD  +  A     +  + + Q   EL   I  E++   ++G P 
Sbjct: 4   KVIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
           +++G       +   F+ ++      +     DER T+  A Q +ID  + +K+R     
Sbjct: 61  HIDGKPMQLEKNILYFIEDVQALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKGL 120

Query: 136 VDSIAAALILQEVLDRI 152
           VD I+A +ILQ  L  I
Sbjct: 121 VDEISATIILQNYLQYI 137


>gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N]
 gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase
 gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N]
          Length = 131

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +     A P   +  ++  +    + + +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           L L  +G + P     R F + +  R   V     DER +++ AQ+ L            
Sbjct: 62  LALATDGGDQPATLRCRRFANQLHGR-FGVTVELVDERGSSMEAQEKLGSH--------A 112

Query: 135 KVDSIAAALILQEVLDRIS 153
             D++AAA+ILQ  LDR++
Sbjct: 113 PDDAMAAAIILQRYLDRLA 131


>gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
 gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
          Length = 143

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             + + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+P
Sbjct: 16  GTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMP 75

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           ++ +G E P +   + F + +  R   +P  + DER ++++AQ    D   S       +
Sbjct: 76  VHPDGEEQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAS----DDVL 126

Query: 137 DSIAAALILQEVLDR 151
           D+ AA +ILQ+  D 
Sbjct: 127 DAEAARIILQQFFDE 141


>gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus
           F0309]
 gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus
           F0309]
          Length = 162

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 57/141 (40%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+GT R+G++  DP      P   L R         L   + + +    I+GLP ++
Sbjct: 9   IGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHL 68

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G EG      R +   +      V     DER+T+  A   L    +   +    +D +
Sbjct: 69  RGGEGISAKGARKYARRIKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVIDQV 128

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA +IL++ L+       + G
Sbjct: 129 AAQIILEQALELERMGGRAPG 149


>gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
           27678]
 gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
 gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
           27678]
 gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
          Length = 158

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP    AHP   + V     +   E++  I  E++   ++GLPL 
Sbjct: 4   LGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLL 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126
           +NG  G      R +  N+  R              +P     DERLTTV+A Q L D  
Sbjct: 64  LNGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
           +  ++    VD  +A +ILQ  LDR
Sbjct: 124 IGGRRHRPMVDQQSAVVILQTALDR 148


>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 136

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I SID GTKR GLA++DP +  A     +      Q    L  +   E + AF+IGLP 
Sbjct: 2   RILSIDYGTKRTGLAVTDPLKLIASGLTTV---DTPQLLPFLEKYTAEEAVEAFVIGLPK 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
            +N  +       +  +  + +R   +    +DER T+  A Q +ID  + +K+R  K  
Sbjct: 59  RLNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKAL 118

Query: 136 VDSIAAALILQEVLD 150
           +D I+A LILQ+ L+
Sbjct: 119 IDEISATLILQDFLN 133


>gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
          Length = 151

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +DLG K +G+A+S      A     +     K  +    L   I+   I   ++G P 
Sbjct: 10  LGLDLGEKTLGIALSQ-TGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLGYPK 68

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MN   G +   +  F   + ++   V  + WDERL+TV A Q+L   N  + + +Q  D
Sbjct: 69  HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQMKD 128

Query: 138 SIAAALILQEVLDRISFLESSK 159
            IAA +ILQ  LD I    + +
Sbjct: 129 EIAATIILQNYLDYIKLHPNKE 150


>gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
 gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
          Length = 133

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  ID GTK +GLA+ D   + A P   +      +    +   +   ++   ++GLPL
Sbjct: 2   RVLCIDWGTKSLGLALGDTNLKLATPLKPIP--NRGKVLERIAELVKEYDVRLVVVGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
             +G EG R    R+FV  +       V    WDER TT  A Q+L     SRKK  +  
Sbjct: 60  TPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKELK 117

Query: 137 DSIAAALILQEVLDRI 152
           DS++A +ILQE LD +
Sbjct: 118 DSVSALIILQEYLDSL 133


>gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 155

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     ++ +KS+  ++ I  +D+G K+IG+A SD  +  A       R+ +++    L 
Sbjct: 1   MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +      + +IGLP  ++  E         F + +I +   V     DE L+T  A  
Sbjct: 61  RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKK-CKVHIYLQDESLSTSLATH 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            L    +S  K  +  D IAA +ILQ  LD+I+ ++
Sbjct: 120 ALKITGISITKSKKIDDKIAACIILQRTLDKINAIK 155


>gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase
 gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 161

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLPLN 78
            ++D+G  RIGLA SDP    A P   + R    +     +L      +    ++GLPL 
Sbjct: 7   LAVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLA 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G           F   + D    +     DERL+TVSAQ  L       +K+   +D 
Sbjct: 67  LSGRATASTDDAEGFARRLADA-TEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125

Query: 139 IAAALILQEVLDRISFLESSKG 160
           +AA +ILQ  L+      S  G
Sbjct: 126 VAAVIILQHALETERAAGSPPG 147


>gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
 gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
          Length = 138

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    +D+G  RIG+A  DP    A     + R K T     +   +  E     ++G+
Sbjct: 1   MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKVVVGM 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P +++G++  +V     FV  +      +  +F DER TT  A+  L +    + K+R +
Sbjct: 60  PKSLDGTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119

Query: 135 KVDSIAAALILQEVLDRIS 153
            VD +AA++ILQ+ LD + 
Sbjct: 120 VVDMVAASIILQKYLDTLP 138


>gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum
           EbN1]
 gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase
 gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1]
          Length = 156

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + + D G  RIG+A+ +   R A     L  +        +   +        ++G+
Sbjct: 15  RGTLLAFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGM 74

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQ 134
           P +++G+        R F + +  R   +P +  DERL++ +A   L +      + R Q
Sbjct: 75  PSHLDGTPHEMTARCRRFANQLHGR-FGLPVLECDERLSSAAADAALAEAGTHDWRARKQ 133

Query: 135 KVDSIAAALILQEVLD 150
            +D++AA +ILQ  LD
Sbjct: 134 VLDAVAAQIILQHFLD 149


>gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
 gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
          Length = 138

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +    +D+G  RIG+A  DP    A     + R K T     +   +  E     ++G+
Sbjct: 1   MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKIVVGM 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
           P +++G++  +V     FV  +      +  +F DER TT  A+  L +    + K+R +
Sbjct: 60  PKSLDGTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119

Query: 135 KVDSIAAALILQEVLDRI 152
            VD +AA++ILQ+ LD +
Sbjct: 120 VVDMVAASIILQKYLDTL 137


>gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 189

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITT 65
             +    ++D+GT RIG+A SD   R A P   + R            +    ++  +  
Sbjct: 16  PGDGRRLALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVRE 75

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQI 121
                 IIGLP ++ G+    V   R     +          +P  F DERLTTV A Q 
Sbjct: 76  YEPVEVIIGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQA 135

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
           L    ++ +   + VD  AA  ILQ  LD R S+L +S+
Sbjct: 136 LHASGLTERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174


>gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 138

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 1/139 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +     I ++D G KRIG+A+SDP R F+ P   L  K   Q   EL   IT   +   I
Sbjct: 1   MSSKGRILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLI 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IG+P  ++GS  P+    +  ++ + D  + +    +DER +T  A + L  M  + ++ 
Sbjct: 61  IGIPYAIDGSITPKTEECQQILNRLKD-VLSISVEGFDERYSTWEANEELKKMGYNWRQA 119

Query: 133 IQKVDSIAAALILQEVLDR 151
            +  D+++AA+IL+E L++
Sbjct: 120 KEIKDAMSAAMILKEFLNQ 138


>gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168]
 gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168]
          Length = 122

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 32  AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
           AI       A     +  +  T     +   +        I+GLPLNM+G+E P     R
Sbjct: 2   AIGQRITGSARALAAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR 61

Query: 92  AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            F  N I  +  V     DERL+TV A+  L +    R     K+DS +A +IL+   ++
Sbjct: 62  KFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKIDSASAVIILESYFEQ 120


>gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
           266]
 gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
           266]
          Length = 142

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L   + I +ID GTKRIGLA +DP + FA       R  +      L        I   +
Sbjct: 3   LTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFERTTLFAL---LEKMAANNEIEKIL 59

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G PL+ + S          F+  +      +P    DE  ++  A QILI     +K R
Sbjct: 60  VGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKKAR 119

Query: 133 IQK--VDSIAAALILQEVLD 150
            +K  +DS AA +IL++ L+
Sbjct: 120 KEKGRIDSAAACVILRDYLE 139


>gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
           27679]
 gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
           27679]
 gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 158

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             +DLG  R+GLA+SDP    AHP   + V     +   E++  I  E++   ++GLPL 
Sbjct: 4   LGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLL 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126
           +NG  G      R +  N+  R              +P     DERLTTV+A Q L D  
Sbjct: 64  LNGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
           +  ++    VD  +A +ILQ  LDR
Sbjct: 124 IGGRRHRPMVDQQSAVVILQTALDR 148


>gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
 gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
          Length = 137

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  R+G+A+SD     A P   L  ++V   A      +        + GLP 
Sbjct: 2   RVVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLPK 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +++G+ G +         ++      +P  F DERL++  A++IL       K+    +D
Sbjct: 62  SLDGACGAQAEKITQQAQHIA-ACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHID 120

Query: 138 SIAAALILQEVLD 150
            IAA+L LQ  LD
Sbjct: 121 MIAASLFLQAYLD 133


>gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
 gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase
 gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
          Length = 134

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                +   D G KRIG+AI     R A P   +  K        +         +A ++
Sbjct: 4   PIEGVVIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP+ +NG E       R F   +  R    P  + +E+L+++ A+Q        + K  
Sbjct: 64  GLPMRLNGEEQALTQPARKFGQRLSGR-YQRPVYYIEEQLSSIEAEQ-------RKTKTD 115

Query: 134 QKVDSIAAALILQEVLDRI 152
           Q +D  AA +IL+  LD +
Sbjct: 116 QPMDDHAAQIILENWLDAL 134


>gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR51-B]
 gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
           NOR51-B]
          Length = 143

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D G ++IG+AI +       P   +  +       ++   I        ++G PL
Sbjct: 7   TVMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPL 66

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+GS+         F   +  R    P    DERLT+  A+    D   +       +D
Sbjct: 67  NMDGSDSEMGARAAKFSRQLNGRFAK-PVDLVDERLTSREAKSQSRDRGHNGNYTTDPID 125

Query: 138 SIAAALILQEVLD 150
             AAALIL    +
Sbjct: 126 DEAAALILNTWFE 138


>gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
 gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
          Length = 165

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFIIGLP 76
             +D+GT R+G+A++DP    A P   L R    + A +   +       ++    +GLP
Sbjct: 11  MGVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLP 70

Query: 77  LNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
            ++NG E       R +       +  R         DERL+TV+A + L+D  VSR++ 
Sbjct: 71  RSLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREH 130

Query: 133 IQKVDSIAAALILQEVLDR 151
           + +VD  AA   LQ  +D+
Sbjct: 131 MDRVDQAAAVTFLQTAVDQ 149


>gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
           271]
 gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase
 gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
           271]
          Length = 142

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I ++D GTKRIGLA +DP + FA P      + + +   E+      + I   +IG 
Sbjct: 6   RKRIIAVDYGTKRIGLAKTDPLQLFAQPVGTFSEEALFRAIKEISGL---DGIGRILIGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PLN +GS         AF   + +    +P    +E  ++ SA QILI+  +SRKKR   
Sbjct: 63  PLNADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHEK 122

Query: 134 QKVDSIAAALILQEVLDR 151
            ++DS +A ++LQ  LD+
Sbjct: 123 GRLDSASACVLLQAHLDK 140


>gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7]
 gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7]
          Length = 137

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  + + D GTK+IG+AI +   R A P   L      Q    +   +        ++G
Sbjct: 5   PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL  +GSE       R F + +  R   V  V  DER +++ AQQ+L            
Sbjct: 65  LPLATDGSEQYASLRCRRFANQLHGR-FGVETVLVDERGSSMEAQQML--------GNNT 115

Query: 135 KVDSIAAALILQEVLDRIS 153
             D++AAA+ILQ  LD ++
Sbjct: 116 DDDAVAAAIILQRYLDGLA 134


>gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12]
 gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase
 gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 139

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID G K +GLAISDP R  A        K        L   +    +   ++G P+
Sbjct: 2   RVLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYPI 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           ++ G E  R    R     +I+  + +P  F DERLTT+ A+++L++ ++ RKKR    +
Sbjct: 62  SLRGHENERTQKVRHIAE-LIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLKN 120

Query: 138 SIAAALILQEVLDRIS 153
             AA +ILQ+ LD  S
Sbjct: 121 KQAAVIILQKYLDSSS 136


>gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 146

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K+IG+A+ +   +   P   L  +        + + I        ++GLPLN
Sbjct: 14  VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG++    + +  F  N++  K  +     DERLTTV A+ I+   N  +  + +K+ S
Sbjct: 74  INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 132

Query: 139 IAAALILQEVLDR 151
            AA +IL+   ++
Sbjct: 133 CAAVIILESWFNQ 145


>gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase
 gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase
 gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase
 gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
          Length = 135

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K+IG+A+ +   +   P   L  +        + + I        ++GLPLN
Sbjct: 3   VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +NG++    + +  F  N++  K  +     DERLTTV A+ I+   N  +  + +K+ S
Sbjct: 63  INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121

Query: 139 IAAALILQEVLDR 151
            AA +IL+   ++
Sbjct: 122 CAAVIILESWFNQ 134


>gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi]
 gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase
 gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi]
          Length = 155

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M     ++ +KS+  ++ I  +D+G K+IG+A SD  +  A       RK +++    L 
Sbjct: 1   MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                    + +IG+PLN++  E     +   F + +I +   V     DE L+T  A  
Sbjct: 61  RIFKENEAGSMVIGIPLNIDEQETKWCKTIIQFANKIIKK-YKVNTYLQDESLSTSIATH 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
            L    +S  K  +  D I+A +ILQ  LD+I+ ++
Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155


>gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile
           DSM 44702]
          Length = 178

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENI 68
                   +D+GT RIG+++SDP    A P   +   K +          +L  I    +
Sbjct: 22  PGRGRRLGLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFV 81

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLP+++             +   +  + + +P    DER++T++A   +    V+
Sbjct: 82  VEVVVGLPVSLRSHRTRSTRRAENYATRL-RKNLDIPVRLVDERMSTMAATNAMHASGVN 140

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +KK   ++D  AA  ILQ  LD      +  G
Sbjct: 141 QKKGRSRIDQAAAVHILQGWLDARKAFSARHG 172


>gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
           15894]
          Length = 184

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69
           P      +D+G  RIGLA SDP    A P   + R        +     +   +     A
Sbjct: 27  PRGARLGVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAA 86

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
              +GLP +++G EG      RAF   +      VP    DER++TV+A   L       
Sbjct: 87  VVYVGLPRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKS 146

Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           K     +D  AA +ILQ  LD      +  G
Sbjct: 147 KSHRPVIDQAAAVIILQSALDAERAAGTRAG 177


>gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
           2338]
          Length = 158

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
           P +    ID+G  R+G+A+SDP    A P   L R  +       L+  +    +   ++
Sbjct: 12  PGRR-LGIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVV 70

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G+P  + G  GP   +  ++   + +R   VP V+ DERLTTV+A ++L    V  KK+ 
Sbjct: 71  GMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQR 130

Query: 134 QKVDSIAAALILQEVLDR 151
             VD  AA  ILQ  LD 
Sbjct: 131 AVVDQAAAVEILQAWLDS 148


>gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20]
          Length = 155

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D+G  RIG+A  D     + P   L R +      E +  +        I+GLP +M
Sbjct: 3   IAFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHM 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            G         RA+  ++  R    V     DERLTTVSA + L    +  +     VD 
Sbjct: 63  GGGSSSSTKDARAWARDLASRLPRRVCVRLVDERLTTVSAHRDLHAAGLKERSFRGIVDQ 122

Query: 139 IAAALILQEVL--DRISFLESSK 159
            AA +IL++ +  +R+S + + +
Sbjct: 123 AAAVVILEQAITTERMSGVPAGE 145


>gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase
 gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 138

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G++RIG+AISDP +  A P   L  +K    +  L        I   +IG P+
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLYSC-LDKIFNEHQIEKIVIGYPV 60

Query: 78  ---NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
              + +     ++         + +R+  V  + WDER +T + ++IL + NVS +KR +
Sbjct: 61  SKFHPD-KATEKLQKIDEICSEL-ERRYKVGIIKWDERFSTKAVERILREENVSWQKRKK 118

Query: 135 KVDSIAAALILQEVLDRIS 153
            VD +AA  ILQ  LD I+
Sbjct: 119 VVDKLAAVYILQGYLDFIN 137


>gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
 gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
          Length = 147

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
             D G ++IG+A+       A P   L  +        +   I        I+GLPLNM+
Sbjct: 18  GFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLPLNMD 77

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            SE     + R F + +  R   +   + DERL+T+ A++ L  +  S   R  ++D +A
Sbjct: 78  QSEQLLTQAARRFGNRLHGR-YGLAVEWVDERLSTIEARERLN-LKPSSLGRHPELDQVA 135

Query: 141 AALILQEVL 149
           A  ILQ  L
Sbjct: 136 AQCILQTWL 144


>gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900]
          Length = 146

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       FI+GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +   +     DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQEV 148
            DS AAAL++Q  
Sbjct: 125 ADSFAAALLIQSW 137


>gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 157

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 13/145 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             IDLG  R+GLA+SDPG   AHP   + V     +   E++  I  E++   ++GLPL 
Sbjct: 4   LGIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPLL 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126
           ++G EG      R +  N+  R              VP     DERLTTV+A   L D  
Sbjct: 64  LSGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDAQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
           V  +K    VD  +A +ILQ  +DR
Sbjct: 124 VGGRKHRPMVDQQSAVVILQTAIDR 148


>gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF]
 gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
 gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           ACICU]
 gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057]
 gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624]
 gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606]
 gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           AB056]
 gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           AB058]
 gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           AB059]
 gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013150]
 gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013113]
 gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6014059]
 gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
 gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii]
 gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU]
 gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
 gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624]
 gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606]
 gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2]
 gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013150]
 gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6013113]
 gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
           6014059]
          Length = 146

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       FI+GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +   +     DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQEV 148
            DS AAAL++Q  
Sbjct: 125 ADSFAAALLIQSW 137


>gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans]
 gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +   D G KRIG+A+ +   + A P   +           +   +T    A  I+GL
Sbjct: 1   METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P + +G+E       R F + +  R   V  V  DER ++           V   +R   
Sbjct: 61  PRHPDGAEHEMTVRCRRFANQLHGR-FDVATVLVDERYSSA----------VISHQRGDL 109

Query: 136 VDSIAAALILQEVLD 150
           +D  AAA+ILQ+  D
Sbjct: 110 IDDQAAAIILQQYFD 124


>gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus
           RS-1]
 gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus
           RS-1]
          Length = 147

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I +ID G  R+GLA+  PG   A P   +  +        LL+ I  +N    +IG 
Sbjct: 1   MEKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGY 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P    G EG      R F   +  R+  VP  + DE  +T  A + L +  +S ++ + K
Sbjct: 61  PARAGGDEGLTGRQVRNFAARLA-RRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAK 119

Query: 136 VDSIAAALILQEVL 149
           VD++AAA+IL+  L
Sbjct: 120 VDAMAAAVILERYL 133


>gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
 gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase
 gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
          Length = 140

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +   Q I +ID GTKRIG+A SDP   FA P   + R  +++    L   +    +   +
Sbjct: 1   MPLYQRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSKL---LSPMVEAGEVQLVV 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G PLN +G +         F+ ++      +P    +E  ++ SA Q+L+    SRK+R
Sbjct: 58  VGYPLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKER 117

Query: 133 --IQKVDSIAAALILQEVLDR 151
               ++D+ AA L+L + L++
Sbjct: 118 KTKGRLDTAAACLLLSDYLEQ 138


>gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM
           43017]
 gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis
           DSM 43017]
          Length = 154

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
           P +   ++D+G+ R+G+A+SDP    A P   L R     +   EL   +   ++   I+
Sbjct: 6   PGRR-LAVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVIV 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  +    G        +   + +R   V     DERL+TVSA ++L    V  +K+ 
Sbjct: 65  GLPRTLADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQR 124

Query: 134 QKVDSIAAALILQEVLD 150
             VD  AA   LQ  LD
Sbjct: 125 AVVDQAAAVEFLQAWLD 141


>gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
 gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
          Length = 148

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 4/137 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
                D GT  IG+A+       A     L  +      L++   I      AFI+G+PL
Sbjct: 5   TFLGFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKR-IQ 134
           NM+G+E       R F + +  R    P+   DERL+T  A Q L   +    R  R  Q
Sbjct: 65  NMDGTETILAPRARKFGNRLTGRFRK-PWFPVDERLSTREAWQALESQHQLHKRALRGNQ 123

Query: 135 KVDSIAAALILQEVLDR 151
           +VD++AAALIL   L+ 
Sbjct: 124 RVDAVAAALILGSWLES 140


>gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
 gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
          Length = 165

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
             ID+G  R+G+A SDP   FA+P   L R  +       +       ++   ++GLP  
Sbjct: 9   LGIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIVVGLPRL 68

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G EG      RA+   +  R   VP    DERLTTV A Q L D  V  + +   VD 
Sbjct: 69  LSGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQRSVVDQ 128

Query: 139 IAAALILQEVLD 150
            AA LILQ  LD
Sbjct: 129 AAAVLILQSALD 140


>gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 146

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       F++GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +   +  +  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQEV 148
            DS AAAL++Q  
Sbjct: 125 ADSFAAALLIQSW 137


>gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 138

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID GTKR+G+A++DP    A     +   ++     E   ++T  +    +IG 
Sbjct: 1   MARILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDFLNE---YLTVNDCNRLVIGY 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PL +             F+        Y+  + +DER T+  A   ++   + R+KR   
Sbjct: 58  PLTLRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDK 117

Query: 134 QKVDSIAAALILQEVLDRIS 153
             +D I+A +ILQ  L+ IS
Sbjct: 118 AVIDRISATIILQNYLESIS 137


>gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
 gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
          Length = 144

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID GT+RIGLA  D     A P P L      +    L + +    I   ++G P NM
Sbjct: 4   LGIDYGTRRIGLAYGDELG-IATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYPYNM 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +     AF  ++   +  +P    DERLT+  A+  +    +   +    VDS 
Sbjct: 63  DGSAGFKAKEVDAFAESL-RAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIVDSR 121

Query: 140 AAALILQEVLDR 151
           AAALILQ+ LD+
Sbjct: 122 AAALILQDFLDQ 133


>gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
 gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
          Length = 146

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI       A+P P  V K       +LL  +       F++GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +   +  +  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQEV 148
            DS AAAL++Q  
Sbjct: 125 ADSFAAALLIQSW 137


>gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A]
 gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii
           PG-8A]
          Length = 140

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78
            +DLG K +G+AIS      A     +    +       +LL  +    I   ++GLP +
Sbjct: 5   GLDLGEKSLGVAIS-ESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKH 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN   G +      F   ++  K  V  + WDERL+T +A +IL D N    K+    D 
Sbjct: 64  MNNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDE 122

Query: 139 IAAALILQEVLDR 151
           +AA +ILQ  L+ 
Sbjct: 123 VAAQVILQNYLNS 135


>gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
 gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
          Length = 167

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 13/154 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------------TALELLSFITTE 66
             +D+G  R+G+A  DP    A P   L R +                   +L       
Sbjct: 10  LGVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEER 69

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
              A  +GLP +++G+ G        +   +     ++     DERLT+ +A   L D  
Sbjct: 70  LAVAVYVGLPKHLSGARGVSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDAG 129

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
              ++    +D  AA +IL   L+    L S  G
Sbjct: 130 RRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163


>gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
 gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
          Length = 149

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G KRIG AI +   R A P   +  +       ++   I        I+GLP  
Sbjct: 24  ILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVKLIVGLPSY 83

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+E       + F + +  R   +  +  DER ++           V   +R +  D+
Sbjct: 84  PDGTEHEMTRRCKRFANQLRGR-FSLEIIMVDERYSSS----------VLHFQRGKADDA 132

Query: 139 IAAALILQEVLDR 151
            AAALILQ+  D 
Sbjct: 133 HAAALILQQYFDE 145


>gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase
 gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 144

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  N  + S D GTK IG+AI       + P   +   K      ++ + I        I
Sbjct: 2   MYRNNLLISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYII 61

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLPLNM+GS        + F   + ++   +P +  DERLTT+ A+ +L      +  +
Sbjct: 62  VGLPLNMDGSYQTSTIKAKKFAKQLRNKFF-MPVMMHDERLTTIEAKSVLFKKYGYKGLK 120

Query: 133 IQKVDSIAAALILQEVLDRISF 154
            + +DS +A +IL   ++ I F
Sbjct: 121 KKLIDSESAVIILDSWMNSIYF 142


>gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 134

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 8/131 (6%)

Query: 28  RIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFI------TTENIAAFIIGLPLNMN 80
           RIGLA SD  +  A P   +   KK  QT ++LL  I          I   +IGLPL M+
Sbjct: 3   RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G  G      + F   ++ +   +P   WDERLTTV A++ L +  ++RKKR + VD ++
Sbjct: 63  GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121

Query: 141 AALILQEVLDR 151
           A++ILQ  LD 
Sbjct: 122 ASIILQSYLDS 132


>gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
           1501(2011)]
          Length = 179

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 10  VKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTEN 67
            K+  P Q +   +D G K++G+A+ +   + A P   LV           LL  I T  
Sbjct: 20  TKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWK 79

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILI 123
           I   ++GLPLNM+GS          F   +  R    +++VP   +DERLT+V A+++  
Sbjct: 80  IGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAW 139

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149
           ++ + + +R   +D I+A L+LQ  L
Sbjct: 140 ELGLIKNER-DPIDDISACLLLQSYL 164


>gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
 gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
          Length = 139

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
            ++DLG++  G AISD     A                  E+L ++    I   I+G P 
Sbjct: 4   LALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKNEVLRYMKEYKIDGIILGYPK 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +GS+    +    F  +++ + + +P ++ DE+ +T +A++ILI + ++R+KR    D
Sbjct: 64  KNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKNFKD 122

Query: 138 SIAAALILQEVLDRIS 153
            +AA LIL++ L+   
Sbjct: 123 KLAAQLILEDYLNYYR 138


>gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 147

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I + D GT+++G+A+       A P      K       EL   I       F++GLP
Sbjct: 8   QMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPNVFLVGLP 67

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+ SE       R F   +  +   +     DERL+T +A+  L   +   + +    
Sbjct: 68  LNMDDSESELSARARKFARRLRHQ-TNIETWMVDERLSTRAARDELSHYHAQGRGKKVSA 126

Query: 137 DSIAAALILQEV 148
           DS+AA L ++  
Sbjct: 127 DSLAATLFIESW 138


>gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake]
 gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase
 gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake]
          Length = 156

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    I++ VK +   + I  +D G K+IG+A+SD     A P    +++   +    L 
Sbjct: 1   MLYKSIDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLY 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +     N+ + +IG P+ ++G E           + +I +   +     DER +T  A +
Sbjct: 61  NIFVENNVGSMVIGWPIELSGIESELCQKVVLLANRIIAK-YKINIYLHDERYSTAMATR 119

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           +    N+ RK+     D IAA LILQ+VLD
Sbjct: 120 VAKLANIKRKESQSIDDKIAAMLILQQVLD 149


>gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 169

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
             +D+GT R+G+A+ DP    A P   + R  K       ++      +     +GLP  
Sbjct: 13  LGVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYVGLPQT 72

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           + G+E       RA    + D  V           DERL++VSA Q L    ++ +++ +
Sbjct: 73  LRGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAGREQRK 132

Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
            +D +AAA ILQ  L+    +E S+G
Sbjct: 133 VIDQVAAAGILQHALE----MEKSRG 154


>gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
 gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
          Length = 142

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
             ID G  R GLA+SDP  R A P   L  +           L + IT E   A ++GLP
Sbjct: 1   MGIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAALAARITAEEAEAVVMGLP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L  +G++       R     +  R+V +P  +  E L++  A   L D  ++ +KR   +
Sbjct: 61  LLDDGTDSLTTRQVRNVTERL-KRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKAVL 119

Query: 137 DSIAAALILQEVL 149
           D  AA  IL   L
Sbjct: 120 DQQAAVRILASFL 132


>gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha
           JMP134]
 gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase
 gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134]
          Length = 141

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + L  +  + + D G K+IG+A+ +   R A     L    V      +   I       
Sbjct: 7   RELPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQ 66

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G+P+N  G E P +   R F + + + +  +P  + DER ++  A      M     
Sbjct: 67  LVVGMPVNPEGGEQPSMRLARRFGNQL-NGRYSLPVEWVDERYSSRMA-----AMGG--- 117

Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
            R  ++D+ AA +ILQ+  D++ 
Sbjct: 118 ARRGELDAEAARIILQQYFDQLP 140


>gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           PA7]
 gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase
 gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 144

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + + KP + +   D GT++IG+A+       A     L  +        + + I      
Sbjct: 1   MAADKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           A ++GLPLNM+GS          F   + + +  +P    DERLTT +A+   +      
Sbjct: 61  AIVVGLPLNMDGSPSEMSERAEKFGRRL-NGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119

Query: 130 KKRIQKVD 137
             R + VD
Sbjct: 120 GYRERPVD 127


>gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase
 gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 141

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR+GL+++DP +  A P   +       T   L +++  EN+ AF++G 
Sbjct: 1   MGRIMAIDYGLKRVGLSVTDPLQIIASPLTTVAAND---TLTFLQTYVKKENVEAFVVGY 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P ++     P + +   F+  +            DER T+  A   L++    +K R  K
Sbjct: 58  PTDIKDKNTPIIVAISQFIELLQRNFPDQQIFQHDERYTSKLAAASLVEGGFKKKDRRNK 117

Query: 136 --VDSIAAALILQEVL 149
             +D ++A +ILQ  L
Sbjct: 118 ENLDKLSATIILQSFL 133


>gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 129

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 7   LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
           M+G+          F   + + +  V     DERLTT  A+ + +         R   VD
Sbjct: 67  MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125

Query: 138 SIAA 141
           +IAA
Sbjct: 126 AIAA 129


>gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
 gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
          Length = 168

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)

Query: 11  KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           K L P+   P+ ++D+G KRIG+A+ D           L+R+       +L   +     
Sbjct: 19  KDLPPDFALPLIALDIGMKRIGVAVCDRFGISCRGVTCLMRRDHGWP-QQLAKVVREYGA 77

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
            + + GLP NM+G+EG +    RA V  +  + + +P  F DERL+T +A++ L    + 
Sbjct: 78  KSVVAGLPKNMDGTEGVQAADARAAVAEL-KKTLPLPVTFQDERLSTWTAKERLYAQGLR 136

Query: 129 RKKRIQKVDSIAAALILQEVL 149
            KK  +K+D  AAA+IL++ L
Sbjct: 137 EKKVQEKLDQTAAAVILEDFL 157


>gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase
 gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 138

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR G AISDP +        ++ +K     + L +     +I  F++G 
Sbjct: 1   MGRIVAIDYGEKRTGFAISDPLKMIVSSFVTVLSRK---AVMYLKNCTENYDIELFVLGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  M+ +    +     F  N+      +     DER T+V A +I+I+  V + KR   
Sbjct: 58  PRQMDYTPSENMPRVEKFKRNLRRVIPSIDVQMVDERFTSVLAHRIMIEGGVKKIKRQDK 117

Query: 134 QKVDSIAAALILQEVLDRIS 153
             VD ++AA++LQ  L+ + 
Sbjct: 118 GLVDRLSAAILLQTYLEFLR 137


>gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase
 gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 137

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K IG+A+ +   +       L  K  +     + + +        ++GLPLN
Sbjct: 3   VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G+          F   ++  K  +     DERL+T  A+ ++   N  +  + +K+ S
Sbjct: 63  IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121

Query: 139 IAAALILQEVLDR 151
           +AA +IL+   ++
Sbjct: 122 VAAVIILESWFNQ 134


>gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           PAO1]
 gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2]
 gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           LESB58]
 gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
           PAb1]
 gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
 gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase
 gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase
 gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase
 gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58]
 gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
          Length = 144

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + S KP + +   D GT++IG+A+       A     L  +        + + I      
Sbjct: 1   MASDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           A ++GLPLNM+GS          F   + + +  +P    DERLTT +A+   +      
Sbjct: 61  AIVVGLPLNMDGSPSEMSERAEKFGRRL-NGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119

Query: 130 KKRIQKVD 137
             R + VD
Sbjct: 120 GYRERPVD 127


>gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 145

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L P + + +ID GTKRIG+A SDP   FA P     R  +++    L + I +++IA  I
Sbjct: 3   LTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSK---ALGTMIQSDDIALVI 59

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G PL+ NG +         F+  + +    +     DE  ++  A+ IL+    SRK R
Sbjct: 60  VGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKVR 119

Query: 133 --IQKVDSIAAALILQEVLDR 151
               +VDS AA ++L+E L+ 
Sbjct: 120 QQKGRVDSAAACILLREYLEN 140


>gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 138

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++   +       N  + ++G+
Sbjct: 1   MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL D+N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA++ILQ  LD
Sbjct: 120 VVDKVAASIILQTYLD 135


>gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
 gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum
           ATCC 33693]
 gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
 gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 138

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++   +       N  + ++G+
Sbjct: 1   MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL D+N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA++ILQ  LD
Sbjct: 120 VVDKVAASIILQTYLD 135


>gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117]
 gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis
           Re117]
          Length = 157

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
             +D+G  R+G+A SDP    A P   L R  K       LL  I    +    +G P +
Sbjct: 6   LGVDVGLARVGVAASDPSGILATPVMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           + G+        R +   + +      + +     DERL+TV+A + L       +   +
Sbjct: 66  LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA  ILQ+VL+
Sbjct: 126 VVDQVAATEILQQVLE 141


>gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 191

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
            I ++D G  R GLA  D            +  K   + A  +            +IGLP
Sbjct: 50  KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIGAELIVIGLP 109

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+EG R   +R      ++    +P   WDER TT +A  IL +      KR + +
Sbjct: 110 LNMDGTEGERAIKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADILDESGTFGTKRKEIL 168

Query: 137 DSIAAALILQEVL 149
           DS++A +IL + L
Sbjct: 169 DSVSATVILDDYL 181


>gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
          Length = 163

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G +RIG+A+         P   +  +        L  ++        ++G PLN+
Sbjct: 21  LGLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNL 80

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQK 135
           +G+  P     + F   + +R   +P    DER ++  A++ L +   S    RK +   
Sbjct: 81  DGTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGD 139

Query: 136 VDSIAAALILQEVL 149
           +D+++AA++L    
Sbjct: 140 IDALSAAILLDNWF 153


>gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 148

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G K IG+A+ +   +       L  K  +     + + +        ++GLPLN
Sbjct: 14  VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 73

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           ++G+          F   ++  K  +     DERL+T  A+ ++   N  +  + +K+ S
Sbjct: 74  IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 132

Query: 139 IAAALILQEVLDR 151
           +AA +IL+   ++
Sbjct: 133 VAAVIILESWFNQ 145


>gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
           44233]
 gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
           44233]
          Length = 169

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------------KVTQTALELLSFITTEN 67
             +D+GT R+G+A SDP    A P   L R             + T     L   +   +
Sbjct: 19  LGVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRDLVVEHD 78

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +   ++GLP  + G EG  V + RA+   +      VP V+ DERLTTV+A ++L    +
Sbjct: 79  VVEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRVLAQAGI 138

Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESS 158
             K R   VD +AA  ILQ  LD ++    S
Sbjct: 139 KGKARRAVVDQVAATRILQNRLDLLAAGRRS 169


>gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145]
 gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145]
          Length = 147

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q I + D GT+++G+++       A+P P    K       ELL  + +     F++GLP
Sbjct: 8   QTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLP 67

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+ SE       R F   +  +   +     DERLTT  A+  L       + +    
Sbjct: 68  LNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREARDELDHYQAQGRGKKLSA 126

Query: 137 DSIAAALILQEV 148
           DSIAAAL+++  
Sbjct: 127 DSIAAALLIESW 138


>gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
 gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
          Length = 168

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTENIAAFII 73
           P   + ++D G KRIGLA+SD     A P   + R+        E++       ++ +I 
Sbjct: 4   PVGRLLAVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYIF 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL+  G E  R    R     +  R+  +P    DER TT +A + + +   S + R 
Sbjct: 64  GLPLDPGGDETDRSREVREVAGKLATRQP-LPVRLVDERFTTSAALRSIREQGGSTRGRK 122

Query: 134 QKVDSIAAALILQEVL 149
             VD++AA ++L+ VL
Sbjct: 123 GDVDALAACVLLEGVL 138


>gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
 gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
          Length = 145

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGLP 76
             ID G  R GLA +DP    A+P   +         +    L   I  E   A ++GLP
Sbjct: 4   VGIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAALAGRILEERPDAVVMGLP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L  +G+E       R     +  R+V +PF F  E L++ +A++ L ++  + ++    +
Sbjct: 64  LLTDGTESMTTRQVRNVTERL-KRRVPLPFYFMSELLSSEAAERELREVGRTGRRCKAVL 122

Query: 137 DSIAAALILQEVL 149
           D  AA  IL+  L
Sbjct: 123 DQQAAVRILESFL 135


>gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum MolK2]
 gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum MolK2]
          Length = 144

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
             +  +  + + D G KRIG+A+ +   R A     +  + V     ++   I       
Sbjct: 10  APVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVG 69

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           F++G+P++  G + P +   + F + +  R   +P  + DER ++++AQ    D   +  
Sbjct: 70  FVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122

Query: 131 KRIQKVDSIAAALILQEVLDR 151
                +D+ AA +ILQ+  D 
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141


>gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 145

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
           G  R+GLA+SDP   FAHP   +       +   ++++ I  E +   ++GLPL ++G+E
Sbjct: 2   GDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGTE 61

Query: 84  GPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMNVSRKK 131
           G      R +  N+  R   +                 DERLTTVSA + L++  +  ++
Sbjct: 62  GKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSRR 121

Query: 132 RIQKVDSIAAALILQEVLD 150
               VD  +A +ILQ  LD
Sbjct: 122 HRPVVDQQSAVVILQTALD 140


>gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
 gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase
 gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
          Length = 177

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 11  KSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENI 68
            + +P Q +   +D G K++G+A+ +   + A P   L            LL  I T  I
Sbjct: 19  AAARPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRI 78

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILID 124
              ++GLPLNM+GS          F   +  R    +++VP   +DERLT+V A+++  +
Sbjct: 79  GRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWE 138

Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149
           + + + +R   +D I+A L+LQ  L
Sbjct: 139 LGLIKNER-DPIDDISACLLLQSYL 162


>gi|330815719|ref|YP_004359424.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3]
 gi|327368112|gb|AEA59468.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3]
          Length = 147

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 4/143 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
               + + D G KRIG+A+ +   R A     +           + + I      A ++G
Sbjct: 7   REATLLAFDYGEKRIGVAVGNTLTRTARALVIVSNLNREYRFEAVGALIAEWRPDALVVG 66

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LP++ +G+        + F + + + +  +P  + DER ++V A+  L          I 
Sbjct: 67  LPMHPDGTPHEMTQQAKRFGNQL-NGRFNLPVNWIDERYSSVEARAGLRARGAKADAAID 125

Query: 135 KVDSIAAALILQEVLDRISFLES 157
                AA +ILQ  LD++     
Sbjct: 126 A---EAARVILQHYLDQLPDHHE 145


>gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri
           A1501]
 gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas
           stutzeri A1501]
          Length = 142

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK+IG+A+       A     L  +       ++ + +      A ++GLPLN
Sbjct: 7   LLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+GS          F   + + +  +P    DERLTT  A+   +        R + VD
Sbjct: 67  MDGSPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYRERPVD 124


>gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
 gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
          Length = 144

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             S+  +  + + D G KRIG+A+ +   R A     +  + V     ++   ++     
Sbjct: 9   TASVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPV 68

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            F++G+P++  G + P +   + F + +  R   +P  + DER ++++AQ    D   + 
Sbjct: 69  GFVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT- 122

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
                 +D+ AA +ILQ+  D 
Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141


>gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM
           4166]
          Length = 142

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK+IG+A+       A     L  +       ++ + +      A ++GLPLN
Sbjct: 7   LLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+GS          F   + + +  +P    DERLTT  A+   +        R + VD
Sbjct: 67  MDGSPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYRERPVD 124


>gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 156

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           + +  +D G  ++G+A+ +   + A P              ELL  I +  ++  IIGLP
Sbjct: 12  ETVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLP 71

Query: 77  LNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           LNM+GS     +  + F   +     +     P +  DERLT+  A+ +  +  + +   
Sbjct: 72  LNMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSD- 130

Query: 133 IQKVDSIAAALILQEVL 149
            + +DSIA+A++L   L
Sbjct: 131 KEPIDSIASAIMLGSWL 147


>gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829]
 gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
 gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
          Length = 141

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  R+G+A+SD     A P   L  ++V   A      +        + GLP 
Sbjct: 2   RVLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + G  G +          +  R   +   F DERL++  A++IL +   S K+    +D
Sbjct: 62  TLAGDVGAQAQKLMEQAQTIA-RACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHID 120

Query: 138 SIAAALILQEVLDRIS 153
            IAA+L LQ  LD   
Sbjct: 121 MIAASLFLQAWLDERR 136


>gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1]
 gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase
 gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1]
          Length = 147

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +Q I + D GT+++G+AI       + P      K       +LL  +       F++GL
Sbjct: 7   HQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGL 66

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +   +     DERLTT  A+  L       + +   
Sbjct: 67  PLNMDDSESELSARARKFARRLRHQ-TNITTWMVDERLTTREARDELESYQEQGRAKKIA 125

Query: 136 VDSIAAALILQEV 148
            DSIAA+L++Q  
Sbjct: 126 ADSIAASLLIQSW 138


>gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 146

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ I + D GT+++G+AI        +P P  V K       +LL  +       F++GL
Sbjct: 6   SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PLNM+ SE       R F   +  +   +  +  DERLTT  A++ L       + +   
Sbjct: 66  PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124

Query: 136 VDSIAAALILQEV 148
            DS AAAL++Q  
Sbjct: 125 ADSFAAALLIQSW 137


>gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
 gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
          Length = 140

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID+G  R G+A+SD   R A P   L   +V   A      +        + G PL +
Sbjct: 4   LAIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G  GP+    RA     I     +P  F DER+++  A++IL +   + ++   K+D I
Sbjct: 64  AGELGPQAERIRAEAEA-IGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMI 122

Query: 140 AAALILQEVLDRIS 153
           AA+L LQ  LDR +
Sbjct: 123 AASLFLQTWLDRRN 136


>gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum
           IPO1609]
 gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum IPO1609]
          Length = 144

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
             +     + + D G KRIG+A+ +   R A     +  + V     ++   I       
Sbjct: 10  APVPLQGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVG 69

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           F++G+P++  G + P +   + F + +  R   +P  + DER ++++AQ    D   +  
Sbjct: 70  FVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122

Query: 131 KRIQKVDSIAAALILQEVLDR 151
                +D+ AA +ILQ+  D 
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141


>gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16]
 gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase
 gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia
           eutropha H16]
          Length = 141

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + L  +  + + D G K+IG+A+ +   R A     L    V      + + I   N   
Sbjct: 7   RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQ 66

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+G+P+N  G E P +   R F + + + +  +P  + DER T+ +A            
Sbjct: 67  LIVGMPVNPEGGEQPSMKLARRFGNQL-NGRFGLPVEWVDERYTSRAASMA--------G 117

Query: 131 KRIQKVDSIAAALILQEVLDR 151
            R  ++D+ AA +ILQ+  D+
Sbjct: 118 ARRGELDAEAARIILQQYFDQ 138


>gi|300775195|ref|ZP_07085057.1| Holliday junction resolvase family protein [Chryseobacterium gleum
           ATCC 35910]
 gi|300505935|gb|EFK37071.1| Holliday junction resolvase family protein [Chryseobacterium gleum
           ATCC 35910]
          Length = 138

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G  R G+A +D  +  A     +  + + +    L  + +   +   +IGL
Sbjct: 1   MGQILAIDYGKARCGIAATDDMQIIASGLETVENRSLMEF---LKKYFSENKVDEVVIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+++ G+          F+         +    +DER T+  A   +     ++KKR +K
Sbjct: 58  PIDLKGNISEVETDILKFIEEFKKEFSDIAVHRFDERFTSKMASFFISQSGKNKKKRQEK 117

Query: 136 --VDSIAAALILQEVLDR 151
             +D ++A +ILQ  L++
Sbjct: 118 GLIDKVSATIILQNFLEQ 135


>gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine
           bacterium EB0_35D03]
          Length = 142

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGL 75
           +     D+GTKR G+AI++     A     +   K  +    +L   I       FI+G+
Sbjct: 4   KTYLGFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGM 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+ +  E       R+F   + +++     +F DE L++  A++ L      +      
Sbjct: 64  PLDKDNKEQEMTFIARSFGRKL-EKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGD 122

Query: 136 VDSIAAALILQEVLDRISF 154
           VD  +A LILQ  L+  ++
Sbjct: 123 VDKRSAKLILQTWLNETTY 141


>gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164]
 gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164]
          Length = 147

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GT+++G+AI     + A+P      K        LL  +       F++GLPLN
Sbjct: 10  IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+ SE       R F   +  +   +  +  DERLTT  A+  L         R    DS
Sbjct: 70  MDESESELSARARKFARRLRHQ-TNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128

Query: 139 IAAALILQEV 148
           IAAAL+++  
Sbjct: 129 IAAALLIESW 138


>gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35243]
 gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
           35243]
          Length = 145

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 63/128 (49%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           D+G  R+G+A +      A P   L  +       EL SFI  E   A  +GLP  +NG 
Sbjct: 2   DVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNGK 61

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
           EG      R++   +  +   +P    DERL++V+A + L    VS ++  + VD +AA 
Sbjct: 62  EGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAAQ 121

Query: 143 LILQEVLD 150
            IL++ ++
Sbjct: 122 QILEQAIE 129


>gi|226942476|ref|YP_002797549.1| Holliday junction resolvase-like protein [Azotobacter vinelandii
           DJ]
 gi|259495698|sp|C1DI77|RUVX_AZOVD RecName: Full=Putative Holliday junction resolvase
 gi|226717403|gb|ACO76574.1| Holliday junction resolvase-like protein [Azotobacter vinelandii
           DJ]
          Length = 142

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GT++IG+A+       A     L  +        +   +      A ++GLPLN
Sbjct: 7   LLGFDYGTRQIGVAVGQAITGQARELCVLKAQNGVPDWSRVEQLVKEWRPDAMVVGLPLN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M+G+          F   +  R   +P    DERLTT  A+   +        R + VD
Sbjct: 67  MDGTPSEMSERAERFARRLHGR-FGLPVHTHDERLTTFEAKGYRLAQGQRDGYRRRPVD 124


>gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
 gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase
 gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
          Length = 141

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +KP   I  ID GTKRIGLA++DP + FA P       +      EL   +  + +   +
Sbjct: 1   MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTF---EPGGLHHELRRIMQGDTVDLAV 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G P+  +GS          FV  +      +     DE  ++  A +IL     SRK R
Sbjct: 58  VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117

Query: 133 IQK--VDSIAAALILQEVLDR 151
            +K  +DS AA ++L   L+ 
Sbjct: 118 REKGRLDSAAACVLLTRFLEE 138


>gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis
           MCE9]
 gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis
           MCE9]
          Length = 151

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I + D G K+IG+A+ +   + A P   +    V      + ++I   N    ++GLP+
Sbjct: 13  TILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPI 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + G E      +R F + +  R   +P    DER ++V AQ+I               D
Sbjct: 73  TLGGQEQEASRLSRKFANQLHGR-FNLPVELIDERYSSVEAQEICH-CGPDE-------D 123

Query: 138 SIAAALILQEVL 149
             AAA+IL+   
Sbjct: 124 HYAAAVILERFF 135


>gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957]
 gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957]
          Length = 144

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
             +  +  + + D G KRIG+A+ +   R A     +  + V     ++   I+      
Sbjct: 10  APVPLHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVG 69

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           F++G+P++  G + P +   + F + +  R   +P  + DER ++++AQ    D   +  
Sbjct: 70  FVVGMPVHPEGEDQPMIKLAKRFGNQLRGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122

Query: 131 KRIQKVDSIAAALILQEVLDR 151
                +D+ AA +ILQ+  D 
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141


>gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547]
 gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius
           DSM 20547]
          Length = 161

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPLNM 79
           ++D+G  R+G+A  DP    A P   +           ++  +   E     ++GLP ++
Sbjct: 4   AVDVGLARVGVASGDPDGVLATPVETVAVAPGLTALDRVVQLVRQEERSTGVVVGLPRHL 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           +G E       R +   +  R    V     DERL+TV+A + + +  V  K++  ++D 
Sbjct: 64  DGHESTSAVEARRWATALASRLGPTVRVWLVDERLSTVAASRGMREAGVRAKEQRTRIDQ 123

Query: 139 IAAALILQEVLD 150
            AA  ILQ  LD
Sbjct: 124 AAAVEILQMSLD 135


>gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis
           158L3-1]
 gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase
 gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis
           158L3-1]
          Length = 147

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTE----NIAAFII 73
             +DLG K  G AISD  +  A        ++    +    +  ++        +   I+
Sbjct: 4   LCLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDEIIL 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL M+ SE       + F   +      +P    DER +T +A+ IL     + K++ 
Sbjct: 64  GLPLRMDLSESKTTKMVKKFATVLAKNIT-LPIRLQDERQSTKNAEAILSQGGYNAKQKK 122

Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
            K DS+AA LIL++ L+R    +S+
Sbjct: 123 LKKDSLAAQLILEDYLERQHHEKSN 147


>gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 119

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 39  RFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
             A P   +             L   I        ++GLP +MNG EG R  ++R +   
Sbjct: 1   MTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRDYGTK 60

Query: 97  MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           + +    +   + DERLTT  A+++LID  V RK+R + +D +AA LILQ  LD
Sbjct: 61  LANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSIDKLAAVLILQNYLD 113


>gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
 gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
          Length = 132

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D G KR G+A++D  +  A P   L  K++         +   E ++  +IGLP+  
Sbjct: 1   MALDFGEKRTGIAVTDELQIIATPVDTLETKELFNFFET---YFAKEKVSELVIGLPMKF 57

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137
           +G   P  +  + F+         +P    +E  T+  A Q  I   + +K R     +D
Sbjct: 58  SGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKGSLD 117

Query: 138 SIAAALILQEVL 149
            I+A +ILQ  L
Sbjct: 118 KISATIILQSFL 129


>gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
 gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
          Length = 139

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
            ++DLG++  G AISD     A                  EL  +     I   I+G PL
Sbjct: 4   IALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILGYPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +GS+        +F   MI+  + +  V  DE+ +T +A+ ILI   + RKKR Q  D
Sbjct: 64  KNDGSKSQSTLRVESF-KKMIEDNIDIKVVLVDEQYSTKNAENILIFSGMKRKKRKQFKD 122

Query: 138 SIAAALILQEVL 149
            +AA LIL++ L
Sbjct: 123 KLAAQLILEDFL 134


>gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
 gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
          Length = 152

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID G  R+GLA+SDP  R A P   +  +       ELL  IT++ IAA ++G P 
Sbjct: 3   KILAIDYGQARVGLAVSDPEGRMAFPFATVAWQTRDALFRELLDVITSQGIAAIVVGYPA 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
              G E       R FV  +  R+  +P V  DE  +T  A + L +  +S      +VD
Sbjct: 63  RAGGDESLTGRQVRKFVARL-SRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSARVD 121

Query: 138 SIAAALILQEVL 149
           + AAA+IL   L
Sbjct: 122 AQAAAVILTRYL 133


>gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
           prausnitzii L2-6]
          Length = 143

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 5/144 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
            I ++D G  R GLA  D       P    +  K   + A  +            +IGLP
Sbjct: 2   KILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELIVIGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+EG R   +R      ++    +P   WDER TT +A  +L +      KR   +
Sbjct: 62  LNMDGTEGERARKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKSIL 120

Query: 137 DSIAAALILQEVLDRISFLESSKG 160
           DS++A +IL +    I + +   G
Sbjct: 121 DSVSATVILDDY---IQWRKEHPG 141


>gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
 gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
          Length = 133

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D G KRIG AI +   + A P   +  +   +   E+   I     A  ++GLP +
Sbjct: 8   ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+E       R F + +  R   +  +  DER T+           V   K  Q  D+
Sbjct: 68  PDGTEHDMTRRCRRFANQLHGR-FALDTILVDERYTSS----------VLNFKPGQADDA 116

Query: 139 IAAALILQEVLDR 151
            AAALILQ+  D 
Sbjct: 117 HAAALILQQYFDE 129


>gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_27]
 gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_27]
          Length = 138

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   ++D+G  RIG+A SD     A P   + RKKV ++   +       +    ++G+
Sbjct: 1   MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
           P +++G E  +    R ++  +      +  +  DER +TV A  IL ++N +   ++ +
Sbjct: 60  PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRK 119

Query: 135 KVDSIAAALILQEVLD 150
            VD +AA++ILQ  LD
Sbjct: 120 VVDKVAASIILQTYLD 135


>gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 140

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIGLPLNM 79
           D G  R GLA+SDP  R A P   +  +  T        L   I      A ++GLPL  
Sbjct: 2   DYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQ 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G E       R     +  R++ +PF +  E L++  A   L +  +  +KR   +D  
Sbjct: 62  DGKESLTTRQVRNVTQRL-KRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQ 120

Query: 140 AAALILQEVL 149
           AA  IL   L
Sbjct: 121 AAVRILSSFL 130


>gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
 gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
 gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
           TK-6]
          Length = 133

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D G+KRIGLA+ D     A P      +       ++ + I+   ++  I+GLPL
Sbjct: 2   KVLALDYGSKRIGLALGDTSLNIASPLGVF--ENREGVVEKIRNLISEYRVSLLIVGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              G +G R      FV  + +     +  + WDER TT  A  +L   ++   KR +  
Sbjct: 60  TPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLL--QDLPPTKRKKLK 117

Query: 137 DSIAAALILQEVLDRI 152
           DS++A +IL+E L+ +
Sbjct: 118 DSLSAYIILKEYLESL 133


>gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
 gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
          Length = 136

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G  R GLA++D  +  A     +    +      L  + T E++  F++G P  
Sbjct: 4   ILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDF---LKDYTTKESVELFLVGEPKQ 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
           MN            F+  +     ++P    DER T+  A Q +ID  + +K+R  K  V
Sbjct: 61  MNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNKALV 120

Query: 137 DSIAAALILQEVL 149
           D I+A +ILQ  L
Sbjct: 121 DEISATIILQSYL 133


>gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
 gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
          Length = 147

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID G  R+GLA++DP  R   P   L  +       ELL+ I+ + +   ++G P+
Sbjct: 3   RLLAIDYGQARVGLAVTDPEARVVFPLRTLAWETRDALFHELLAVISDQAVTRIVVGYPM 62

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
              G EG      R FV  +  R+  VP    DE  +T  A + L +   + K+ + +VD
Sbjct: 63  RAGGDEGLTGRQVRNFVSRLT-RRTTVPVELVDEAHSTEEAAERLREAGYAGKELLARVD 121

Query: 138 SIAAALILQEVL 149
           + AAA+IL+  L
Sbjct: 122 AQAAAVILERYL 133


>gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15]
          Length = 144

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
              +  +  + + D G KRIG+A+ +   R A     +  + V     ++   +      
Sbjct: 9   TAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPV 68

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            F++G+P++  G + P +   + F + +  R   +P  + DER ++++AQ    D   + 
Sbjct: 69  GFVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT- 122

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
                 +D+ AA +ILQ+  D 
Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141


>gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase
 gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
          Length = 141

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           + L  +  + + D G K+IG+A+ +   R A     L    V      + + I   N   
Sbjct: 7   RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQ 66

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            I+G+P+N  G E P +   R F + + + +  +P  + DER T+ +A            
Sbjct: 67  LIVGMPVNPEGGEQPSMKLARRFGNQL-NGRFGLPVEWVDERYTSRAASMA--------G 117

Query: 131 KRIQKVDSIAAALILQEVLDR 151
            R  ++D+ AA +ILQ+  D+
Sbjct: 118 ARRGELDAEAARIILQQYFDQ 138


>gi|114319510|ref|YP_741193.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225904|gb|ABI55703.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1]
          Length = 144

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 1/136 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +    + D G +RIG+A+ +           L  +       E+   +        ++GL
Sbjct: 6   SGTWLAFDHGDRRIGVAVGEALTGGGRALITLSARAGQPDWEEVGRLLAEWRPQGVVVGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+ +GS+     + R F   +  R   +     DERL++  A   L +      +R   
Sbjct: 66  PLHADGSDSESTRAARKFAQRLHGR-YGLRVELVDERLSSHEAAARLSERRGRPTRRPGA 124

Query: 136 VDSIAAALILQEVLDR 151
           +DS AA +IL+    +
Sbjct: 125 LDSEAARVILETWFSQ 140


>gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1]
 gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1]
          Length = 152

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  S      + + D G KRIG+A+ +   R A     +           +   I     
Sbjct: 1   MSGSNAREATLLAFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRP 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID---- 124
            A ++GLPL+ +G+        R F + + + +  +P  + DER ++V A+  L +    
Sbjct: 61  DALVVGLPLHPDGTPHEMTQQARRFGNQL-NGRFSLPVSWIDERYSSVEARAQLRERGAR 119

Query: 125 -----MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
                   +      +V       ILQ  LD++S    
Sbjct: 120 GAARGAAAAVDAEAARV-------ILQTHLDQLSDHHE 150


>gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
           3776]
 gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
           3776]
          Length = 199

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 30/168 (17%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           ++      +  +D G KR+GLAIS   +  A P     RK  +       +      +A 
Sbjct: 21  QAFPREGCLLGVDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAG 80

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--- 127
            ++GLPL+ +G E       R F   +  R   +P  FWDER T+VSA+ ++    V   
Sbjct: 81  LVVGLPLHTSGEESELSREVRQFGEWLA-RCTNLPLRFWDERYTSVSAELLMWQDGVFPR 139

Query: 128 -----------------------SRKKRI---QKVDSIAAALILQEVL 149
                                  +R K+      VD +AA +IL   L
Sbjct: 140 SGNKPASGRTSKKSPGAGHSSPQNRAKKKTPVSPVDKLAAHMILTAFL 187


>gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 136

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I ++D+G  R+G+A+ DPG R A P   L   +V   A      +        + GLP 
Sbjct: 2   RIMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLPY 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            + G EGP+    RA   + + +   +P  F DERL++  A++ L +  +  ++   K+D
Sbjct: 62  TLAGQEGPQAARIRA-AADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKID 120

Query: 138 SIAAALILQEVLD 150
            IAA+L LQ  LD
Sbjct: 121 MIAASLFLQAWLD 133


>gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
           M21/2]
          Length = 143

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
            I ++D G  R GLA  D            +  K   + A  +            +IGLP
Sbjct: 2   KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+EG R   +R      ++    +P   WDER TT +A  +L +      +R + +
Sbjct: 62  LNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEIL 120

Query: 137 DSIAAALILQEVL 149
           DS++A +IL++ L
Sbjct: 121 DSVSATVILEDYL 133


>gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
           13031]
 gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
           13031]
          Length = 143

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + +ID GTKRIG+A SDP + FA P   + R  ++     L   + ++ I   IIG 
Sbjct: 6   KKRVIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGM---LEEMLRSDEIGRVIIGY 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PL  NG           F+ +++     +     DE  ++  A++IL     SRK R   
Sbjct: 63  PLGGNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEK 122

Query: 134 QKVDSIAAALILQEVLDRIS 153
            ++DS AA ++L E L+  +
Sbjct: 123 GRIDSAAACVLLTEYLESRN 142


>gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Roseomonas cervicalis ATCC 49957]
 gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
           [Roseomonas cervicalis ATCC 49957]
          Length = 159

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M I+ + +L  +L P+Q +  +D G K IG+A++D     A P   L R K+   A E+ 
Sbjct: 1   MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           +    E     ++GLPL ++GS GP   + + +   + +    +P   WDERL++ +  +
Sbjct: 61  AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTRALSEA-TGLPAALWDERLSSSAVNR 119

Query: 121 ILI-DMNVSR 129
           +LI + +++R
Sbjct: 120 MLIQEADLTR 129


>gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037]
 gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037]
          Length = 157

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID+G  R+G+A SDP    A P   + RK   +    +++          ++GLPLN+
Sbjct: 10  LGIDVGRARVGVARSDPDGVLAVPVETVPRK--GEPVRRIVALAAEYEAFEVLVGLPLNL 67

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G +       RA     +   +  P    DERL+TVSA  +L     S++     VD +
Sbjct: 68  RGEDTASTADARA-FAQELAAALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRSIVDQV 126

Query: 140 AAALILQEVLD 150
           AA ++LQ+ LD
Sbjct: 127 AAVVLLQQALD 137


>gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
           prausnitzii SL3/3]
          Length = 143

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
            I ++D G  R GLA  D            +  K   + A  +            +IGLP
Sbjct: 2   KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGLP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           LNM+G+EG R   +R      ++    +P   WDER TT +A  +L +      +R + +
Sbjct: 62  LNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEIL 120

Query: 137 DSIAAALILQEVL 149
           DS++A +IL++ L
Sbjct: 121 DSVSATVILEDYL 133


>gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum
           GMI1000]
 gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase
 gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia
           solanacearum GMI1000]
          Length = 144

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  + + D G KRIG+A+ +   R A     +  + V     ++   +       F++G+
Sbjct: 15  HGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGM 74

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P++  G + P +   + F + +  R   +P  + DER ++++AQ    D   +       
Sbjct: 75  PVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT----DDV 125

Query: 136 VDSIAAALILQEVLDR 151
           +D+ AA +ILQ+  D 
Sbjct: 126 LDAEAARIILQQFFDE 141


>gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster
           bacterium]
          Length = 140

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 2/136 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
           Q     D+GTKR G+AI++     A     +   K  +         I+  ++  FI+GL
Sbjct: 3   QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P N +GSE       ++F   + +++  +     DE L++  A+  L   +         
Sbjct: 63  PFNKDGSEQEMTFIAKSFARKL-EKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121

Query: 136 VDSIAAALILQEVLDR 151
           VD  +A LILQ  L+ 
Sbjct: 122 VDKRSAQLILQTWLNE 137


>gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 146

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GTK IG+A+             L     T     +            I+GLPL 
Sbjct: 7   IMAFDFGTKNIGVAVGQKLTCTTTSLNVLHSIAGTPDWKNIELMYNEWKPKTLIVGLPLQ 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135
           ++GSE      ++ F   + ++        +DER TT+ A+    +   S+   K +  K
Sbjct: 67  IDGSEQYITILSKKFAIQLKNK-FNTTVEMYDERFTTLEARSNFYNQYCSKFSEKIKKNK 125

Query: 136 VDSIAAALILQEVLD 150
           +DSIAA +IL+  L+
Sbjct: 126 IDSIAAEIILKSWLN 140


>gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase
 gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 144

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D GTK IG+AI       A P   L  +        +     T     F++GLPL 
Sbjct: 10  VMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLK 69

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR----KKRIQ 134
           ++GSE P     + F   +      VP    DER +T  A+  L            +   
Sbjct: 70  IDGSEQPITILAKIFAIQL-KELFPVPVKMHDERFSTSEAR--LNYFKYYHDDLCARSNI 126

Query: 135 KVDSIAAALILQEVLDR 151
           K+++IAA +IL+  L++
Sbjct: 127 KINAIAAGVILKSWLNK 143


>gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia
           floridanus]
 gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase
 gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus
           Blochmannia floridanus]
          Length = 142

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D GTK+IG+AI             L  K       ++            I+GLPL 
Sbjct: 8   IMAFDFGTKKIGIAIGQKITGTTQSLEILPSKFGIPNWKKIEHIFNVWKPNKLIVGLPLK 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
           MNG+       ++ F   +  R   +     DER TT+ A+ I         +K+   +D
Sbjct: 68  MNGNTQHITLLSKRFAVQLTHR-FKITVEMHDERFTTIEARSIYFQHFRYYYRKKTTPID 126

Query: 138 SIAAALILQEVLDR 151
           SIAA +IL+  L++
Sbjct: 127 SIAAEIILKSWLNQ 140


>gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
           Broad-1]
 gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
           Broad-1]
          Length = 156

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIGL 75
             +D G  RIG+A SDP    A P   +  KK       L + +            ++GL
Sbjct: 7   LGLDPGDARIGVARSDPTGFLATPLETV--KKGRGDLARLQAIVAEIGEESTMLEVVVGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P ++ G E P     R F  ++  R   VP    DERLTTVSA+ +L D     + R   
Sbjct: 65  PRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDRRAV 124

Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
           VD  AA +ILQ  LD      ++ G
Sbjct: 125 VDMAAAVVILQHALDSERASGAAPG 149


>gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
           43183]
 gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
           43183]
          Length = 152

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID+G+ RIG+A SDP    A P   + R K       +   +        I+GLP ++
Sbjct: 3   LGIDVGSVRIGVARSDPAGILATPLETVRRGKG--DLDRIAELVAEHEAVEVIVGLPTSL 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           +G  GP     R F   +  R   +        +DERLTTV+A+  L    V  K R Q 
Sbjct: 61  SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120

Query: 136 VD 137
           VD
Sbjct: 121 VD 122


>gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 163

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK----VTQTALELLSFITTEN--IAAFII 73
             +DLG  R+G+A S+P R FA+P   +        V    L+L+     E   + A  I
Sbjct: 6   LGLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTAIAI 65

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQI 121
           GLPL M+GS G      + +  ++  R              +P  +F DERLTTV A + 
Sbjct: 66  GLPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDAHRR 125

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           L D NVS K+    VD  +A  ILQ  LDR  
Sbjct: 126 LFDANVSSKQHRAVVDQQSAVEILQTALDRAR 157


>gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 135

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +   D G KRIG+A+ +   R A     +           +   + +   A  I+G+
Sbjct: 1   METVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGM 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P + +G+E       R F + +  R   +P V  DER T+           V  ++R ++
Sbjct: 61  PFHPDGAEHEMSVRCRRFANQLHGR-YGLPTVLVDERYTSA----------VLGQQRGER 109

Query: 136 VDSIAAALILQEVLD 150
           +D  AAALILQ+  D
Sbjct: 110 IDDRAAALILQQYFD 124


>gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
           20595]
          Length = 153

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 32  AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
           A  D     A P     R++       ++  +   +    I+GLP NM+GSEG    + R
Sbjct: 19  ARCDTAGILATPVATYRRER--DDFSSVIELVREADALEVIVGLPRNMDGSEGKSAKNAR 76

Query: 92  AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            +   +  R   V     DERLTTVSA Q+L +           VD +AA +IL+  L +
Sbjct: 77  RWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEINHRSVVDQVAAVIILESALAQ 136


>gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 164

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 63/148 (42%), Gaps = 12/148 (8%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------ALELLSFITTEN 67
           P  P   +DLG  RIGLAISD G  FA P   L R                L   +    
Sbjct: 4   PLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEHR 63

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           IA  ++G P N+ G       +   FV  +      VP    DER+TT+ A + L +  V
Sbjct: 64  IALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAGV 123

Query: 128 S-----RKKRIQKVDSIAAALILQEVLD 150
           S     RK +   VD +AA  ILQ  LD
Sbjct: 124 SGKRLVRKGQRGVVDQLAATAILQGWLD 151


>gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
 gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
          Length = 134

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+SDP +  A P   L RK   +T  ELL  +  + +   ++G+P+N 
Sbjct: 1   MALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINA 60

Query: 80  NGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            G +         F       + +R   +P    DE  +T  A+++   +     K  ++
Sbjct: 61  QGEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEE 116

Query: 136 VDSIAAALILQEVLD 150
           +D  AAALIL+E L+
Sbjct: 117 LDDYAAALILKEWLE 131


>gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
 gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
          Length = 163

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G+ RIG+A SDP    A P   + R +       +            ++GLP ++
Sbjct: 7   IGVDVGSVRIGVARSDPSGVLAVPVETVRRGR--DDLDRIAEIAAEHEAIEVVVGLPTSL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G E     + R +   +  R   +P    DERLTTV+AQ+ L    +  +++   +D  
Sbjct: 65  SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124

Query: 140 AAALILQEVLD 150
           AA  +LQ  LD
Sbjct: 125 AAVELLQAALD 135


>gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
 gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
          Length = 140

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
             +DLG+   G++ S      AH    +    +   +   ++L+ I  E     ++G PL
Sbjct: 5   LGLDLGSVTCGVSAS-ETGLIAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVLGYPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            +NG  GPR   +      +++ +  +P    DER TTV A++IL+  ++SRKKR +K+D
Sbjct: 64  LLNGDVGPRAQLSEE-FKEVLEEECGLPVHLMDERFTTVEAEEILLQADISRKKRKKKID 122

Query: 138 SIAAALILQEVLDRI 152
            +AA  ILQ  LDRI
Sbjct: 123 QLAAVQILQYYLDRI 137


>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 187

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 1   MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
           M +L  E+L + L     K    +  +D+G+K +GLA+SD   R A P   L R K    
Sbjct: 1   MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60

Query: 56  --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
             A +  + +   ++A  ++G P N+ G   P        V  +    +   + + +WDE
Sbjct: 61  LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120

Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153
             T+   + +L  +N++ R +     D  AA  ILQ  LD ++
Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163


>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 199

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 1   MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
           M +L  E+L + L     K    +  +D+G+K +GLA+SD   R A P   L R K    
Sbjct: 13  MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72

Query: 56  --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
             A +  + +   ++A  ++G P N+ G   P        V  +    +   + + +WDE
Sbjct: 73  LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132

Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153
             T+   + +L  +N++ R +     D  AA  ILQ  LD ++
Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175


>gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           R3021]
 gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae
           R3021]
          Length = 134

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D GTK IG AI       A   P    +        +   +        I+GLPLNM
Sbjct: 6   LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           +G+E       R F + +  R   V     DERLTT  A+  + +    +  + 
Sbjct: 66  DGTEQDLTLRARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKK 118


>gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45]
 gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45]
          Length = 146

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFIIGL 75
            S DLGTK  G AISD     A+    +            ++   I      I AF++G 
Sbjct: 4   LSFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVKEIIKMYQNSIDAFVLGY 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL  NGS+  R      F   + +    +     DE  +T+ AQ+IL D  +S KK   K
Sbjct: 64  PLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKTKSK 123

Query: 136 VDSIAAALILQEVL 149
            D+++A +IL + L
Sbjct: 124 KDTVSAVIILNDFL 137


>gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
           45221]
 gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
           45221]
          Length = 153

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID G KRIGLA +D     A P P  V     +    +   I    +   ++G PLNM
Sbjct: 4   LGIDWGEKRIGLAFADEVG-IALPLPAAVAVSKKERMRHIEQMIQERRVRELVVGYPLNM 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +GS G +     AF+  + +++  +P    DERL++ S +Q L        ++  ++DS 
Sbjct: 63  DGSVGFKAKEVDAFIEEL-EKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121

Query: 140 AAALILQEVLDRISFLE 156
           AAALILQ+ ++     E
Sbjct: 122 AAALILQDFIEEKRLNE 138


>gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
 gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase
 gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
          Length = 145

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               ID GT+RIGLA  D     A P P LV     +    LL+      +   ++G PL
Sbjct: 2   RCLGIDYGTRRIGLAYGDELG-VATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHPL 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+ + GP+     A    +      V     DERLT+  A+  +        +    +D
Sbjct: 61  NMDDTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVID 120

Query: 138 SIAAALILQEVLDR 151
           S AA LILQ+ LD+
Sbjct: 121 SRAATLILQDFLDQ 134


>gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
           bacterium DG1235]
 gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
           bacterium DG1235]
          Length = 149

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               +D G +R+G+A  D     A P   +V+    +    L+          F+ G P 
Sbjct: 2   RCIGVDYGERRVGVAFGDDIG-VATPLQAIVKATEEERIQALVDLARERRATDFVFGYPY 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NMNGS G +     AF+  ++   + +P    DERLT+V A +          +R  K+D
Sbjct: 61  NMNGSVGFKAKEVDAFIDKLLKA-IDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKID 119

Query: 138 SIAAALILQEVLDR 151
           S+AA+LILQ+ L++
Sbjct: 120 SVAASLILQDYLNQ 133


>gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
 gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase
 gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
          Length = 146

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFIIGL 75
            S DLGTK  G AISD     A+    +           +++   I      I AF++G 
Sbjct: 4   LSFDLGTKTCGFAISDILEISANALETIRFVENDFNAVIVKVKEIIKMYQNSIDAFVLGY 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL  NGS+  R      F   + +    +     DE  +T+ AQ+IL D  +S KK   K
Sbjct: 64  PLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKTKSK 123

Query: 136 VDSIAAALILQEVL 149
            D+++A +IL + L
Sbjct: 124 KDTVSAVIILNDFL 137


>gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila
           UNI-1]
 gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila
           UNI-1]
          Length = 152

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I ++D G  RIGLAISDP    A     +        A  +    T + +   I+G 
Sbjct: 2   KGRILAVDPGDVRIGLAISDPTGTIARALGVIHHVARAIDAATIAQIATEQGVVRIIVGQ 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            L+ +G   P+   +       I ++  +P   WDE  +T  AQ     M V RK+R   
Sbjct: 62  ALDDHGLPTPQGRKSARLAEA-IQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGH 120

Query: 136 VDSIAAALILQEVLD 150
           +D +AA +ILQ+ L+
Sbjct: 121 LDDLAAVIILQDYLE 135


>gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
 gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
          Length = 137

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G  R+G+A SD     A P   L  ++V   +      +        + G PL M
Sbjct: 4   LALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRPLTM 63

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G +GP+          +      +P  F DERL++  A++IL +   S +    +VD +
Sbjct: 64  AGEDGPQADRVMGQARRIAT-SCDLPLEFADERLSSQEAKRILREEGYSERDMRGRVDMV 122

Query: 140 AAALILQEVLD 150
           AA+L LQ  LD
Sbjct: 123 AASLFLQAWLD 133


>gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 132

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           D G KR G+A++DP +  A     +      +    L S++  E +   +IG P  M+ S
Sbjct: 2   DYGQKRTGIAVTDPLQMIASGLTTVQ---TPELLDFLESYMGEEQVERIVIGEPRRMDNS 58

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKVDSIA 140
                   R+F+  +  R   +P    DER ++  A + +I+  +   +++    VD I+
Sbjct: 59  PSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKIS 118

Query: 141 AALILQEVL 149
           A LILQ  L
Sbjct: 119 ATLILQSYL 127


>gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
           16992]
          Length = 151

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             IDLG  R+GLA+SDPG   A+P   + V     +   E++  I  E +   I+GLPL 
Sbjct: 4   LGIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPLL 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126
           ++G EG      R +  N+  R              VP     DERLTTV+A   L D  
Sbjct: 64  LSGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDAQ 123

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
           +   +    VD  +A +ILQ  +DR  
Sbjct: 124 IGGHEHRPMVDQQSAVVILQTAIDRRK 150


>gi|145588432|ref|YP_001155029.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046838|gb|ABP33465.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 138

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +  +  + + D GT+R+G+A+ +   +       +         LE+ S +        +
Sbjct: 1   MPKSITVMAFDYGTRRVGVAVGNSVTQLGQALKTIAAANSEILFLEVASLLKEWQPDQLV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G PL+ +G+          F + +      +P  + DER T+      +++ +    K 
Sbjct: 61  VGRPLHPDGTPHEMTAKASRFGNQL-HGHFALPVSWVDERYTS-----AILEGD---AKM 111

Query: 133 IQKVDSIAAALILQEVL 149
              +D+ +AALIL++  
Sbjct: 112 QDNLDAHSAALILEQYF 128


>gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50]
 gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase
 gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
 gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50]
          Length = 143

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
           Q I ++D+G+K IGLA S      A     +  +     Q   +L S++   N    ++G
Sbjct: 3   QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRKK 131
            P NMN + G R       +   +D          +  DER TT  A+ ILI  N++R+K
Sbjct: 61  YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIRIDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           + +  DS+AA LIL+  L+   
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142


>gi|149926767|ref|ZP_01915027.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105]
 gi|149824696|gb|EDM83912.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105]
          Length = 144

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D G KRIG+A  +   + A     +  +   Q   ++ S +        ++G+P   
Sbjct: 14  LAFDFGLKRIGVAFGNSLTKTASGIAVVEAQNDEQRFAKIESLVKEWQPEGLVVGVPRQP 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G++         F   + + +  +P    DER T+   +  +     + ++   +VD  
Sbjct: 74  DGADNELTTRCERFARQL-EGRFALPCAMVDERYTSAIIESCM--GGKAARENKGRVDMG 130

Query: 140 AAALILQEVL 149
           +A LIL++  
Sbjct: 131 SACLILEQFF 140


>gi|261855953|ref|YP_003263236.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2]
 gi|261836422|gb|ACX96189.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2]
          Length = 165

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 4/138 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGL 75
               + D G  RIG+A+ +     A P   L  +   Q     +   +        ++G 
Sbjct: 8   GTWLAFDYGAWRIGVAVGEQMLGSARPLTTLHHRNAHQIQWDAIGQLLDEWRPVGLVLGW 67

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
           PL  +G   P     R F   + D +  +P  + DERL++  AQ +L   +   K +   
Sbjct: 68  PLMDSGETYPVAEFIRRFGRRL-DGRFNLPVRYVDERLSSEHAQMLLTTRHGKDKVKKSP 126

Query: 134 QKVDSIAAALILQEVLDR 151
             +D+ AAA+IL+    +
Sbjct: 127 SMIDAQAAAIILETFFSQ 144


>gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 143

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
           Q I ++D+G+K IGLA S      A     +  +     Q   +L S++   N +  ++G
Sbjct: 3   QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
            P NMN + G R       +    +M         +  DER TT  A+ ILI  N++R+K
Sbjct: 61  YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNEDQIIKIDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           + +  DS+AA LIL+  L+   
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142


>gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS]
 gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS]
          Length = 133

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
           G K IG+A+SDP R  A P   L R    +T   + + + T      ++GLP+++NG+ G
Sbjct: 2   GDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTIG 61

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
           P+    +AF   ++ + +    VF DER +T  A++ + D   + K       +   A+I
Sbjct: 62  PQAEKVKAFSG-LLSQSLDTEIVFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118

Query: 145 LQEVLDRIS 153
           LQ+ LD  +
Sbjct: 119 LQDYLDETN 127


>gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis
           OL]
 gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis
           OL]
          Length = 138

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
            I  +D+G  R+G+AISDP +  A P   +  K       EL       +I   +IG P 
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELKN-KDLFDELDKIFQRYSIEKVVIGYPL 60

Query: 77  --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             L+ +  +  ++          I  +  V  V WDER +T + ++++ +  ++ K++ +
Sbjct: 61  SKLHPDLKD-EKLKKIDEISEK-IGSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKK 117

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ  LD
Sbjct: 118 VIDKVAAVYILQGYLD 133


>gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM
           265]
 gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
           265]
          Length = 142

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + +  ID GTKRIGLA++DP R FA P     R+ +     E+      + IA  ++G 
Sbjct: 3   KKRLVGIDYGTKRIGLAVADPLRIFARPVGTFSREGLQGALEEIE---RQDGIATLVVGY 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           PL+  G           F+  + +    V     DE  ++  A  IL     SRK R   
Sbjct: 60  PLSSGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKK 119

Query: 134 QKVDSIAAALILQEVLDRIS 153
            ++D+ AA ++L   L+  S
Sbjct: 120 GRLDTAAACVLLTRYLEESS 139


>gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase
 gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 143

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
           Q I + D+G+K IGLA S      A     +  +     Q   +L  ++   N +  ++G
Sbjct: 3   QSIIAFDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
            P NMN + G R       +    +M         +  DER TT  A+ ILI  N++R+K
Sbjct: 61  YPKNMNNTIGERAEMVDYVIEMFLDMYKSFNKDQIIKVDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           + +  DS+AA LIL+  L+   
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142


>gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
 gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
          Length = 200

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------TALELLSFITTENI 68
             P   IDLG  RIGLAISDP   FA P   L R                L   +    I
Sbjct: 41  RGPRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRI 100

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
           A  ++G P N+ G       +   FV  + +    VP    DER+TT+ A + L +  VS
Sbjct: 101 ALVVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVS 160

Query: 129 -----RKKRIQKVDSIAAALILQEVLD 150
                RK +   VD +AA  ILQ  LD
Sbjct: 161 GKRLVRKGQRGVVDQLAATAILQGWLD 187


>gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction
           resolvase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 143

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
           Q I ++D+G+K IGLA S      A     +  +     Q   +L S++   N +  ++G
Sbjct: 3   QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRKK 131
            P NMN + G R       +   +D          +  DER TT  A+ ILI  N++R+K
Sbjct: 61  YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIKIDERRTTKIAKNILIQANLTREK 120

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           + +  DS+AA LIL+  L+   
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142


>gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER]
 gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64]
 gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER]
 gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64]
          Length = 144

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
            ++DLGTK  G AISD G   A     L            ++  +  T  I   ++G PL
Sbjct: 4   LALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             N +   R     +F H +            +E  TT++A  IL +  +S KKR    D
Sbjct: 64  RSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKAHKD 123

Query: 138 SIAAALILQEVLDR 151
           +++A LILQE L+ 
Sbjct: 124 TLSAVLILQEFLNY 137


>gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 132

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID GTKR+GLAI D     A P+  L  +        +   + ++ +   ++GLPL
Sbjct: 2   KIIAIDFGTKRVGLAIGDTDLGIAVPKGVL--RNDANLLDRIEDIVRSKGVKKVVVGLPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G EG R    R F   +  R   V    WDER +T+ A+  L D  +  ++R + +D
Sbjct: 60  TPSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRD--LPPRRRREVLD 117

Query: 138 SIAAALILQEVL 149
           +I+A +IL+E L
Sbjct: 118 AISAQIILEEYL 129


>gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542]
 gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM
           10542]
          Length = 167

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---------TALELLS 61
           ++L+       +D+G+ R+G+A+SDP    A P   L R  VT              L  
Sbjct: 5   QALERGAR-LCVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAE 63

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
            +    +    +GLP +++G+EG    S RA+   +      VP    DER++TV+A Q 
Sbjct: 64  QVVERGVKVVYVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQA 123

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
           L     + +K    VD +AA +ILQ  LD
Sbjct: 124 LHASGRAGRKHRAVVDQVAAVVILQSALD 152


>gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32]
 gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei
           U32]
          Length = 133

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 32  AISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
           A+SDP    A P   L R         +L + +T   +   I+GLP  +   +GP     
Sbjct: 2   ALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAELA 61

Query: 91  RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            A+   +  R   VP    DERLTTV+A +IL    V  +K+   VD  AA  ILQ  +D
Sbjct: 62  IAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWID 121

Query: 151 RISFLESSKG 160
             +   + +G
Sbjct: 122 AAAAHRAREG 131


>gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 145

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
            ++DLGTK  G AISD G   A     L            ++  +  T  I   ++G PL
Sbjct: 5   LALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPL 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             N +   R     +F H +            +E  TT++A  IL +  +S KKR    D
Sbjct: 65  RSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKAHKD 124

Query: 138 SIAAALILQEVLDR 151
           +++A LILQE L+ 
Sbjct: 125 TLSAVLILQEFLNY 138


>gi|94311674|ref|YP_584884.1| Holliday junction resolvase-like protein [Cupriavidus metallidurans
           CH34]
 gi|146325596|sp|Q1LJR1|RUVX_RALME RecName: Full=Putative Holliday junction resolvase
 gi|93355526|gb|ABF09615.1| putative Holliday junction resolvase (YqgF-like) [Cupriavidus
           metallidurans CH34]
          Length = 149

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 13/157 (8%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+  + + L +    +  + + D G K+IG+A+ +   R A     L    V      + 
Sbjct: 1   MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVG 60

Query: 61  SFITTENIAAFIIGLPLN----MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
             I        ++G+P+N     +  E P +   R F + + + +  +P  + DER ++ 
Sbjct: 61  ELIRQWTPVRLVVGMPVNPEAGPDDEEQPSMRLARRFGNQL-NGRFNLPVEWVDERYSSR 119

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           +A        ++  KR   +D+ AA +ILQ+  D + 
Sbjct: 120 AAA-------MAGAKR-GALDAEAARIILQQYFDELP 148


>gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
 gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase
 gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
          Length = 131

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D GTKR+GLAI D   +   P+  +      +   ++   +    +   I+GLPL
Sbjct: 2   KVLAVDYGTKRVGLAIGDEELKIVSPKGTV---SSKEAVKKIKEIVEKSRVGKVIVGLPL 58

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G EG R    + FV  + +       + WDER TT  A + L    +  KK+ +  D
Sbjct: 59  TPSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELKD 116

Query: 138 SIAAALILQEVLDRI 152
            I+A +IL+E L+ +
Sbjct: 117 VISAMIILEEYLNSV 131


>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 141

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + ++D+G K+IG+A+SDP    A+P   + RK   +T  +LL  I   ++   IIG+
Sbjct: 1   MKRVMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGI 60

Query: 76  PLNMNGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           P++  G E       + F       + +R   +  VF DE  +++ A+++   +    K 
Sbjct: 61  PISSEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLG---KT 117

Query: 132 RIQKVDSIAAALILQEVL 149
             +++D IAAAL+L+E L
Sbjct: 118 EKEEIDDIAAALMLKEWL 135


>gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae]
 gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae]
          Length = 146

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTEN--IAAFIIGL 75
            + DLGTK  G AISD     A+    +            ++  +I      I AF++G 
Sbjct: 4   LAFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQYQNSIDAFVLGY 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL  NG++  R      F   +      +     DE  +T+ AQ+IL D+  S KK   K
Sbjct: 64  PLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKKTKSK 123

Query: 136 VDSIAAALILQEVL 149
            D+++A +IL + L
Sbjct: 124 KDTLSAVIILNDFL 137


>gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
 gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
          Length = 186

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENIAAFI 72
            ++D+G+ R+GLA SDP    A P   L R       ++V      ++        A   
Sbjct: 12  LAVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGAAVVY 71

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP +++G+EG    + RA+   +      VP    DER++TV+A Q L     S ++ 
Sbjct: 72  VGLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRSGRRH 131

Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
            Q VD  AA +ILQ  LD         G
Sbjct: 132 RQVVDQAAAVVILQYALDAERATGRRPG 159


>gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J]
 gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448]
          Length = 130

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 27  KRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
           K  G AISD   + ++P       R         +  ++    I+  ++G PL + G   
Sbjct: 2   KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
           PR      F  +++ +   +  VF DERLTT  AQ  L+D+ +S KKR + +D +AA +I
Sbjct: 62  PRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120

Query: 145 LQEVLD 150
           L+  L+
Sbjct: 121 LERFLN 126


>gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
 gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
          Length = 142

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G KR GLA+SD  + FA     +  K +     EL   ++ E I   +IG 
Sbjct: 1   MSKILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTL---MDELKKLVSKEKITEIVIGE 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P  ++ S+     + R     +      V     DER T+  A  ++    + +K R   
Sbjct: 58  PKRLDTSDSHITQNVRLLKEAVQKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117

Query: 134 QKVDSIAAALILQEVL 149
             +D+++A +ILQ+ L
Sbjct: 118 GLIDTVSATIILQDYL 133


>gi|294341151|emb|CAZ89552.1| putative holliday junction resolvase [Thiomonas sp. 3As]
          Length = 137

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D G KRIG A+ +   R A     L   +       + + I        ++GLPL
Sbjct: 14  TVLGFDWGAKRIGTAVGNSLTRSATALRTLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F   + + +  +P    DER T+V+A+              + VD
Sbjct: 74  HPDGAAHDNTAHAQRFARQL-EGRFRLPVALVDERYTSVAAED----------DGAKDVD 122

Query: 138 SIAAALILQEVLDR 151
           S AA LI+++ L +
Sbjct: 123 SAAAQLIVEQYLQQ 136


>gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
 gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
          Length = 154

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G +RIG+A  + G  FA  R  + R+ +      + +    E  A  ++GLP  
Sbjct: 5   VLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGLPRR 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKV 136
           + G +  +    RAF   +  +   +  VF DER T+  A Q L+   + R +R    +V
Sbjct: 65  LRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEKGRV 122

Query: 137 DSIAAALILQEVL 149
           D  AA LIL+  L
Sbjct: 123 DEGAAVLILETYL 135


>gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 142

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLN 78
              D+GTKR G+AI++     A     +   K   T  +     I+  NI  F++GLP N
Sbjct: 7   LGFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGLPFN 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E       ++F + + +R   +   F DE L++  A+++L   +     +   VD 
Sbjct: 67  QQGKEQTMTFIAKSFGNKLKNR-YQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRDDVDK 125

Query: 139 IAAALILQEVLDRISF 154
            ++ LILQ  L+   F
Sbjct: 126 QSSQLILQTWLNEKRF 141


>gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase
 gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase
 gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 155

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 4/143 (2%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++P+  +   D+G++RIG+A+       A     +         + L         A
Sbjct: 4   AGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPA 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMN 126
             ++G PL ++  + P      AF   + +R   +P V  DER ++V A Q         
Sbjct: 64  GLVVGDPLTLDDKDQPARKRAHAFARELRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
             R++    +D++AAA+I++  L
Sbjct: 123 RKRRRDADTLDAMAAAVIVERWL 145


>gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 138

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
            I  +D+G  R+G+AISDP +  A P   +  +       EL S     +I   +IG P 
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDSIFQRFSIEKVVIGYPL 60

Query: 77  --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             L+ +  +  ++          I  +  V  V WDER +T + ++++ +  ++ K++ +
Sbjct: 61  SKLHPD-QKDEKLKKIDEISEK-IKSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKK 117

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ  LD
Sbjct: 118 VIDKVAAVYILQGYLD 133


>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 542

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
                +D+G K +GLAISDP    A P   L+RKK      A +  + +   +++  ++G
Sbjct: 394 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVG 453

Query: 75  LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
            P   +N  E   V +   F+  +   ++   V + +WDERL++ + + +L  +N+   +
Sbjct: 454 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 511

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
               +D +AA +ILQE LD  +
Sbjct: 512 EKTMLDKLAAVVILQEYLDYAN 533


>gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 142

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLP 76
                D+GTKR G+AI++     A     +   K   T  +EL   I + NI  FI+GLP
Sbjct: 5   TYLGFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLP 64

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            +  G E       ++F   + +R   +   F DE L++  A+++L   +     +   V
Sbjct: 65  FDKQGKEQIMTFIAKSFGKKLKNR-YQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRGNV 123

Query: 137 DSIAAALILQEVLDRISF 154
           D  ++ LILQ  L+   F
Sbjct: 124 DKQSSQLILQTWLNEKKF 141


>gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195]
 gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase
 gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides
           ethenogenes 195]
          Length = 133

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
           G K IG+A+SDP R  A P   L R    +T   + + + T      +IGLP+++NG+ G
Sbjct: 2   GDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTIG 61

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
           P+    +AF   ++ + +    +F DER +T  A++ + D   + K       +   A+I
Sbjct: 62  PQAEKVKAFSG-LLSQSLNTEIIFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118

Query: 145 LQEVLDRIS 153
           LQ+ LD  +
Sbjct: 119 LQDYLDETN 127


>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
          Length = 548

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
                +D+G K +GLAISDP    A P   L+RKK      A +  + +   +++  ++G
Sbjct: 400 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVG 459

Query: 75  LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
            P   +N  E   V +   F+  +   ++   V + +WDERL++ + + +L  +N+   +
Sbjct: 460 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 517

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
               +D +AA +ILQE LD  +
Sbjct: 518 EKTMLDKLAAVVILQEYLDYAN 539


>gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641]
 gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum
           DSM 15641]
          Length = 140

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + S+D+G  R G+AISDP  R A P   L   +V   A      +        + GLPL
Sbjct: 2   RVLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            ++GS G +    RA    + D    +P  F DERL++  A+++L +  ++ +    K+D
Sbjct: 62  TLSGSSGGQAQRIRAQAQQIAD-TSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKID 120

Query: 138 SIAAALILQEVLDRISF 154
            IAA++ LQ  LDR   
Sbjct: 121 MIAASIFLQAWLDRQRA 137


>gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54]
          Length = 133

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        + + +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           L L+ +G E P     R F + +  R   V     DER +++ AQ++L            
Sbjct: 62  LALDADGGEQPATARCRRFANQLHGR-FGVAVELVDERGSSMEAQRLLGTHAADDAMAAA 120

Query: 135 KVDSIAAALILQEVLDR 151
                    ILQ  LD+
Sbjct: 121 V--------ILQRYLDK 129


>gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1]
 gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
 gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
 gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase
 gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
 gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
 gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
          Length = 133

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
           G K IG A+SDP R  A P   L R   T+T   + S + T      IIGLP+++NG+ G
Sbjct: 2   GDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTIG 61

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
           P+    ++F   ++ R + +  ++ DER +T  A++ + D   + K       +   A+I
Sbjct: 62  PQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118

Query: 145 LQEVLDRIS 153
           LQ+ LD  +
Sbjct: 119 LQDYLDETN 127


>gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis]
 gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC
           23114]
          Length = 144

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTEN----IAAF 71
            I ++DLGTK  G AISDP    A        +         ++L ++        I   
Sbjct: 2   RILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKVLHYLNKSEYQGSIGTI 61

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++G PL M+ S+  R +    F   +  + V +P VF DER +T+ AQ+IL     + KK
Sbjct: 62  VLGYPLRMDLSKSQRTYMVERFGERL-KKVVDIPVVFQDERQSTIGAQEILQSAGWNTKK 120

Query: 132 RIQKVDSIAAALILQEVLDRISF 154
              K DS+AA LIL++ L  I +
Sbjct: 121 SKSKKDSLAAQLILEDYLKGIKY 143


>gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
           KB13]
 gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
           KB13]
          Length = 161

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 2/153 (1%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M+ L   DL +  K    + + DLG K+ G+A+ +   + +        K   Q   ++ 
Sbjct: 1   MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             +        ++GLP N + S               I++ + +P  F +E  ++ SA++
Sbjct: 61  QLVNEWQPIYLVLGLPSNRDSSANETTKFCLNTAKE-IEKNINLPIFFVNENYSSTSAEE 119

Query: 121 ILIDMNVSR-KKRIQKVDSIAAALILQEVLDRI 152
           ++ D+   + K  I  VD IAA +ILQ   + +
Sbjct: 120 LIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152


>gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
 gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
          Length = 133

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D G+ R G A+SDP    A P   + R    +    L++ +    +   ++GLPL
Sbjct: 2   RVLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            ++G++  +    RAF   + +     +P   +DER TTV A+++            +  
Sbjct: 62  GLSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRESE 112

Query: 137 DSIAAALILQEVL 149
           DS AAA++L+  L
Sbjct: 113 DSRAAAVLLEGWL 125


>gi|332530313|ref|ZP_08406259.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC
           19624]
 gi|332040299|gb|EGI76679.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC
           19624]
          Length = 136

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           +      Q   ++D G KR G+A+ +   + A P+  + R +      ++   I      
Sbjct: 1   MAVTAAQQTFLALDFGLKRTGVAVGNRLLKQAQPQATI-RAEGDARFTQIAERIREWQPD 59

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           A ++G+P + +G+        R F   +  R   +P    DER +T  A    I      
Sbjct: 60  ALVVGVPFHPDGAAHDNTERARKFARQLRGR-FGLPVHEVDERYSTTEA----IAEGGGG 114

Query: 130 KKRIQKVDSIAAALILQEVL 149
           K+     D+ AA +IL++ L
Sbjct: 115 KRFDA--DAGAACVILEQFL 132


>gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I]
 gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase
 gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS]
          Length = 133

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        +   +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL ++G E P     R F + +      +     DER +++ AQQ+L            
Sbjct: 62  LPLTLDGQEQPASARARRFANQL-HGHFGLAVELVDERSSSMEAQQLLGTHADDDAVAAA 120

Query: 135 KVDSIAAALILQEVLDRIS 153
                    ILQ  LD +S
Sbjct: 121 V--------ILQRYLDTLS 131


>gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis]
          Length = 167

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 16/163 (9%)

Query: 1   MSILLIEDL------VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
           M++L ++ L      V  ++P   +  +D+GT  +G+A+SDP    A P+  L+R    +
Sbjct: 1   MAVLTVKQLQSLYSKVAHIRP--RLLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLR 58

Query: 55  TALE--LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDE 111
                 L+  +      AF++GLPL  +G E  +    + F+H   +  ++ +P VF DE
Sbjct: 59  PFKSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDE 118

Query: 112 RLTTVSAQ---QILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
             +T  A    +     + +R  R +  D  AAA+ILQ  LD 
Sbjct: 119 WGSTQMAMDDYRYQKKRDWNRGLRKK--DENAAAIILQSFLDS 159


>gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
 gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
           6BC]
 gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1]
 gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
           6BC]
 gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
 gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci
           6BC]
          Length = 150

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
             +D G KRIGLA +      + P  F+   K  +   +LL   I   N++  ++G P+ 
Sbjct: 11  LGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIP 70

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
           M   +   +      + +++     V  + WDERL++  A+++L  D  +SRKKR  K D
Sbjct: 71  MQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTD 130

Query: 138 SIAAALILQEVLDRISFL 155
           SIAA LIL   L+    L
Sbjct: 131 SIAANLILTSFLESSPHL 148


>gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822]
 gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50]
 gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase
 gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase
 gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 133

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        +   +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPL ++G E P     R F + +  R   +     DER +++ AQQ+L            
Sbjct: 62  LPLTLDGQEQPASARARRFANQLHGR-FGLAVELVDERGSSMEAQQLLGTHAADDAVAAA 120

Query: 135 KVDSIAAALILQEVLDRIS 153
                    ILQ  LD + 
Sbjct: 121 V--------ILQRYLDTLP 131


>gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
           acid binding / recombinase [Arabidopsis thaliana]
 gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
 gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 170

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
                +D+G K +GLAISDP    A P   L+RKK      A +  + +   +++  ++G
Sbjct: 22  GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVG 81

Query: 75  LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
            P   +N  E   V +   F+  +   ++   V + +WDERL++ + + +L  +N+   +
Sbjct: 82  YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 139

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
               +D +AA +ILQE LD  +
Sbjct: 140 EKTMLDKLAAVVILQEYLDYAN 161


>gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
           DSM 7109]
 gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
           DSM 7109]
          Length = 143

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                  ++D+G+ RIG+A+SDP    A P   +           ++  I    +   I+
Sbjct: 21  PGRGRRLALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIV 80

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           GLP+ + G+      +   F  ++ +    +P    DER++T++A Q      VS KK
Sbjct: 81  GLPVALRGNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKK 138


>gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium
           1_1_47]
 gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium
           1_1_47]
          Length = 144

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           ++ L  +  + + D G KRIG+A+ +   + A P   +  KK  Q   E+   ++    A
Sbjct: 1   MERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPA 60

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           A ++G+P + +G           F  N ++ +  +P V  DER ++V A+      +   
Sbjct: 61  AVVVGVPRHKDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAESYHDADDDEP 119

Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
                      AA+IL + L+++ 
Sbjct: 120 IDDEA------AAIILDQWLNKVP 137


>gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
 gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase
 gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
          Length = 173

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G K++G+A+ +     A     L           LL  I    +A  ++GLPLN
Sbjct: 25  ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVGLPLN 84

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY--VPFV--FWDERLTTVSAQQILIDMNVSRKKRIQ 134
           M+GS          F   +  R +   +P +    DERLT+V+A++I  +    + +R  
Sbjct: 85  MDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHER-A 143

Query: 135 KVDSIAAALILQEVL 149
            +D I+A +++    
Sbjct: 144 PIDDISACILMSTYF 158


>gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 138

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
            I  +D+G  R+G+AISDP +  A P   +  +       EL       NI   +IG P 
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYPL 60

Query: 77  --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             L+ +  +  ++          I+ +  V  V WDER +T + +++ ID  ++ K++ +
Sbjct: 61  SKLHPD-QKDEKLKKIDEISEK-IESRYNVEIVKWDERFSTKAVERV-IDEELNWKRKKK 117

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ  LD
Sbjct: 118 IIDKVAAVYILQGYLD 133


>gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 141

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  ID G    GL+I+DP ++FA     +  K +      L   I  + I   +IGLP 
Sbjct: 3   RILGIDYGKVITGLSITDPLQKFAFGLNAIPTKNLMSF---LAILIAKKPIKKIVIGLPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-IQKV 136
            +N        S + F+     +   +  V  DER T+  A   +I++ + +K+R    +
Sbjct: 60  TLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRRQKGLI 119

Query: 137 DSIAAALILQEVL 149
           + I+A +ILQ  L
Sbjct: 120 NKISATIILQSYL 132


>gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae
           GPIC]
 gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase
 gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae
           GPIC]
          Length = 163

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFI 72
           K  +    ID G +RIGLA +      + P   +      +   ++L + I   +++  +
Sbjct: 7   KKEKTFLGIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVV 66

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
           +G P+ M   +   +      + ++I     V  + WDERL++  A+++L  D  +SRKK
Sbjct: 67  LGNPIPMQKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKK 126

Query: 132 RIQKVDSIAAALILQEVLDR 151
           R  K D+IAA LIL   L+ 
Sbjct: 127 RKGKTDTIAATLILTSFLES 146


>gi|296136975|ref|YP_003644217.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12]
 gi|295797097|gb|ADG31887.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12]
          Length = 137

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D G KRIG A+ +   R A     L   +       + + I        ++GLPL
Sbjct: 14  TVLGFDWGAKRIGTAVGNSLTRSATALRSLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +G+        + F   + + +  +P    DER T+V+A+              + VD
Sbjct: 74  HPDGAAHDNTAHAQRFARQL-EGRFRLPVALVDERYTSVAAED----------DGAKDVD 122

Query: 138 SIAAALILQEVLDR 151
           S AA LI+++ L +
Sbjct: 123 SAAAQLIVEQYLQQ 136


>gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
           6725]
 gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase
 gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
           6725]
          Length = 138

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
            I  +D+G  R+G+AISDP +  A P   +  +       EL       NI   +IG P 
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYPL 60

Query: 77  --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             L+ +  +  ++          I  +  V  V WDER +T + +++ ID  ++ K++ +
Sbjct: 61  SKLHPD-QKDEKLKKIDEISEK-IGSRYNVEIVKWDERFSTKAVERV-IDEELNWKRKKK 117

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ  LD
Sbjct: 118 IIDKVAAVYILQGYLD 133


>gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella
           excrementihominis YIT 11859]
 gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella
           excrementihominis YIT 11859]
          Length = 150

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           +  ++ L  +  + + D G KRIG+A+ +   + A P   +  KK  Q   E+   ++  
Sbjct: 4   QSALERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDW 63

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
             AA ++G+P + +G           F  N ++ +  +P V  DER ++V A+      +
Sbjct: 64  QPAAVVVGVPRHKDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAESYHDADD 122

Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
                         AA+IL + L+++ 
Sbjct: 123 DEPIDDEA------AAIILDQWLNKVP 143


>gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
           14884]
          Length = 141

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIGLA  D   RFA  R +L R  +      + +F   E     ++GLPL
Sbjct: 2   KVVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +GS   +       V  +  R+  +     DER TT  AQ  +  +   +++   ++D
Sbjct: 62  RTDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRLD 119

Query: 138 SIAAALILQEVL 149
             AA  IL+  L
Sbjct: 120 EAAAVAILETYL 131


>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 138

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
            I  +D+G  R+G+AISDP +  A P   +  +       EL       +I   +IG P 
Sbjct: 2   RILCLDMGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQRYSIEKVVIGYPL 60

Query: 77  --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             L+ +  +  ++          I  +  V  V WDER +T + +++ I+  ++ K++ +
Sbjct: 61  SKLHPD-QKDEKLKKIDEISEK-IKSRYNVEIVKWDERFSTKAVEKV-INGELNWKRKKK 117

Query: 135 KVDSIAAALILQEVLD 150
            +D +AA  ILQ  LD
Sbjct: 118 VIDKVAAVYILQGYLD 133


>gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens
           T118]
 gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase
 gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118]
          Length = 156

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 12/133 (9%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   ++D G KR G A+ +   R A P+  +  +      +++   +      A ++G+P
Sbjct: 33  QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAE-GDARFVKIALQLKEWQPDALVVGVP 91

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+        R F   +  R   +P    DER TT  A        + R  R    
Sbjct: 92  FHPDGAAHENTLRARRFARQLQGR-FKLPVFEVDERYTTTEA--------LGRGARDA-- 140

Query: 137 DSIAAALILQEVL 149
           D++AA +IL++ L
Sbjct: 141 DAMAACIILEQFL 153


>gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4]
 gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase
 gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 177

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           ++KP   I ++D G K++G+A+ +     A     L           LL  I    +A  
Sbjct: 23  AIKP-HLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKV 81

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFV--FWDERLTTVSAQQILIDMNV 127
           ++GLPLNM+GS          F   +  R +   +P +    DERLT+V+A++I  +   
Sbjct: 82  VVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGW 141

Query: 128 SRKKRIQKVDSIAAALILQEVL 149
            + +R   +D I+A +++    
Sbjct: 142 IQNER-DPIDDISACILMSTYF 162


>gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
 gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
          Length = 157

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
              + + S+D+G KRIGLA  DP      P P + R +  Q    L +  TT  + A ++
Sbjct: 4   PKPRSVLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL+  G    +      +   +  + + +P  + +E  ++ +A +           R 
Sbjct: 64  GLPLDDKGQRTAQAEHCERYGRRLA-QTLALPLAWVNEHSSSWAAGESRNLHG----DRS 118

Query: 134 QKVDSIAAALILQEVL 149
            ++DS AAAL+L++ L
Sbjct: 119 GRLDSEAAALLLEQWL 134


>gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601]
 gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase
 gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. AS9601]
          Length = 153

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+GTKRIGLA  DP    ++  P + R +  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+G+PL+  G    +    + +   ++  ++ +PF + +E  +T  + +        
Sbjct: 61  TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GI 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +K +   +DS +A +IL++ ++    LE   G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147


>gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 136

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G K+IG+A SD  +  A       R+ +++    L   +      + +IGLP  +
Sbjct: 1   MCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTI 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +  E         F + +I +   V     DE L+T  A   L    +S  K  +  D I
Sbjct: 61  DEQETEWCKVIIQFANKIIKK-CKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKI 119

Query: 140 AAALILQEVLDRISFLE 156
           AA +ILQ  LD+I+ ++
Sbjct: 120 AACIILQRTLDKINAIK 136


>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
          Length = 224

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 2   SILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58
            + L  DL+K        +  +D+G K +GLA+SD   + A P   L+RKK      A +
Sbjct: 61  PVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATD 120

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
             S I+  ++A FI+G P N   S  P   + + F+ ++    +   V + +WDE  T+ 
Sbjct: 121 FQSLISDLSLAGFIVGYPFNRQRS-SPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSK 179

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + + +L  +N+   +    +D  AA  ILQ  LD ++ +
Sbjct: 180 NVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNRI 218


>gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 169

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 2   SILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58
            + L  DL+K        +  +D+G K +GLA+SD   + A P   L+RKK      A +
Sbjct: 6   PVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATD 65

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
             S I+  ++A FI+G P N   S  P   + + F+ ++    +   V + +WDE  T+ 
Sbjct: 66  FQSLISDLSLAGFIVGYPFNRQRS-SPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSK 124

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           + + +L  +N+   +    +D  AA  ILQ  LD ++ +
Sbjct: 125 NVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNRI 163


>gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1]
 gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase
 gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1]
          Length = 142

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
              I  +D+G+K IGLA S      A     L  +     +    L  FI  ++   F+ 
Sbjct: 1   MSNILGLDVGSKTIGLASS--TGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVF 58

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRK 130
           G P NMNGS G R      F+   +     +     +  DER TT  A+ I+I+  +SR+
Sbjct: 59  GYPKNMNGSIGERAEMVDYFIEGFMVYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQ 118

Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
           K+ +  D++AA LIL+  L++I 
Sbjct: 119 KQKENKDTLAAQLILETYLEKIK 141


>gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM
           16511]
 gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM
           16511]
          Length = 130

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 5/133 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           IA++D+G KRIG+AIS P  R   P+  + R+   Q A EL  F+    +   ++GLP  
Sbjct: 2   IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            + SE       R FV ++++    +   + DE  ++  A++ +      R+KR  ++DS
Sbjct: 61  GS-SEEEMERRIRHFV-SLLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116

Query: 139 IAAALILQEVLDR 151
           +AA +IL+  L+R
Sbjct: 117 LAAQIILERWLER 129


>gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
           NATL2A]
 gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase
 gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
           NATL2A]
          Length = 144

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + S+D+G KRIG+A  DP        P + R    +   E         +   I G PL
Sbjct: 8   SVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG E  +    + +   +    + +P  F +E  +TV A++        +  +  ++D
Sbjct: 68  DMNGMETKQSIRCKKYGIKLAK-CLKLPLAFINEHCSTVEAKEKFS----LKNDKTGRID 122

Query: 138 SIAAALILQEVL 149
           S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134


>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
 gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
          Length = 168

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 2   SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALEL 59
            I L  DL+KS K N  +  +D+G K +GLAISD   + A P   L+RKK      A + 
Sbjct: 6   PIALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDF 64

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVS 117
            S I+  ++A F++G P +   S  P     + F+ ++    +   + + FWDE  T+ +
Sbjct: 65  QSLISELSLAGFVVGYPFDRQRS-TPDALHVKLFIDDLRKIGKLEGLKYTFWDECFTSKN 123

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
            + ++  +++   +    +D  AA  ILQ  LD ++
Sbjct: 124 VELLVQPLDLHPVEAKTIMDKFAAVGILQGYLDYVN 159


>gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca
           volvulus]
          Length = 136

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G K+IG+A SD  +  A       RK +++    L          + +IGLPL  
Sbjct: 1   MCLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKDLGYLNRVFKENEAGSVVIGLPLET 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           N        +   F   M+ +   V     DE L+T  A   L    VS  K  +  D I
Sbjct: 61  NRKSSEWYETIIQFATKMVKK-YKVNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119

Query: 140 AAALILQEVLDRISFLE 156
           +A +ILQ  LD+I+ ++
Sbjct: 120 SACIILQRTLDKINAIK 136


>gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath]
 gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase
 gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus
           str. Bath]
          Length = 151

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                    D G + IG+A+       A P   L  +   +    +   I     A  ++
Sbjct: 8   SRGATYLGFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVV 67

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR- 132
           GL    +GSE P    T  F   + + +  +P    DE LTT  A+         R+K  
Sbjct: 68  GLSHQQDGSENPITAPTLRFCRQL-EGRYRLPVYTVDETLTT--AESRTHFYQRRRRKSV 124

Query: 133 --IQKVDSIAAALILQEVL 149
              Q  D +AA LILQ   
Sbjct: 125 EFEQVKDEMAAQLILQTWF 143


>gi|255535831|ref|YP_003096202.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342027|gb|ACU08140.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium
           3519-10]
          Length = 141

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 5/141 (3%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++    I ++D G  R G+A +D  +  A     +  K +      L  +    N+   +
Sbjct: 1   MRTMAQILAVDYGKARCGIAATDDFQIIASGLDTVETKNIFTF---LAGYFAANNVELVV 57

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +GLP ++ G+          F+     +   V    +DER T+  A   +     ++KKR
Sbjct: 58  VGLPTDLKGNLSSIETDIAKFLEKFKTQFPTVKTERFDERFTSKMASFYISQSGKNKKKR 117

Query: 133 --IQKVDSIAAALILQEVLDR 151
                +D ++A LILQ  L++
Sbjct: 118 EEKGLIDKVSATLILQNFLEQ 138


>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
 gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
 gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
 gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 178

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 1   MSILLIEDLVKS-----LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
           M +L  + L +       +    +  +D+G+K +GLA+SD   R A P   L R K   +
Sbjct: 1   MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60

Query: 56  --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
             A + ++ ++  ++A F++G P N+ G   P     R  V  +    +   + + +WDE
Sbjct: 61  LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120

Query: 112 RLTTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
             T+   + +L  + +    +     D  AA  ILQ  LD ++
Sbjct: 121 NFTSKCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 163


>gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa
           Temecula1]
 gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23]
 gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase
 gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase
 gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase
 gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23]
 gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 155

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  +   D+GT+RIG+A+       A     +    V      L            ++G
Sbjct: 9   PDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
            PL + G + P      AF   + +R   +P V  DER ++V A             R++
Sbjct: 69  DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127

Query: 132 RIQKVDSIAAALILQEVL 149
               +D+IAAA+IL+  L
Sbjct: 128 DADTLDAIAAAVILERWL 145


>gi|171463061|ref|YP_001797174.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|226731636|sp|B1XT83|RUVX_POLNS RecName: Full=Putative Holliday junction resolvase
 gi|171192599|gb|ACB43560.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 147

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 13  LKPNQPI-----ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           LKP   I      + D GT+R+G+A+ +   +   P   +          ++   +    
Sbjct: 2   LKPMALITPITAMAFDYGTRRVGVAVGNSVTKAGEPLKTIAAPNSDTLFKDIEQLLAEWQ 61

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
               ++G P + +G+          F + +  R   +P  + DER T+      +++ + 
Sbjct: 62  PNQLVVGHPTHPDGAPHEMTAKAIRFGNQLHGR-FQLPVAWVDERYTS-----AVLEGD- 114

Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
              +    +D+ +A LIL++    +
Sbjct: 115 --AQMRDNLDAHSATLILEQYFSEL 137


>gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
 gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase
 gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 148

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENI 68
           + S+K  +    +D G KRIGLA +        P   +     +  TA  L++ I    +
Sbjct: 1   MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
              + G PL M  S    V S    +  ++     +  + WDERL++  A+++L  D  +
Sbjct: 61  TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120

Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
           SRK+R    DS+AA LIL   LD   
Sbjct: 121 SRKQRKNSSDSLAATLILSSFLDSRK 146


>gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855]
 gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8]
 gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase
 gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM
           13855]
 gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8]
          Length = 143

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           + +L     +  ID+GTKR+G+A++DP R FA P          +    L +    + IA
Sbjct: 1   MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTYA---PDEALDVLQALRDADGIA 57

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS- 128
             ++G PL   G+         A+V  + +    V     DER T+  A+ +L +  VS 
Sbjct: 58  RIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVSQ 117

Query: 129 -RKKRIQKVDSIAAALILQEVLDR 151
             +    +VD+ AAA+ILQ  L+R
Sbjct: 118 PGRYDKGRVDAAAAAVILQGFLNR 141


>gi|313207140|ref|YP_004046317.1| holliday junction resolvase yqgf [Riemerella anatipestifer DSM
           15868]
 gi|312446456|gb|ADQ82811.1| Holliday junction resolvase YqgF [Riemerella anatipestifer DSM
           15868]
 gi|315022462|gb|EFT35489.1| Putative Holliday junction resolvase [Riemerella anatipestifer
           RA-YM]
          Length = 137

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G  R G+A +D  +  A     +   ++      L  +I    + A ++G 
Sbjct: 1   MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSF---LSEYIHNNAVEAVVVGY 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+++ G+      S   F+     +   +     DER T+  A   +     ++K+R +K
Sbjct: 58  PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSGKNKKQRQEK 117

Query: 136 --VDSIAAALILQEVLDRIS 153
             +D I+A +ILQ  L++  
Sbjct: 118 GLIDKISATIILQNFLEQKR 137


>gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301]
 gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase
 gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301]
          Length = 153

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+G+KRIGLA  DP    ++  P + R +  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+G+PL+  G    +    + +   ++  ++ +PF + +E  +T  + +        
Sbjct: 61  TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GI 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +K +   +DS +A +IL++ ++    LE   G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147


>gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58]
 gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum
           E58]
          Length = 146

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
             +D G KR+GLA +      + P   + R K +      L   I   +++  I+G P+ 
Sbjct: 11  LGVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIP 70

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVD 137
           M G++   +    A     +     +  + WDERL++  A+++L  D  +SRK+R  K D
Sbjct: 71  MYGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTD 130

Query: 138 SIAAALILQEVLDRI 152
           ++AA LIL   L+R 
Sbjct: 131 TLAATLILSSFLERC 145


>gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
 gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
          Length = 135

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIGLA+ + G  FA  R +LVR+ + +    LL F+  E +A  I+GLPL
Sbjct: 2   RLGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +  E  +       V  +  R   V    WDER TT +A   L       ++   K+D
Sbjct: 62  RTDLKESAQAKRVLPLVEALRAR--GVEVELWDERYTTKAAMARLRHAPRRVREDKGKLD 119

Query: 138 SIAAALILQEVLDR 151
            ++A ++L+  L R
Sbjct: 120 EMSAVVLLEGYLAR 133


>gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27]
 gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8]
 gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase
 gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase
 gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27]
 gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 135

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIGLA+ + G   A  R +LVRK + +    LL F+  E +   ++GLPL
Sbjct: 2   RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +  E  +       V  +  R   V    WDER TT  AQ+ L       ++   K+D
Sbjct: 62  RTDLKESAQAGKVLPLVEALRAR--GVEVELWDERFTTKLAQERLKHAPKRLRRDKGKLD 119

Query: 138 SIAAALILQEVLDR 151
            +AA ++L++ L R
Sbjct: 120 ELAAVVLLEDYLAR 133


>gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c]
 gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 155

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  +   D+GT+RIG+A+       A     +    V      L            ++G
Sbjct: 9   PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
            PL + G + P     +AF   + +R   +P V  DER ++V A             R++
Sbjct: 69  DPLTLEGHDQPIRKQAQAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127

Query: 132 RIQKVDSIAAALILQEVL 149
               +D+IAAA+IL+  L
Sbjct: 128 DADTLDAIAAAVILERWL 145


>gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9215]
 gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase
 gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9215]
          Length = 153

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+G KRIGLA  DP    ++  P + R K  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+G+PL+  G    +    + +   ++  ++ +PF F +E  +T  +          
Sbjct: 61  TGFIVGIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRF----GI 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +K +   +DS +A +IL++ ++    LE   G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147


>gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7
           single-cell isolate TM7c]
          Length = 134

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +  +D+G KRIG+A++D G + A P   +          ++L     EN    ++G P 
Sbjct: 4   RLLCLDVGEKRIGVAVADLGVKIAIPLTTIEVDGTE--IEQILRLYGRENARTLVVGYPR 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N  G    +      FV  + +   Y+   F DE LT+V A+Q L      +      +D
Sbjct: 62  NQQGETTAQTVFVEEFVKPLEE---YINIEFQDESLTSVQAEQRLKSRG--QNYTKGDID 116

Query: 138 SIAAALILQEVLD 150
           S AA +ILQ+ ++
Sbjct: 117 SEAATIILQDYME 129


>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
          Length = 178

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
             +  +D+G + +GLA+S+     A P   L+RK+    +   +L   +   ++  F+IG
Sbjct: 22  GRLLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRFSLVGFVIG 81

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
            PL +   +  +    + FV  +    R   + + +WDERLTT + + +L  + +   + 
Sbjct: 82  YPLPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKPLKIHPLQM 141

Query: 133 IQKVDSIAAALILQEVLDRISF 154
              +D  AA  ILQ+ LD +  
Sbjct: 142 KHMMDKFAAVGILQDFLDNLQH 163


>gi|319795847|ref|YP_004157487.1| holliday junction resolvase yqgf [Variovorax paradoxus EPS]
 gi|315598310|gb|ADU39376.1| Holliday junction resolvase YqgF [Variovorax paradoxus EPS]
          Length = 141

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 13  LKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           + P+ Q   + D G KR G+A  +   + A P+  +  +       ++ + I      A 
Sbjct: 12  VPPHFQTFLAFDFGLKRTGVASGNRLLQSATPQATIKAE-GDARFAQVEARIKEWQPDAL 70

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           +IG+P + +G+        + F   +  R   +     DER +T  A        +S   
Sbjct: 71  VIGVPYHPDGAPHENTRRAQKFARQLRGR-FNLQVFEVDERYSTTEA--------LSSGA 121

Query: 132 RIQKVDSIAAALILQEVL 149
           R    D+ +A +IL++ L
Sbjct: 122 RDA--DAASACIILEQFL 137


>gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
 gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
          Length = 152

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G  RIG+A SDP    A P   + R         +++ +        ++GLP ++
Sbjct: 7   VALDIGDARIGVASSDPHGILATPVETVRR--GPGDLDRIVTLVADLEAFEIVVGLPRSL 64

Query: 80  NGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           NG EGP     RA        +  R+V       DER TTV+A+++L +      KR   
Sbjct: 65  NGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRERGKKGSKRRAV 124

Query: 136 VDSIAAALILQEVLD 150
           VD  AA +ILQ  LD
Sbjct: 125 VDQAAAVVILQHALD 139


>gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter
           xylosoxidans A8]
 gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter
           xylosoxidans A8]
          Length = 133

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        + + +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           L L+  G E P     R F + +  R   +     DER +++ AQ++L            
Sbjct: 62  LALDAEGGEQPATARCRRFANQLHGR-FGLAVELVDERGSSMEAQRLLGTHAADDAMAAA 120

Query: 135 KVDSIAAALILQEVLDRISF 154
                    ILQ  LD +  
Sbjct: 121 V--------ILQRYLDTLPA 132


>gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
           ATCC 43553]
 gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
           ATCC 43553]
          Length = 136

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + +   D G K+IG+AI +   R A P   +  +        + + +        ++G
Sbjct: 5   PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           L L+ +G E       R F + +  R   +     DER +++ AQ++L            
Sbjct: 65  LALDADGGEQAATARCRRFANQLHGR-FGIAVELVDERGSSMEAQRLLGTHAADDAMAAA 123

Query: 135 KVDSIAAALILQEVLDRISF 154
                    ILQ  LD +  
Sbjct: 124 V--------ILQRYLDTLPA 135


>gi|237654352|ref|YP_002890666.1| Holliday junction resolvase-like protein [Thauera sp. MZ1T]
 gi|237625599|gb|ACR02289.1| Holliday junction resolvase YqgF [Thauera sp. MZ1T]
          Length = 168

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
            +L     +   D G  RIG+A  +     A     +  +        +   I      A
Sbjct: 22  DTLPARGTVLGFDFGLARIGVASGELETGLASALTTVHAEANDARFAAIARLIAEWRPVA 81

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR- 129
            ++G+P +++G E       R F + +  R   +P    DERL++V+A+  L +      
Sbjct: 82  LVVGIPTHLDGREHELTARCRRFANQLHGRHA-LPVFTADERLSSVAAEAELAEAGRKDW 140

Query: 130 KKRIQKVDSIAAALILQEVLDRISF 154
           ++R   +D+ AA ++LQ  LD    
Sbjct: 141 RERKAALDAAAARILLQTFLDTRRH 165


>gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
 gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
 gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
 gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis
           46P47B1]
 gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis
           103P14B1]
 gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
 gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis
           12P80B1]
 gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
 gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
 gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
 gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
 gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis
           101P30B1]
          Length = 158

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D G K++G+A+ +     A P   L           LL  I    I   ++GLPLNM
Sbjct: 8   LALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNM 67

Query: 80  NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           +G+E         F   +     +R+  V    +DERL++  A+ I +D         + 
Sbjct: 68  DGTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALDNGWI-ASSSEP 126

Query: 136 VDSIAAALILQEV 148
           +D IAA L+L   
Sbjct: 127 IDDIAACLLLDSY 139


>gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 138

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
                 +DLGTKRIG+A+       A P   +  +   +    L   + +   +  ++GL
Sbjct: 6   GGRALGVDLGTKRIGVAV--AEGSLALPLEVIDARGPWR--ARLAELVASVGASVVVVGL 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+ ++GSEG      R +   + +  + VP VF DERL++ +A++ L    V  + R   
Sbjct: 62  PIGLDGSEGRAAARVRQWSEGLAE-HLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGA 120

Query: 136 VDSIAAALILQEVL 149
           VD+ AA  IL+  L
Sbjct: 121 VDAFAATEILERWL 134


>gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           A/HAR-13]
 gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           6276]
 gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           6276s]
 gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase
 gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase
 gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX]
 gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13]
 gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/9768]
 gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/11222]
 gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/11074]
 gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           G/9301]
 gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
 gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
          Length = 148

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFI 72
           K  Q    ID G KRIGLA +        P   +  R  +T TA  L+S I    +   +
Sbjct: 5   KQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVV 64

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
            G PL M  +    V S    +  +I     +  + WDERL++  A+++L  D  ++RK+
Sbjct: 65  FGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQ 124

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           R    DS+AA LIL   LD   
Sbjct: 125 RKNPSDSLAATLILSSFLDSRK 146


>gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
 gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12]
 gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase
 gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
 gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
 gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12]
          Length = 155

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P+  +   D+GT+RIG+A+       A     +    V      L            ++G
Sbjct: 9   PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
            PL + G + P      AF   + +R   +P V  DER ++V A             R++
Sbjct: 69  DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127

Query: 132 RIQKVDSIAAALILQEVL 149
               +D+IAAA+IL+  L
Sbjct: 128 DADTLDAIAAAVILERWL 145


>gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
 gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum
           Weiss]
 gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum
           MopnTet14]
          Length = 145

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAF 71
           +K  +    +D G KRIGLA +        P   +     +  TA  L++ I    +   
Sbjct: 1   MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
           + G PL M  S    V S    +  ++     +  + WDERL++  A+++L  D  +SRK
Sbjct: 61  VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120

Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
           +R    DS+AA LIL   LD   
Sbjct: 121 QRKNSSDSLAATLILSSFLDSRK 143


>gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           434/Bu]
 gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70]
 gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           70s]
 gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           D(s)2923]
 gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           L2tet1]
 gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase
 gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase
 gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis]
 gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
 gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis
           Sweden2]
 gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           E/150]
 gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
           E/11023]
          Length = 148

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFI 72
           K  Q    ID G KRIGLA +        P   +  R  +T TA  L+S I    +   +
Sbjct: 5   KQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVV 64

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
            G PL M  +    V S    +  +I     +  + WDERL++  A+++L  D  ++RK+
Sbjct: 65  FGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQ 124

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           R    DS+AA LIL   LD   
Sbjct: 125 RKNSSDSLAATLILSSFLDSRK 146


>gi|121997730|ref|YP_001002517.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1]
 gi|121589135|gb|ABM61715.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1]
          Length = 142

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
            P   +   D G + IG+A+ +     A     L  +        +   +      A ++
Sbjct: 4   PPGGTLLGFDPGARHIGVAVGEALLGTARGLTTLPARHGQPDWEAVSELLAQWTPEALVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           GLP + +GS+       R     +  R   +P    DERL++  A++ L      R
Sbjct: 64  GLPSHADGSDADSTELARRLAGRLHGR-FGLPVHTVDERLSSHVAEERLDPRQRQR 118


>gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           F]
          Length = 142

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFIIG 74
            ++D+G+K +G+A  D   + A P   +   +      + L+ +  +  +      F+IG
Sbjct: 4   VALDVGSKTLGIATGDGEFKIASPYCVISFNQY--DFKQCLAELKEKTASFFYDFKFVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P N++ ++         F+  ++        + +DE  T++ A Q+LID  +  KKR +
Sbjct: 62  MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120

Query: 135 KVDSIAAALILQEVLDRISF 154
           K+D +AA +ILQ   D   +
Sbjct: 121 KIDKLAAFVILQSFFDDDRY 140


>gi|241764785|ref|ZP_04762793.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN]
 gi|241365715|gb|EER60411.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN]
          Length = 143

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A      + A P+P +  +       ++   I      A +IG+P
Sbjct: 19  QTFLAFDFGLKRTGVATGSRLLKSATPQPTIKAE-GDARFAQVAQRIKEWQPDALVIGVP 77

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +     DER +T  A    I             
Sbjct: 78  YHPDGASHENTERALKFGRQLRGR-FGLQVFEVDERYSTTEA----IASGAKDA------ 126

Query: 137 DSIAAALILQEVL 149
           D+ +A +IL++ L
Sbjct: 127 DAASACIILEQFL 139


>gi|260220095|emb|CBA27290.1| Putative Holliday junction resolvase [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 147

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 6   IEDLVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
           + D    + P      + D G KR G+A+ +   R A P+  +  +        + + + 
Sbjct: 11  MSDATPLVPPAFTTFIAFDFGLKRTGVAVGNRLMRTAQPQGSIHAE-GNARFDGVAAKLK 69

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
                A +IG+P + +G+        + F   +  R   +     DER +T  A    I 
Sbjct: 70  EWQPDAIVIGVPYHPDGAPHENTARAKKFGRQLQGR-FGLQVFEVDERYSTTEA----IA 124

Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149
                       D+++A +IL++ L
Sbjct: 125 SGAKDA------DAMSACIILEQFL 143


>gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           CWL029]
 gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           J138]
 gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           TW-183]
 gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase
 gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183]
 gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae
           LPCoLN]
          Length = 151

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
           +    ID G KRIGLA +        P   +   K +  +A  L   I + NI   ++G 
Sbjct: 8   KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 67

Query: 76  PLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
           PL M  G               +  +   V  + WDERL++V A+++L  D  +SRK R 
Sbjct: 68  PLPMQKGLYSSLQEEVSLLAEEL-KKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRK 126

Query: 134 QKVDSIAAALILQEVLDRIS 153
            K DS+AA LIL   LD + 
Sbjct: 127 GKTDSLAATLILTSFLDSLP 146


>gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma
           australiense]
 gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma
           australiense]
          Length = 140

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
             +DLG K +G+A+S      A     L     +  Q    L   I    I   I+G P 
Sbjct: 1   MGLDLGEKTLGIALS-ETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPK 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MN   G +   +  F   +      V  + WDERL+TV + +IL   N  +KK     D
Sbjct: 60  HMNNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKD 119

Query: 138 SIAAALILQEVLD 150
            IAA +ILQ  LD
Sbjct: 120 VIAATIILQNYLD 132


>gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus
           S26/3]
 gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase
 gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3]
          Length = 150

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 20  ASIDLGTKRIGLA-------ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
             +D G +RIGLA       IS P    A        K +  TA  L+  I    ++  +
Sbjct: 11  LGVDYGERRIGLAYAAYPLGISLPIGFIATG------KTLEATAKLLVGIIQERRVSTVV 64

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
           +G PL M   +   +      + +++     V  + WDERL++  A+++L  D  +SRKK
Sbjct: 65  LGNPLPMQKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKK 124

Query: 132 RIQKVDSIAAALILQEVLDRISFLES 157
           R  K DSIAA LIL   L+    L S
Sbjct: 125 RKGKTDSIAATLILTSFLEHSPRLPS 150


>gi|326315675|ref|YP_004233347.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372511|gb|ADX44780.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 150

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A+     R A P+  +  +        +   +      A ++G+P
Sbjct: 25  QSFLAFDFGAKRTGVAVGTRMLRTATPQATIRAEGADARFAAVAERLRDWQPDALVVGVP 84

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 85  YHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEAHAGGAKDADAA------- 136

Query: 137 DSIAAALILQEVLDRIS 153
              +A +IL++ L ++ 
Sbjct: 137 ---SACIILEQFLRQLP 150


>gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A]
 gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase
 gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. NATL1A]
          Length = 144

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + S+D+G KRIG+A  DP        P + R    +   E         +   I G PL
Sbjct: 8   SVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +MNG E  +    + +   +    + +P  F +E  +T+ A++        +  +  ++D
Sbjct: 68  DMNGMETKQSIRCKKYGIKLAK-CLKLPLAFINEHCSTLEAKEKFS----LKNDKTGRLD 122

Query: 138 SIAAALILQEVL 149
           S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134


>gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
           AR39]
 gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
          Length = 154

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
           +    ID G KRIGLA +        P   +   K +  +A  L   I + NI   ++G 
Sbjct: 11  KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 70

Query: 76  PLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
           PL M  G               +  +   V  + WDERL++V A+++L  D  +SRK R 
Sbjct: 71  PLPMQKGLYSSLQEEVSLLAEEL-KKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRK 129

Query: 134 QKVDSIAAALILQEVLDRIS 153
            K DS+AA LIL   LD + 
Sbjct: 130 GKTDSLAATLILTSFLDSLP 149


>gi|239817577|ref|YP_002946487.1| Holliday junction resolvase-like protein [Variovorax paradoxus
           S110]
 gi|239804154|gb|ACS21221.1| Holliday junction resolvase YqgF [Variovorax paradoxus S110]
          Length = 153

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A  +     A P+  +  +       ++ + I      A ++G+P
Sbjct: 29  QSFLAFDFGLKRTGVASGNRLLGAATPQATIKAE-GDARFAQVEARIKEWQPDALVVGVP 87

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+        + F   +  R   +     DER +T  A    +             
Sbjct: 88  YHPDGAPHENTRRAQKFARQLRGR-FNLQVFEVDERYSTTEA----LASGARDA------ 136

Query: 137 DSIAAALILQEVLDRIS 153
           D+ +A +IL++ L  I 
Sbjct: 137 DAASACIILEQFLRSIP 153


>gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1]
          Length = 136

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     + + F    I ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQNFETDITKAAKDFAKE-IQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 124

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 49/116 (42%)

Query: 45  PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
             +  + +      L + +        +IGLP ++NG EGP     R F   +  R   V
Sbjct: 2   ETVPGRDIPAAHKRLAAIVAEYEPIEVVIGLPRSLNGREGPAAAKVRTFARELARRVQPV 61

Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
                DER+TTV+A   L    VS KK    VD  AA +ILQ  L+       + G
Sbjct: 62  SVRLVDERMTTVTAAHGLRASGVSSKKGRSVVDQAAAVVILQSALETERASGRAPG 117


>gi|289209567|ref|YP_003461633.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
 gi|288945198|gb|ADC72897.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
          Length = 130

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + + D G +RIG+A+ +     A     L      +    +   ++      F++G P  
Sbjct: 3   LLAFDYGRRRIGIAVGEELTGAARGLRTL-NTDSPELWPVIDRLVSEWAPEGFVVGWPTQ 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G   P     RAF   + + +   P  ++DE LT+  A++        R +    +D+
Sbjct: 62  ADGKPTPLAKRIRAFGAAL-EARYNQPVYWYDEHLTSHLARER-----SGRGRHDPGLDA 115

Query: 139 IAAALILQEVL 149
            AAA+IL+   
Sbjct: 116 HAAAVILEGWF 126


>gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
           6946]
          Length = 135

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + IAS+D+G KRIG+A+         P+  ++RK   Q A E+ +F+T   I   ++GL
Sbjct: 1   MKKIASLDVGLKRIGVALCLASG-IVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGL 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   + SE         FV  +         V+ DE  +++ A++++    + R+KR  K
Sbjct: 60  PKGGS-SEEEMKRRITHFVSLLA---FSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGK 113

Query: 136 VDSIAAALILQEVLD 150
           +DSIAA +IL+  LD
Sbjct: 114 IDSIAAKVILERYLD 128


>gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone HF10-88D1]
          Length = 153

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 6/152 (3%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+GTKRIGLA  DP    ++  P + R +  Q    + ++I   N+
Sbjct: 1   MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+G+PL+  G    +    + +   ++ R++ +PF + +E  +T  +          
Sbjct: 61  TGFIVGIPLDEEGQMTTQAIDCKKYGQ-LLSRELMLPFSYVNEHSSTWESSYRF----GI 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +K +   +DS +A +IL++ +     LE   G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIAEGPELEEIAG 147


>gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9312]
 gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase
 gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
           9312]
          Length = 153

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S D+G KRIGLA  DP    ++  P + R +  +    + + I   N+
Sbjct: 1   MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+GLPL+  G   P+      +   ++  ++ +PF + +E  +T  +          
Sbjct: 61  TGFIVGLPLDEKGKMTPQAIDCMNYGQ-LLSNELKLPFSYVNEHSSTWESSNRF----GI 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +K +   +DS AA +IL++ +     LE   G
Sbjct: 116 KKDKSGLIDSFAAKVILEQWIKEGPELEELAG 147


>gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM
           12804]
 gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase
 gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii]
          Length = 131

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
           P + + + D G K+IG+AI +   R A P   +  +        +   +        ++G
Sbjct: 2   PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRVVVG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           L L  +G E P     R F + +  R   +     DER +++ AQ++L            
Sbjct: 62  LALASDGGEQPATARCRRFANQLRGR-YGLAVELVDERGSSMEAQRLLGTHAPDDAVAAA 120

Query: 135 KVDSIAAALILQEVLDRIS 153
                    ILQ  LD + 
Sbjct: 121 V--------ILQRYLDALP 131


>gi|120609602|ref|YP_969280.1| Holliday junction resolvase-like protein [Acidovorax citrulli
           AAC00-1]
 gi|120588066|gb|ABM31506.1| Holliday junction resolvase YqgF [Acidovorax citrulli AAC00-1]
          Length = 150

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A+     R A P+  +  +        +   +      A ++G+P
Sbjct: 25  QSFLAFDFGAKRTGVAVGSRLLRAASPQATIRAEGADARFAAVAERLREWQPDALVVGVP 84

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 85  YHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEAHAGGAKDADAA------- 136

Query: 137 DSIAAALILQEVLDRIS 153
              +A +IL++ L ++ 
Sbjct: 137 ---SACIILEQFLRQLP 150


>gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp.
           novicida U112]
 gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase
 gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 136

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     + + F    + ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQNFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis
           Fe/C-56]
 gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase
 gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 150

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%)

Query: 14  KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAF 71
              + I   +D G +RIGLA +      + P  F+   K +  TA  L   I    ++  
Sbjct: 4   PKAKKIFLGVDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCV 63

Query: 72  IIGLPLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
           ++G P+ M  G +          + ++I    +V  V WDERL++  A+++L  D  +SR
Sbjct: 64  VLGNPIPMQIGQKSSLQEEILK-ISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSR 122

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           K+R  K DS+AA LIL   L+ 
Sbjct: 123 KQRKGKTDSVAATLILTNFLES 144


>gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase
 gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 136

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     S + F    + ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase
 gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase
 gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase
 gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
           holarctica 257]
 gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 136

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     S + F    + ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|332183969|gb|AEE26223.1| Putative Holliday junction resolvase [Francisella cf. novicida
           3523]
          Length = 136

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  I+GLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIVGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     + + F   +  R         +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQDFETDITKAAKDFAKEIQHR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 117

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 37  GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
            +  A+    +  K +      L S++  E +   +IG P+ ++G+          FV  
Sbjct: 1   MQFIANGLTTVETKDLFDF---LSSYVKQEEVERIVIGKPMQLDGNPSENFARVENFVGR 57

Query: 97  MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV---DSIAAALILQEVLDRIS 153
                  +P V++DER T+V A + +++  V +K R +     D I+A +ILQ+ ++   
Sbjct: 58  WRKSHPAIPIVYYDERFTSVLAHRAILESGVKKKTRRENKGLADEISATIILQDYMNSKK 117


>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
 gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
          Length = 170

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 2   SILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALE 58
            + L  +L+K+   NQ     +D+G K +GLA+SDP  + A P   L+RKK  +   A +
Sbjct: 6   PLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATD 65

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
             S I+  ++  FI+G P +      P     + FV ++    +   V F +WDE  T+ 
Sbjct: 66  FQSLISELSLGGFIVGYPFDRQ-RGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSK 124

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           + + ++  +++        +D  AA  ILQ  LD ++
Sbjct: 125 NVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVN 161


>gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08]
          Length = 134

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 32  AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
           A SD     A P   +  +   +    L   +        I+GLP+ +NG+E       R
Sbjct: 2   AASDRDAILAFPVETV--QTANRPMQRLAEIVAEYEPVEVIMGLPVALNGTEQLAARDIR 59

Query: 92  AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
                + +    +P  + DER+TT +A + L D   + +++   +D  AA  IL++VL++
Sbjct: 60  DAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQAAAVAILEDVLEQ 119

Query: 152 IS 153
           + 
Sbjct: 120 VR 121


>gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
          Length = 128

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 30  GLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
           G+AI       A+P P  V K       +LL  +       FI+GLPLNM+ SE      
Sbjct: 2   GMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELSTR 61

Query: 90  TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
            R F   +  +   +     DERLTT  A++ L       + +    DS AAAL++Q  
Sbjct: 62  ARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQSW 119


>gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           R(low)]
 gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase
 gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
           R(high)]
          Length = 142

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFIIG 74
            ++D+G++ +G+A  D   + A P   +   +      + L+ +  +  +      F+IG
Sbjct: 4   VALDVGSRTLGIATGDGEFKIASPYCVISFNQY--DFRQCLAELKEKTASFFYDFKFVIG 61

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           +P N++ ++         F+  ++        + +DE  T++ A Q+LID  +  KKR +
Sbjct: 62  MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120

Query: 135 KVDSIAAALILQEVLDRISF 154
           K+D +AA +ILQ   D   +
Sbjct: 121 KIDKLAAFVILQSFFDDDRY 140


>gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase
 gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 136

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     S + F    + ++        +E  +T  A+  L +   S+K    KV
Sbjct: 63  LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEF-KSKKISHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
           51756]
          Length = 148

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
            P   ID G++RIGLAI         P   +           L   +      A ++GL 
Sbjct: 11  GPWLGIDYGSRRIGLAILAHLDIAPRPLGTVANGGGGPDWPALEKVLAQWAPVACVVGLT 70

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              +G+E       R F   +  R   +P ++ DERL++V+A   L + +  ++++   +
Sbjct: 71  ARADGTESAVARGARHFAAALSQR-YGLPILWQDERLSSVTAAVRLREASPRKRRQRLAL 129

Query: 137 DSIAAALILQEV 148
           D +AA  IL+  
Sbjct: 130 DPLAACEILRGF 141


>gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase
 gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 136

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIGLA      + A P   +         +EL   +   N +  +IGLP
Sbjct: 3   QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     + + F   + +R         +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQDFETDITKAAKDFAKEVKER-YKRNVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K]
 gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase
 gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K]
          Length = 144

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
             IDLG  R G AISD   + + P    ++K        LE+   +    I   +IGLP+
Sbjct: 4   LGIDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIGLPI 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            +N  +         F  ++ ++++ +P  F +E  ++V A   + +  +  KKR   VD
Sbjct: 64  KINNEKTKSTIFVENFKKHL-EKEINLPIFFVNEYNSSVLANLSINE--MKSKKRKTIVD 120

Query: 138 SIAAALILQEVLDR 151
            I+A +IL + L+ 
Sbjct: 121 KISAQIILNDFLNN 134


>gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays]
 gi|194697900|gb|ACF83034.1| unknown [Zea mays]
          Length = 174

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 1   MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
           M +L  E+L + +           +  +D+G+K +G+AISD   R A P   L R K   
Sbjct: 1   MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNI 60

Query: 55  T--ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWD 110
              A +  + ++  +IA F++G P  + G          +    +    +   +P+ +WD
Sbjct: 61  NLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQV-SLAGELCKTGKLDDLPYAYWD 119

Query: 111 ERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153
           E  T+   + +L  +N+          D  AA  ILQ  LD ++
Sbjct: 120 ENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 163


>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
          Length = 180

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 1   MSILLIEDLVKS-----LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
           M +L  + L +       +    +  +D+G+K +GLA+SD   R A P   L R K   +
Sbjct: 1   MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60

Query: 56  --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
             A + ++ ++  ++A F++G P N+ G   P     R  V  +    +   + + +WDE
Sbjct: 61  LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120

Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
             T+     + +L  + +    +     D  AA  ILQ  LD ++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165


>gi|88705483|ref|ZP_01103194.1| Holliday junction resolvase [Congregibacter litoralis KT71]
 gi|88700573|gb|EAQ97681.1| Holliday junction resolvase [Congregibacter litoralis KT71]
          Length = 121

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 32  AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
           A+ +       P   L  +       ++ +          +IG PLNM+G+        R
Sbjct: 2   AVGNSALGTTQPLAILRARDGQPDWTQVAALCKEWEPDLLLIGDPLNMDGTVSDFAQRAR 61

Query: 92  AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
            F   + + ++ +     DERL++   +Q   +   S       VD +AA LIL++ L
Sbjct: 62  KFARRL-EGRLGIAVEMVDERLSSFEVKQQQREAGHSGDYHESPVDDLAAELILKDWL 118


>gi|160897026|ref|YP_001562608.1| Holliday junction resolvase-like protein [Delftia acidovorans
           SPH-1]
 gi|160362610|gb|ABX34223.1| Holliday junction resolvase YqgF [Delftia acidovorans SPH-1]
          Length = 152

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G A+     R A+P P +  +       +    I      A +IG+P
Sbjct: 27  QSFVAFDFGAKRTGCAVGTRMLRSANPLPTIRAEAGEARLAQAGERIKEWQPDALVIGVP 86

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+        + F   +  R   +P    DER +T  A         +        
Sbjct: 87  YHPDGNAHENTARAKKFGRQLKSR-FGLPVYEVDERYSTTEALAGGARDADAA------- 138

Query: 137 DSIAAALILQEVL 149
              +A +IL++ L
Sbjct: 139 ---SACIILEQFL 148


>gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP]
 gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase
 gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 146

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 20  ASIDLGTKRIGLAISDPG-RRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLP 76
            ++DLGTK  G AISDP    FA P      ++    +   +L  +         I+G P
Sbjct: 8   IALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVINKLKHYEKKYEFDTIILGYP 67

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L M G+   R      F   ++ +      V  DERL+TV A+ +L + N+S+ K  +K 
Sbjct: 68  LRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQSKIKEKK 126

Query: 137 DSIAAALILQEVLDR 151
           DS+AAAL+L   L+ 
Sbjct: 127 DSMAAALLLNYYLNN 141


>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
          Length = 180

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 1   MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
           M +L  + L + +     +    +  +D+G+K +GLA+SD   R A P   L R K   +
Sbjct: 1   MRLLKADQLFRKVIDGGSRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60

Query: 56  --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
             A + ++ ++  ++A F++G P N+ G   P     R  V  +    +   + + +WDE
Sbjct: 61  LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120

Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
             T+     + +L  + +    +     D  AA  ILQ  LD ++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165


>gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
 gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
          Length = 135

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +A++D+G  RIGLA+ + G  +A  R +LVR+      L L +F   E +A  I+GLPL
Sbjct: 2   KVAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G+   +       V  +  R+  +     DER TT    Q L +     ++   K+D
Sbjct: 62  RTDGTPSAQAARVLELVRAL--REAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKLD 119

Query: 138 SIAAALILQEVLDRIS 153
             AA  +L+  L+R  
Sbjct: 120 EAAAVALLESYLERAR 135


>gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 136

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     + + F    + ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQDFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|124265899|ref|YP_001019903.1| Holliday junction resolvase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258674|gb|ABM93668.1| putative Holliday junction resolvase [Methylibium petroleiphilum
           PM1]
          Length = 136

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)

Query: 6   IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           + +   + +P Q + + D G KR G+A  +   R A P   +  +        +   I  
Sbjct: 1   MPEPAGAPQPLQTLLAFDFGLKRTGVATGNTLTRSAQPLRTVAAE-GDARFDAIAKLIAE 59

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
              AA ++G+P + +G+        + F   +  R   +P    DER +T  A
Sbjct: 60  WQPAALVVGVPFHPDGAPHDNTRRAQRFARQLHGR-FRLPVHEVDERWSTTEA 111


>gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549]
          Length = 138

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + +ID G  RIG+A      + A P   +         +EL   I   N +  IIGLPL
Sbjct: 6   SLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPL 65

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +    E     + + F    + ++        +E  +T  A+  L ++  S+K    KVD
Sbjct: 66  DTQDFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKVD 123

Query: 138 SIAAALILQEVL 149
           ++AA +IL+  +
Sbjct: 124 ALAACVILETWM 135


>gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515]
 gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase
 gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. MIT 9515]
          Length = 151

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
             ++ I S+D+GTKRIGLA  D      +  P L R+K       + S I   N+  FI+
Sbjct: 6   PKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNLTGFIV 65

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL+  G    +    + +   + +  + +PF F +E  +T  ++       V +K + 
Sbjct: 66  GLPLDDKGRMTSQAFDCKTYGEYLFNE-LKLPFSFVNEHSSTWESENRF---GV-KKDKS 120

Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
             +DS++A +IL++ +     L+   G
Sbjct: 121 GLIDSLSAKVILEQWIQEGPELKELMG 147


>gi|319940853|ref|ZP_08015192.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis
           3_1_45B]
 gi|319805735|gb|EFW02516.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis
           3_1_45B]
          Length = 141

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           L   L     + + D G  R G+A+ +   R A P   L           + + ++    
Sbjct: 5   LETFLSEPGTVLAFDFGLARTGVAVGNTVTRTAEPLVILDASTNESRWQSIEALMSEWKP 64

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++G+P   +G+          F   +   + ++     DER ++V            
Sbjct: 65  KFLVVGVPRLGDGNPSTLTARCERFARQL-GGRYHLRVFTVDERFSSVEV---------- 113

Query: 129 RKKRIQKVDSIAAALILQEVL 149
             +    +D  AAA+IL++  
Sbjct: 114 -AQGRDHIDDRAAAVILEQFF 133


>gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
 gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
          Length = 136

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIGLA+ + G  +A  R +LVRK +      L +F   E    F++GLPL
Sbjct: 2   RVVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +G    +    +A V  M +R   +     DER TT   Q  L       ++   K+D
Sbjct: 62  RTDGRPSAQAERVQALVEAMRER--GMQLELLDERYTTKLGQNRLKHAPKRIRQEKGKLD 119

Query: 138 SIAAALILQEVLDRI 152
             AA  +L+  L R+
Sbjct: 120 EAAAIALLESYLARV 134


>gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct]
          Length = 184

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG++      + A P   +         +EL   I   N +  IIGLP
Sbjct: 42  QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     S + F    + ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 102 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 159

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 160 DALAACVILETWM 172


>gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
 gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
          Length = 123

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID GTKRIGLA+ D   +   P   +  K        L   +    I   ++G PL 
Sbjct: 2   ILGIDYGTKRIGLALGDKHLKIYKPFKII--KNDKNLIQTLKHIVKAYKIELIVLGYPLT 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G EG R    + F   ++ +++ +  V  DER TT  A+ +  +         +++D 
Sbjct: 60  PSGKEGQRAKKVKKFYE-LLKKELNIDIVLQDERYTTFEAKSLSDE---------KEIDH 109

Query: 139 IAAALILQEVLDRI 152
           I+A +IL+E  + +
Sbjct: 110 ISAYIILKEYAENL 123


>gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase
 gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase
 gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 136

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q + +ID G  RIG++      + A P   +         +EL   I   N +  IIGLP
Sbjct: 3   QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+    E     S + F    + ++        +E  +T  A+  L ++  S+K    KV
Sbjct: 63  LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120

Query: 137 DSIAAALILQEVL 149
           D++AA +IL+  +
Sbjct: 121 DALAACVILETWM 133


>gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311]
 gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311]
          Length = 158

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
             ++ + S+D+G KRIGLA  D       P P L+R+   Q    L     T  +   ++
Sbjct: 3   PSSRSMLSLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVV 62

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL+  G    +    + +   +    + +P    +E  ++ +A +           R 
Sbjct: 63  GLPLDAAGQFTEQAAHCQRYGQRLA-MALKLPLALVNEHSSSWAAAERYGLQG----DRS 117

Query: 134 QKVDSIAAALILQEVL 149
            ++DS AA+L+L++ L
Sbjct: 118 GRLDSAAASLLLEQWL 133


>gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 137

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPL 77
           I ++D G KRIG+A SD    +A P   L    + T+  +EL            ++GLP 
Sbjct: 2   IVAVDFGLKRIGMARSDDSETWAFPHKTLEGNDLETKLIIELKKI----GPRVVVLGLPR 57

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+EG    + RA    + D  V     FWDERLT+    +          K   KVD
Sbjct: 58  NMDGTEGEMAVAVRALGQRLED--VGFTVDFWDERLTSRLVSRQDPRSLKKAIKDKGKVD 115

Query: 138 SIAAALILQEVLD 150
            ++A LILQE ++
Sbjct: 116 LMSAVLILQEYIN 128


>gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1]
 gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase
 gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 128

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +A+ID+G KRIG AI     R   P+  ++RK   Q A +++SF+    I   ++GLP 
Sbjct: 2   KLAAIDVGLKRIGTAIC-LDGRIVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLPK 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             + SE       + FV  +   ++ +P V+ DE+ ++  A+++       R K+  K+D
Sbjct: 61  GGSSSE-EMERRIQHFVSLL---ELDIPVVYQDEQGSSFEAKEM--TQGQFRHKKDGKID 114

Query: 138 SIAAALILQEVL 149
           SIAA +IL+  L
Sbjct: 115 SIAAKIILERHL 126


>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]
          Length = 679

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R GLA+S        P   L  +   +  L+LL     E +  FIIGLP++ 
Sbjct: 513 LGVDLGMSRTGLALS--KGFSVRPLSVLKLR-GQKLELQLLEIAGREEVDEFIIGLPVSD 569

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+    +  R           DE  T+  A  ++IDM  S+  R  ++D
Sbjct: 570 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 629

Query: 138 SIAAALILQEVL 149
           + AA ++L+   
Sbjct: 630 AYAAMMVLERYF 641


>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
          Length = 170

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 2   SILLIEDLVKSLK-PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALE 58
            + L +DL+K+       +  +D+G K +G+A+SD   + A P   L+RKK  +   A +
Sbjct: 6   PLNLFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAAD 65

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
             S I+  ++  FI+G P +      P     + F+ ++    +   + + +WDE  T+ 
Sbjct: 66  FQSLISELSLVGFIVGYPFDRQ-KGTPDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSK 124

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
           + + +L  +N+   +    +D  AA  ILQ  LD ++
Sbjct: 125 NVELLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVN 161


>gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM
           14977]
 gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM
           14977]
          Length = 133

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D+G  RIG+A+++ GR  A  R ++ R+ +      +      E     ++GLP   
Sbjct: 2   LGLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRT 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G EG    + +            +   F DER TT  A Q L  +   ++++  ++D  
Sbjct: 62  GGEEG--AQAAKVRAFAAALEAAGLEVRFVDERFTTRVAAQALAHLPRKKRQQKGRLDEA 119

Query: 140 AAALILQEVLDR 151
           AA  IL+  L+R
Sbjct: 120 AAVAILETYLER 131


>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa]
 gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R G+A+S        P   L  +   +  L LL     E +  FIIGLP + 
Sbjct: 92  LGVDLGLSRSGVALS--KGFTVRPLTVLELR-GQKLELRLLEIAENEEVDEFIIGLPKSW 148

Query: 80  NGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+       +           DE  T+  A   +IDM +++  R +KVD
Sbjct: 149 DGKETPQSNKVRSVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVD 208

Query: 138 SIAAALILQEVL 149
           + AA ++L+   
Sbjct: 209 AYAAVMVLERYF 220


>gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
           SRS30216]
 gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase
 gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
           SRS30216]
          Length = 188

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
            ++D+G+ R+GLA  DP    A P   LVR         E+ +          ++GLPL+
Sbjct: 7   LAVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEIVLGLPLS 66

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GSEGP       +   ++     VP    DERL+TV A + L    +  K+
Sbjct: 67  LDGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQ 119


>gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
 gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
          Length = 141

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  +D G K+ G A  D   +   P   +      +    L+  I  +NI   + GLPL+
Sbjct: 2   VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E       R F   ++   V V  VF DE  T+  A  IL      +  + +  D 
Sbjct: 62  DEGKESEWCSEIRRFSDFLLK-SVKVNVVFVDEYGTSKEADYILR--GRKKNVKKKANDL 118

Query: 139 IAAALILQEVLDRISF 154
           IAAALIL+  L+ ++ 
Sbjct: 119 IAAALILENYLNVLNM 134


>gi|221065221|ref|ZP_03541326.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1]
 gi|220710244|gb|EED65612.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1]
          Length = 170

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q     D G KR G A  +     A+P P +           +   I      A +IG+P
Sbjct: 45  QQFLGFDFGIKRTGCASGNRVLGGANPLPTIRADGADARLAAVEKLIREWQPNALVIGVP 104

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156

Query: 137 DSIAAALILQEVL 149
              +A +IL++ L
Sbjct: 157 ---SACIILEQFL 166


>gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus]
          Length = 258

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 2   SILLIEDLVKSLK----PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57
           +IL    +VK          P+  +D+     G+A+SD  +  A P   + R++ T+   
Sbjct: 79  TILTAAGMVKLCGLPGNRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLD 138

Query: 58  ------ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWD 110
                 +L   +   +    ++G PL+ +G    +      F+  + +  KV +P   +D
Sbjct: 139 PALVIGKLREIVEDCSACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFD 198

Query: 111 ERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
           ER+T+V A+ IL D  +  +K  ++ D  AA +ILQ  LD 
Sbjct: 199 ERMTSVEARGILKDDGL-GRKIAEREDETAAMVILQGFLDS 238


>gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD]
 gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD]
          Length = 124

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 51  KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV------ 104
              +   E+L  I   N+   +IGLPL ++G+EG        +  N+I R   +      
Sbjct: 6   DSFRAIDEVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDW 65

Query: 105 ------PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
                   V+ DERLTTVSA + L+  ++S KK    VD  +A LILQ  LD 
Sbjct: 66  ALDYMPEVVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALDS 118


>gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
           GTL1]
 gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
           GTL1]
          Length = 138

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             + ++D+GTKRIG+A +D   RF  P   L    +      L   I     +  I+G P
Sbjct: 6   HSVIALDVGTKRIGIAHADTAVRFPVPYGTLEVDGLE--IERLREIIAELEPSLIIVGYP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            N  G    +    + F   +      +  +F DE LT+V A++ L   N  +      +
Sbjct: 64  RNQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQN--KPYTKSDI 119

Query: 137 DSIAAALILQEVLDR 151
           D+ AAA+IL + L+ 
Sbjct: 120 DAHAAAIILGDYLEE 134


>gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307]
 gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307]
          Length = 151

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
              + + ++D+G +RIGLA  DP      P P L R +  Q   +L   +      A ++
Sbjct: 7   PQARSVLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVV 66

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL+ +G+  P+    R +   +  + + +P  + +E  ++ +A     + +     R 
Sbjct: 67  GLPLDPDGAFTPQAEHCRRYGERLA-QSLSLPVAWVNEHSSSWAA----AEQHGLHGDRT 121

Query: 134 QKVDS 138
            ++DS
Sbjct: 122 GRLDS 126


>gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group]
          Length = 237

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 7   EDLVKSLKPNQPI--------ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           ++L  +L PN             +DLG  R G+A+   G     P   L  +      + 
Sbjct: 56  DELPAALLPNAARRRDGCRFSLGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM- 113

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTV 116
           LL     +     I+GLP++ +GSE P+ +  R+ V  +  +     +     DE  TT+
Sbjct: 114 LLDIAQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEHGTTI 173

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
            A + +I   V R  R  K D+ +A +IL+   
Sbjct: 174 DALEFMISRGVKRSARDVKSDAYSAMMILERYF 206


>gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2]
 gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase
 gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 142

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  I +ID GTK IG AI+D       P   +   ++     ++L  +  ENI   +IG 
Sbjct: 5   NSKILAIDFGTKIIGTAINDINLNLCLPYCEITNNELK--FKKILEIVEEENIKEIVIGF 62

Query: 76  PLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           P   N     R      F + + +  +   +   F+DE  +T S+++ L++ NV   K  
Sbjct: 63  PKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTSKLK 122

Query: 134 QKVDSIAAALILQEVL 149
           +  D IAA++IL+  L
Sbjct: 123 KNKDMIAASIILENYL 138


>gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist]
 gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27]
 gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase
 gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase
 gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist]
          Length = 145

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G+ RIG+A        A P   L R        E+L +I+  +I   +IGLPL +
Sbjct: 11  LGLDFGSTRIGVAR--NCGSLAVPVGVLPRAS----CAEILGYISRYSIDEVVIGLPLTL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G E       + F   ++     V   F+DER TTV A Q    +    K+  + VD+ 
Sbjct: 65  AGKEKQSARLAKEFSRFLVSS--GVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAA 122

Query: 140 AAALILQEVLD 150
           AA ++LQ  LD
Sbjct: 123 AATVMLQLFLD 133


>gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group]
 gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group]
 gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group]
 gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group]
 gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group]
 gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 237

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 7   EDLVKSLKPNQPI--------ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
           ++L  +L PN             +DLG  R G+A+   G     P   L  +      + 
Sbjct: 56  DELPAALLPNAARRRDGCGFSLGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM- 113

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTV 116
           LL     +     I+GLP++ +GSE P+ +  R+ V  +  +     +     DE  TT+
Sbjct: 114 LLDIAQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEYGTTI 173

Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
            A + +I   V R  R  K D+ +A +IL+   
Sbjct: 174 DALEFMISRGVKRSARDVKSDAYSAMMILERYF 206


>gi|264680115|ref|YP_003280024.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2]
 gi|262210630|gb|ACY34728.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2]
          Length = 170

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q     D G KR G A  +     A+P P +  +        +   I      A +IG+P
Sbjct: 45  QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156

Query: 137 DSIAAALILQEVL 149
              +A +IL++ L
Sbjct: 157 ---SACIILEQFL 166


>gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
           25986]
 gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
           25986]
          Length = 119

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
            A P   L   +VT  A      +        + G PL M G  GP+     A    + D
Sbjct: 1   MAMPVKVLPAAEVTGMAKTFRYLVEDYEPDILVSGRPLTMAGEPGPQAERVAAVAQKIAD 60

Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
             + +P  F DERL++  A++IL +  ++ K+   K+D IAA+L LQ  LDR +
Sbjct: 61  E-LDLPLEFEDERLSSQEAKRILREQGLNEKQMRGKIDMIAASLFLQTWLDRKN 113


>gi|299534054|ref|ZP_07047406.1| Holliday junction resolvase-like protein [Comamonas testosteroni
           S44]
 gi|298717963|gb|EFI58968.1| Holliday junction resolvase-like protein [Comamonas testosteroni
           S44]
          Length = 170

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q     D G KR G A  +     A+P P +  +        +   I      A +IG+P
Sbjct: 45  QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156

Query: 137 DSIAAALILQEVL 149
              +A +IL++ L
Sbjct: 157 ---SACIILEQFL 166


>gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
           9941]
 gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase
 gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
           9941]
          Length = 139

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
            P   +A++DLG    G+A+SDP R  A P   +   ++      L   +  E +   ++
Sbjct: 3   PPEGRVAALDLGEVWTGVAVSDPTRTLARPLEVVRTSELPGVLRRL---VREEGVGEVLV 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLP  + G  G +       + ++      V FV WDERLTT      L +     ++  
Sbjct: 60  GLPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR-- 117

Query: 134 QKVDSIAAALILQEVLD 150
           ++VD +AAA +LQE L+
Sbjct: 118 ERVDHLAAARMLQEYLE 134


>gi|21243644|ref|NP_643226.1| Holliday junction resolvase-like protein [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|32130040|sp|Q8PII0|RUVX_XANAC RecName: Full=Putative Holliday junction resolvase
 gi|21109221|gb|AAM37762.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 155

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++P+  +   D+G++RIG+A+       A     +         + L          
Sbjct: 4   AGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVVGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 123 RKRRRD 128


>gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ]
          Length = 153

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 19  IASIDLGTKRIGLAISDPGRR-FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I SID G K  GLA   PGR  F   R  ++ +   Q   EL   I  +     ++G+P 
Sbjct: 19  ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
            ++G+E       R F   + ++   +     DE L++ +AQ+ + +    + K   +++
Sbjct: 79  YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138

Query: 137 DSIAAALILQEVL 149
           D +AA +IL++ +
Sbjct: 139 DEVAATIILEDFM 151


>gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
 gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
          Length = 134

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G ++ G+A+     + A P   L        A    +++   +++  +IGLP  
Sbjct: 6   ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G E P     R            +P  + DE L++  A+  L           ++VD+
Sbjct: 66  RDGKEHPLAAPIRRIGAK-CQEAFGLPVHYIDEYLSSHEARARLPG--------EKEVDA 116

Query: 139 IAAALILQEVL 149
           +AAA+I ++ L
Sbjct: 117 MAAAIIAEDWL 127


>gi|58581049|ref|YP_200065.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425643|gb|AAW74680.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 167

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             ++ P+  +   D+G++RIG+A+       A     +           L          
Sbjct: 16  AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPD 75

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++    P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 76  GLVVGDPLTLDDKHQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 134

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 135 RKRRRD 140


>gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group
           II '5-way CG']
          Length = 171

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITTEN 67
             P+  ID G  RIGLAISD   RF+ P   +  +          +++   L    T + 
Sbjct: 15  KAPLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKK 74

Query: 68  IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124
           I   I G+P  +++G   P+      +   +I      P   WDE LT+  + +++I   
Sbjct: 75  IRGIIFGVPWYHLSGDPNPKSEIFVEYA-RLIRSLTGCPVFLWDEGLTSDVLKSERISGK 133

Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
              SR  K+    +D  +A LILQ  LD  
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163


>gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01]
 gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01]
          Length = 128

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
           G  RIGLA+ + G  FA  R +LVR+ + +    LL F+  E +   ++GLPL  +  E 
Sbjct: 2   GEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKES 61

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
            +       V  +  R   V     DER TT +A + L       ++   ++D ++A ++
Sbjct: 62  AQAQRVLPLVEAL--RAKGVEVELVDERYTTQAAARRLKHAPKRIRREKGRLDEMSAVIL 119

Query: 145 LQEVL 149
           L+  L
Sbjct: 120 LEGYL 124


>gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
 gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
          Length = 173

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFII 73
                  +D+G  R+G+A +DP    A P   L R    +  + EL++     ++ A  +
Sbjct: 16  RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 75

Query: 74  GLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           GLP+N+ G   P       +       +++    VP    DERL+TVSAQ  L     S 
Sbjct: 76  GLPVNLRGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGLRAAGRSV 135

Query: 130 KKRIQKVD 137
           K     +D
Sbjct: 136 KDSRGVID 143


>gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum]
          Length = 171

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITTEN 67
             P+  ID G  R+GLA+SD   RF+ P   +  +          +++   L    T + 
Sbjct: 15  KAPLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKK 74

Query: 68  IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124
           I   + G+P  +++G   P+      +   +I      P   WDE LT+  + ++++   
Sbjct: 75  IQGIVFGVPWYHLSGDPNPKSEVFVEYA-RLIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133

Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
              SR  K+    +D  +A LILQ  LD  
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163


>gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. campestris str. B100]
 gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase
 gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv.
           campestris]
          Length = 155

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++P+  +   D+G++RIG+A+       A     +         + L         A
Sbjct: 4   AGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPA 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVVGDPLTLDDKDQPARKRAHAFARELRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRI 133
           RK+R 
Sbjct: 123 RKRRR 127


>gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
 gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
          Length = 155

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++P+  +   D+G++RIG+A+       A     +           L          
Sbjct: 4   AGAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHATGPDWAALDRVHKEWRPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             +IG PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 123 RKRRRD 128


>gi|222112065|ref|YP_002554329.1| holliday junction resolvase-like protein [Acidovorax ebreus TPSY]
 gi|221731509|gb|ACM34329.1| Holliday junction resolvase YqgF [Acidovorax ebreus TPSY]
          Length = 139

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A+     R A P+  + R +      ++   I      A ++G+P
Sbjct: 15  QSFLAFDYGLKRTGVAVGTRMLRSATPQGTI-RAEGDARFAQVAERIREWQPDALVVGVP 73

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+ +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 74  LHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEALSAGAADADAASA----- 127

Query: 137 DSIAAALILQEVL 149
                 +IL++ L
Sbjct: 128 -----CIILEQFL 135


>gi|78048618|ref|YP_364793.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325925530|ref|ZP_08186918.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118]
 gi|146325624|sp|Q3BR20|RUVX_XANC5 RecName: Full=Putative Holliday junction resolvase
 gi|78037048|emb|CAJ24785.1| putative Hollyday junction resolvase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544034|gb|EGD15429.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118]
          Length = 155

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++P+  +   D+G++RIG+A+       A     +         + L          
Sbjct: 4   AGAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVYKQWRPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVVGDPLTLDDKDQPARKRAHAFGRQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 123 RKRRRD 128


>gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 250

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 47/117 (40%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                   +D+G+ RIG+A SDP    A P   + R +  +    L +          ++
Sbjct: 19  PGRGRRLGVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVV 78

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
           GLP  +    GP           + DR    P    DERLTTVSAQ+ L    V  K
Sbjct: 79  GLPRTLADRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAK 135


>gi|294626288|ref|ZP_06704891.1| holliday junction resolvase-like protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294666666|ref|ZP_06731903.1| Holliday junction resolvase-like protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292599434|gb|EFF43568.1| holliday junction resolvase-like protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603572|gb|EFF46986.1| Holliday junction resolvase-like protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 155

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++P+  +   D+G++RIG+A+       A     +           L          
Sbjct: 4   AGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWGALDRVYKQWRPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             +IG PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 123 RKRRRD 128


>gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994]
 gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994]
          Length = 130

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +IDLG KRIGLA+S  G     P P + RK   Q A ++   +        ++G+
Sbjct: 1   MGAIIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+   GS        R   H M   +      + DE  ++  A++++      R KR  +
Sbjct: 60  PM---GSTTEDEMR-RRVAHFMNLVEFNGEIAYQDESHSSKEAEELMK--GDIRYKRDGR 113

Query: 136 VDSIAAALILQEVL 149
           +DS++A +IL+  L
Sbjct: 114 IDSLSAKIILERYL 127


>gi|84622967|ref|YP_450339.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188577974|ref|YP_001914903.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|118597225|sp|Q5H2Z1|RUVX_XANOR RecName: Full=Putative Holliday junction resolvase
 gi|146325625|sp|Q2P5W2|RUVX_XANOM RecName: Full=Putative Holliday junction resolvase
 gi|226695317|sp|B2SIZ4|RUVX_XANOP RecName: Full=Putative Holliday junction resolvase
 gi|84366907|dbj|BAE68065.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522426|gb|ACD60371.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 155

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             ++ P+  +   D+G++RIG+A+       A     +           L          
Sbjct: 4   AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++    P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVVGDPLTLDDKHQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 123 RKRRRD 128


>gi|121595864|ref|YP_987760.1| Holliday junction resolvase-like protein [Acidovorax sp. JS42]
 gi|120607944|gb|ABM43684.1| Holliday junction resolvase YqgF [Acidovorax sp. JS42]
          Length = 139

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A+     R A P+  + R +      ++   I      A ++G+P
Sbjct: 15  QSFLAFDYGLKRTGVAVGTRMLRSATPQGTI-RAEGDARFAQVAERIREWQPDALVVGVP 73

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
           L+ +G+          F   +  R   +P    DER +T  A         +        
Sbjct: 74  LHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEALSAGAADADAASA----- 127

Query: 137 DSIAAALILQEVL 149
                 +IL++ L
Sbjct: 128 -----CIILEQFL 135


>gi|166711264|ref|ZP_02242471.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 155

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             ++ P+  +   D+G++RIG+A+       A     +           L          
Sbjct: 4   AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWGALDRVHKEWRPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVVGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRI 133
           RK+R 
Sbjct: 123 RKRRR 127


>gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp.
           SB155-2]
 gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 130

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             IA+ID+G KRIG AI     +   P+  ++RK   Q A ++ SF+   NI   ++G+P
Sbjct: 3   SRIAAIDVGLKRIGTAIC-LDGKIVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP 61

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
              +G+    +    A   +++D        F DE  T+  A++      V + K+  K+
Sbjct: 62  ---DGTSKEEMQRRIAHFVSLLD--FDGVVEFVDEGFTSHEAKEATK--GVIKHKKDGKI 114

Query: 137 DSIAAALILQEVL 149
           DSIAA  IL+  L
Sbjct: 115 DSIAAQKILERWL 127


>gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 233

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R GLA+S        P   L  +   +  L+LL     E +  FIIGLP++ 
Sbjct: 67  LGVDLGMSRTGLALS--KGFSVRPLSVLKLR-GQKLELQLLEIAGREEVDEFIIGLPVSD 123

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+    +  R           DE  T+  A  ++IDM  S+  R  ++D
Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183

Query: 138 SIAAALILQEVL 149
           + AA ++L+   
Sbjct: 184 AYAAMMVLERYF 195


>gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
           56']
 gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
           56']
          Length = 163

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           IDLG  R+G+A++D    +AHPRP L  +        L +    E I  F++GLPL MNG
Sbjct: 33  IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
            EGP      A     +     V     DERLTTV A + L D  VS +K  ++VD
Sbjct: 93  DEGPAARRALA-FAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVD 147


>gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
           str. MIT 9202]
          Length = 140

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           D+GTKRIGLA  DP    ++  P + R +  Q    + + I   N+  FI+G+PL+  G 
Sbjct: 2   DVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKGL 61

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
              +    + +   +++  + +PF + +E  +T  +          +K +   +DS +A 
Sbjct: 62  MTSQAIDCKNYGQLLLNE-LKLPFSYVNEHSSTWESSDRF----GIKKDKSGLIDSFSAK 116

Query: 143 LILQEVLDRISFLESSKG 160
           +IL++ ++    LE   G
Sbjct: 117 IILEQWIEEGPELEEIIG 134


>gi|325916092|ref|ZP_08178381.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937]
 gi|325537701|gb|EGD09408.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937]
          Length = 154

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
            +++P+  +   D+G++RIG+A+       A     +         + L           
Sbjct: 4   AAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPNG 63

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILID-MNVS 128
            ++G PL ++  + P      AF   +  R   +P V  DER ++V  AQ+   +  + S
Sbjct: 64  LVVGDPLTLDDKDQPARKRAHAFARELRAR-YALPVVLIDERSSSVEAAQRFARERADGS 122

Query: 129 RKKR 132
           +++R
Sbjct: 123 KRRR 126


>gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
 gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
          Length = 149

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTEN 67
                   ID+G  R+G+A+SDP    A P   + R       +      E+ + +   +
Sbjct: 4   PRRGRRLGIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHD 63

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           +   I+GLP  + G+EGP   + RAF  +++   + VP    DERLTTV A + L +  V
Sbjct: 64  VVQVIVGLPRTLAGAEGPAAAAARAFADDLV-AVLDVPVELSDERLTTVVATRQLRERGV 122

Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
             K++   VD  AA  ILQ  LD
Sbjct: 123 KGKRQRAVVDQAAAVAILQGWLD 145


>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
          Length = 171

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 11/159 (6%)

Query: 2   SILLIEDLVKSL-KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58
            + L  DLVK+  K    +  +D+G K +GLA+SD   + A P   LVRKK      A +
Sbjct: 6   PLQLFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAAD 65

Query: 59  LLSFITTENIAAFIIGLP--LNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLT 114
             S ++  ++  F+IGLP   ++           + F+ N+    +   + + +W+E  T
Sbjct: 66  FKSLVSKYSLKGFVIGLPFDRHL---VSSDAVKVKVFIDNLRRTNMFDGLKYTYWNECFT 122

Query: 115 TVSAQQILIDMNVSRKKR-IQKVDSIAAALILQEVLDRI 152
           + + + ++  +N++        +D  AA  ILQ  LD +
Sbjct: 123 SKNVEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYV 161


>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays]
 gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays]
          Length = 235

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R GLAI   G  F  P   L R +  +  L LL     +     IIGLP++ 
Sbjct: 75  LGVDLGDARTGLAIG-RGITFPRPLTVL-RLRGQKLELALLDVARQQEADELIIGLPVSA 132

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +GSE P+ +  R+ V  +  +     +     DE  T+  A   +I   V +  R  K D
Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192

Query: 138 SIAAALILQEVL 149
           + AA +IL+   
Sbjct: 193 AYAAVMILKRYF 204


>gi|319764293|ref|YP_004128230.1| holliday junction resolvase yqgf [Alicycliphilus denitrificans BC]
 gi|317118854|gb|ADV01343.1| Holliday junction resolvase YqgF [Alicycliphilus denitrificans BC]
          Length = 137

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A+     R A P+  + R +       +   I      A ++G+P
Sbjct: 13  QSFLAFDFGLKRTGVAVGTRMLRTATPQGTI-RAEGDARFAAVAERIREWQPDALVVGVP 71

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +     DER +T  A         +        
Sbjct: 72  CHPDGAPHENTARALKFARQLRGR-FGLQVFEVDERYSTTEALAAGAGDADAASA----- 125

Query: 137 DSIAAALILQEVL 149
                 +IL++ L
Sbjct: 126 -----CIILEQFL 133


>gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
 gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
          Length = 85

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           ++GLP NM+GSEGPR  ++RAF  N  +    +P + WDER +T SA+  +I  ++SRKK
Sbjct: 1   MLGLPRNMDGSEGPRAQASRAFARN-AEEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59

Query: 132 RIQKVDSIAAALILQEVLDRIS 153
           R + +DS AAA+ILQ  +DR++
Sbjct: 60  RAESIDSHAAAVILQGAIDRLA 81


>gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma
           proteobacterium HTCC2148]
 gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma
           proteobacterium HTCC2148]
          Length = 98

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
            + +        ++G PLNM+GS          F   +   ++ +P    DERL++  A+
Sbjct: 2   AALVDEWQPDLLVVGEPLNMDGSVSELSEKAHKFGRRL-GGRLNLPVQMVDERLSSFEAK 60

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149
           Q   +           +DS+AA LILQ  L
Sbjct: 61  QQSRERGHGGDYNKNPIDSLAAELILQTWL 90


>gi|121606236|ref|YP_983565.1| Holliday junction resolvase-like protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595205|gb|ABM38644.1| Holliday junction resolvase YqgF [Polaromonas naphthalenivorans
           CJ2]
          Length = 156

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A  +   R A P+  +  + V +  L + + I      A ++G+P
Sbjct: 30  QTFLAFDYGFKRTGVASGNILTRTATPQATIAAEGVARFPL-IQARIKEWQPDALVVGIP 88

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+        + F   +  R   +     DER +T  A    +             
Sbjct: 89  FHPDGASHDNTVRAQKFARQLRGR-FGLQVFEVDERYSTTEA----LASGAKDADAASA- 142

Query: 137 DSIAAALILQEVLDRISF 154
                ++IL++ L  +  
Sbjct: 143 -----SIILEQFLRSLPH 155


>gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 296

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +P++    +D GT+R+GLAI       A P    V   + + A ++L     E I   ++
Sbjct: 75  RPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRDIVV 133

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
           GLPL  NG+E       R F   + D     +       WDER ++  A  +L       
Sbjct: 134 GLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGM 193

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
             +++ +DS+AA+LIL+   + 
Sbjct: 194 SSKVE-IDSLAASLILKHFFEE 214


>gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303]
 gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. MIT 9303]
          Length = 214

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +    + I S+DLG +RIGLA  DP      P P L RK   +    L    T+  +
Sbjct: 54  MTATKPRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRKV 113

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLPL+  G    +      +   +  R + +P    +E  ++ +A +        
Sbjct: 114 EGLVVGLPLDSKGLPTDQARHYERYGQRLA-RALKLPLALVNEHSSSWAAAERYNLQG-- 170

Query: 129 RKKRIQKVDS 138
              R  ++DS
Sbjct: 171 --DRSGQLDS 178


>gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 135

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q I ++D+G KRIG+A     +    P P ++RK   Q A ++ + I  +N    +IG+
Sbjct: 1   MQNIIALDIGLKRIGIA--QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILVIGI 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P + + S        + F+ N+++    +   F DE  ++  A Q +   +   KK+   
Sbjct: 59  PQDGDSSL-EMERRIKHFI-NLLEIPKGIEICFIDESFSSFEALQKM-QGSKKNKKKDGS 115

Query: 136 VDSIAAALILQEVL 149
           +DS+AA +IL+  L
Sbjct: 116 LDSLAALIILERYL 129


>gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase
 gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 151

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%)

Query: 10  VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +K  KP  + I S+D+G KRIGLA  D      +  P L R++     + +   I   N+
Sbjct: 1   MKYCKPKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNL 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
             FI+GLPL+  G    +    + +   + +  + +PF F +E  +T  +        V 
Sbjct: 61  TGFIVGLPLDEAGGMTSQALDCKTYGEFLFNE-LKLPFSFVNEHSSTWESTNRF---GV- 115

Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           +K +   +DS++A +IL++ +     L+   G
Sbjct: 116 KKDKSGLIDSLSAKIILEQWIQEGPELKELVG 147


>gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein)
           [Campylobacter lari RM2100]
 gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase
 gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein)
           [Campylobacter lari RM2100]
          Length = 128

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    +  A P   ++RK   Q A E+  +I   ++   ++G+PL  
Sbjct: 4   LALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPLGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE         F+  +          F DE  ++ +AQ++ +   V+ KK+  K+DS+
Sbjct: 63  S-SEDEMRKRVEHFISLL---DFDKEVFFVDESFSSKNAQELGM---VNLKKKDGKLDSL 115

Query: 140 AAALILQEV 148
           AA L L++ 
Sbjct: 116 AAYLFLKDF 124


>gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
 gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
          Length = 161

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
            P + + ++D+G +RIGLA  DP      P   L R         L   +    + A ++
Sbjct: 6   PPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRVQALVV 65

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
           GLPL+ +     +    R +   +  + + +P  + DE  ++  A ++  +  + S +
Sbjct: 66  GLPLDASQQPTVQARHCRRYGQRLA-QALELPLAWVDEHGSSWEAGERRGLHGDRSGQ 122


>gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 134

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D G  R+G+A  D   + A  R  +  +K T     L   +    I  F++G+P + 
Sbjct: 1   MALDYGEHRVGVAFGDSELKMAFSRETI-DQKTTNLFERLDQLVRLNKIDEFVVGMPYHP 59

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQKVDS 138
           +G +  +     AF+ ++  R   +     DE  ++V AQ+    M+   ++K    +D 
Sbjct: 60  DGRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDR 119

Query: 139 IAAALILQEVLDR 151
            AAA+ILQ   D 
Sbjct: 120 TAAAIILQRWFDE 132


>gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [Megamonas hypermegale ART12/1]
          Length = 75

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MNG+ G R    + F   +++       +FWDERL+TV+A + L++ +VSR KR + +D 
Sbjct: 1   MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60

Query: 139 IAAALILQEVLDRIS 153
           +AA  ILQ  LD + 
Sbjct: 61  MAAVFILQGYLDSLK 75


>gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase
 gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 153

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                + S D G KRIGLA  DP          + R    +    + S      I   I+
Sbjct: 4   PKPTSVLSFDYGHKRIGLAGCDPLGITVTALSPIHRISFQKDLTLIKSLCIEREIKGLIV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           GLPL+ +G    +    + +   +    + +P  + +E  ++  A Q     N     R 
Sbjct: 64  GLPLDESGQNTVQSIHCQNYGIKIAKE-LDLPLAWVNEHSSSWDAGQKYNLQN----DRT 118

Query: 134 QKVDSIAAALILQEVLDRISFLE 156
            K+DS  AAL+L++ L     L+
Sbjct: 119 GKLDSAVAALLLEQWLREGPELQ 141


>gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
           2338]
          Length = 124

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 39  RFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
             A P   L R  +       L+  +    +   ++G+P  + G  GP   +  ++   +
Sbjct: 1   MLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTLAGRHGPAAEAAESYGTAL 60

Query: 98  IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
            +R   VP V+ DERLTTV+A ++L    V  KK+   VD  AA  ILQ  LD 
Sbjct: 61  AERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQAAAVEILQAWLDS 114


>gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum]
          Length = 168

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVR--------KKVTQTALELLSFITTENIAA 70
           +  ID G +R+G+A+SDP R  A P   LVR        ++  +    L    T  ++  
Sbjct: 11  LMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDVTG 70

Query: 71  FIIGLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            + G+P  +++G   P          ++  R + +P    DE  ++  A + +   +  R
Sbjct: 71  LVFGIPYYHLSGDPNPHAPLFLRVARDL-SRDLALPLFLHDEGQSS-EAAREIRKGHPGR 128

Query: 130 KKRIQKVDSIAAALILQEVLD 150
           +   Q +D +AAA +LQ  LD
Sbjct: 129 RNSAQSLDHVAAATLLQGFLD 149


>gi|330826424|ref|YP_004389727.1| Holliday junction resolvase [Alicycliphilus denitrificans K601]
 gi|329311796|gb|AEB86211.1| Holliday junction resolvase [Alicycliphilus denitrificans K601]
          Length = 139

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           Q   + D G KR G+A+     R A P+  + R +       +   I      A ++G+P
Sbjct: 13  QSFLAFDFGLKRTGVAVGTRMLRTATPQGTI-RAEGDARFAAVAERIREWQPDALVVGVP 71

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            + +G+          F   +  R   +     DER +T  A         +        
Sbjct: 72  CHPDGAPHENTARALKFSRQLRGR-FGLQVFEVDERYSTTEALAAGAGDADADAASA--- 127

Query: 137 DSIAAALILQEVL 149
                 +IL++ L
Sbjct: 128 -----CIILEQFL 135


>gi|190573126|ref|YP_001970971.1| Holliday junction resolvase-like protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011048|emb|CAQ44657.1| putative resolvase [Stenotrophomonas maltophilia K279a]
          Length = 164

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           +    +++ +  +   D+G++RIG+AI       A     +           +   +   
Sbjct: 10  DSAAPAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLLKEW 69

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDM 125
                ++G PL ++G + P     + F   + +R   +P V  DER ++V  A++  ++ 
Sbjct: 70  KPDGLVVGDPLTLDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVER 128

Query: 126 NVSRKKRI 133
              RK+R 
Sbjct: 129 AEGRKRRR 136


>gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 129

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 46  FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YV 104
            L R +      E +  +        I+GLP +M G         RA+  ++  R    V
Sbjct: 3   TLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPRQV 62

Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL--DRISFLESSK 159
                DERLTTV+A + L    +  +     VD  AA +IL++ +  +R+S + + +
Sbjct: 63  CVRLVDERLTTVTAHRDLHAAGMKERSFRGIVDQAAAVVILEQAITTERMSGVPAGE 119


>gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
           35110]
 gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
           35110]
          Length = 143

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + +ID GTKR GLA +DP + F+          + +   E+      + I   ++G 
Sbjct: 7   KKRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKL---DGIEKILVGY 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
           P N +GS      +   F+  +      +P    DE  ++ +A ++LI     RK R   
Sbjct: 64  PTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGEKRKSRQKK 123

Query: 134 QKVDSIAAALILQEVLDRIS 153
            ++DS AAAL+LQ  L+R  
Sbjct: 124 GRLDSAAAALLLQNYLERQR 143


>gi|254523604|ref|ZP_05135659.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp.
           SKA14]
 gi|219721195|gb|EED39720.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp.
           SKA14]
          Length = 155

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
             +++ +  +   D+G++RIG+AI       A     +           +   +      
Sbjct: 4   AAAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWAAIERLLKEWKPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             ++G PL ++G   P     + F   + +R   +P V  DER ++V  A++  ++    
Sbjct: 64  GLVVGDPLTLDGQNQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEG 122

Query: 129 RKKRI 133
           RK+R 
Sbjct: 123 RKRRR 127


>gi|171060631|ref|YP_001792980.1| Holliday junction resolvase-like protein [Leptothrix cholodnii
           SP-6]
 gi|170778076|gb|ACB36215.1| Holliday junction resolvase YqgF [Leptothrix cholodnii SP-6]
          Length = 149

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 2/109 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
              ++  Q   S D G KR G+A  +     A P   +  +        +   I      
Sbjct: 8   AAVVRAPQTFLSFDYGRKRTGVASGNRVFGQATPLTTVTAE-GDARFERIARLIAEWQPD 66

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           A ++G+P + +G+        + F   +  R   +P    DER +T   
Sbjct: 67  ALVVGVPRHPDGAPHENTRLAQRFARQLHGR-FRLPVFEVDERYSTTEV 114


>gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
 gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
          Length = 167

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
              + + ++D+G +RIGLA  DP        P L R +       L   +    + A ++
Sbjct: 4   PRPRSVLALDVGRRRIGLAGCDPLGLTVRRLPALARGRFPADLQRLQELLAERRVEALVV 63

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129
           GLPL+  G    +    R +   +      +P  + +E  +T  +A++  +  + S 
Sbjct: 64  GLPLDQAGQPTEQARHCRRYGERLAVG-TGLPLAWVNEHGSTWSAAERHGLHGDRSG 119


>gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia
           R551-3]
          Length = 164

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           ++ +  +   D+G++RIG+AI       A     +           +   I        +
Sbjct: 16  IRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLV 75

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRKK 131
           +G PL ++G + P     + F   + +R   +P V  DER ++V  A++  ++    RK+
Sbjct: 76  VGDPLTLDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEGRKR 134

Query: 132 RI 133
           R 
Sbjct: 135 RR 136


>gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter
           mediatlanticus TB-2]
          Length = 130

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I +ID+G KRIG+A + P      P   ++RK   Q A E+ + +        ++G+
Sbjct: 1   MERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGI 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P     +        + F  N+ID        F DE  T+   ++ +      + KR  +
Sbjct: 60  PK----TNEEMTKRIKHF-TNLID--FNGKIEFVDESFTSAIVEEEIK--GKIKHKRDGR 110

Query: 136 VDSIAAALILQEVL 149
           +DS+AA  IL+  L
Sbjct: 111 IDSLAAKKILESFL 124


>gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX]
 gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase
 gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX]
          Length = 159

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D G  RIG+A SDP    A P   + R         + + +        I+G P ++
Sbjct: 7   LAVDPGAARIGVARSDPDGILAIPVETIRR--GPGDLDRIAALVLEYEAREVIVGYPASL 64

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-------RKKR 132
           +G+EG    + RAF   +  R   VP    DERLTTV+A+  L              + R
Sbjct: 65  SGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRAR 124

Query: 133 IQKVDSIAAALILQEVLD 150
              +D  AA ++LQ  LD
Sbjct: 125 RSVIDQAAATVLLQNALD 142


>gi|297170741|gb|ADI21763.1| predicted endonuclease involved in recombination (possible holliday
           junction resolvase in Mycoplasmas and B. subtilis)
           [uncultured gamma proteobacterium HF0130_22O14]
          Length = 141

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +    + D G  ++G+AI       A P   +V +  +     +   I        I+G 
Sbjct: 2   SSTFIAFDFGMTKMGIAIGQNITNTASPLDPMVMRNGSPDWDLVERLIKEYRPTTIILGK 61

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----DMNVSRKK 131
           P  ++ S    +   +AF  ++ ++       +  E LT+  A++ L     +  +SRK 
Sbjct: 62  PKVIDESSETLMKKIKAFKRSL-EKDFSQNVEWTPEHLTSKDAKEKLKVRRQEGILSRKI 120

Query: 132 RIQKVDSIAAALILQEVLDR 151
              ++DS+AAA+ LQ+ +++
Sbjct: 121 MKGQIDSMAAAIFLQDWMNQ 140


>gi|289664581|ref|ZP_06486162.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289670433|ref|ZP_06491508.1| Holliday junction resolvase-like protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 155

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
              ++ +  +   D+G++RIG+A+       A     +         + L       +  
Sbjct: 4   AGVIRSDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWVALDRVHKEWHPD 63

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
             +IG PL ++  + P      AF   + +R   +P V  DER ++V  AQ+   +    
Sbjct: 64  GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122

Query: 129 RKKRIQ 134
           RK+R  
Sbjct: 123 RKRRRD 128


>gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 129

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 46  FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-V 104
            L R +      E +  +        I+GLP +M G         R +  ++  R    V
Sbjct: 3   TLRRDRYGADLDEAVDLVDEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQRV 62

Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL--DRISFLESSK 159
                DERLTTV+A + L    +  +     VD  AA +IL++ +  +R+S + + +
Sbjct: 63  CVRLVDERLTTVTAHRDLHAAGLKERSFRGIVDQAAAVVILEQAITTERMSGVPAGE 119


>gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 136

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
           +   + D G +R+G+A+ +     A P   +  +        +   I      A ++G+P
Sbjct: 11  RSFLAFDFGVRRVGVAVGNTLLAEARPLKTVAAE-GDARFEAIARLIDEWQPDALVVGVP 69

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
            + +G+E       R F   +  R   +P    DER TTV
Sbjct: 70  FHPDGAEHDNTRRARRFARQLHGR-FRLPVHEVDERYTTV 108


>gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73]
 gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas
           albilineans]
          Length = 165

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 1/115 (0%)

Query: 7   EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
            D   +L+ +  +   D+G +RIG+A+       A     +           L       
Sbjct: 11  TDGAATLRHDGTVLGFDVGHRRIGVAVGSRFGSGARALAVIDVHAQGPDWPALDRLHAQW 70

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                ++G PL ++G++ P      AF   +   +  +P V  DER ++V A Q 
Sbjct: 71  RPHGLVVGDPLTLDGADQPNRKRAHAFAREL-GARYCLPVVLVDERSSSVEAAQR 124


>gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 107

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 2/108 (1%)

Query: 25  GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
           G+ RIG+AISDP   FA    FL  +      L L   I   N+   +IGLP+  NG + 
Sbjct: 2   GSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLAL--LIRKHNVKKVVIGLPIRTNGKKD 59

Query: 85  PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
               +       + +    + F+ WDER TT  AQ  L D  +S KK+
Sbjct: 60  READAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107


>gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli
           95/1000]
 gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli
           95/1000]
          Length = 137

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G K+ G A  D   +   P   +      +    L+  I  + I   + GLPL+
Sbjct: 3   ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E       R F   ++   V V  VF DE  T+  A  IL      +  + +  D 
Sbjct: 63  DEGKESEWCAEIRRFSEFLLK-SVKVNIVFVDEYGTSKEADFILR--GKKKSVKKKANDL 119

Query: 139 IAAALILQEVLDRIS 153
           IAA LIL+  L+ ++
Sbjct: 120 IAAVLILENYLNILN 134


>gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
 gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase
 gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
          Length = 164

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + S+D+G KRIGLA  DP      P P L R +     L L     T ++   ++GLPL
Sbjct: 13  SVLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLVVGLPL 72

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
           +  G    +    R +   +  + + +P  + +E  +T +A ++  +  + + +
Sbjct: 73  DAAGQPTAQAEHCRRYGVRLA-QSLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 125


>gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase
 gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase
 gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum
 gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 147

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT------ENIAAFII 73
            ++DLGTK  G AISD     A      + ++       +L+ I          I   ++
Sbjct: 4   LALDLGTKSCGFAISDLLGIIASGLDNFIYEE--NDFTAVLAKIDEIMINYHHEIDTIVL 61

Query: 74  GLPLNM-NGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSR 129
           G P N+ +GS+  R +   +F   +    +    +  V+ DER +T  A Q L +  V  
Sbjct: 62  GYPTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVKA 121

Query: 130 KKRIQKVDSIAAALILQEVL 149
            K  +  D ++A +IL+  L
Sbjct: 122 AKIKKVKDKMSAVVILESYL 141


>gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
 gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
          Length = 158

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G +RIGLA  DP      P   L R++  +    L        +   ++GLPL+ 
Sbjct: 1   MSLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDR 60

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           NG    +    + +   + +  + +P  + +E  ++ +A + L         R  K+DS
Sbjct: 61  NGQPTEQAMHCQRYGLRLAEA-LQLPLAWINEHSSSWAAGEALGLHG----DRSGKLDS 114


>gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
 gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
          Length = 139

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID G K+ G A  D   +   P   +      +    L+  I  +NI   + GLPL+
Sbjct: 2   VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G E       R F   ++   V V  VF DE  T+  A  IL      +K + +  D 
Sbjct: 62  DEGKESDWCAEIRRFSEFLLK-SVKVDIVFVDEYGTSKEADFILR--GKKKKVKNKANDL 118

Query: 139 IAAALILQEVLDRISF 154
           IAA LIL+  L+ ++ 
Sbjct: 119 IAATLILENYLNVLNM 134


>gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG
           18818]
 gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 140

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N+ I + D+G KRIGLA++  G     P   ++RK   Q + EL   + T  I   ++GL
Sbjct: 3   NKKILACDVGLKRIGLAVTQLGIIL--PIEPIIRKNRNQASKELSEILKTREIEILVVGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KR 132
           P                FV  +          + DE  T++ A Q    M V  +   ++
Sbjct: 61  PSGGEAGHSDTRKRILHFVGLVA---FGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117

Query: 133 IQKVDSIAAALILQEVLDRISFL 155
             ++DS++A LIL+  L+  + L
Sbjct: 118 DGRLDSLSATLILERFLESNNPL 140


>gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 105

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
                 E +   ++G PL+M+G           F   M+  +  +P   +DERLTTVSA+
Sbjct: 2   ADLSRREEVGRIVVGRPLHMSGQPSEMTSRAEKFA-RMLAARTGLPVDLYDERLTTVSAE 60

Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149
           +ILI+ NV R++R   VD+ AA ++L++ L
Sbjct: 61  RILIEQNVRRRERRATVDAAAAQVLLEDYL 90


>gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
 gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
          Length = 126

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 10/132 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +ASID+G KRIG+A+S   +    P+  ++RK   Q + ++ +F+    I   I+G P 
Sbjct: 2   KLASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFPS 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           + +          + FV+ +   K     VF +E ++++ A++++      + KR  +VD
Sbjct: 61  SSD----DMQKRVKHFVNLL---KFEGEIVFQEENMSSIEAEELMK--GDIKYKRDGRVD 111

Query: 138 SIAAALILQEVL 149
           S+AA +IL+  L
Sbjct: 112 SLAAKIILERYL 123


>gi|167972674|ref|ZP_02554951.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167974599|ref|ZP_02556876.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|167976242|ref|ZP_02558519.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|167988740|ref|ZP_02570411.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|168363072|ref|ZP_02696246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195867885|ref|ZP_03079884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273722|ref|ZP_03206257.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554058|ref|YP_002284772.1| hypothetical protein UUR10_0379 [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550702|ref|ZP_03771651.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551167|ref|ZP_03772113.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|226695314|sp|B5ZBI2|RUVX_UREU1 RecName: Full=Putative Holliday junction resolvase
 gi|171903041|gb|EDT49330.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209165|gb|EDU06208.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018995|gb|EDU57035.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997817|gb|EDU66914.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659638|gb|EDX53018.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660462|gb|EDX53720.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249750|gb|EDY74531.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541559|gb|ACI59788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225378982|gb|EEH01347.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379856|gb|EEH02218.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 147

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT------ENIAAFII 73
            ++DLGTK  G AISD     A      + ++     + +L+ I          I   ++
Sbjct: 4   LALDLGTKSCGFAISDLLGIIASGLDNFIYEE--NDFIAVLAKIDEIMINYHHEIDTIVL 61

Query: 74  GLPLNM-NGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSR 129
           G P N+ +GS+  R +   +F   +    +    +  V+ DER +T  A Q L +  V  
Sbjct: 62  GYPTNVYDGSKNKRTYLIESFYTLLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVKA 121

Query: 130 KKRIQKVDSIAAALILQEVL 149
            K  +  D ++A +IL+  L
Sbjct: 122 AKIKKVKDKMSAVVILESYL 141


>gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 140

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  +D G    GL+I+D  + FA     +  +K+      L SF+  E I   +IGL
Sbjct: 1   MAKILGMDYGKVITGLSITDDEQIFAFGLDSVPTEKLMSF---LESFLYHEKIDKIVIGL 57

Query: 76  PLNMNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P  +N   E       + F+++   R   +     DER T+  A   +I++ + +K+R +
Sbjct: 58  PKKLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKK 117

Query: 135 KV-DSIAAALILQEVLDR 151
            + + I+A +ILQ  L R
Sbjct: 118 VILNQISATIILQSYLAR 135


>gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 172

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  + GLAIS  G     P   +VR++  +    +L     +    F++GLP   
Sbjct: 16  VGVDLGDAKTGLAIS-LGGYAPRPL-TVVRQRGDKLLETILQVGIPQRADEFVVGLPKAW 73

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV------PFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           +G +  + +  R+F   + +    V           DE  T+  A   +IDM  +R+ R 
Sbjct: 74  DGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSRK 133

Query: 134 QKVDSIAAALILQEVLDR 151
           +++D+ AA  +L    + 
Sbjct: 134 EQLDAYAATALLCRYFES 151


>gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
 gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168]
          Length = 91

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
           +    I+  ++G PL + G   PR      F  +++ +   +  VF DERLTT  AQ  L
Sbjct: 1   MKEYPISILVLGYPLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFL 59

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
           +D+ +S KKR + +D +AA +IL+  L+
Sbjct: 60  LDLGISFKKRQKVIDKLAAQIILERFLN 87


>gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
 gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
 gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
          Length = 189

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 15  PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFII 73
                  +D+G  R+G+A +DP    A P   L    +  +   EL++     ++ A  +
Sbjct: 32  RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 91

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129
           GLP+N+ G   P       +   +          VP    DERL+TVSAQ  L     S 
Sbjct: 92  GLPVNLRGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGLRAAGRSV 151

Query: 130 KKRIQKVD 137
           K     +D
Sbjct: 152 KDSRGVID 159


>gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 138

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  ID GTKRIGL+I  P R  A     L           +  +I  + I   +IG 
Sbjct: 1   MSKILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGH 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133
           PL  + S  P       F++    +   +     DER ++  A   LI+   N  ++K+ 
Sbjct: 59  PLKSDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQK 118

Query: 134 QKVDSIAAALILQEVL 149
           + +D I+A L+LQ+ +
Sbjct: 119 KILDQISAILLLQDFI 134


>gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales
           bacterium GD 1]
 gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales
           bacterium GD 1]
          Length = 131

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +IDLG KRIGLA S   +    P P ++RK   Q + E+   +    + A +IG+PL  
Sbjct: 4   IAIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVPLG- 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            GS    +    A   N+++       ++ DE  +++ A+ ++      +  R  ++DSI
Sbjct: 62  -GSSEDEMRRRIAHFMNLVN--FEGEILYQDEAGSSLEAENMMK--GEIKYIRDGRIDSI 116

Query: 140 AAALILQEVL 149
           +A +ILQ  L
Sbjct: 117 SAMIILQRYL 126


>gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri
           JV22]
 gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri
           JV22]
          Length = 126

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 10/132 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +ASID+G KRIG+AI         P+  ++RK   Q A ++ +F+    I   I+G P 
Sbjct: 2   KLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFPT 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
               S     +  + FV+ +   K+ +P+ F +E ++++ A++++      + KR  +VD
Sbjct: 61  ----SSEDMQNRIKHFVNLL---KLQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRVD 111

Query: 138 SIAAALILQEVL 149
           S+AA +IL+  L
Sbjct: 112 SLAAKIILERYL 123


>gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase
 gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM
           1251]
          Length = 130

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +IDLG KRIGLA S   +    P   + RK   Q A ++   +    + A ++G+PL  
Sbjct: 4   IAIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIPLGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +  +       R   H M          + DE  +++ A+ ++      +  R  ++DSI
Sbjct: 63  SSED----EMRRRVAHFMNLVAFEGEIFYQDESNSSIEAESMMR--GEIKYIRDGRIDSI 116

Query: 140 AAALILQEVL 149
           +A +ILQ  L
Sbjct: 117 SAMIILQRYL 126


>gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola
           AmH]
 gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 130

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  ID+G KRIG+A S+       P P ++RK   Q A + +  I        ++GL
Sbjct: 1   MEKIIGIDVGLKRIGVAFSN--GSVVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGL 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL    +        R FV  +         VF DE  T+   ++ +    V + K+  +
Sbjct: 59  PL----TNEEMQRRIRHFVSLL---PFEGKIVFVDESYTSAEVEEEIK--GVIKHKKDGR 109

Query: 136 VDSIAAALILQEVL 149
           +DS+ A  +++  L
Sbjct: 110 IDSLVAKKLIENYL 123


>gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
 gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
          Length = 151

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G +RIGLA  D       P P L R    Q    L +     N+   ++GLPLN 
Sbjct: 2   LSLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLND 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130
            G    + H  R +   +  R + +P  F +E  ++  +A++  +  + S +
Sbjct: 62  QGQPTDQAHHCRRYGRRIA-RDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112


>gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri
           RM4018]
 gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction
           resolvase [Arcobacter butzleri RM4018]
          Length = 126

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 10/132 (7%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +ASID+G KRIG+AI         P+  ++RK   Q A ++ +F+    I   I+G P 
Sbjct: 2   KLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFPT 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
               S     +  + FV+ +   ++ +P+ F +E ++++ A++++      + KR  +VD
Sbjct: 61  ----SSEDMQNRIKHFVNLL---ELQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRVD 111

Query: 138 SIAAALILQEVL 149
           S+AA +IL+  L
Sbjct: 112 SLAAKIILERYL 123


>gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102]
 gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase
 gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 157

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +     + S+D+G KRIGLA  DP      P   L R +       L        +   +
Sbjct: 1   MPRPCSVLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
           +GLPL+  G    +      +   +  + + +P  + +E  +T +A ++  +  + S +
Sbjct: 61  VGLPLDAAGQPTAQADHCLRYGRRLA-QALQLPLAWVNEHSSTWAAGERHGLKGDRSGR 118


>gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis]
          Length = 227

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFII 73
           +    +D G + +GLA+S        P   L      +  Q A  +L+    E   A ++
Sbjct: 28  RRALGLDYGRRVVGLAVS-TLGLAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVL 86

Query: 74  GLPLNMNG------SEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125
           GLP+ + G      ++  +    R F  NM        +P    DER +T++A+++L   
Sbjct: 87  GLPVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASS 146

Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
              R    +++DS+AAA+IL+   
Sbjct: 147 GSRRSTLSKRMDSVAAAVILESFF 170


>gi|91787040|ref|YP_547992.1| Holliday junction resolvase-like protein [Polaromonas sp. JS666]
 gi|118597219|sp|Q12EE8|RUVX_POLSJ RecName: Full=Putative Holliday junction resolvase
 gi|91696265|gb|ABE43094.1| Holliday junction resolvase YqgF [Polaromonas sp. JS666]
          Length = 138

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 15/149 (10%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MS+  +  L   L   Q   + D G +R G+A  +   R A P+  +           + 
Sbjct: 1   MSLAAVPHLTAGL---QTFLAFDFGLQRTGVATGNVLTRTATPQATIAAT-GDARLKAIE 56

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
             I      A ++G+P + +G+        + F   +  R   +     DER +T  A  
Sbjct: 57  LRIREWQPDALVVGIPFHPDGASHENTRRAQKFSRQLRAR-FGLKVFEVDERYSTTEALA 115

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
                  +              +IL++ L
Sbjct: 116 GGAADADAASA----------CIILEQFL 134


>gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter
           upsaliensis JV21]
 gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter
           upsaliensis JV21]
          Length = 127

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++DLG KRIGLA+       A P   ++RK   Q A E+   I    I+  I+GLP   
Sbjct: 5   LALDLGLKRIGLALYVEN--IAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLPKG- 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
             SE       + F+  +   +     +F DE  T+  AQ + +    + +K+  K+DS+
Sbjct: 62  GASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQGLGVA---NSRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA ++L+   
Sbjct: 116 AALIMLRGYF 125


>gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
           16294]
 gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
           16294]
          Length = 132

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +IDLG KRIGLA S   +    P P ++RK   Q + E+   I      A +IG+PL  
Sbjct: 4   IAIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVPLGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE         F+ N++D       ++ DE  +++ A+ ++      +  R  +VDS+
Sbjct: 63  S-SEDEMRRRIEHFM-NLVD--FEGKVLYQDEAGSSLEAENMMK--GKIKYIRDGRVDSL 116

Query: 140 AAALILQEVL 149
           +A +ILQ  L
Sbjct: 117 SAMVILQRFL 126


>gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205]
          Length = 167

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +    + + S+D+G KRIGLA  DP      P P L R +      +L + +    I A 
Sbjct: 2   AAPAPRSVLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILAL 61

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
           ++GLPL+       +    R +   +  R + +P  F +E  ++  A + 
Sbjct: 62  VVGLPLDAQQQPTAQAEHCRRYGERLA-RDLDLPLAFVNEYASSWDAGER 110


>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
           RM3195]
 gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
           RM3195]
          Length = 127

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++DLG KRIGLA+       A P   ++RK   Q A E+   I    I+  I+GLP   
Sbjct: 5   LALDLGLKRIGLALYVEN--IAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLPKG- 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
             SE       + F+  +   +     +F DE  T+  AQ + +    + +K+  K+DS+
Sbjct: 62  GASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQDLGVA---NSRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA ++L+   
Sbjct: 116 AALIMLRGYF 125


>gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis
           ATCC BAA-381]
 gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 127

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            +D+G KRIG+A+     +   P+  ++RK   Q A E+   +    +   ++G+PL  +
Sbjct: 6   GLDVGLKRIGVAL--AFDKIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPLGGS 63

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            SE         F   +         +F DE  ++V A ++      S KK+  K+DS+A
Sbjct: 64  -SEDEMKRRITHFCSLL---NFKGEIIFMDESYSSVEADEM---RQFSGKKKDGKLDSLA 116

Query: 141 AALILQEVL 149
           A +IL+  L
Sbjct: 117 AMVILKRYL 125


>gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
 gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
          Length = 145

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGL 75
           P   +DLG K +G++IS     F+     L     +       L   I  +NI   I+GL
Sbjct: 6   PYLGLDLGEKTLGISIS-EAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGL 64

Query: 76  PLNMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           P +MN   G +   +  F   + D  K+ V  + WDERL+T  +   L + N ++KK  Q
Sbjct: 65  PKHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQ 124

Query: 135 KVDSIAAALILQEVLDRISFL 155
             D +AA  ILQ  LD  S +
Sbjct: 125 LKDEVAAMFILQNFLDYQSNI 145


>gi|121608487|ref|YP_996294.1| Holliday junction resolvase-like protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121553127|gb|ABM57276.1| Holliday junction resolvase YqgF [Verminephrobacter eiseniae
           EF01-2]
          Length = 161

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 14/143 (9%)

Query: 9   LVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
           L  +L P   +   + D G KR+G+A  +     A P+  +          ++   I   
Sbjct: 27  LAPALVPAHVRTFLAFDFGLKRVGVASGNRLLLRAAPQSTIAAVGA-ARWAQVAQRIGQW 85

Query: 67  NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
              A +IG+PL+ +G+          F   +  R   +P    DER +T  A        
Sbjct: 86  QPDALVIGVPLHPDGASHENTALALRFGRQLRGR-FGLPVFEVDERYSTTEAIAGGAKDA 144

Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
            +              +IL++ L
Sbjct: 145 DAAAA----------CIILEQFL 157


>gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 190

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 14/137 (10%)

Query: 20  ASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             +D G  R G+A++   DP      P   L     T+    ++  +  E  +  ++GLP
Sbjct: 21  IGVDYGLVRTGVAVTVGYDP-----KPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLP 75

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
           L+ NG+   + + T  FV  +  +        V    +DER T+ +A       N  +  
Sbjct: 76  LHKNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRNPHQPL 135

Query: 132 RIQKVDSIAAALILQEV 148
               +D+ AA +IL+  
Sbjct: 136 -YGTLDADAACIILENY 151


>gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT
           9313]
 gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase
 gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 161

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           +  +    + + S+DLG +RIGLA  DP      P P L RK   +    L    T+  +
Sbjct: 1   MTATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKV 60

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
              ++GLPL+  G    +      +   +  R + +P    +E  ++ +A +        
Sbjct: 61  EGLVVGLPLDAKGLPTDQARHYERYGQRLA-RALKLPLALVNEHSSSWAAAERYNLQG-- 117

Query: 129 RKKRIQKVDS 138
              R  ++DS
Sbjct: 118 --DRSGQLDS 125


>gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
          Vollum]
          Length = 75

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
           I  +D+GTK +G+AISD     A     +    ++       +   +   ++   ++GL
Sbjct: 2  RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61

Query: 76 PLNMNGSEGPRVHS 89
          P NMNG+ GPR  +
Sbjct: 62 PKNMNGTIGPRGEA 75


>gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus
           525.92]
 gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 127

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 11/134 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++   +ID+G KR+G+A          P+  ++RK   Q A E+ + +        ++G+
Sbjct: 2   SEKFMAIDVGLKRVGVAFG--TGGIVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGV 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   + SE         FV  +   ++    V+ DE  ++  A +I  D      KR  +
Sbjct: 60  PKGGS-SEDEMRRRIEHFVSLL---EISAKIVYQDEAFSSFEASEIYTDT-----KRDGR 110

Query: 136 VDSIAAALILQEVL 149
           +DS+AA LIL+  L
Sbjct: 111 LDSVAAMLILKRYL 124


>gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101]
          Length = 151

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIGLA  D       P P L R +       L S +    I A ++GLPL+ 
Sbjct: 2   LALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDA 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129
                 +    R +   +  R + +P    +E  ++  +A++  +  + S 
Sbjct: 62  QQQPTEQAEHCRRYGERLA-RHLALPLALVNEFASSWAAAERHGLHGDRSG 111


>gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae]
          Length = 74

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+E P  +  R F + +  R   +     DERLTT+ A+  L +    R     K+DS
Sbjct: 1   MDGTEQPISNQARKFANRLHGR-FGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59

Query: 139 IAAALILQEVLDR 151
           I+A +IL+   ++
Sbjct: 60  ISAVIILESWFEQ 72


>gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3]
          Length = 78

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query: 1  MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
          M++L IE++  +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T  A  LL
Sbjct: 1  MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60

Query: 61 SFITTENIAAFIIGLPLN 78
           F   E +A F+IGLP+N
Sbjct: 61 DFAAKERVAGFVIGLPMN 78


>gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
           SUMu002]
 gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
           SUMu004]
 gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
           SUMu011]
 gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
           SUMu002]
 gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
           SUMu004]
 gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
           SUMu011]
          Length = 122

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 40/107 (37%)

Query: 45  PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
             + R +  +    L +          I+GLP  +    G            +  R    
Sbjct: 2   ETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPT 61

Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
           P    DERLTTVSAQ+ L    V   ++   +D  AA  ILQ  LD 
Sbjct: 62  PVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDE 108


>gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH]
          Length = 140

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITT--ENIAAFI 72
            Q I  ID G KRIG A+++   RF  P      +    Q    L   +      +   +
Sbjct: 1   MQYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IG P + +     +V S   FV  +I  +  VP    DE  TT   +  L ++ +  +  
Sbjct: 61  IGFP-HFHYQSSIQV-SIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117

Query: 133 IQKVDSIAAALILQEVLDR 151
            +  D++AA LIL+  L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136


>gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803]
 gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803]
          Length = 159

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G +RIGLA  DP        P L R    Q    L +     N+   ++GLPL+ 
Sbjct: 2   LSLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDD 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130
            G    + H    +   +  R + +P  F +E  ++  +A++  +  + S +
Sbjct: 62  QGQRTDQAHHCHRYGQRIA-RDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112


>gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 146

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
           I +ID+G KRIG+A S   R        ++RK   Q A  + + +        ++G+P  
Sbjct: 6   IIAIDIGLKRIGVAKS--IRGIPLCLEPILRKNRNQAANAVRTLVLELQANVLVVGIPFV 63

Query: 78  ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-- 131
                 N S        + FV  +++ +  +  VF+DE  ++  A + L D  + +K   
Sbjct: 64  DDVSKANDSICAMQRRIKHFVG-LLELESKIEIVFFDESFSSKEALEKLDDKKMRKKAHS 122

Query: 132 RIQKVDSIAAALILQEVL 149
           +   +DS+AA +IL+  L
Sbjct: 123 KDGSLDSLAALVILERYL 140


>gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
 gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
          Length = 214

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R GLA+   G     P   L  +   +  L LL     +     IIGLP++ 
Sbjct: 75  LGVDLGDARTGLAVG-RGITLPRPLTVLKLR-GQKLELTLLDVARQQEADELIIGLPVSA 132

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+ V  +  +     +     DE  T+  A + +I   V +  R  + D
Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192

Query: 138 SIAAAL 143
           + AA +
Sbjct: 193 AYAAVV 198


>gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
 gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
          Length = 151

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            S+D+G KRIGLA  D       P P L R +     L L       ++   ++GLPL+ 
Sbjct: 2   LSLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDS 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
            G    +    + +   +  + + +P  + +E  +T +A ++  +  + + +
Sbjct: 62  AGQPTVQAVHCQRYGLRLA-QTLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 112


>gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 124

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID+G KRIG+A+    R+   P+  ++RK   Q A ++ + +        ++G+PL
Sbjct: 2   SIMAIDVGLKRIGVAL--AVRQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
               SE         FV  +   +     V+ DE +++  A +I  +      +R  ++D
Sbjct: 60  G-GPSEDEMRRRIEHFVSLL---EFDGEVVYQDEAMSSFEASEIYAES-----RRDGRLD 110

Query: 138 SIAAALILQEVL 149
           SIAA +IL+  L
Sbjct: 111 SIAAMIILKRYL 122


>gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 127

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A   L     + +K+  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA +++++  
Sbjct: 116 AAFIMIKDYF 125


>gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 127

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A +  I      +K+  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEALEYGIA---DTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA +++++  
Sbjct: 116 AAFIMIKDYF 125


>gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus
           ATCC 51449]
 gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase
 gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 138

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           N  I + D+G KRIGLA     +    P P ++R    Q A EL + +   NI   ++G+
Sbjct: 2   NHCILACDVGLKRIGLAT--LKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKKR 132
           P   +G E     + +   H +          F +E  T+ +A Q L      N +R ++
Sbjct: 60  P---SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116

Query: 133 IQKVDSIAAALILQEVL 149
             ++DS++A  ILQ  +
Sbjct: 117 DGRIDSLSACEILQRYI 133


>gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
 gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
          Length = 140

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
               ID G   +GL+ISDP  +   P   + R    +   ++   I  +++ A ++G PL
Sbjct: 2   RYLGIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             +        S       +    + V  + +DER +++ A   L    +   K   K+ 
Sbjct: 62  RTD-FSSASSKSILKVKKKL--ETIGVKVILFDERYSSIEA---LKLQKILGNKDKGKIH 115

Query: 138 SIAAALILQEVLDRISFLESSKG 160
            IA++++L+  LD +S  + + G
Sbjct: 116 EIASSIVLKSFLDFLSNTKKNIG 138


>gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 127

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A   L     + +K+  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           +A +++++  
Sbjct: 116 SAFIMIKDYF 125


>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 238

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R G+AIS        P   L   +  +    LL     E +  FIIGLP + 
Sbjct: 68  LGVDLGLSRTGVAIS--KGYTVKPLTVLK-SRGQKLETRLLEIAEEEEVDEFIIGLPRSS 124

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E  + +  R+    +  +          +DE  TT  A   +I M +S+ +R  + D
Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 184

Query: 138 SIAAALILQEVL 149
           + AA ++L+   
Sbjct: 185 AYAAVILLERYF 196


>gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase
 gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 129

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A +  I    + +K+  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKKALEYGIA---NTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA +++++  
Sbjct: 116 AAFIMIKDYF 125


>gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           RM1221]
 gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase
 gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase
 gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase
 gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           RM1221]
 gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 127

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A   L     + +K+  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           +A +++++  
Sbjct: 116 SAFIMIKDYF 125


>gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis
           MIT 98-5491]
 gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 133

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            Q I ++D+G KRIG+A S        P P ++RK   Q A E+   I    I   I+G+
Sbjct: 1   MQSILALDIGLKRIGIAKS--IHNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGI 58

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P   + +        + FV  +++    +   F DE  ++  A Q +   +   KK+   
Sbjct: 59  PKE-SETAAEMERRIKHFVA-LLEIPDNIKIHFVDESFSSFEALQRM-QGSKKSKKKDGT 115

Query: 136 VDSIAAALILQEVL 149
           +DS+AA +IL+  L
Sbjct: 116 LDSLAAMIILERFL 129


>gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination
          (possible Holliday junction resolvase in Mycoplasmas
          and B. subtilis) [Streptococcus pyogenes M49 591]
          Length = 83

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
            +D+G+K +G+AISDP    A     +    +K       L   +    +  F+IGLP 
Sbjct: 1  MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60

Query: 78 NMNGSEGPRVHSTRAFV 94
          NMN + GPRV ++  + 
Sbjct: 61 NMNNTNGPRVDASITYG 77


>gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129]
 gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase
 gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129]
          Length = 140

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITT--ENIAAFI 72
            Q I  ID G KRIG A+ +   RF  P      +    Q    L   +      +   +
Sbjct: 1   MQYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           IG P + +     +V S   FV  +I  +  VP    DE  TT   +  L ++ +  +  
Sbjct: 61  IGFP-HFHYQSSIQV-SIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117

Query: 133 IQKVDSIAAALILQEVLDR 151
            +  D++AA LIL+  L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136


>gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 127

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A   L     + +++  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFIDESGTSKEA---LKYGVANAREKDGKLDSL 115

Query: 140 AAALILQEVL 149
           AA +++++  
Sbjct: 116 AAFIMIKDYF 125


>gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase
 gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 137

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLN 78
             ID G  RIG AISD    F+            +  ++ +   +    I  FIIG PLN
Sbjct: 4   LGIDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLN 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
             G +         F+ ++ ++         +E  ++  A +IL   N+  KK+  K D 
Sbjct: 64  SRGEKTKTCLLIDEFIIHL-EKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDM 122

Query: 139 IAAALILQEVLD 150
           +AA +ILQ+ LD
Sbjct: 123 LAAKIILQDYLD 134


>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
 gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
          Length = 239

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             IDLG  R GLAIS        P   L  +   +    LL     E    FIIGLP + 
Sbjct: 77  LGIDLGLSRTGLAIS--KGFSFKPLTVLELR-GQKLETRLLEIAEDEEADEFIIGLPKSW 133

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E  + +  R+    +  R           DE  T+  A   +I++ +S+  R + +D
Sbjct: 134 DGKETSQCNKVRSVAGRIAVRAAERGWRVYLQDEHGTSTDATYWMINVGLSKGARQKSID 193

Query: 138 SIAAALILQEV 148
           + AA ++L+  
Sbjct: 194 AYAAVMVLERY 204


>gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
           RM2228]
 gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli
           JV20]
 gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
           RM2228]
 gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli
           JV20]
          Length = 126

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+     + A P   ++RK   Q A E+ + +   +I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC--IDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGG 61

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A   L     + +K+  K+DS+
Sbjct: 62  S-SEEEMTRRIKHFVSLL---EFDKEIRFVDESGTSKEA---LGYGVANTRKKDAKLDSL 114

Query: 140 AAALILQEVL 149
           AA +++++  
Sbjct: 115 AALIMIKDYF 124


>gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase
 gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 127

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +  E       + FV  +   +      F DE  T+  A   L     + +K+  K+DS+
Sbjct: 63  SREE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           +A +++++  
Sbjct: 116 SAFIMIKDYF 125


>gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
          Length = 71

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           + + D GTK IG+AI       A P P +  +  T     +   +        I+GLPL
Sbjct: 4  TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63

Query: 78 NMNGSEGP 85
          NM+G+E P
Sbjct: 64 NMDGTEQP 71


>gi|297626344|ref|YP_003688107.1| Holliday junction resolvase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922109|emb|CBL56677.1| Holliday junction resolvase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 181

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G  RIG+A  D     A+P   +     + T   L + +        I+G+P ++
Sbjct: 25  LCLDWGKARIGVAACDRDGLLAYPVETVA--NGSGTMKRLKALVDEYEPFEIIMGMPTDL 82

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G +G    +        + R ++      DERLTT +A + L       + R   +D  
Sbjct: 83  RGRQGIAASAMIDNARR-VTRALHRDVRLVDERLTTAAATRRLAAAGRDSRHRRSVIDQA 141

Query: 140 AAALILQEVLDRISFLESSKG 160
           AA  IL++ ++       + G
Sbjct: 142 AAVAILEQAIEMEKRSGHAPG 162


>gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera]
          Length = 213

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R GLA+S        P                        +  FIIGLP++ 
Sbjct: 67  LGVDLGMSRTGLALS--KGFSVRPLS---------------------EVDEFIIGLPVSD 103

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E P+ +  R+    +  R           DE  T+  A   +IDM  S+  R   +D
Sbjct: 104 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSID 163

Query: 138 SIAAALILQEVL 149
           + AA ++L+   
Sbjct: 164 AYAAMMVLERYF 175


>gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 127

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            +   +ID+G KRIGLA          P   ++RK   Q A ++   +        ++G+
Sbjct: 2   REKFMAIDVGLKRIGLAFG--FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGV 59

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+  + SE         FV  +    +    V+ DE  ++  A +I  D      +R  +
Sbjct: 60  PIGGS-SEDEMRRRIEHFVSLL---DMQANIVYQDEAFSSSEASEIYTDT-----RRDGR 110

Query: 136 VDSIAAALILQEVL 149
           +DS++AA+IL+  L
Sbjct: 111 LDSVSAAIILKRYL 124


>gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
 gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
          Length = 186

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 3   ILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           IL    L KSL+    +    ID G +R G+A++        P   + + K      +LL
Sbjct: 8   ILPNARLKKSLETRKLRRSVGIDYGLERTGIAVT-FCGLAPRPLS-VSKLKGDNLIKKLL 65

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSA 118
           S    E    FI+GLP + +  E  + + TR F   +     +  V     DE +T+  A
Sbjct: 66  SVAKKEKADEFIVGLPRSWDAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDA 125

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALI 144
            + +I    ++K R  +VD+ AA L+
Sbjct: 126 LEFMIYRGSTKKSRRLEVDAYAAVLM 151


>gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 130

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +IDLG KRIG+A + P  +   P   ++RK  TQ A EL   +  +  +  ++G+P  
Sbjct: 2   IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
              SE       R F   +          F DE  ++  A +           +  + DS
Sbjct: 61  -GASEEEMSRRIRHFASLL---DFDGEIKFQDESFSSAEAAEFASKC-AKGGGKDPRFDS 115

Query: 139 IAAALILQEVLDRI 152
           IAA +ILQ  L  +
Sbjct: 116 IAATIILQRFLASM 129


>gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 172

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
            I  +D+G  R+G+AISDP +  A P   +  K       EL     T NI   +IG P 
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPLMTIELKN-KDLFDELDKIFHTYNIEKVVIGYPL 60

Query: 77  --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
             L+ +  +  ++      + + I  +  V  V WDER +T + ++++ +    +K+R Q
Sbjct: 61  SKLHPDLKD-EKLKKIDE-ISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRRQ 118


>gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN]
 gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN]
          Length = 138

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  ID G KRIGL+I++  R  A     +    +      L  ++  E+I   +IGL
Sbjct: 1   MSKILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNI---ICTLYKYLKYEDIDTIVIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKR 132
           P+  + S  P     + F+  + ++   +     DER T+  A   LI+  +     KK 
Sbjct: 58  PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117

Query: 133 IQKV--DSIAAALILQEVL 149
              +  D I+A ++LQE +
Sbjct: 118 KNFLDKDKISATILLQEYI 136


>gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
 gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
          Length = 148

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 23  DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
           D+G KRIGLA  D       P P L R +     L L       ++   ++GLPL+  G 
Sbjct: 2   DVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAGQ 61

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
              +    + +   +  + + +P  + +E  +T +A ++  +  + + +
Sbjct: 62  PTVQAVHCQRYGLRLA-QTLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 109


>gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri GWSS]
 gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase
 gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein
           [Candidatus Sulcia muelleri GWSS]
          Length = 138

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  ID G KRIGL+I++  R  A     +    +      L  ++  E+I   +IGL
Sbjct: 1   MSKILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNI---ICTLYKYLKYEDIDTIVIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P+  + S  P     + F+  + ++   +     DER T+  A   LI+  +   +  + 
Sbjct: 58  PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117

Query: 136 -----VDSIAAALILQEVL 149
                 D I+A ++LQE +
Sbjct: 118 QNFLDKDKISATILLQEYI 136


>gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 127

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            ++D+G KRIG+A+    ++ A P   ++RK   Q A E+ + +    I+  I+G+P   
Sbjct: 4   LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGG 62

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           + SE       + FV  +   +      F DE  T+  A   L     + +K+  K+DS+
Sbjct: 63  S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115

Query: 140 AAALILQEVL 149
           +A +++++  
Sbjct: 116 SAFIMIKDYF 125


>gi|319787649|ref|YP_004147124.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466161|gb|ADV27893.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis
           11-1]
          Length = 156

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
            P   +   D+G++RIG+A+             +           L    +       I+
Sbjct: 11  SPEAIVLGFDVGSRRIGVAVGSAFGGA-RAVAVVNVHAAGPDWAALDRLRSQWGPGGLIV 69

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS---AQQILIDMNVSRK 130
           G PL ++G + P     RA   + +  +  +P    DER ++V               R+
Sbjct: 70  GDPLTLDGEDQPARRRARA-FAHALRERYGLPVGMVDERSSSVEAAQRFARARASGTRRR 128

Query: 131 KRIQKVDSIAAALILQEVL 149
           +  + +D+ AAA+I++  L
Sbjct: 129 RDAENLDAEAAAVIIERWL 147


>gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 124

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID+G KRIG+A+     +   P+  ++RK   Q A ++ + +        ++G+PL
Sbjct: 2   SIMAIDVGLKRIGVAL--AVGQTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPL 59

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             + SE         FV  +   +     V+ DE +++  A +I  +      +R  ++D
Sbjct: 60  GGS-SEDEMRRRIAHFVSLL---EFDGEVVYQDEAMSSFEASEIYAEG-----RRDGRLD 110

Query: 138 SIAAALILQEVL 149
           SIAA ++L+  L
Sbjct: 111 SIAAMIVLKRYL 122


>gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37]
 gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase
 gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37]
 gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 138

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITT-ENIAAFIIGL 75
           I +ID G K+IG AI++   ++         K   +TA+    L        +   +IG 
Sbjct: 4   ILAIDFGLKKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGF 63

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P     S+   +         +++++  +P +  DE  TT + +  LI M++  K   + 
Sbjct: 64  PKFHYYSD---IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKA 120

Query: 136 VDSIAAALILQEVL 149
            D++AA LIL+   
Sbjct: 121 KDTLAAVLILERFF 134


>gi|330872143|gb|EGH06292.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 84

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133
           +PLNM+G+          F   + + +  V     DERLTT  A+ + +         R 
Sbjct: 1   MPLNMDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRN 59

Query: 134 QKVDSIAAALILQEVLDRISFL 155
             VD+IAAAL+LQ  LD    L
Sbjct: 60  NPVDAIAAALLLQGWLDEHPEL 81


>gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211]
 gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase
 gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus
           marinus str. MIT 9211]
          Length = 145

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           ++ + S+D+G +RIG+A  DP          + R      A +L       ++   IIGL
Sbjct: 6   SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+  G E  +      +  N+    + +P  + +E  +T  A Q     N     R  K
Sbjct: 66  PLSDLGKETKQSSYCYTYGINIAKE-LNLPLAWVNEHSSTWEAGQRFKLQN----DRSGK 120

Query: 136 VDS 138
           +DS
Sbjct: 121 LDS 123


>gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal
           Fragment)
          Length = 98

 Score = 90.0 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+G  RIGLA+ + G   A  R +LVRK + +    LL F+  E +   ++GLPL
Sbjct: 2   RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPL 61

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
             +  E  +       V  +  R   V    WDER TT 
Sbjct: 62  RTDLKESAQAGKVLPLVEALRAR--GVEVELWDERFTTK 98


>gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           bilis ATCC 43879]
 gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           bilis ATCC 43879]
          Length = 160

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 29/160 (18%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74
           I  ID G KR+G+A     +    P   ++RK   Q + +L + +            ++G
Sbjct: 3   IFGIDFGLKRLGVAK--VVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60

Query: 75  LPLNMN--------------------GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLT 114
           +P +M+                       G      +   H +         ++ DE  +
Sbjct: 61  MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120

Query: 115 TVSAQQILIDMNVSRKK---RIQKVDSIAAALILQEVLDR 151
           +  A + L+D   +++K   +   +DSI+A +IL+  L+R
Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160


>gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
           acid binding / recombinase [Arabidopsis thaliana]
 gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana]
          Length = 254

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +DLG  R G+AIS        P   L   +  +    LL     E    FIIGLP + 
Sbjct: 84  LGVDLGLSRTGIAIS--KGYTVKPLTVLK-SRGQKLETRLLEIAEEEEADEFIIGLPRSS 140

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +G E  + +  R+    +  +          +DE  TT  A   +I M +S+ +R  + D
Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 200

Query: 138 SIAAALILQEVL 149
           + AA ++L+   
Sbjct: 201 AYAAVILLERYF 212


>gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
 gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
          Length = 159

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 14/132 (10%)

Query: 22  IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
           +D+  +RIG A+S    R A  R  + R+++      +   +        ++GLPL  +G
Sbjct: 36  LDVSKRRIGFAVSQ--GRLAFGRGSVERRRLPLDLKAVRLKVEDTGAEVLVLGLPLRTDG 93

Query: 82  SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
           +  P     R+F   + ++       + DER TT  A          R    + +D  AA
Sbjct: 94  AHSPAADRVRSFGRVLEEKGYR--VEYQDERFTTQRA----------RALGAEDLDEAAA 141

Query: 142 ALILQEVLDRIS 153
             IL+  L R++
Sbjct: 142 VQILELWLTRMA 153


>gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 124

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID+G KRIG+A++        P   ++RK   Q A + L  +  +N    ++GLP  
Sbjct: 2   IVAIDVGLKRIGVAVA-VLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKG 60

Query: 79  MNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
             GS E       + F+  +         ++ DE  ++  A +      +S+  +  + D
Sbjct: 61  --GSCEDEMERRIKHFISLV---GFDSEIIYVDEAYSSCEASE------LSKDSKDGRFD 109

Query: 138 SIAAALILQEVLD 150
           SIAA +IL+  L+
Sbjct: 110 SIAAMVILKRYLN 122


>gi|146329693|ref|YP_001209982.1| hypothetical protein DNO_1098 [Dichelobacter nodosus VCS1703A]
 gi|146233163|gb|ABQ14141.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 129

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +  ID+GT   G+AI       A P            A    + +    +   +IGLP  
Sbjct: 5   VLGIDVGTYHTGVAIGQSVTGLAKPLQRFNLPLKQVHADTFSALVQQWKVNCIVIGLPSL 64

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G + P            I     VP  F DE LT+ +AQ       +   K I K DS
Sbjct: 65  ADGKKHPLSDEIHRLADECIK-LYGVPVHFIDETLTSHAAQ-------MRFPKTIDK-DS 115

Query: 139 IAAALILQEVL 149
            AAA+I+++ L
Sbjct: 116 AAAAVIVEDFL 126


>gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
 gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
          Length = 134

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NKSYTDTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 76

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           MN + GP+     +FV +++ ++  +   + DER+TT+ + ++L+DM+V R+ R + +D 
Sbjct: 1   MNNTLGPQAMKVISFV-DLLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59

Query: 139 IAAALILQEVLDRIS 153
           IAA+ ILQ  LD  S
Sbjct: 60  IAASFILQTYLDGRS 74


>gi|325335422|gb|ADZ11696.1| Resolvase, holliday junction-type, YqgF-like protein [Riemerella
           anatipestifer RA-GD]
          Length = 119

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I +ID G  R G+A +D  +  A     +   ++      L  +I    + A ++G 
Sbjct: 1   MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSF---LSEYIHNNAVEAVVVGY 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
           P+++ G+      S   F+     +   +     DER T+  A   +    
Sbjct: 58  PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSG 108


>gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Gambia94/24]
          Length = 134

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  ++V A + L  +    KK   +  +
Sbjct: 58  -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|261839186|gb|ACX98951.1| Holliday junction resolvase-like protein [Helicobacter pylori 52]
          Length = 134

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFEGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32]
          Length = 134

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF DE  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
 gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
          Length = 141

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I  +D+G  RIG+A  D         P L R       L L   I+  ++ A +IG+PL
Sbjct: 9   SILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVEALVIGIPL 68

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           N       +    R +  ++  + + +P  + +E  +T S      D       +  ++D
Sbjct: 69  NDLAQITKQAIYCRRYGKHLA-QTLRLPVAWVNENGSTWS----TSDQYKIYNDKSGRLD 123

Query: 138 SIAAALILQEVLDRIS 153
           S+ AAL+L++ +   +
Sbjct: 124 SMVAALLLEQWIKERN 139


>gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis
           SK1302]
 gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis
           SK1302]
          Length = 61

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 98  IDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDR 151
           ++    +P  + DERLTTV+A+++LI+  ++SR KR + +D +AA LILQ  LDR
Sbjct: 5   LEELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59


>gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori
           India7]
          Length = 134

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R+   Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAV--LLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  ++V A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLEHLGNKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
 gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
          Length = 206

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 24/138 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+A              L +K +      L  FI        I GLPL+
Sbjct: 2   IVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T A                 DERLTT   ++I            +K D+
Sbjct: 52  MSGKYTQQTFKTIAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKKDDA 97

Query: 139 IAAALILQEVLDRISFLE 156
           ++AALI Q   +  S  E
Sbjct: 98  VSAALIFQSFFENSSVCE 115


>gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Shi470]
 gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase
 gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Shi470]
          Length = 134

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACGILERY 126


>gi|317181677|dbj|BAJ59461.1| Holliday junction resolvase-like protein [Helicobacter pylori F57]
          Length = 134

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +N+   ++G P  
Sbjct: 2   ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADMNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
 gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5]
 gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
          Length = 131

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIGLAI    ++   P   + R    Q +LELL  + T+     I+GLP  
Sbjct: 2   IIACDIGLKRIGLAIY--AQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
                    ++TR  V + I+   + P ++ +E  ++V A   L  ++  ++++  K   
Sbjct: 58  ------HACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111

Query: 136 VDSIAAALILQEVLDR 151
           +DS+AA  IL+  L +
Sbjct: 112 LDSLAACEILRRYLAQ 127


>gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 156

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%)

Query: 8   DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           DL  S+   + I   D+G KRIG+A+         P   ++R    Q + +L   +  +N
Sbjct: 14  DLTSSIACKRLIIG-DVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKN 70

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           I   ++G P   N S          F+  +         VF +E  +++ A + L  +  
Sbjct: 71  IQVLVVGKP---NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGK 124

Query: 128 SRKK---RIQKVDSIAAALILQEV 148
             K+   +  ++DS++A  IL+  
Sbjct: 125 KNKRLATKDGRLDSLSACRILERY 148


>gi|307637029|gb|ADN79479.1| hypothetical protein hp908_0350 [Helicobacter pylori 908]
 gi|325995622|gb|ADZ51027.1| Holliday junction resolvase like protein [Helicobacter pylori 2018]
 gi|325997218|gb|ADZ49426.1| Putative holliday junction resolvase [Helicobacter pylori 2017]
          Length = 134

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  ++V A   L  +    K+   +  +
Sbjct: 58  -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYDNLEHLGKKNKRLATKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|261837774|gb|ACX97540.1| hypothetical protein KHP_0327 [Helicobacter pylori 51]
          Length = 134

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                    ++   +   ++D       VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  --NESYADTNACIEYFIKLLD--FKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|78213389|ref|YP_382168.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605]
 gi|146325620|sp|Q3AIG9|RUVX_SYNSC RecName: Full=Putative Holliday junction resolvase
 gi|78197848|gb|ABB35613.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605]
          Length = 158

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I S+D+G +RIGLA  D       P   L R +     + L +     ++   ++GLPL
Sbjct: 7   SILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLQAHCCERSVQGLVVGLPL 66

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
           +  G    +    + +   +          + +E  +T +A +Q  +  + S +
Sbjct: 67  DAAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAAGEQFGLKGDRSGR 119


>gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
 gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
          Length = 127

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 12/133 (9%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
              D+G KRIGLA+         P P ++R    Q   +L  F+  +     ++GLP   
Sbjct: 2   VGCDVGLKRIGLALYTQETIL--PMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP--- 56

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136
                     TRA V + I+   + P  + DE  ++  AQ+ +  +   ++++ +K   +
Sbjct: 57  ----NACYTDTRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGIL 112

Query: 137 DSIAAALILQEVL 149
           DS+AA ++L+  L
Sbjct: 113 DSLAACILLERYL 125


>gi|217031561|ref|ZP_03437066.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128]
 gi|298736721|ref|YP_003729251.1| putative Holliday junction resolvase [Helicobacter pylori B8]
 gi|216946761|gb|EEC25357.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128]
 gi|298355915|emb|CBI66787.1| putative holliday junction resolvase [Helicobacter pylori B8]
          Length = 134

 Score = 84.6 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30]
          Length = 134

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|308061685|gb|ADO03573.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Cuz20]
          Length = 134

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8]
 gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase
 gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 218

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 24/141 (17%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I ++D G ++ G+A              L +K +      L  FI        I GL
Sbjct: 11  GKVIVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGL 60

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           PL+M+G    +   T A                 DERLTT   ++I            ++
Sbjct: 61  PLSMSGKYTQQTFKTVAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKR 106

Query: 136 VDSIAAALILQEVLDRISFLE 156
            D+++AALI Q   +  S  E
Sbjct: 107 DDAVSAALIFQSFFENSSVCE 127


>gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38]
 gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38]
          Length = 134

 Score = 83.8 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  +++ A   L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFI-KLVD--FKGEIVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|315586327|gb|ADU40708.1| Holliday junction resolvase family protein [Helicobacter pylori
           35A]
          Length = 134

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLTIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198]
 gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198]
          Length = 131

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            + D+G KRIG+A          P   ++R    Q A +L   +  +N    I+G+P + 
Sbjct: 2   IACDIGLKRIGIAG--LIEGIILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSG 59

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136
           N  +  R      FV  +   +     ++ +E  T++ A+Q L  +   R++  QK   +
Sbjct: 60  NAEDTKR--RIMFFVSLL---ETSAKILYVNEDCTSLEARQDLSHLKKQRRQNAQKNGRI 114

Query: 137 DSIAAALILQEVL 149
           DS+AA  ILQ  L
Sbjct: 115 DSLAACKILQRYL 127


>gi|317177150|dbj|BAJ54939.1| Holliday junction resolvase-like protein [Helicobacter pylori F16]
          Length = 134

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
 gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
 gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
 gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
          Length = 206

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 24/138 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+A              L +K +      L  FI        I GLPL+
Sbjct: 2   IVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T A                 DERLTT   ++I            ++ D+
Sbjct: 52  MSGKYTQQTFKTVAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKRDDA 97

Query: 139 IAAALILQEVLDRISFLE 156
           ++AALI Q   +  S  E
Sbjct: 98  VSAALIFQSFFENSSVCE 115


>gi|308063196|gb|ADO05083.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Sat464]
          Length = 134

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACGILERY 126


>gi|308182507|ref|YP_003926634.1| Holliday junction resolvase-like protein [Helicobacter pylori
           PeCan4]
 gi|308064692|gb|ADO06584.1| Holliday junction resolvase-like protein [Helicobacter pylori
           PeCan4]
          Length = 134

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACGILERY 126


>gi|210134529|ref|YP_002300968.1| Holliday junction resolvase-like protein [Helicobacter pylori P12]
 gi|226725526|sp|B6JKR0|RUVX_HELP2 RecName: Full=Putative Holliday junction resolvase
 gi|210132497|gb|ACJ07488.1| holliday junction resolvase [Helicobacter pylori P12]
          Length = 134

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  +++ A   L  +    K+   +  +
Sbjct: 58  -NESYADTNVRIEHFI-KLVD--FTGEIVFINEDNSSIEAYDNLEHLGRKNKRLATKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83]
          Length = 134

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  +         VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|15611385|ref|NP_223036.1| Holliday junction resolvase-like protein [Helicobacter pylori J99]
 gi|32130075|sp|Q9ZMA5|RUVX_HELPJ RecName: Full=Putative Holliday junction resolvase
 gi|4154855|gb|AAD05908.1| putative [Helicobacter pylori J99]
          Length = 134

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  ++I   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  ++V A + L  +    K+   +  +
Sbjct: 58  -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLEHLGKKNKRIATKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|260436612|ref|ZP_05790582.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
 gi|260414486|gb|EEX07782.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
          Length = 158

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 2/114 (1%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I S+D+G +RIGLA  D       P   L R +     + L +     ++   ++G PL
Sbjct: 7   SILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLRAHCRERSVQGLVVGFPL 66

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
           +  G    +    + +   +          + +E  +T +A +Q  +  + S +
Sbjct: 67  DDAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAAGEQFGLTGDRSGR 119


>gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1]
 gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase
 gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 136

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D+   RIG A+S    R A  R  + RK++      +   +        ++GLPL
Sbjct: 17  TVLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPL 74

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
             +G   P     RAF   ++D+       + DER TT  A+ +
Sbjct: 75  RTDGKPSPTADRVRAFGRVLMDKGYT--VEYQDERFTTQRARAL 116


>gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori
           Lithuania75]
          Length = 134

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R+   Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFI-KLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|208434282|ref|YP_002265948.1| Holliday junction resolvase-like protein [Helicobacter pylori G27]
 gi|226725527|sp|B5ZAA2|RUVX_HELPG RecName: Full=Putative Holliday junction resolvase
 gi|208432211|gb|ACI27082.1| Holliday junction resolvase-like protein [Helicobacter pylori G27]
          Length = 134

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  +++ A + L  +    K+   +  +
Sbjct: 58  -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSIEAYENLEHLGRKNKRLATKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|108562763|ref|YP_627079.1| Holliday junction resolvase-like protein [Helicobacter pylori
           HPAG1]
 gi|124107441|sp|Q1CUG7|RUVX_HELPH RecName: Full=Putative Holliday junction resolvase
 gi|107836536|gb|ABF84405.1| hypothetical protein HPAG1_0338 [Helicobacter pylori HPAG1]
          Length = 134

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R+   Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
            N S          F+  ++D       VF +E  +++ A + L  +    K    +  +
Sbjct: 58  -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSIEAYENLEHLGKKNKWLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 79

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 50  KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
           K       E+   I        ++GLP+ + G EG +   TR FV  + +    +  VF 
Sbjct: 2   KNSPSVFEEIKKVINEYKPKKIVVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFE 61

Query: 110 DERLTTVSAQQI 121
           DER T+  A++ 
Sbjct: 62  DERFTSQMAEKD 73


>gi|34558179|ref|NP_907994.1| Holliday junction resolvase-like protein [Wolinella succinogenes
           DSM 1740]
 gi|34483898|emb|CAE10894.1| conserved hypothetical protein-Predicted endonuclease [Wolinella
           succinogenes]
          Length = 127

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+G KR+G+A        A P   ++RK   Q A +L   +  +     + G+P  
Sbjct: 2   IIAVDIGLKRLGVA--QYAAGVALPLDPILRKNRHQAARDLDLLLKEKGAQKLVAGIPKE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            + SE       R F+  +   +      F DE  ++  A ++L   +  R+     +DS
Sbjct: 60  GSSSE-EMERRIRHFIGLL---EFRGEVCFVDESYSSKEAFELLRGRSRDRRDGK--LDS 113

Query: 139 IAAALILQEVL 149
           ++A +IL+  L
Sbjct: 114 LSALVILERYL 124


>gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
 gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
          Length = 214

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 23/139 (16%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G  R GLAI +   + A     + +KKV      +        I  F++GLPL+
Sbjct: 2   IVAVDYGDARCGLAIGE---KLARKIMTVEKKKVISEISRIP------FINCFVVGLPLS 52

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +      F   + +R+        DERLT+            S  K  + +D 
Sbjct: 53  MSGRYSQQTFKAIEFAEKL-NRRFKKRVYLIDERLTS------------SIFKNRENIDG 99

Query: 139 IAAALILQEV-LDRISFLE 156
           + AA I ++    ++ F E
Sbjct: 100 LCAAEIFEKFVFSKMKFHE 118


>gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori
           26695]
 gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase
 gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 134

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A          P   ++R    Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQ 134
                      T A + + I         VF +E  +++ A + L  +    K+   +  
Sbjct: 58  -----HESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDG 112

Query: 135 KVDSIAAALILQEV 148
           ++DS++A  IL+  
Sbjct: 113 RLDSLSACRILERY 126


>gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
           4359]
 gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
           4359]
          Length = 207

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 24/133 (18%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G ++ G+A              L +  V     EL  F+   N    + G+PL+
Sbjct: 2   IVAIDYGERKCGVAFG----------KILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G    +   T     +   +         DERLTT  A        VS++      D+
Sbjct: 52  MSGRYSQQTFKTVEVALSFSKKY---ETYLCDERLTTRIA------SKVSKRD-----DA 97

Query: 139 IAAALILQEVLDR 151
           ++AALI Q  ++ 
Sbjct: 98  VSAALIFQSFVEN 110


>gi|109947527|ref|YP_664755.1| Holliday junction resolvase-like protein [Helicobacter acinonychis
           str. Sheeba]
 gi|109714748|emb|CAJ99756.1| putative Holliday junction resolvase [Helicobacter acinonychis str.
           Sheeba]
          Length = 134

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R+   Q + +L   +  +NI   ++G P  
Sbjct: 2   ILACDVGLKRIGIAM--LLNGIILPLEAILRQNRNQASRDLSDLLKEKNIQVLVVGKP-- 57

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
              SE     + R   H +         VF +E  +++ A + L  +    K    +  +
Sbjct: 58  ---SENYADTNIR-IGHFIKLVDFKGEIVFINEDSSSIEAYENLEYLGRKNKWLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|150020203|ref|YP_001305557.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429]
 gi|149792724|gb|ABR30172.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429]
          Length = 202

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 19/137 (13%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G K+ G AI +            + K  T    EL + +        ++GLPL+
Sbjct: 2   ILALDYGEKKTGYAIGNE----------FIAKSGTIKTSELKNLLFQFK--KIVLGLPLS 49

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD- 137
           M+G+   + +    F   +  +K+ +     DERLTT  A+    + + +   R   +D 
Sbjct: 50  MSGNYSTQSYKVLKFAFKL--KKMGLNVFLIDERLTTKMAEVFQANDDDAFSARQIFIDY 107

Query: 138 ----SIAAALILQEVLD 150
               SIA    L++ L+
Sbjct: 108 IENPSIAQEFYLEDYLE 124


>gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str.
           Illinois]
 gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 159

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    ++  + ++     I SID G + IG+A+SDP  R+               A  ++
Sbjct: 1   MITFDLQKFLGAIGTGG-IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIM 59

Query: 61  SFITTENIAAFIIGLP---LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
             ++  +    I+G P   +  NG     +HS   F   + +     P +  DE  +T  
Sbjct: 60  KVVSDFS--GIIVGTPFSHIRNNG----WLHSIDKFAQKLSE-ITKKPILMCDESSSTSD 112

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
              +L   ++SR ++ +  D IAA  IL++ L
Sbjct: 113 VMVLL--GSLSRSRQKKWKDKIAACCILEKTL 142


>gi|308184138|ref|YP_003928271.1| Holliday junction resolvase-like protein [Helicobacter pylori
           SJM180]
 gi|308060058|gb|ADO01954.1| Holliday junction resolvase-like protein [Helicobacter pylori
           SJM180]
          Length = 134

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I + D+G KRIG+A+         P   ++R    Q + +L   +  ++I   ++G P  
Sbjct: 2   ILACDVGLKRIGIAM--LLNGVVLPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPSE 59

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
                  R+      V            VF +E  +++ A + L  +    K+   +  +
Sbjct: 60  NYADTNIRIEHFIKLVD------FKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113

Query: 136 VDSIAAALILQEV 148
           +DS++A  IL+  
Sbjct: 114 LDSLSACRILERY 126


>gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
           Langford 1]
          Length = 143

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITT--ENIAAFII 73
            + S+D+GTK++G+A+S   +    P   +            +L + +    E I   +I
Sbjct: 2   RVLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKTELRNFWEEIGVAVI 61

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G       SEG  V S    V  M+         F  E +++  +   L  +N S  K  
Sbjct: 62  GKA-----SEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSSNKAR 116

Query: 134 QKVDSIAAALILQEVLDRIS 153
           +K+DS +A +IL++  D I+
Sbjct: 117 EKLDSYSALIILKDYFDSIN 136


>gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri CARI]
 gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia
           muelleri CARI]
          Length = 138

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              I  ID G KRIGL+I++  R  A     +    +  T    L +   E+I   +IGL
Sbjct: 1   MSKILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLISTLEMYLKY---EDIDTIVIGL 57

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133
           P+       P     + F+  +  +   +     DER T+  A   L++      ++K  
Sbjct: 58  PIKYYNYLFPIEKKIKKFIKIIKYKYPNLIIKRLDERFTSKIANYYLLNSVFKKKKRKNK 117

Query: 134 QKVDSIAAALILQEVL 149
             +D I+A L+LQ+ +
Sbjct: 118 SLLDKISATLLLQDYI 133


>gi|94984533|ref|YP_603897.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM
           11300]
 gi|94554814|gb|ABF44728.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM
           11300]
          Length = 232

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D+   RIG A+S    + A  R  + RK++      +   +        ++GLPL 
Sbjct: 105 ILALDVSKSRIGFAVS--AGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPLR 162

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+  P     RAF   + D+       + DER TT  A + L   +          D 
Sbjct: 163 TDGAHSPSADRVRAFGKILADKGYR--VAYQDERFTTQRA-RALGTRDE---------DE 210

Query: 139 IAAALILQEVL 149
            AA  IL+  L
Sbjct: 211 AAAVQILELYL 221


>gi|289772787|ref|ZP_06532165.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289702986|gb|EFD70415.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 172

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
                ++D+G  RIG+A  DP    A P   +  + V      L   +        ++G
Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74

Query: 75 LP 76
          LP
Sbjct: 75 LP 76


>gi|213863107|ref|ZP_03386362.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 55

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 99  DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
             +  V     DERL+TV A+  L +    R     KVDS +A +IL+   ++
Sbjct: 1   HGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQ 53


>gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53]
          Length = 125

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 30  GLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLNMNGSEGPRVH 88
           G AISD    F+            +  ++ +   +    I  FIIG PLN  G +     
Sbjct: 2   GFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTCL 61

Query: 89  STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
               F+ ++ ++         +E  ++  A +IL   N+  KK+  K D +AA +ILQ+ 
Sbjct: 62  LIDEFIIHL-EKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDMLAAKIILQDY 120

Query: 149 LD 150
           LD
Sbjct: 121 LD 122


>gi|169835835|ref|ZP_02869023.1| DNA integration/recombination/invertion protein [candidate
          division TM7 single-cell isolate TM7a]
          Length = 71

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +    +D+G  RIG+A  DP    A     + R K+      +   +  E     ++G+
Sbjct: 1  MRKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTKIDP-IARIKEILDDEGTKKIVVGM 59

Query: 76 PLNMNGS 82
          P +++GS
Sbjct: 60 PKSLDGS 66


>gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
           CCMP1335]
          Length = 423

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 47  LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK----- 101
           +++   T     ++++  +E +   ++GLPL+ NGS   +   TR F + ++        
Sbjct: 226 IIQYNNTLLCNTIINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMG 285

Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-------QKVDSIAAALILQEV 148
                  WDER T+  A   ++   ++R +RI         +D  AA +IL+  
Sbjct: 286 YNANVTLWDERYTSKEAASRIVGEAIARNRRIPSASDLNGALDDEAACIILEHY 339


>gi|297181477|gb|ADI17664.1| predicted endonuclease involved in recombination (possible holliday
           junction resolvase in mycoplasmas and B. subtilis)
           [uncultured gamma proteobacterium HF0130_23I23]
          Length = 128

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + S+D GTK+IG+ I++     + P P L  K        L   I        IIG P  
Sbjct: 8   VLSLDFGTKKIGVCIAETYTGQSSPLPVL--KNDEHLFDNLDKIINEWLPNLCIIGKPKE 65

Query: 79  MNGSEGPRVHST-RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           M            R F     +R   +     +E  T+ +         VS++ + Q+ D
Sbjct: 66  MK----ENFEEAHRNFFKTFKER-YEISISEVNEDFTSQA---------VSKEHKKQEYD 111

Query: 138 SIAAALILQEVLDRIS 153
           S +AALI +E  ++ +
Sbjct: 112 SYSAALIFEEWFNQNN 127


>gi|255660339|ref|ZP_05405748.1| hypothetical protein MgenG_02399 [Mycoplasma genitalium G37]
          Length = 128

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 27  KRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITT-ENIAAFIIGLPLNMNGSE 83
           K+IG AI++   ++         K   +TA+    L        +   +IG P     S+
Sbjct: 2   KKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGFPKFHYYSD 61

Query: 84  GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
              +         +++++  +P +  DE  TT + +  LI M++  K   +  D++AA L
Sbjct: 62  ---IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKAKDTLAAVL 118

Query: 144 ILQEVL 149
           IL+   
Sbjct: 119 ILERFF 124


>gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
 gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
          Length = 230

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
            ID GT   G+AI         P+  +  +K     LE L  +   +    + GLP++M+
Sbjct: 11  GIDYGTSNCGIAILKQDVNIPLPKETIKSEK----LLEFLVSLDLSHDDLIVFGLPISMS 66

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
           G    +   +       I  K+     F DERLTT S    +    VS KK  +  D  +
Sbjct: 67  GRYSKQSFLSIDEAIK-IKEKIGCKIYFVDERLTTSSLYSEVR-GQVSYKKVKRTKDQNS 124

Query: 141 AALILQEVL 149
           + LIL   +
Sbjct: 125 SVLILSNFI 133


>gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 67

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 88  HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
               +FV +++ ++  +   + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ 
Sbjct: 1   MKVISFV-DLLKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQT 59

Query: 148 VLDRIS 153
            LD  S
Sbjct: 60  YLDGRS 65


>gi|330872144|gb|EGH06293.1| Holliday junction resolvase-like protein [Pseudomonas syringae
          pv. glycinea str. race 4]
          Length = 66

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
          +  ID GTK+IG+A+       A     L  +       ++ + I      A ++GLPLN
Sbjct: 7  LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66


>gi|224032587|gb|ACN35369.1| unknown [Zea mays]
          Length = 146

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 50  KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFV 107
             +   A +  + ++  +IA F++G P  + G          +    +    +   +P+ 
Sbjct: 30  TNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQV-SLAGELCKTGKLDDLPYA 88

Query: 108 FWDERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153
           +WDE  T+   + +L  +N+          D  AA  ILQ  LD ++
Sbjct: 89  YWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135


>gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday
           junction resolvase in mycoplasmas and B. subtilis)
           [uncultured gamma proteobacterium HF0010_11B23]
          Length = 128

 Score = 72.7 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           K  + + S+D GTK IG+ I++       P P +  +       EL + +        +I
Sbjct: 3   KEAKVVLSLDYGTKNIGICIAETYTGQTKPLPVI--ENNDSFYTELDNLLKEWRPNIVLI 60

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G+P  M+      ++  +A++ N       +  +  +E  TT           + + K+ 
Sbjct: 61  GIPPKMSSDFNDGLNEAKAYIINEHK----IKVIEVNEDFTT---------QGLDKCKKN 107

Query: 134 QKVDSIAAALILQEVLDRI 152
              DS +A LI Q+  + I
Sbjct: 108 HMKDSYSAELIFQDWFNDI 126


>gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 159

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 13/152 (8%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           M    ++  + +++    + SID G + +G+A+SDP  R+               A  ++
Sbjct: 1   MITFDLQKFLGAIEAG-RVISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIM 59

Query: 61  SFITTENIAAFIIGLP---LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
             ++  +    I+G P   +  NG     +     F   + +     P +  DE  +T  
Sbjct: 60  KVVSDFS--GIIVGTPFSHIRNNG----WLDFIDKFAQKLSE-VTRKPILMCDESSSTSD 112

Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
              +L   ++SR ++ +  D IAA  IL++ L
Sbjct: 113 VMILL--SSLSRSRQKEWKDKIAACCILEKTL 142


>gi|307297757|ref|ZP_07577563.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917017|gb|EFN47399.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 132

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             ID GT RIGLA+         P   +      +    LL  I  + I   +IGLP++M
Sbjct: 4   LGIDFGTSRIGLALQVENIEI--PLFAIDHTGYKKN---LLRIIEEKGIEEIVIGLPISM 58

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
           +G          +F    +           DE LTT +A+++  +      K        
Sbjct: 59  SGRFSESTLKAVSFAEK-VKSIFPGRVFLVDETLTTETARRLSSEAGQDFSKARDV---F 114

Query: 140 AAALILQEV 148
           +A  IL+  
Sbjct: 115 SAIQILRNY 123


>gi|145354506|ref|XP_001421524.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581761|gb|ABO99817.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 202

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 34/171 (19%)

Query: 7   EDLVKSLKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLS 61
           ++L  + +    +    +D G +R+GLA+S+ G     P   L        T T   +L 
Sbjct: 25  DELRAARRARGDVIALGVDYGARRVGLAVSN-GGAAPRPLRTLTHSGTATTTSTVRAILD 83

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTR--------------AFVHNMID-------- 99
               E     ++G+P+      G      R               F   + D        
Sbjct: 84  VALEECCDRIVVGIPVP----PGRAAKDRRGRGRGAVQMHAVCARFAGEVADACARSTNA 139

Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
               +    +DE  T+  A + +     S +     +DS +AA++L+   D
Sbjct: 140 ETKALVVYTYDESRTSKEASERIATSGGSNEN--GALDSASAAILLERYFD 188


>gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division
           TM7 single-cell isolate TM7a]
          Length = 75

 Score = 70.7 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 97  MIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
           +      +   F DER TT  A+  L +    + K+R + VD +AA++ILQ+ LD +
Sbjct: 18  LKKNIPNIQIFFVDERYTTTEAEHYLKNYSKKNGKERRKVVDMVAASIILQKYLDTL 74


>gi|308812223|ref|XP_003083419.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
 gi|116055299|emb|CAL57695.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
          Length = 224

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 27/152 (17%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGLP 76
             +D G +RIGLA+SD       P   +  +       +A E+      E     ++G+P
Sbjct: 66  LGVDYGARRIGLAVSD-SGMAPRPLRTMEHRGSATTGASAREVAETAARECCDRIVVGVP 124

Query: 77  LNM----NGSEGPRVHSTR------AFVHNMIDRKV--------YVPFVFWDERLTTVSA 118
                      G    + R       F   + D            V     DE  T+V A
Sbjct: 125 KQPGRGMKDRRGRGRGAVRMDLICARFAGEVADALARSEDANARAVTVYTLDESRTSVEA 184

Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
            + +     +       VD+ +AA++L+   D
Sbjct: 185 AERMEASGST-----NSVDAASAAILLERYFD 211


>gi|302847257|ref|XP_002955163.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
           nagariensis]
 gi|300259455|gb|EFJ43682.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
           nagariensis]
          Length = 215

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGL 75
           +  +D GT   GLA+   G     P   +      K++  A ++L+    + +   ++G+
Sbjct: 40  VLGVDYGTSITGLALGRNGWC--SPLKSIPSLRTSKLSDVARQVLATALEQRVEGMVVGI 97

Query: 76  PLNMNG------SEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQIL---ID 124
           P+   G      ++       R   H +    ++  +P   ++E+ TT +  + L     
Sbjct: 98  PVQPGGSIVKPHTDSRLGSRCRNLAHTLALMAKEHGIPVYLYNEKDTTRATMKTLGYNWT 157

Query: 125 MNVSRKKRIQ-KVDSIAAALILQEVL 149
             +S +++   K+DS +AA++L+   
Sbjct: 158 DRLSGQEKQACKLDSESAAMLLRLYF 183


>gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
 gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
          Length = 202

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 24/126 (19%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I +ID G  + G AI +            + K       +++  I+  N    ++G+PL+
Sbjct: 2   IIAIDYGNSKCGYAIGN----------NFISKSGAVKTKDIMKLIS--NAKKIVMGIPLS 49

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
           M+G+   +      F +N++++         DERLTT  A    I  +          D+
Sbjct: 50  MSGNYSTQSLKVLTFANNLVEKGYD--VFLIDERLTTKMASSFGIKDD----------DA 97

Query: 139 IAAALI 144
            +A  I
Sbjct: 98  FSARQI 103


>gi|213617507|ref|ZP_03372333.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 47

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 FWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
             DERL+TV A+  L +    R     KVDS +A +IL+   ++
Sbjct: 2   LHDERLSTVEARSGLFERGGYRALNKGKVDSASAVIILESYFEQ 45


>gi|154249032|ref|YP_001409857.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1]
 gi|154152968|gb|ABS60200.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1]
          Length = 226

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 27/136 (19%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I +ID G  + G AI +    F      +   ++          I         +G+PL
Sbjct: 2   SIIAIDYGKSKCGYAIGN---VFVSESGTIKTSEIHTKISSFKKII---------LGIPL 49

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           +M+G+   +      F   ++ +      +F DERLTT  A          +  + +  D
Sbjct: 50  SMSGNYSTQTFEVIKFGIKLLKQ--GKEVLFIDERLTTQMA----------KTYQKKDDD 97

Query: 138 SIAAALILQEVLDRIS 153
             +A  +L   LD I+
Sbjct: 98  RFSAEQLL---LDYIN 110


>gi|255626817|gb|ACU13753.1| unknown [Glycine max]
          Length = 110

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 56  ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERL 113
           A +L S I   ++  F+IG+P + +          + F+ N+   K+   V + +W+E  
Sbjct: 2   ASDLESLIAKYSLKGFVIGIPFDKH-QVSSDAMQVKVFIDNLCRTKMLEGVKYAYWNESF 60

Query: 114 TTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
           T+ + + +L  +N++        +D  AA  ILQ  LD ++
Sbjct: 61  TSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101


>gi|289758683|ref|ZP_06518061.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714247|gb|EFD78259.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
          Length = 107

 Score = 65.4 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%)

Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
                  ID+G  RIG+A SDP    A P   + R +  +    L +          I+
Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78

Query: 74 GLPLNM 79
          GLP  +
Sbjct: 79 GLPRTL 84


>gi|320335781|ref|YP_004172492.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211]
 gi|319757070|gb|ADV68827.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211]
          Length = 131

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+   RIG A+       A  R    R  ++     +      E     ++GLPL 
Sbjct: 6   VLALDVSKTRIGYAV--NVGDLAFGRGSRDRTTLSADLKAVAKKAHHEGATLLLLGLPLR 63

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            +G+        R+F   +  R       + DER TT  A + L   ++         D 
Sbjct: 64  TDGAPSAVADRVRSFGSAL--RAAGHTVQYQDERFTTQRA-RDLGAADL---------DE 111

Query: 139 IAAALILQEVL 149
            AA  IL+  L
Sbjct: 112 AAAVQILELYL 122


>gi|291533811|emb|CBL06924.1| Predicted endonuclease involved in recombination (possible
          Holliday junction resolvase in Mycoplasmas and B.
          subtilis) [Megamonas hypermegale ART12/1]
          Length = 62

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
           I S+D+G + +G+A+SD     A     + RK        +        
Sbjct: 2  RIMSLDIGDRTVGIAVSDELLFTAQGVETIRRKSYKHDLARIRELSKQYE 51


>gi|226355270|ref|YP_002785010.1| Holliday junction resolvase [Deinococcus deserti VCD115]
 gi|226317260|gb|ACO45256.1| putative Holliday junction resolvase [Deinococcus deserti VCD115]
          Length = 139

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+   RIG A+     + A  R  + RK++      +   +        ++GLPL 
Sbjct: 14  VLALDVSKSRIGFAV--NLGQLAFGRGSVDRKRLPLDLKAVRLKVEETGATLLLLGLPLR 71

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
            +G+  P     RAF   + D+       + DER TT  A+++
Sbjct: 72  TDGAPSPTADRVRAFGRVLTDKGYR--VAYQDERFTTRRAREL 112


>gi|332295431|ref|YP_004437354.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178534|gb|AEE14223.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 134

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G+ +IG AI D        +  ++     +  L    FI    I   ++G    
Sbjct: 2   ILGIDAGSYKIGYAILDERYNI-FSKGIILLNDFKKDFLR---FIKEYEIEVVVVG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI--- 133
            +G+           +  +    + +  +   ER T+V A+   I+              
Sbjct: 54  -SGTGH---KKVMKLIDEL---NLDLKVIVISERNTSVEAKWRYINSLKGFKGFFCKLFG 106

Query: 134 ---QKVDSIAAALILQEVLDR 151
              + VD I+A +I +  L+ 
Sbjct: 107 YLDKPVDDISAVIIAERYLNE 127


>gi|213622573|ref|ZP_03375356.1| Holliday junction resolvase-like protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 40

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
           PLNM+G+E P     R F  N I  +  V     DERL+TV
Sbjct: 1   PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTV 40


>gi|227498580|ref|ZP_03928724.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904036|gb|EEH89954.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 133

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 25/144 (17%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + I  ID G  + G A+ +   +       L+ +    +  + L  +    +   ++G 
Sbjct: 1   MKKILGIDPGKDKTGAALCEESGKILR-CEVLLMEHFLASLQKFLDHV---PVTECVLG- 55

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
               NG+    +  T      ++     +     DE  +T  A+Q+   ++  +      
Sbjct: 56  ----NGTTSASMQKT------LLAAYPDLAIHIIDEAHSTEEARQLYWKLHPPKGLMKLI 105

Query: 134 --------QKVDSIAAALILQEVL 149
                     +D +AA +++Q  L
Sbjct: 106 PLGMRTPPGNMDGLAAVILVQRYL 129


>gi|126660442|ref|ZP_01731551.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110]
 gi|126618255|gb|EAZ89015.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110]
          Length = 139

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 26/146 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           +   D G  + G+AI+D      +    +   + +Q    L   I   +I   ++G    
Sbjct: 9   LLGFDPGRDKCGVAIADKLGNI-YYHEVI---ESSQAISTLNHLIEQFSIKFLVMG---- 60

Query: 79  MNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDM----NVSRKKRI 133
            N +        + +   + +   V VP  F DER +T+ A+    +M     + R    
Sbjct: 61  -NQTTS------KQWKKQLENELLVSVPIFFIDERNSTLEARDRYWEMYPPQGLMRLVPK 113

Query: 134 QK------VDSIAAALILQEVLDRIS 153
                   +D I A L+++   + I 
Sbjct: 114 GMRNPPRPIDDIVAILLIERYFNSIK 139


>gi|165924192|ref|ZP_02220024.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
          334]
 gi|165916368|gb|EDR34972.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
          334]
          Length = 60

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
          PNQ +     D G KRIG+A+       A+    L  +       ++   I T +    
Sbjct: 2  PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVL 60


>gi|325846601|ref|ZP_08169516.1| Holliday junction resolvase-like domain protein [Anaerococcus
          hydrogenalis ACS-025-V-Sch4]
 gi|325481359|gb|EGC84400.1| Holliday junction resolvase-like domain protein [Anaerococcus
          hydrogenalis ACS-025-V-Sch4]
          Length = 38

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV 52
             I  +DLG K IG+A+SDP    A     + RKK+
Sbjct: 1  MSRIMGLDLGDKTIGVALSDPFFITAQAYLTIKRKKL 37


>gi|172035379|ref|YP_001801880.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142]
 gi|171696833|gb|ACB49814.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142]
          Length = 139

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 14  KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           K +  +   D G  + G+AI+D   +  +    +   + +Q    L + I   +I   ++
Sbjct: 4   KSSSMVLGFDPGRDKCGVAIADNKGKI-YYHEVV---ESSQGISTLNNLIEQFSINFLVM 59

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----NVSR 129
           G     N +   +            +  V VP V  DER +T+ A+    +M     + R
Sbjct: 60  G-----NQTTSKQWKKQLE-----SELLVSVPIVLIDERNSTLEARDRYWEMYPPQGLMR 109

Query: 130 KKRIQK------VDSIAAALILQEVLDRIS 153
                       +D I A L+++   + I 
Sbjct: 110 LLPKGMRNPPRPIDDIVAILLIERYFNSIK 139


>gi|145516242|ref|XP_001444015.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411415|emb|CAK76618.1| unnamed protein product [Paramecium tetraurelia]
          Length = 139

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 19  IASIDLGTKRIGLAIS-DPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
           +  IDLGT   G ++S +  +   +   +        + L   ++  I  E I   +IG 
Sbjct: 12  LMGIDLGTAFTGFSVSYNLQQVLVYDLHYSPCYSPHDSTLYKRIIQIINKEKIGGILIGK 71

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           P      +G     T+    N++   +        E  TT  A++I      S+      
Sbjct: 72  PSF---EKGYIEEFTKGLESNLVAEGLKTFITQVGEDYTTKQAKKI------SKTNNKFL 122

Query: 136 VDSIAAALILQEVLDRI 152
            D +AA LILQ  L+ +
Sbjct: 123 HDGMAAMLILQSFLNEL 139


>gi|332712311|ref|ZP_08432239.1| putative endonuclease involved in recombination [Lyngbya majuscula
           3L]
 gi|332349117|gb|EGJ28729.1| putative endonuclease involved in recombination [Lyngbya majuscula
           3L]
          Length = 133

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 30/144 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + G+A+ +   +       +          +         I   ++G    
Sbjct: 2   ILGFDPGRDKCGVAVMEKDGQLLT-HEVVA---SGNAIAKFQQLCQQFPIETIVMG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ------------QILIDM 125
                  +  + + +   + +     VP V  DER +++ A+            Q LI  
Sbjct: 54  ------DQT-TAKRWKQKIKEELPASVPIVLVDERYSSLEARPRYWQMYPPKGFQRLIPQ 106

Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
            + +  R   +D I A L+++  +
Sbjct: 107 GMRQPPR--PIDDIVAILLIERYI 128


>gi|67925371|ref|ZP_00518722.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH
           8501]
 gi|67852786|gb|EAM48194.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH
           8501]
          Length = 140

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 30/150 (20%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             I   D G  + G+AI+D      +    +   + +Q  L + + I   ++   ++G  
Sbjct: 7   SKILGFDPGRDKCGIAITDKKGNI-YYHQVI---ESSQAILTINTLIKQFSVNLLVLG-- 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQ------------ILI 123
              N +        + +   + +  +  +P    DER +T+ A+              L+
Sbjct: 61  ---NQTTS------KQWRKRLDNELLMSIPIELIDERNSTLEARDRYWKMYPPQGLMRLL 111

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
              +    R   +D I A L+++     I+
Sbjct: 112 PQGMRNPPR--PIDDIVAILLIERYFKSIN 139


>gi|159027740|emb|CAO89610.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 130

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + G+A+     +       +     +Q    L S      I   ++G    
Sbjct: 3   ILGFDPGKDKCGIAVRSSTGKIYT-HEVIA---SSQAIEHLASLCQQYPIELLVMG---- 54

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126
            N +               I  +V +P    DER +T+ A+            Q LI   
Sbjct: 55  -NQTTSKSW-------REKIAARVTIPITLVDERNSTLEARDRYWQMFPPKGLQKLIPQG 106

Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
           +    R   +D I A L+++  L
Sbjct: 107 MRLPDR--PIDDIVAILLIERHL 127


>gi|282899412|ref|ZP_06307379.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195676|gb|EFA70606.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 158

 Score = 52.6 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 26/151 (17%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +K    I   D G  + G+A+     +  H    +  K   Q    +  F TT +I+  +
Sbjct: 8   IKTQSTILGFDPGRDKCGVAVMGIDLKLYH-HEVVPAK---QVITRISDFRTTFSISRIV 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSR-- 129
           +G              + + +   +       +  +  DER TT++A+     M   R  
Sbjct: 64  MG-----------NQTTAKTWQQQLEQELNPSLDIILVDERYTTLAARDRYWQMFPPRGL 112

Query: 130 --------KKRIQKVDSIAAALILQEVLDRI 152
                   ++  + +D I A L+++  L+ +
Sbjct: 113 TSLVPKGLRQPPRVIDDIVAILLIERYLEEL 143


>gi|258645767|ref|ZP_05733236.1| conserved hypothetical protein [Dialister invisus DSM 15470]
 gi|260403138|gb|EEW96685.1| conserved hypothetical protein [Dialister invisus DSM 15470]
          Length = 144

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G+ + G+A+       A  +  +  +   +   E+   +   +I   ++G    
Sbjct: 2   ILALDPGSVKTGVAVVHKDGSLAW-KKVIQTEDFEK---EVQGVLDAYDIGVIVMG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
            NG+    +   +  V  + +R+  V     DE+ TT   +
Sbjct: 54  -NGTHHKEMQ--QRTVMLLKEREKNVKIELVDEKYTTEMGE 91


>gi|282897295|ref|ZP_06305297.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii
           D9]
 gi|281197947|gb|EFA72841.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii
           D9]
          Length = 150

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 26/150 (17%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           +K    I   D G  + G+A+    R+  H    +  K   Q    +  F TT +I+  +
Sbjct: 8   IKTQSTILGFDPGRDKCGVAVMGIDRKLYH-HEVVPAK---QVITRISDFRTTFSISTIV 63

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSR-- 129
           +G              + + +   +       +  +  DER TT++A+     M   R  
Sbjct: 64  MG-----------NQTTAKTWKQQLEQELNPSLDIILVDERYTTLAARDRYWQMFPPRGL 112

Query: 130 --------KKRIQKVDSIAAALILQEVLDR 151
                   ++  + +D I A L+++  L+ 
Sbjct: 113 TNLVPKGLRQPPRVIDDIVAILLIERYLEE 142


>gi|166363434|ref|YP_001655707.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843]
 gi|166085807|dbj|BAG00515.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843]
          Length = 130

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + G+A+     +       +     +Q    L S      +   ++G    
Sbjct: 3   ILGFDPGKDKCGIAVRSSTGKIYT-HEVIA---SSQAIERLASLCQQYPLELLVMG---- 54

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126
            N +         A        ++ +P    DER +T+ A+            Q LI   
Sbjct: 55  -NQTTSKSWRQKIA-------ARITIPITLVDERNSTLEARDRYWQMFPPKGLQKLIPQG 106

Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
           +    R   +D I A L+++  L
Sbjct: 107 MRLPDR--PIDDIVAILLIERHL 127


>gi|17231886|ref|NP_488434.1| hypothetical protein alr4394 [Nostoc sp. PCC 7120]
 gi|17133530|dbj|BAB76093.1| alr4394 [Nostoc sp. PCC 7120]
          Length = 148

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 27/155 (17%)

Query: 10  VKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
           + +  P QP I   D G  + GLA+    R+      +  +   +  A+ +++ +  +  
Sbjct: 3   LSAFSPTQPVILGFDPGKDKCGLAVMGLDRQL-----YYHQVVASADAIAIINTLRQQFP 57

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNV 127
            + ++     M           + +   +       +  V  DER +T+ A+     M  
Sbjct: 58  ISMLV-----MGNQTT-----AKRWKQQLQQELAEALNIVLVDERYSTLEARDRYWQMYP 107

Query: 128 SRKKRI----------QKVDSIAAALILQEVLDRI 152
            +              + +D I A L+++  L+R+
Sbjct: 108 PKGLTKLLPHGMRQPPRPIDDIVAILLIERYLNRL 142


>gi|119513399|ref|ZP_01632431.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414]
 gi|119461949|gb|EAW42954.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414]
          Length = 147

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 35/163 (21%)

Query: 4   LLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           +   +      P QP I   D G  + GLA+    R+  +    +  +K   T   L   
Sbjct: 1   MTFSEF----SPTQPVILGFDPGKDKCGLAVMGLDRQL-YYHQVVTAQKAIATIETLRQ- 54

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQI 121
                ++  ++G     N +        + +   + +  V  +  +  DER +T+ A+  
Sbjct: 55  --QFPVSLLVMG-----NQTTS------KQWKQQLREALVEQLSIILVDERYSTLEARDR 101

Query: 122 ------------LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
                       L+   + +  R   +D I A L+++  L+R+
Sbjct: 102 YWQMYPPKGLTKLLPQGMRQPPR--PIDDIVALLLIERYLNRL 142


>gi|255082690|ref|XP_002504331.1| predicted protein [Micromonas sp. RCC299]
 gi|226519599|gb|ACO65589.1| predicted protein [Micromonas sp. RCC299]
          Length = 405

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 6   IEDLVKSLKPNQPI---ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           ++D  KSL+  + +     +D GT+R G+A+S  G     P   +      +    ++  
Sbjct: 82  LDDEFKSLRAARGVVTALGVDYGTRRAGIAVS-VGGASPRPVAVVPATPPGELIDAVVRA 140

Query: 63  ITTENIAAFIIGLPL 77
              E     ++GLP 
Sbjct: 141 AVRERADVIVVGLPK 155



 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 26/103 (25%)

Query: 71  FIIGLPLN----MNGSEGPRVHS-------TRAFVHNMIDR-------KVYVPFVFWDER 112
             +G P N     +GS   R  +        R F  N+ D              V  DE 
Sbjct: 286 VAVGSPPNRRTEDDGSTNRRGRAPVKMHVLARRFAENLADAVRDAGLGAKGTRVVMVDES 345

Query: 113 LTTVSAQQILIDM------NVSRKKRIQKVDSIAAALILQEVL 149
            T+  A+  LI         +  + R   +D IAA ++L    
Sbjct: 346 ATS--AEADLIASTARGGRGLKDRPRGAHLDDIAAGVLLDRYF 386


>gi|220909831|ref|YP_002485142.1| Resolvase RNase H domain-containing protein fold protein
           [Cyanothece sp. PCC 7425]
 gi|219866442|gb|ACL46781.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
           7425]
          Length = 137

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 30/149 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G ++ G+A+    R   H    +           + S   T  I+  ++G    
Sbjct: 2   ILGFDPGRQKCGIAVMGLDRSI-HYHQVV---SSEAAIATIESLRQTYPISLLVMG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQ------------ILIDM 125
                  +  + + +   +       +  +  DER +T++A+              LI  
Sbjct: 54  ------DQT-TAKQWKQKLSQSLPQPLTIISVDERYSTLTARDRYWQMYPPRGLYRLIPK 106

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
            +    R   VD I A ++++  L+R+++
Sbjct: 107 GMRGTPR--PVDDIVAIVLIERYLERLTY 133


>gi|218246877|ref|YP_002372248.1| Resolvase RNase H domain-containing protein fold protein
           [Cyanothece sp. PCC 8801]
 gi|257059919|ref|YP_003137807.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802]
 gi|218167355|gb|ACK66092.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
           8801]
 gi|256590085|gb|ACV00972.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802]
          Length = 140

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 26/151 (17%)

Query: 12  SLKPNQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           ++KP + I   D G  + GLA+ D   +   H                L S      I  
Sbjct: 2   NIKPPEIILGFDPGRDKCGLAVRDQKDQILYHEV-----VSSEAAIATLKSVSQQYPIDL 56

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----N 126
            ++G     N +   +            +     P V  DER +++ A+     M     
Sbjct: 57  LVMG-----NQTTSKQWKKQLE-----SELSPTFPIVMVDERNSSLEARDRYWQMYPPQG 106

Query: 127 VSRKKRIQK------VDSIAAALILQEVLDR 151
           ++R            +D I A L+++  L+ 
Sbjct: 107 LTRLIPQGMRLPPCPIDDIVAILLIERYLNN 137


>gi|119484735|ref|ZP_01619217.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106]
 gi|119457553|gb|EAW38677.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106]
          Length = 136

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 30/146 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + G+A+ +   +       +     T+    L S      I   ++G    
Sbjct: 5   ILGFDPGKDKCGIAVMENNNQL-QYHQVIP---STEAIKTLQSLCQQFPIHLCVMG---- 56

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ------------ILIDM 125
            N +        +++   + +     +  +  DER +++ A+              LI  
Sbjct: 57  -NQTTS------KSWKQKLSEALPNTLQIILVDERYSSLEARDRYWQMYPPQGLTRLIPQ 109

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
            +    R   +D + A ++++  L +
Sbjct: 110 GMRTPPR--PIDDLVAIILIERYLSQ 133


>gi|224032053|gb|ACN35102.1| unknown [Zea mays]
          Length = 167

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 1  MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPR 44
          M +L  E+L + +           +  +D+G+K +G+AISD   R A P 
Sbjct: 1  MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPL 50


>gi|238927584|ref|ZP_04659344.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884509|gb|EEQ48147.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531]
          Length = 132

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 28/144 (19%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
           +  I +ID G ++ G+A+       A     L     T    ++   +        I+G 
Sbjct: 2   SGNILAIDPGREKCGVAV-----LAADGTVLLQEVIPTARLADVTGALLERYAPTVIMG- 55

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
               NG+      +    V  +            DE  TT +A+      +  R  R   
Sbjct: 56  ----NGTTSAAAKAC---VEELGH-----EVNLVDEYRTTDAAKCAYWAAHPPRGWRRFV 103

Query: 136 ----------VDSIAAALILQEVL 149
                     VD   A ++ Q  L
Sbjct: 104 PRGMLVPPVPVDDFVAVILAQRYL 127


>gi|218437377|ref|YP_002375706.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
           7424]
 gi|218170105|gb|ACK68838.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
           7424]
          Length = 132

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 34/150 (22%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL---SFITTENIAAFIIGL 75
           I   D G  + G+A+    R+       +   +V ++   +    + +    I   ++G 
Sbjct: 2   ILGFDPGRDKCGVAVMGNDRQ-------IYDHQVVESDRAIAVVNALLKEYPIEILVMG- 53

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI------------LI 123
                         +       I+    +P V  DER +++ A+              LI
Sbjct: 54  --------NQTTAKSWK-AKLEIELSQSIPIVLVDERNSSMEARDRYWEMYPPKGIKWLI 104

Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
              +    R   +D I A L+++  L ++S
Sbjct: 105 PQGMRLPPR--PIDDIVAILLIERYLGQLS 132


>gi|298490371|ref|YP_003720548.1| resolvase RNase H domain-containing protein fold protein ['Nostoc
           azollae' 0708]
 gi|298232289|gb|ADI63425.1| Resolvase RNase H domain protein fold protein ['Nostoc azollae'
           0708]
          Length = 145

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 26/146 (17%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            I   D G  + G+A+    R+      +  +      A+  +  +  +     I+    
Sbjct: 7   AILGFDPGRDKCGVAVMGVDRQL-----YDHQVVAGNDAIAHIEILRRKFPIFLIV---- 57

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM----NVSRKKR 132
                 G +  + + +   +       +  +  DER TT+ A++    M     +++   
Sbjct: 58  -----MGDQT-TAKKWKQQLNQELTDMLNIILIDERYTTLEARERYWQMFPPTGLTKLLP 111

Query: 133 IQK------VDSIAAALILQEVLDRI 152
                    +D I A L+++  L+R+
Sbjct: 112 KGMRQPPRPIDDIVAILLIERYLNRL 137


>gi|16331716|ref|NP_442444.1| hypothetical protein sll0832 [Synechocystis sp. PCC 6803]
 gi|1001270|dbj|BAA10514.1| sll0832 [Synechocystis sp. PCC 6803]
          Length = 151

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 34/146 (23%)

Query: 20  ASIDLGTKRIGLAI--SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
              D G  + G+A+   D    +      +  ++V Q    L +      +   ++G   
Sbjct: 19  LGFDPGRDKCGVAVMTGDRQILY---HETIAAQEVPQ---RLPALCEQYQVEQVVMG--- 69

Query: 78  NMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQ------------ILID 124
                      + + +   +       +     +E+ +TV A+Q             L+ 
Sbjct: 70  --------NQTTAKQWQKQLQSYLLPAMALALVNEKNSTVEARQRYWQMYPPQGLGRLVP 121

Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
           + +    R   VD I A L+++  LD
Sbjct: 122 LGLRTPPR--PVDDIVAILLIERYLD 145


>gi|303288922|ref|XP_003063749.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454817|gb|EEH52122.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 296

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G +R GLA+S        P   +      +    ++     E     I+GLP   
Sbjct: 80  LGVDYGRRRTGLAVS-STGASPIPLAVIPSVPPHELVRAVVDAARRERATEIIVGLPTQP 138

Query: 80  NGSE 83
             SE
Sbjct: 139 AASE 142


>gi|220932583|ref|YP_002509491.1| Resolvase RNase H domain protein fold protein [Halothermothrix
           orenii H 168]
 gi|219993893|gb|ACL70496.1| Resolvase RNase H domain protein fold protein [Halothermothrix
           orenii H 168]
          Length = 131

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + +ID G  + G+A+ D   +      +       +    L       ++   ++G    
Sbjct: 2   VLAIDPGRDKCGIAVVDRNLKI----FYRAIVSPGKLGSYLQKLSHRYSLEGIVLG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
            NG+    V          I+  V +P    DE  TT+ A++     + + 
Sbjct: 54  -NGTFSGEVKKI-------IEATVNIPVHEVDESYTTLEAEERYRQEHYTG 96


>gi|284049003|ref|YP_003399342.1| Resolvase RNase H domain protein fold protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953224|gb|ADB48027.1| Resolvase RNase H domain protein fold protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 138

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 31/143 (21%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFIIGLP 76
             +D G  + G A              LVR+ +  T      L +F+  E+ A  ++G  
Sbjct: 8   LGVDPGRDKTGAA-------LVAGDGTLVRQAILPTDHFTDHLRAFLAGESPAGCVLG-- 58

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133
              +G+    +H        + +    +P    DE  +T  A+++   +   R  +    
Sbjct: 59  ---DGTTSTTMH------RQLEETFPRLPLFTVDEYGSTQEAKKLYWQLFPPRGWKRFLP 109

Query: 134 -------QKVDSIAAALILQEVL 149
                    VD +AAA++++  L
Sbjct: 110 QALLDAPSAVDGLAAAVLVRRYL 132


>gi|148238653|ref|YP_001224040.1| polynucleotidyl transferase [Synechococcus sp. WH 7803]
 gi|147847192|emb|CAK22743.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily
           [Synechococcus sp. WH 7803]
          Length = 145

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 35/148 (23%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN----IAAFII 73
            IA++D G  + GL + D            V +     A  +L+ +        +   +I
Sbjct: 3   RIAALDPGRSKCGLVLVDLDLG-------RVLEGQVAPAESVLATLEQWRGVGPLERMVI 55

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSR 129
           G     NG+            H        +P    DER TT++A++   +        R
Sbjct: 56  G-----NGTAS---------AHWRDQLPADLPLTVVDERGTTLAARRRYWELWPPQGWRR 101

Query: 130 KKRIQK------VDSIAAALILQEVLDR 151
                       +D++AA +IL+  L+R
Sbjct: 102 LLPEGLRIPPCDLDAVAALVILESALNR 129


>gi|254424331|ref|ZP_05038049.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335]
 gi|196191820|gb|EDX86784.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335]
          Length = 148

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 25/146 (17%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            +   D G  + G+A+    +   H    +    V+ T   L     T  I++ ++G   
Sbjct: 15  TLLGFDPGRDKCGVAVVGLDKAL-HYHQVISSPNVSATIQNLR---ETYPISSIVMG--- 67

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSR 129
                   +   ++ +   + +       V  DER +++ A+    +M         + R
Sbjct: 68  -------DQT-RSKQWKKQLGNLPNAPRIVLIDERYSSLEARDRYWEMYPPKGITKLLPR 119

Query: 130 KKRI--QKVDSIAAALILQEVLDRIS 153
             R   + +D I A L+++  L+R+S
Sbjct: 120 SLRSIPRPIDDIVAILLVERYLNRLS 145


>gi|86605919|ref|YP_474682.1| hypothetical protein CYA_1236 [Synechococcus sp. JA-3-3Ab]
 gi|86554461|gb|ABC99419.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 138

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 19/106 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
           +   D G  + GLA+         P    L R+     +    L +          I+G 
Sbjct: 2   LMGFDPGRDKCGLAV-----VQVQPAWQVLHREVVSAGEALARLQALWQQFGAERLILG- 55

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
                        + R +   +         V  DER ++  A++ 
Sbjct: 56  ----------NQTTARGWKRQLESLLPPQQIVLVDERHSSEEARRR 91


>gi|330839723|ref|YP_004414303.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC
           35185]
 gi|329747487|gb|AEC00844.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC
           35185]
          Length = 139

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 31/148 (20%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFII 73
           + +A++D G ++ G A+ D           ++ +KV +T    LE+    +       ++
Sbjct: 4   ETLAAVDPGREKCGFAVLDVHG-------TVLFQKVIETLKLGLEINDKCSRYAFTTLVL 56

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G     NG+              + +    +  V  DE  TT  A++           R 
Sbjct: 57  G-----NGTTSREAKK------RIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRR 105

Query: 134 ----------QKVDSIAAALILQEVLDR 151
                     + VD   A ++ +  L++
Sbjct: 106 LLPVSMLVPPEPVDDFVAVILARRFLEK 133


>gi|304437497|ref|ZP_07397455.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369547|gb|EFM23214.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 132

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 32/150 (21%)

Query: 16  NQPIASIDLGTKRIGLAI--SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +  + ++D G ++ G+A+  +D           +   ++T TA+ L+           I+
Sbjct: 2   SGAVLAVDPGREKCGVAVLAADGTVLLQ---EVVPTTQLTATAVRLIHT----YAPTVIM 54

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G     NG+      + RA +  +            DE  TT +A+      +  R  R 
Sbjct: 55  G-----NGTTS---AAARARIEEL-----GTEVTLVDEYRTTDAAKAAYWTAHPPRGWRR 101

Query: 134 QK----------VDSIAAALILQEVLDRIS 153
                       VD   A ++ Q  L  +S
Sbjct: 102 LMPRGMLVPPVPVDDFVAVILAQRYLTEVS 131


>gi|260886294|ref|ZP_05897557.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
 gi|260864013|gb|EEX78513.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
          Length = 140

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 31/148 (20%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFII 73
           + +A++D G ++ G A+ D           ++ +KV +T    LE+    +       ++
Sbjct: 5   ETLAAVDPGREKCGFAVLDVHG-------TVLFQKVIETLKLGLEINDKCSRYAFTTLVL 57

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
           G     NG+              + +    +  V  DE  TT  A++           R 
Sbjct: 58  G-----NGTTSREAKK------RIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRR 106

Query: 134 ----------QKVDSIAAALILQEVLDR 151
                     + VD   A ++ +  L++
Sbjct: 107 LLPVSMLVPPEPVDDFVAVILARRFLEK 134


>gi|158337164|ref|YP_001518339.1| hypothetical protein AM1_4040 [Acaryochloris marina MBIC11017]
 gi|158307405|gb|ABW29022.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 153

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 26/144 (18%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G ++ GLA+    +   H    +V    +Q    + +      I+  ++G    
Sbjct: 16  ILGFDPGRQKCGLAVMGIDQTI-HWHQVVVA---SQVIDSINALCEIYPISLLVMG---- 67

Query: 79  MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILID----MNVSR---- 129
            N +        + ++  + ++  + +  V  DER +T+ A+           + R    
Sbjct: 68  -NQTTS------KEWLQVLNEKYALNLDIVQVDERNSTLEARSRYWQIYPPQGIHRFIPQ 120

Query: 130 --KKRIQKVDSIAAALILQEVLDR 151
             +K    +D I A L+++  L++
Sbjct: 121 SLRKINHPIDDIVAILLIERYLEK 144


>gi|86609221|ref|YP_477983.1| hypothetical protein CYB_1763 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557763|gb|ABD02720.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 154

 Score = 47.2 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 11  KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENI 68
             LK  + +   D G  + G+A+             L R+ V   A    L +       
Sbjct: 8   ARLKSERVLIGFDPGRDKCGIAVVQV--FTQTELKVLHREVVPSAAALSRLQTLRQQFQA 65

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
              I+G              + +A+   +         V  DER ++  A+Q 
Sbjct: 66  EQVILG-----------NQTTAQAWKSQLESILPPQQIVLVDERHSSQEARQR 107


>gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens]
          Length = 548

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
           +P   +D G +R G+ +       + P   +     +T  A  +++    E   AF++GL
Sbjct: 474 EPTLGVDFGLRRTGVCVG--RGYASRPLEVVENCGNLTAHAAAIVALALREGATAFVVGL 531

Query: 76  PLNMNGSEGPRV 87
           PL+ +GSE  + 
Sbjct: 532 PLDRDGSETEQS 543


>gi|113954115|ref|YP_729548.1| hypothetical protein sync_0314 [Synechococcus sp. CC9311]
 gi|113881466|gb|ABI46424.1| conserved hypothetical protein [Synechococcus sp. CC9311]
          Length = 150

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 40/153 (26%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE---------NI 68
            + ++D G  + GL         A+     V K +   + E+L  +             I
Sbjct: 3   RVVALDPGRSKCGL-------LLANISTNTVLKAMVIPSAEVLDQLRAWMEDDQGENAQI 55

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----D 124
           A  +IG     +G+                     +     DE  TT+ A++        
Sbjct: 56  ADLVIG-----DGTSSTIWQQ---------QLPTSLKVHVVDETGTTLRARERYWQLWPA 101

Query: 125 MNVSR------KKRIQKVDSIAAALILQEVLDR 151
               R      +     +D+IAA +IL++ LDR
Sbjct: 102 RGWKRLLPLGLRIPSGDLDAIAALVILEDYLDR 134


>gi|186685566|ref|YP_001868762.1| resolvase domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186468018|gb|ACC83819.1| Resolvase, RNase H domain protein fold protein [Nostoc punctiforme
           PCC 73102]
          Length = 151

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 31/156 (19%)

Query: 11  KSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
           +   P QP I   D G  + GLA+    R+  +    ++ K+   T   L        I+
Sbjct: 4   REFSPTQPVILGFDPGRDKCGLAVMGLDRQL-YYHQVVLAKEAIATIETLRQ---KFPIS 59

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQI------- 121
             ++G           +  + + +   +       +  +  DER TT+ A+         
Sbjct: 60  LMVMG----------DQT-TAKQWREKLYQELTEPLSIILVDERYTTLEARDRYWQMFPP 108

Query: 122 -----LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
                L+   + +  R   +D I A L+++  L+R+
Sbjct: 109 KGLTKLLPQGLRQPPR--PIDDIVAILLIERYLNRL 142


>gi|300867463|ref|ZP_07112117.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334578|emb|CBN57285.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 132

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK----VTQTALELLSFITTENIAAFIIG 74
           I   D G  + G+A+              VR             + S  +   I   ++G
Sbjct: 2   ILGFDPGRDKCGIAV--------MGLDREVRYHQVVLAENAIATIESLCSQFPIELIVMG 53

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ------------IL 122
                + +        R++   +      V  V  DER +++ A+              L
Sbjct: 54  -----DQTTS------RSWKQKISASLPLVEVVQVDERYSSLEARDRFWEMFPPKGFNRL 102

Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
           I   +    R   VD I A ++++  L+
Sbjct: 103 IPQGMRTPPR--PVDDIVAIVLIERYLN 128


>gi|254416125|ref|ZP_05029880.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC
           7420]
 gi|196177058|gb|EDX72067.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC
           7420]
          Length = 127

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 30/142 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + GLA+    +        +      Q    +        I   ++G    
Sbjct: 2   ILGFDPGRDKCGLAVKGKDQEI-SYHQVIP---SDQAIATIKRLSQQFPIETIVMG---- 53

Query: 79  MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDM 125
            N +   +     R  +         +P V  DER +T+ A+            Q LI  
Sbjct: 54  -NQTTSKQWQGKIREVIS------APIPIVLVDERYSTLEARDRYWQMYPPKGLQRLIPQ 106

Query: 126 NVSRKKRIQKVDSIAAALILQE 147
            + +  R   +D I A L+++ 
Sbjct: 107 GMRQPPR--PIDDIVAILLIER 126


>gi|33239731|ref|NP_874673.1| hypothetical protein Pro0279 [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237256|gb|AAP99325.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 145

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
            + + SID G K+ G+ ++D    F      ++   V +    +  +     I   IIG 
Sbjct: 1   MRKVISIDPGHKKCGILLADVEGLFVIDGKTVINSSVIKL---IEDWREKYIIDLIIIG- 56

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
               NG+        R +    ID ++  P    DER+TT+ A+   ++
Sbjct: 57  ----NGTTS------RYWQGKFIDNEIG-PIELVDERMTTLLARSRYLE 94


>gi|312142812|ref|YP_003994258.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903463|gb|ADQ13904.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp.
           'sapolanicus']
          Length = 139

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 44/154 (28%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---------VTQTALELLSFITTENIA 69
           + S+D G  +IG A+             + R K         +T+    L        I 
Sbjct: 5   LLSLDPGRNKIGTAV-------------ISRDKEEREKTIVSLTEFEDHLNEIFDKYQIN 51

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVS 128
             I+G     NG+   ++      +       V       DE+ +T  AQ + L +  +S
Sbjct: 52  EIIVG-----NGTGAEKIIKKIEKLKINKKITV------VDEKFSTEEAQARYLREKPMS 100

Query: 129 RKKR----------IQKVDSIAAALILQEVLDRI 152
           R ++           + +D  AA +I ++ L+++
Sbjct: 101 RYEKLLRKFISWKVKKPLDDYAALIIAEKYLEKL 134


>gi|302392906|ref|YP_003828726.1| Resolvase RNase H domain protein fold protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204983|gb|ADL13661.1| Resolvase RNase H domain protein fold protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 127

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 33/144 (22%)

Query: 19  IASIDLGTKRIGLAIS-DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I  ID G  + GLA+  D                  +    +   I    +   +IG   
Sbjct: 2   ILGIDPGRDKCGLALMIDKEEI-----EICEVVATDRILDRIEELIAEYRVNKIVIG--- 53

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
             +G+              ++DR           DE  +T+ A+++    N     R   
Sbjct: 54  --DGTSSS----------ELLDRLDSDGFEIHQVDETNSTLEARKLYWQSNPPSSWRRLV 101

Query: 134 --------QKVDSIAAALILQEVL 149
                   + VD   A ++++  L
Sbjct: 102 PTSFQTPPEAVDGYVAVILIRRYL 125


>gi|139439282|ref|ZP_01772724.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
           25986]
 gi|133775306|gb|EBA39126.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
           25986]
          Length = 442

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 5   LIEDLVKSLK-PNQPIASIDLGTKRIG--LAISDPGR-RFAHPR--PFLVRKKVTQTALE 58
            +E L+ +       + ++D G  R G  +A+ D       H    P   R  V  T  E
Sbjct: 28  NLEGLLSARPVRGARVLALDPG-YRTGCKVAVMDETGKLLDHGVVYPTKPRHDVAGTKRE 86

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
           L   +  + +   +IG     NG+              + ++   + +   +E   +V +
Sbjct: 87  LARLVKKDGVNTIVIG-----NGTASRETEEV--VSEFIAEQAPSLRYTIVNEAGASVYS 139

Query: 119 QQILIDM 125
              L   
Sbjct: 140 ASELASQ 146


>gi|88808007|ref|ZP_01123518.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805]
 gi|88788046|gb|EAR19202.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805]
          Length = 145

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 27/143 (18%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            IA++D G  + GL + D           L    V +T  +  S    E +   ++G   
Sbjct: 3   RIAALDPGRSKCGLLLVDTDLGIVLEGHVLEGCSVLETLEQWRS---KEPLDRVVMG--- 56

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
             NG+      ++R +   +      +     DER TT+ A+    ++   +  R     
Sbjct: 57  --NGT------ASRHWRDQL---PADLQLTVVDERGTTLQARSRYWELWPPKGWRRLLPE 105

Query: 136 --------VDSIAAALILQEVLD 150
                   +D++AA +IL+  L+
Sbjct: 106 GLRIPPCDLDAVAALVILETALN 128


>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
 gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
          Length = 616

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 5   LIEDLVKSLKP-NQPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +    N+ +  +D G  R G+  A+ D   +    A   PF  R+        
Sbjct: 53  NLRDLLLAAPAGNKAVLGLDPGI-RTGVKAAVIDATGKVLDTATVYPFEPRRDREGAIRT 111

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
           L    T   +    IG     NG+       T   V ++      +P    
Sbjct: 112 LAGLATRYQVELVAIG-----NGTAS---RETEKLVADLQSAFPRLPLTRV 154


>gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1]
          Length = 773

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 22/137 (16%)

Query: 5   LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALE 58
            ++DL+ S      P+  +D G  R G  +A+ D        A   P   R     +   
Sbjct: 313 NLKDLLLSAPAGMVPVMGLDPGL-RTGVKVAVVDATGQVQTTATIYPHQPRNDWEGSIKA 371

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTV 116
           L   I    +    IG     NG+       T   V  +  R   +    V   E   +V
Sbjct: 372 LSLLIKKYKVPLIAIG-----NGTAS---RETDRLVAELNRRHPDLKVTAVVVSEAGASV 423

Query: 117 -----SAQQILIDMNVS 128
                 A Q L +M+VS
Sbjct: 424 YSASAYASQELPEMDVS 440


>gi|87301940|ref|ZP_01084774.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701]
 gi|87283508|gb|EAQ75463.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701]
          Length = 154

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 27/147 (18%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
           L     +A +D G  + GL  +D GR        LV     Q    L  ++    + A I
Sbjct: 9   LPSQGALAGLDPGRSKCGLVRTDRGR--QQLLEALVI-PPEQAWGRLEGWLLQGEVQAVI 65

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G     NG+                  +   P +  +E  +T++A+    ++N +R  R
Sbjct: 66  LG-----NGTGSASWRR---------RLEPLAPVLLVEEHGSTLAARARFFELNPTRGWR 111

Query: 133 I----------QKVDSIAAALILQEVL 149
                      +  D + A L+L+ +L
Sbjct: 112 RLLPQGLRQPPRDWDDVVAQLLLERLL 138


>gi|149183142|ref|ZP_01861591.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1]
 gi|148849125|gb|EDL63326.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1]
          Length = 24

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           KKR + +D +AAA ILQ  LD 
Sbjct: 1   KKRKKVIDKMAAAFILQGYLDS 22


>gi|307154188|ref|YP_003889572.1| Resolvase RNase H domain-containing protein fold protein
           [Cyanothece sp. PCC 7822]
 gi|306984416|gb|ADN16297.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
           7822]
          Length = 132

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 50/143 (34%), Gaps = 24/143 (16%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + G+AI    R+  +    +   +       + +      I   ++G    
Sbjct: 2   ILGFDPGRDKCGVAIMGNDRQI-YYHEVV---ESDGAISVINTLFQQYPIELLVMG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
                  +    +     + +    +P V  DER +++ A+    +M   +  +      
Sbjct: 54  --NQTTSKTWKAK-LETELAE---SIPIVMVDERNSSLEARDRYWEMYPPKGLQWFIPQG 107

Query: 134 -----QKVDSIAAALILQEVLDR 151
                + +D + A L+++  L++
Sbjct: 108 MRLPPRPIDDLVAILLIERYLNK 130


>gi|297185088|gb|ADI21197.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
          Length = 48

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 108 FWDERLTTVSAQQILI---DMNVSRKKRIQKVDSIAAALILQEVL 149
             DE  ++  A ++LI    + +  K + + VD+ AA LI +  L
Sbjct: 1   MIDESYSSKEANEMLILERRLGLRGKIKKEMVDAAAATLIAERWL 45


>gi|242054501|ref|XP_002456396.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor]
 gi|241928371|gb|EES01516.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor]
          Length = 51

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 1  MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPR 44
          M +L  E+L + +           +  +D+G+K +G+++SD   R A P 
Sbjct: 1  MRLLQAEELFRKVLEVGSKNKATRLLGLDVGSKYVGVSVSDEKNRIALPL 50


>gi|75909488|ref|YP_323784.1| resolvase, RNase H-like protein fold [Anabaena variabilis ATCC
           29413]
 gi|75703213|gb|ABA22889.1| Resolvase, RNase H-like fold protein [Anabaena variabilis ATCC
           29413]
          Length = 149

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 35/164 (21%)

Query: 3   ILLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
           ++ + +      P QP I   D G  + GLA+    R+  +    +           L  
Sbjct: 1   MMNLSEF----SPTQPVILGFDPGKDKCGLAVMGLDRQL-YYHQVVAAADAIAIINTLRQ 55

Query: 62  FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ 120
                 I+  ++G              + + +   +       +  V  DER +T+ A+ 
Sbjct: 56  ---QFPISMLVMG-----------NQTTAKRWKQQLQQELAEALNIVLVDERYSTLEARD 101

Query: 121 I------------LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
                        L+   + +  R   +D I A L+++  L R+
Sbjct: 102 RYWQMYPPQGLIKLLPHGMRQPPR--PIDDIVAILLIERYLSRL 143


>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
 gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
          Length = 791

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     + +  +D G  R G  +A+ D   +    A   PF  R+    T   
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L +      +    IG     NG+       +   V +M+ R   +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427


>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
          Length = 791

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     + +  +D G  R G  +A+ D   +    A   PF  R+    T   
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L +      +    IG     NG+       +   V +M+ R   +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427


>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
 gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
          Length = 791

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     + +  +D G  R G  +A+ D   +    A   PF  R+    T   
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L +      +    IG     NG+       +   V +M+ R   +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427


>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
 gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex
 gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
 gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
          Length = 791

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     + +  +D G  R G  +A+ D   +    A   PF  R+    T   
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L +      +    IG     NG+       +   V +M+ R   +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427


>gi|297379556|gb|ADI34443.1| Hypothetical protein HPV225_0354 [Helicobacter pylori v225d]
          Length = 81

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 88  HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQKVDSIAAALI 144
                F+  +         VF +E  +++ A + L  +    K+   +  ++DS++A  I
Sbjct: 13  ARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRI 69

Query: 145 LQEV 148
           L+  
Sbjct: 70  LERY 73


>gi|284053053|ref|ZP_06383263.1| hypothetical protein AplaP_16418 [Arthrospira platensis str.
           Paraca]
 gi|291566867|dbj|BAI89139.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 132

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 19  IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I   D G  + G+A + D          +            + S  +  ++   ++G   
Sbjct: 3   ILGFDPGRDKCGVAVVGDN-----QQVYYHQVVAANDAIATVESLCSQFSVQLVVMG--- 54

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM----NVSRKKR 132
             N +        R +   M       +  V  DER +++ A+    +M     +SR   
Sbjct: 55  --NQTTS------RTWKQQMRAVLPESIQIVEVDERYSSLQARDRYWEMYPPQGLSRLLP 106

Query: 133 IQK------VDSIAAALILQEV 148
                    +D I A ++++  
Sbjct: 107 QGMRVPPRPIDDIVAIILVERY 128


>gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
          Length = 702

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 12/87 (13%)

Query: 16  NQPIASIDLGTKRIG--LAI-SDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAA 70
           NQ I  ID G  R G  +A+ SD G     A   P   ++    +A  LL+ I    + +
Sbjct: 314 NQTILGIDPGF-RTGCKVAVISDDGLFLDSAVIYPTKPKEDFANSAKTLLALIKKHKVNS 372

Query: 71  FIIGLPLNMNGSEG-PRVHSTRAFVHN 96
             IG     NG+           F+  
Sbjct: 373 IAIG-----NGTASNETASFVSNFIKE 394


>gi|313894648|ref|ZP_07828211.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440838|gb|EFR59267.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 175

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 30/140 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+AI  P       R  +  K        LL+      I   + G    
Sbjct: 7   ILAVDPGNEKTGVAIVTPDGSMV-CRNIISTKTFNDDIERLLT--EYYGIVHIVCG---- 59

Query: 79  MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
            NG+      P +            R   +     DE  +T  A+++    N     R  
Sbjct: 60  -NGTNHKYLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKF 110

Query: 134 ---------QKVDSIAAALI 144
                    + VD + A +I
Sbjct: 111 LPTSMQFPPEPVDDLTALVI 130


>gi|144575166|gb|AAZ43956.2| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 705

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 26/150 (17%)

Query: 16  NQPIASIDLGTKRIGL---AISDPG--RRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
              I +ID G    G    A+S+ G     A   P   R  V+Q   ++L  I   NI  
Sbjct: 313 GHNILAIDPGYVS-GCKLAALSEKGSVLEIATIYPNEPRSNVSQAKTKVLELIKKHNITI 371

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-SAQQILIDM-- 125
            +IG     NG+       T  F++N+I         F    E   +V SA +I I+   
Sbjct: 372 IVIG-----NGTAS---RETEQFINNLIQENNLDNIYFCIVSEAGASVYSASEIAIEEFP 423

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           N+S +KR       +A  I ++ LD ++ L
Sbjct: 424 NLSVEKR-------SAINIGRKFLDPLNEL 446


>gi|71894559|ref|YP_278667.1| hypothetical protein MS53_0548 [Mycoplasma synoviae 53]
          Length = 698

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 26/150 (17%)

Query: 16  NQPIASIDLGTKRIGL---AISDPG--RRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
              I +ID G    G    A+S+ G     A   P   R  V+Q   ++L  I   NI  
Sbjct: 306 GHNILAIDPGYVS-GCKLAALSEKGSVLEIATIYPNEPRSNVSQAKTKVLELIKKHNITI 364

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-SAQQILIDM-- 125
            +IG     NG+       T  F++N+I         F    E   +V SA +I I+   
Sbjct: 365 IVIG-----NGTAS---RETEQFINNLIQENNLDNIYFCIVSEAGASVYSASEIAIEEFP 416

Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
           N+S +KR       +A  I ++ LD ++ L
Sbjct: 417 NLSVEKR-------SAINIGRKFLDPLNEL 439


>gi|56751384|ref|YP_172085.1| hypothetical protein syc1375_c [Synechococcus elongatus PCC 6301]
 gi|81298940|ref|YP_399148.1| resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942]
 gi|56686343|dbj|BAD79565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81167821|gb|ABB56161.1| Resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942]
          Length = 143

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 28/141 (19%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77
              D G  + GLA+       A     L  +     +    L       +    ++G   
Sbjct: 9   IGFDPGRDKCGLAL-----MEAQTGQILEHRILASAEAIAVLAQLFQARSPQLLVLG--- 60

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
             N +   +  +       +       P    DER +T+ A+     M   R  R     
Sbjct: 61  --NQTTSQQWQA------QLSALPSAPPIALVDERNSTLEARDRYWQMYPVRGWRRLLPQ 112

Query: 134 ------QKVDSIAAALILQEV 148
                 + VD + A L+L+  
Sbjct: 113 GLRQPPRPVDDLVAILLLERY 133


>gi|315929041|gb|EFV08280.1| holliday junction resolvase-like domain protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 63

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 83  EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
           E       + FV  +   +      F DE  T+  A   L     + +K+  K+DS++A 
Sbjct: 1   EEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSLSAF 54

Query: 143 LILQEVL 149
           +++++  
Sbjct: 55  IMIKDYF 61


>gi|292669941|ref|ZP_06603367.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648412|gb|EFF66384.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 143

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 30/145 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIG 74
           + P+ +ID G ++ G+A+       A     + +   T      +   I     A  ++G
Sbjct: 2   SGPVLAIDPGREKCGVAV-----LSAGGAILVRKVVATADLGSCVGGLIAAHEPA-VVMG 55

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
                NG+      +            + V     DE  TT  A+++  D++  R  R  
Sbjct: 56  -----NGTTSAEAKT--------RVECLGVTVTLADEYRTTDEAKRLYWDVHPPRGWRRF 102

Query: 135 K----------VDSIAAALILQEVL 149
                      VD   A ++ +  L
Sbjct: 103 VPRGMLVPPVPVDDFVAVILARRFL 127


>gi|113475680|ref|YP_721741.1| resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101]
 gi|15420712|gb|AAK97425.1|AF382392_1 unknown [Trichodesmium erythraeum IMS101]
 gi|110166728|gb|ABG51268.1| Resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101]
          Length = 133

 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 30/145 (20%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I   D G  + G+AI D  R+  H    +   K+T   + +       +I   IIG    
Sbjct: 2   ILGFDPGRDKCGIAIMDKNRQL-HYNQVVDSAKIT---ITITKLSQQFDINLIIIG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ------------ILIDM 125
            + +             N+ +     +P +  DER +++ A+              LI  
Sbjct: 54  -DQTTSKIWQQ------NLTEIISEKIPIIKIDERYSSLEARDRYWQINPPQGFVRLIPP 106

Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
            +  +   + +D I A ++++  L+
Sbjct: 107 GM--RIPPKPIDDIVAIILIERYLN 129


>gi|223996479|ref|XP_002287913.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977029|gb|EED95356.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 242

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 19/109 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVT-----------QTALELLSFITT 65
           +  +D+  +RIG+A+S+  + F+ P     ++ +              ++ LEL + +  
Sbjct: 29  VMGLDITRERIGIAVSEHPKHFSEPLALNSILLQDRDSSSNRSKGIAKESLLELEAAVRK 88

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-----PFVFW 109
            ++ AF++  PLN  G  G +       + +++D+   V     PF  W
Sbjct: 89  HHVCAFVVNWPLN-EGRMGEQCGKVLQVLDSVMDQSNSVVTRKRPFTLW 136


>gi|320530393|ref|ZP_08031452.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399]
 gi|320137357|gb|EFW29280.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399]
          Length = 133

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 28/144 (19%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + +ID G  + G+A+             L     T      +S +  E     I+G 
Sbjct: 1   MSTVLAIDPGRDKCGIAV-----LSPQGDILLHEIVPTGALETRVSELAAEYAPRIIMG- 54

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
               +G+      +        I+ +V       DE  TT   +++    N  R  R   
Sbjct: 55  ----DGTTSAATKA-------RIEAQVGA-VTLVDEYRTTEEGRRLYWAENPPRGWRRLV 102

Query: 136 ----------VDSIAAALILQEVL 149
                     VD  AA  + +  L
Sbjct: 103 PRGLLTPTVPVDDFAAVALARRFL 126


>gi|294793347|ref|ZP_06758492.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
 gi|294455778|gb|EFG24143.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
          Length = 175

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+AI  P       R  +      +    +L+      I   + G    
Sbjct: 7   ILAVDPGNEKTGVAILSPSGEM-ICRKIISSNTFNKDIERILT--EYYGIVHIVCG---- 59

Query: 79  MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
            NG+      P +            R   +     DE  +T  A+++    N     R  
Sbjct: 60  -NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRKI 110

Query: 134 ---------QKVDSIAAALI 144
                    + VD + A +I
Sbjct: 111 IPTSMQFPPEPVDDLTALVI 130


>gi|269797615|ref|YP_003311515.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008]
 gi|269094244|gb|ACZ24235.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008]
          Length = 175

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+AI  P       R  +      +    +L+      I   + G    
Sbjct: 7   ILAVDPGNEKTGVAILSPSGEM-ICRKIISSNTFNKDIERILT--EYYGIVHIVCG---- 59

Query: 79  MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
            NG+      P +            R   +     DE  +T  A+++    N     R  
Sbjct: 60  -NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRKI 110

Query: 134 ---------QKVDSIAAALI 144
                    + VD + A +I
Sbjct: 111 IPTSMQFPPEPVDDLTALVI 130


>gi|52549635|gb|AAU83484.1| conserved hypothetical protein [uncultured archaeon GZfos28G7]
          Length = 431

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 19/125 (15%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID GT  IG+AI D      +P      K  +    +++  I +      +      
Sbjct: 13  IVGIDPGT-TIGVAIIDLEG---NPIEVFSSKNYS--CSDVIERIISRGNPLIV-----A 61

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
            + +  P            I R    P    DE L+T   +  L        K + + D+
Sbjct: 62  SDVTPTPSTVK-------RISRIFSSPVHELDESLSTEE-KIALTKGEGYEYKNVHERDA 113

Query: 139 IAAAL 143
           +AA +
Sbjct: 114 LAACV 118


>gi|260881399|ref|ZP_05404313.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
 gi|260848853|gb|EEX68860.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
          Length = 137

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 31/142 (21%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFI 72
            + IA++D G ++ G A+     +       ++ ++V +TA    E+ +       A  +
Sbjct: 3   MERIAALDPGREKCGFAVLREDGK-------VLMQRVIETAQLEQEVRAAREEHGFAVLV 55

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
            G     NG+      +       +      +     DE  TT  A++        R  R
Sbjct: 56  EG-----NGTTSREARA------RLQKALPDLCIEVVDEYRTTDLAKKAYWKAKPPRGWR 104

Query: 133 I----------QKVDSIAAALI 144
                      + VD   A ++
Sbjct: 105 RLLPVTMQVPPEPVDDFVAVIL 126


>gi|313895762|ref|ZP_07829317.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975591|gb|EFR41051.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 133

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 28/137 (20%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
              + +ID G  + G+A+             L     T      +S +  E     I+G 
Sbjct: 1   MSTVLAIDPGRDKCGIAV-----LSPQGDVLLHEIVPTAALETRVSELAAEYAPRIIMG- 54

Query: 76  PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
               +G+      +        I+ +     +  DE  TT   +++    N  R  R   
Sbjct: 55  ----DGTTSAAAKA-------RIEAQAGA-VILVDEYRTTEEGRRLYWAENPPRGWRRLV 102

Query: 136 ----------VDSIAAA 142
                     VD  AA 
Sbjct: 103 PRGLLTPAVPVDDFAAV 119


>gi|217076628|ref|YP_002334344.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B]
 gi|217036481|gb|ACJ75003.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B]
          Length = 675

 Score = 41.1 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
            ++ I +ID G K  G  +A+ D   +F   A   P      +  +   ++  I   ++ 
Sbjct: 299 KDKRILAIDPGNKT-GCKIAVLDENGKFLEKAIIFPTPPHNDIENSEKIVIELIKKFDLN 357

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTV 116
             +IG     NG+       T+ F+ N I +  + V ++F +E   +V
Sbjct: 358 LIVIG-----NGTAS---RETQKFIVNTIKKFNLDVKYIFANEAGASV 397


>gi|261885965|ref|ZP_06010004.1| Holliday junction resolvase-like protein [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 58

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
                ++ DE  ++  A +      +S+  +  + DSIAA +IL+  L+
Sbjct: 14  FDSEIIYVDEAYSSCEASE------LSKDSKDGRFDSIAAMVILKRYLN 56


>gi|87125088|ref|ZP_01080935.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917]
 gi|86167408|gb|EAQ68668.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917]
          Length = 143

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 37/147 (25%)

Query: 18  PIASIDLGTKRIGLAISDPGR-----RFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
            + +ID G  + GL + +  R         P              ++  +   E I+  +
Sbjct: 3   RLLAIDPGRSKCGLVLCELNRHRVIEGLVLPVE--------DVLHQIQRWSDEEPISTVV 54

Query: 73  IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
           +G     NG+          +   +   +  +P    +ER TT+ A+     +   R  R
Sbjct: 55  LG-----NGTGSA------DWEQRL---RPLLPVELVEERGTTLRARARYWTLRPPRGWR 100

Query: 133 IQK----------VDSIAAALILQEVL 149
                        +D+ AA ++L++  
Sbjct: 101 RLLPEGLRLPPLDLDAFAALVMLEDHF 127


>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
 gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
          Length = 775

 Score = 41.1 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     +    ID G  R G  +A+ D   +    A   P   + K+ ++A  
Sbjct: 313 NLKDLLMAAPAGPRCTLGIDPGL-RTGCKVAVVDATGKLLDTATIYPTPPQNKIAESARV 371

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVS 117
           +++ I    +    IG     NG+       T AFV  M+      +  V   E   +V 
Sbjct: 372 VMALIKKHKVDLIAIG-----NGTAS---RETDAFVAAMLKDAGEKIQTVMVSEAGASVY 423

Query: 118 AQQILIDM 125
           +   L   
Sbjct: 424 SASELAAA 431


>gi|20095000|ref|NP_614847.1| translation initiation factor 2, GTPase [Methanopyrus kandleri
           AV19]
 gi|19888260|gb|AAM02777.1| Translation initiation factor 2, GTPase [Methanopyrus kandleri
           AV19]
          Length = 744

 Score = 41.1 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 39/145 (26%), Gaps = 23/145 (15%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGLAI------SDPGRRFAHPRPFLVRKKVTQTALELLS- 61
           L+ S     PI S+D G    G+A        D             R    +     L  
Sbjct: 487 LLSSAGAGGPILSVDPGEVNFGIAYIPRRGPCDVTSVKLTGHT---RDAKVEELRRTLKM 543

Query: 62  -FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
                E      +G     NG            V  + D       V  DER TT  A  
Sbjct: 544 FLADREEPNLVYVG-----NGPGHDVA------VEALGDVLPEAEIVLVDERETTKEAVY 592

Query: 121 ILIDMNVSRKKRIQKVDS-IAAALI 144
            L    +   +     D  +AA  I
Sbjct: 593 RLSSGKLENVRSRDLRDHGVAALAI 617


>gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 720

 Score = 41.1 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404


>gi|22298193|ref|NP_681440.1| hypothetical protein tlr0651 [Thermosynechococcus elongatus BP-1]
 gi|22294372|dbj|BAC08202.1| tlr0651 [Thermosynechococcus elongatus BP-1]
          Length = 143

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 35/153 (22%)

Query: 10  VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTEN 67
           + ++   +     D G  + GLA        A  +  +  +     +    +  +     
Sbjct: 1   MMAMGRTKYFLGFDPGQDKCGLA-------LALGQEVVRHEVVASDRAIACVQEWHQAYP 53

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-------- 119
               IIG     N +   R           +   + V  +  DER +T+ A+        
Sbjct: 54  FEQVIIG-----NQTTSRRWQQ-------QLQAALAVEIIPVDERHSTLEARDRYWQLFP 101

Query: 120 ----QILIDMNVSRKKRIQKVDSIAAALILQEV 148
               Q LI   +    R   +D I A ++L+  
Sbjct: 102 PRGWQRLIPKGLRVPPR--PIDDIVAIVLLERY 132


>gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 720

 Score = 40.7 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404


>gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 720

 Score = 40.7 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404


>gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 720

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404


>gi|325116530|emb|CBZ52084.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 711

 Score = 40.7 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 91  RAFVHNMIDRKVYVP--FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
           RA   N  D    +P     +DE LTT  A++   +    R  R   +DS +AA++ +  
Sbjct: 600 RAKKGNQTDASPALPPAVFLYDESLTTAEARRAQKE----RSSRGDFLDSQSAAVLGRRF 655

Query: 149 LDR 151
           LD 
Sbjct: 656 LDE 658


>gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 778

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G+  A+ D   +    A   P   RK    +   
Sbjct: 319 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDTTGKLVETATVFPHEPRKDWDGSLHT 377

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS- 117
           L        +    IG     NG+       T     +++ R   +  V   E   +V  
Sbjct: 378 LAKLCEKHGVNLIAIG-----NGTAS---RETDKLAADLMKRIDGMQRVVVSEAGASVYS 429

Query: 118 ----AQQILIDMNVSRK 130
               A Q + D++VS +
Sbjct: 430 ASEFASQEMPDVDVSLR 446


>gi|312897530|ref|ZP_07756950.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis
           F0359]
 gi|310621382|gb|EFQ04922.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis
           F0359]
          Length = 138

 Score = 40.7 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA----FIIG 74
           I +ID G+ + G+A+               ++K       LL ++     +      ++G
Sbjct: 2   ILAIDPGSVKTGVALVHEDGEL--------KEKRIIPTQSLLQYVQECYDSGALKSVVMG 53

Query: 75  LPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
                +G+      +  ++++    +    V F + +E+ TTV  +++       +  R 
Sbjct: 54  -----DGTRHESLGNLVKSWIG---EGHDEVSFSYVNEKFTTVEGRKLYWQYTPRKGWRK 105

Query: 134 ----------QKVDSIAAALI 144
                     + VD   A +I
Sbjct: 106 FVPTSWQYPPEPVDDFVAWII 126


>gi|309390180|gb|ADO78060.1| resolvase RNase H domain protein fold protein [Halanaerobium
           praevalens DSM 2228]
          Length = 145

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 36/150 (24%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
           + ++D G  +IG A+ D            V++K      EL  ++        +   I+G
Sbjct: 5   LLALDPGRDKIGAAVLD--------YQAQVQEKTIVPLTELEDYLEELDCNYQLQEVIVG 56

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-PFVFWDERLTTVSAQ-QILIDMNVS---- 128
                NG+ G         V  ++ +           E  TT +AQ + L +  +S    
Sbjct: 57  -----NGT-GAAG------VMELLQKNFDFKKINLVVEEFTTEAAQKRYLKEKPMSNYEK 104

Query: 129 --RK----KRIQKVDSIAAALILQEVLDRI 152
             RK    K  + +D  AA +I ++ L ++
Sbjct: 105 LLRKFVNWKVSKALDDYAALIIGEKYLKKL 134


>gi|325831217|ref|ZP_08164509.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
 gi|325486818|gb|EGC89265.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 717

 Score = 40.3 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
               I ++D G  R G  +A+ D   +        P   R +V +T  +L +++    I 
Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +IG     NG+              +   K  V +   +E   +V +   L
Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417


>gi|148243441|ref|YP_001228598.1| polynucleotidyl transferase [Synechococcus sp. RCC307]
 gi|147851751|emb|CAK29245.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily
           [Synechococcus sp. RCC307]
          Length = 141

 Score = 40.3 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 21  SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
           ++D G ++ GL  +D     A     L+     +    L  +     +   ++G     +
Sbjct: 7   ALDPGRQKCGLVRTDASG--AELVDLLIC-SPREAWDWLQHWQHQAPLQGVVLG-----D 58

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ----QILIDMNVSRKKRIQK- 135
           G+              + + +  VP V   E  +T++A+    Q+L      R       
Sbjct: 59  GTASGPWQQA------LAELEPAVPVVLQPEAGSTLAARERYWQLLPARGWQRLLPRGLR 112

Query: 136 -----VDSIAAALILQEVL 149
                VD +AA ++L+  L
Sbjct: 113 LPPRPVDDLAAMVLLEAHL 131


>gi|257791221|ref|YP_003181827.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|257475118|gb|ACV55438.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
          Length = 717

 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
               I ++D G  R G  +A+ D   +        P   R +V +T  +L +++    I 
Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +IG     NG+              +   K  V +   +E   +V +   L
Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417


>gi|317488041|ref|ZP_07946622.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
 gi|316912871|gb|EFV34399.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
          Length = 717

 Score = 40.3 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
               I ++D G  R G  +A+ D   +        P   R +V +T  +L +++    I 
Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +IG     NG+              +   K  V +   +E   +V +   L
Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417


>gi|169836674|ref|ZP_02869862.1| hypothetical protein cdivTM_06152 [candidate division TM7
          single-cell isolate TM7a]
          Length = 43

 Score = 40.3 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 18 PIASIDLGTKRIGLAISDPGRRF 40
           +  +D+G KRIG+A++D G + 
Sbjct: 21 RLLCLDVGEKRIGVAVADLGVKI 43


>gi|323140937|ref|ZP_08075850.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414675|gb|EFY05481.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 136

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
             +D G  + GLA+     +       L        A EL  F+ +  +   I+G     
Sbjct: 5   LGVDPGRSKTGLALVAADGKILS----LHIAMTDNLAAELRQFVGSAKLQGIIMG----- 55

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI------ 133
           NG+        +A    + +    +      E  +T  A+ +    N  +  R       
Sbjct: 56  NGTNN------KAIGAVLRELYPDLVPELVGEAYSTEEARSLYWQENPPKGWRKLVPLGL 109

Query: 134 ----QKVDSIAAALILQEVL 149
               + +D+ AA + ++  L
Sbjct: 110 LVPPEPLDAYAAVVQVRRWL 129


>gi|167945469|ref|ZP_02532543.1| hypothetical protein Epers_02645 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 57

 Score = 40.3 bits (94), Expect = 0.097,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAH 42
           +   D GT++IG+A+       A 
Sbjct: 2  TLLGFDFGTRKIGVAVGQTVSGTAS 26


>gi|33864100|ref|NP_895660.1| hypothetical protein PMT1833 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635684|emb|CAE22008.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 152

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 27/142 (19%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + ++D G  + GL         A      V +     A  +L  I      A + G+ +
Sbjct: 12  RLVAVDPGRNKCGL-------VLADTATNAVLEGKVVAAAAVLDLIMHWQNQAPLAGILI 64

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSRKKRI 133
             NG+          +  N++     +     +ER +T+ A+    +     N  R    
Sbjct: 65  G-NGTSSE-------YWQNLLRHIAPLHV--VEERGSTLRARHRYWELWPPSNWRRWLPR 114

Query: 134 QKV------DSIAAALILQEVL 149
             +      D+IAA ++L++ L
Sbjct: 115 GMILPPHHLDAIAAMVLLEDHL 136


>gi|210629846|ref|ZP_03296143.1| hypothetical protein COLSTE_00026 [Collinsella stercoris DSM 13279]
 gi|210160786|gb|EEA91757.1| hypothetical protein COLSTE_00026 [Collinsella stercoris DSM 13279]
          Length = 271

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 23/129 (17%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
            A P   + R    +T   +       NIA  +   P  M+G +  RV + RA V     
Sbjct: 123 IALPL-TIARTPAKETLARVEQVAQRLNIAGVLDKYPYQMSGGQQQRVAAARALV----- 176

Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAALILQEVLD 150
                  +  DE    L + +A ++L++    ++R+ +   +    DS AA        +
Sbjct: 177 --TDPAVILADEPTGALDSKNA-RLLLESLEAMNRQYQATVLMVTHDSFAA-----SYTN 228

Query: 151 RISFLESSK 159
           R+ F+   +
Sbjct: 229 RVLFIRDGR 237


>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
 gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
          Length = 718

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALELLSFITTENIA 69
            ++ +  ID G  R G  +A+ D        A   P   +KKV++   +L   IT  N+ 
Sbjct: 315 RDKRVLGIDPGF-RTGSKVAVVDEIGNLLATAAIYPHPPQKKVSEAKEQLEELITEYNVD 373

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTV 116
              IG     NG+       T      +I   ++ + +V  +E   +V
Sbjct: 374 LIAIG-----NGT---ACRETEELAAEIIKESELDLHYVIVNEAGASV 413


>gi|317010615|gb|ADU84362.1| Holliday junction resolvase-like protein [Helicobacter pylori
           SouthAfrica7]
          Length = 84

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
            ++G P   N +          F+  ++D       VF +E  +++ A + L  +    K
Sbjct: 2   LVVGKP---NENYADTNIRIEHFI-KLVD--FKGEIVFINEDSSSIEACENLEYLGRKNK 55

Query: 131 K---RIQKVDSIAAALILQEV 148
           +   +  ++DS++A  IL+  
Sbjct: 56  RLAIKDGRLDSLSACGILERY 76


>gi|168053781|ref|XP_001779313.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669325|gb|EDQ55915.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 632

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 44  RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
              L+ ++    AL LL     E   A  + L     G E     + R F  N+ +RK  
Sbjct: 88  LDVLLTERRVDDALALL-----EEGEALAVRLSKANGGVESVNRDAVRQFEENLSERKSG 142

Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI-----AAALILQEVLDRIS 153
           +     D       A + L       +  I  +D +     A  L+LQ   +R+ 
Sbjct: 143 LVVYLVD-------AVRQLTFRGSELRHAIAALDKLGDGSRAHTLLLQSHEERLK 190


>gi|282850062|ref|ZP_06259444.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|282580251|gb|EFB85652.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
          Length = 175

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 32/141 (22%)

Query: 19  IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
           I ++D G ++ G+A +S  G      R  +      +    +L+      I   + G   
Sbjct: 7   ILAVDPGNEKTGIAIVSPSGEMIC--RKIISSNTFNEDIERVLT--EYYGIVHIVCG--- 59

Query: 78  NMNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
             NG+      P +            R   +     DE  +T  A+++    N     R 
Sbjct: 60  --NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRK 109

Query: 134 ----------QKVDSIAAALI 144
                     + VD + A +I
Sbjct: 110 IIPTSMQFPPEPVDDLTALVI 130


>gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 720

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404


>gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 720

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404


>gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101]
 gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101]
          Length = 720

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404


>gi|290968959|ref|ZP_06560494.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290780915|gb|EFD93508.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 138

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 29/146 (19%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75
           I SID G+++ G+A+             LV K +  TA     L        IA  ++G 
Sbjct: 2   IFSIDPGSEKTGIAVIRQDG-------TLVEKHIIPTAALLSVLQDKTQQYTIAHIVMG- 53

Query: 76  PLNMNGSEG-PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
               +G+   P       +   +   +V + F   +E+ TTV  +++       R  R  
Sbjct: 54  ----DGTNHKPLQVQVEQW---LQSNRVPIDFSLVNEKFTTVEGRRLYFQYTPLRGWRRF 106

Query: 134 ---------QKVDSIAAALILQEVLD 150
                    + VD   A +I +  L+
Sbjct: 107 IPRAWQYPPEPVDDFVAWIIGKRYLE 132


>gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13]
 gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 720

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
           L+++    + +   D G  R G  +AI D   +F       P   + ++ +T   L   I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
               +    +G     NG+         A +   I  +      + 
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404


>gi|91203240|emb|CAJ72879.1| strongly similar to maltose transport system ATP-binding protein
           [Candidatus Kuenenia stuttgartiensis]
          Length = 359

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
            A P      K + +        +    I   +   P  ++G E  RV   RA V N   
Sbjct: 95  IAFPLRIRKAKDLNENVENTARML---GINNLLQKYPKELSGGEKQRVALARALVRN--- 148

Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
                     DE L+ + A+  +      +K + Q+
Sbjct: 149 ----PQVFLMDEPLSNLDARLRISARGELKKLQKQR 180


>gi|118588274|ref|ZP_01545683.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
 gi|118438980|gb|EAV45612.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
          Length = 846

 Score = 39.2 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     +    +D G  R G+  A+ D   +    A   PF  R  V+ +   
Sbjct: 357 NLKDLLLAAPAGSRTTLGLDPGI-RTGVKVAVVDATGKLVDTATIYPFQPRNDVSGSRAA 415

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
           LL+ I    +    IG     NG+       
Sbjct: 416 LLALIAKHKVGLIAIG-----NGTASRETDK 441


>gi|170078280|ref|YP_001734918.1| hypothetical protein SYNPCC7002_A1673 [Synechococcus sp. PCC 7002]
 gi|13924476|gb|AAK49024.1| hypothetical protein [Synechococcus sp. PCC 7002]
 gi|169885949|gb|ACA99662.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 133

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 30/144 (20%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
              D G  + GLA  D   +  +    +   +    A E   +     ++  ++G     
Sbjct: 5   LGFDPGRDKCGLAALDDQGQLLN-HGVIAADQAPNIAKE---WCQRYGVSLVVMG----- 55

Query: 80  NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ------------QILIDMN 126
                    + + +   +       +   F +ER +T+ A+            Q L+   
Sbjct: 56  ------NQTTAKEWHQKLTAVLPPDMAIAFVNERNSTLEARDRYWQMYPPNLFQRLLPQG 109

Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
           +    R   +D I A L+++  L+
Sbjct: 110 MRLPPR--PIDDIVAILLVERYLN 131


>gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7]
 gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7]
          Length = 804

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL---AISDPGRR---FAHPRPFLVRKKVTQTAL 57
            ++DL+ +     + +  +D G  R G+   AI D   +    +   PF  R+    +  
Sbjct: 345 NLKDLLLAAPAGPKTVLGLDPGI-RTGVKVAAI-DATGKVLATSTVYPFEPRRDREGSIN 402

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
            L + IT   I    IG     NG+       T   V +M ++   +     
Sbjct: 403 TLAALITKHKIELVAIG-----NGTAS---RETEKLVTDMQEKFPDLKLTRV 446


>gi|319408675|emb|CBI82330.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 156

 Score = 38.8 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
          +Q I  +DLGTK  G AIS      A        ++     +  L F
Sbjct: 5  SQTILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50


>gi|305664326|ref|YP_003860614.1| hypothetical protein Igag_1941 [Ignisphaera aggregans DSM 17230]
 gi|304378895|gb|ADM28734.1| hypothetical protein Igag_1941 [Ignisphaera aggregans DSM 17230]
          Length = 220

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 33/135 (24%)

Query: 19  IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTE----NIAAF 71
           I  ID G   IG+AI   SD           +   K  +  LE+L          +I   
Sbjct: 102 IVGIDFGD-SIGIAIFVNSD--------IVLVNSYKSKEKVLEILKMFIEYSDSIDIKTI 152

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTVSAQQILIDMNVSR 129
            IGLP  ++           AFV  +I      P    F  E  ++   Q+  ID     
Sbjct: 153 RIGLPRFLSDKYN-------AFVDTLIKSFRNHPVNFEFVPEDKSSK--QRQFID----- 198

Query: 130 KKRIQKVDSIAAALI 144
                  DSIAA  I
Sbjct: 199 -NMKLDKDSIAAINI 212


>gi|223933143|ref|ZP_03625135.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|223898204|gb|EEF64573.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
          Length = 713

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P     ++++ Q   +L   I  
Sbjct: 301 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTQVIYPVEPAGQRQIAQAKKDLADLIGQ 357

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV +++     V +V  +E   +V +   L
Sbjct: 358 YQVEIIAIG-----NGTAS---RESEAFVADLLKDFPDVSYVIVNESGASVYSASEL 406


>gi|330833236|ref|YP_004402061.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3]
 gi|329307459|gb|AEB81875.1| RNA binding S1 domain protein [Streptococcus suis ST3]
          Length = 713

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P     ++++ Q   +L   I  
Sbjct: 301 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTQVIYPVEPAGQRQIAQAKKDLADLIGQ 357

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV +++     V +V  +E   +V +   L
Sbjct: 358 YQVEIIAIG-----NGTAS---RESEAFVADLLKDFPDVSYVIVNESGASVYSASEL 406


>gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 776

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +      +  +ID G  R G  +A+ D   +    A   P     K+ +    
Sbjct: 313 NLKDLLMAAPAGPRVTLAIDPGL-RTGSKIAVVDETGKLLDTATIYPHAPHNKIAEAGKV 371

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           +L+FI    +    IG     NG+       T +FV  +I 
Sbjct: 372 VLAFIAKYQVNLIAIG-----NGTAS---RETDSFVAQLIK 404


>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
 gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
          Length = 790

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 15/106 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     + +  +D G  R G  +A+ D   +    A   PF  R     T   
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVIDRTGKVVDTATVYPFEPRMDRKGTINT 389

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L +      +    IG     NG+       +   V  M+ +   +
Sbjct: 390 LAALCAKHKVELIAIG-----NGTAS---RESEKLVGEMMSQFSEL 427


>gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
          Length = 759

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
           ++ +  +D G  R G  LA  D   R+   A   P   + ++     +LL  I T  I  
Sbjct: 323 SRRVLGVDPGL-RTGSKLAAVDGTGRYLEDATIYPHTGKSQIEPARAQLLRLIQTHGIEM 381

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
             IG     NG+ G  +     FV   + D  V +P V  +E   +V SA  I  +
Sbjct: 382 VAIG-----NGTAGREMDL---FVRETLRDAGVQLPVVMVNEAGASVYSASDIARE 429


>gi|294795166|ref|ZP_06760300.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
 gi|294453958|gb|EFG22333.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
          Length = 175

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 30/140 (21%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G ++ G+AI  P       R  ++ K+       +L+      I   + G    
Sbjct: 7   ILAVDPGNEKTGVAIVTPSGTMV-CRKIIMTKQFNGEIERILT--EYYGIVHMVCG---- 59

Query: 79  MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
            NG+      P +            R   +     DE  +T  A+++    N     R  
Sbjct: 60  -NGTNHKYLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKI 110

Query: 134 ---------QKVDSIAAALI 144
                    + VD + A +I
Sbjct: 111 IPTSMQFPPEPVDDLTAFVI 130


>gi|24379213|ref|NP_721168.1| transcriptional accessory protein [Streptococcus mutans UA159]
 gi|24377125|gb|AAN58474.1|AE014917_5 conserved hypothetical protein; possible transcriptional accessory
           protein [Streptococcus mutans UA159]
          Length = 708

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q   EL   I  
Sbjct: 305 KGKVVLGFDPAF---RTGAKLAVVDQTGKLIMTQVIYPVPPASQSKINQAKSELAELIKR 361

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 362 YAIEIIAIG-----NGTAS---RESEAFVAEILKDFPQVSYVLVNESGASVYSASEL 410


>gi|160902641|ref|YP_001568222.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360285|gb|ABX31899.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 720

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 15  PNQPIASIDLGTKRIG---LAISDPGRRFA--HPRPFLVRKKVTQTALELLSFITTENIA 69
            N+ + +ID G  R G   +A+ + G   A     P   +  +  +   ++  I   N+ 
Sbjct: 308 KNKRVLAIDPGF-RTGCKVVALDEMGNFLANDTIFPVPPQNDIENSEKIMMGLIQKYNVN 366

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
              IG     NG+       T+ FV ++I + K+ + ++F DE   +V +   L
Sbjct: 367 LIAIG-----NGTAS---RETQQFVVDLIKKNKLNLKYIFVDESGASVYSASKL 412


>gi|300785862|ref|YP_003766153.1| ROK family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795376|gb|ADJ45751.1| ROK family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 400

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 20/73 (27%)

Query: 18  PIASIDLGTKRIGLAISDPGR-RFAH----------PRPFLVRKKVTQTALELLSFITTE 66
            + ++D+G   +G+A++D      AH          P P L R        EL + I  E
Sbjct: 83  RVLAVDVGATSVGVAVTDASCEVLAHTVEDGDVRQGPHPVLRR------VAELAAKIRDE 136

Query: 67  NIAAFI---IGLP 76
                I   IGLP
Sbjct: 137 APGRLIAAGIGLP 149


>gi|329895297|ref|ZP_08270939.1| UDP-glucose dehydrogenase [gamma proteobacterium IMCC3088]
 gi|328922419|gb|EGG29762.1| UDP-glucose dehydrogenase [gamma proteobacterium IMCC3088]
          Length = 389

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 36  PGRRFAHPRPFLVRKKV---TQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRA 92
           P    A     L   ++    +   E  +    E  +  I+G           +    R 
Sbjct: 121 PVGFTARLNQTLDTDRIVFSPEFLREGQALKDNEYPSRIIVG----------AQTEQARE 170

Query: 93  FVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VDSIAAA 142
           F   +    +KV VP +  D    +  A+ I +  N     R+     +D+ AA 
Sbjct: 171 FAELLQYAAKKVDVPVLLAD----STEAEAIKLFANTYLAMRVAYFNELDTYAAV 221


>gi|91788399|ref|YP_549351.1| RNA-binding S1 [Polaromonas sp. JS666]
 gi|91697624|gb|ABE44453.1| RNA binding S1 [Polaromonas sp. JS666]
          Length = 803

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G+  A+ D   +    A   P   RK    +   
Sbjct: 332 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRKDWDGSLHA 390

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105
           L        +    IG     NG+       T     ++I     V 
Sbjct: 391 LAKLCEKHGVNLIAIG-----NGTAS---RETDKLAADLIKLMAKVE 429


>gi|229816013|ref|ZP_04446334.1| hypothetical protein COLINT_03066 [Collinsella intestinalis DSM
           13280]
 gi|229808327|gb|EEP44108.1| hypothetical protein COLINT_03066 [Collinsella intestinalis DSM
           13280]
          Length = 286

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 23/129 (17%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
            A P   + R    +T   +       +IA  +   P  M+G +  RV + RA V     
Sbjct: 138 IALPL-TIARVPAKETLARVEQVAQRLDIAGVLDKYPYQMSGGQQQRVAAARALV----- 191

Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAALILQEVLD 150
                  +  DE    L + +A ++L++    ++R+ +   +    DS AA        +
Sbjct: 192 --TDPAIILADEPTGALDSKNA-RLLLESIETMNRQYQATVLMVTHDSFAA-----SYTN 243

Query: 151 RISFLESSK 159
           R+ F+   +
Sbjct: 244 RVLFIRDGR 252


>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
          Length = 757

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 15/102 (14%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA 70
           ++ +  ID G  R G  LA  D   RF              V     ELL  I +     
Sbjct: 323 SKRVLGIDPGL-RTGSKLAAVDETGRFLSHCTIYPHTGSSNVEPAKRELLRIIDSNRCEI 381

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDE 111
             +G     NG+ G  +     F    + +  + +P V  +E
Sbjct: 382 IAVG-----NGTAGREMEL---FARQTLTEAGLRLPVVVVNE 415


>gi|319946581|ref|ZP_08020815.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
 gi|319746629|gb|EFV98888.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
          Length = 708

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P       ++     EL   I  
Sbjct: 305 KGRVVLGFDPAF---RTGAKLAVVDQTGKMLTTQVIYPVAPAKATQIEAAKEELKRLIRQ 361

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            ++    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 362 YSVEIIAIG-----NGTAS---RESEAFVAEVLKEVPNVSYVIVNESGASVYSASEL 410


>gi|290580778|ref|YP_003485170.1| hypothetical protein SmuNN2025_1252 [Streptococcus mutans NN2025]
 gi|254997677|dbj|BAH88278.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 708

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q   EL   I  
Sbjct: 305 KGKVVLGFDPAF---RTGAKLAVVDQTGKLIMTQVIYPVPPAGQSKINQAKSELAELIKR 361

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 362 YAIEIIAIG-----NGTAS---RESEAFVAEILKDFPQVSYVLVNESGASVYSASEL 410


>gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
 gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
          Length = 756

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69
           N+ +  +D G  R G  LA  D   RF      +        +     ELL  I +    
Sbjct: 323 NKRVLGVDPGL-RTGSKLAAVDETGRF-LGHCTIYPHTGSGNIEPAKRELLRMIHSHQSE 380

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
              IG     NG+ G  +     FV   + +  + +P V  +E   +V SA  I  +
Sbjct: 381 LVAIG-----NGTAGREMEL---FVRQTLTEAGLRLPVVVVNEAGASVYSASDIARE 429


>gi|77413082|ref|ZP_00789283.1| S1 RNA binding domain protein [Streptococcus agalactiae 515]
 gi|77160875|gb|EAO71985.1| S1 RNA binding domain protein [Streptococcus agalactiae 515]
          Length = 764

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+ +EL   I  
Sbjct: 351 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 407

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 408 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 456


>gi|183603638|ref|ZP_02964444.1| protein tex [Streptococcus pneumoniae CDC3059-06]
 gi|183575709|gb|EDT96237.1| protein tex [Streptococcus pneumoniae CDC3059-06]
          Length = 805

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 397 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 452

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 453 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 504

Query: 120 QIL 122
             L
Sbjct: 505 SEL 507


>gi|157412608|ref|YP_001483474.1| hypothetical protein P9215_02711 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387183|gb|ABV49888.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9215]
          Length = 145

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 42/149 (28%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLS-----FITTENIA 69
            + +ID G  + GL               +  KKV +  +   ELL       IT E+I+
Sbjct: 3   KVITIDPGKSKCGL-----------VLAEISEKKVYEAIILKSELLENYVSYLITAEDIS 51

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
             IIG     NG+    +     F             V +DE+ TT  A+    ++   R
Sbjct: 52  QIIIG-----NGTSSREIREKLYFFKK--------EIVTFDEKNTTYRAKARYFELFPIR 98

Query: 130 KKR----------IQKVDSIAAALILQEV 148
             +           + +D+I+A +IL++ 
Sbjct: 99  GLKFLIPREVFILNKNLDAISALIILEDY 127


>gi|124024147|ref|YP_001018454.1| hypothetical protein P9303_24581 [Prochlorococcus marinus str. MIT
           9303]
 gi|123964433|gb|ABM79189.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9303]
          Length = 152

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 35/146 (23%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN----IAAFII 73
            + ++D G  + GL         A      V +     A  +L  I        +   +I
Sbjct: 12  KLVAVDPGRNKCGL-------VLADTATSAVLEGKVVAAAAVLDLIMHWQNQAPLEGILI 64

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSR 129
           G     NG+          +  N++     +     +ER +T+ A+    +     N  R
Sbjct: 65  G-----NGTSSE-------YWQNLLLHIAPLHV--VEERGSTLRARHRYWELWPPSNWRR 110

Query: 130 KKRIQKV------DSIAAALILQEVL 149
                 +      D+IAA ++L++ L
Sbjct: 111 WLPRGMILPPHHLDAIAAMVLLEDHL 136


>gi|77409101|ref|ZP_00785816.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1]
 gi|77172279|gb|EAO75433.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1]
          Length = 764

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+ +EL   I  
Sbjct: 351 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 407

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 408 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 456


>gi|77406413|ref|ZP_00783472.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B]
 gi|77174977|gb|EAO77787.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B]
          Length = 640

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+ +EL   I  
Sbjct: 326 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 382

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 383 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 431


>gi|319744762|gb|EFV97103.1| YhgF like protein [Streptococcus agalactiae ATCC 13813]
          Length = 747

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+ +EL   I  
Sbjct: 334 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 390

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 391 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 439


>gi|76798194|ref|ZP_00780445.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21]
 gi|77410770|ref|ZP_00787128.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111]
 gi|76586457|gb|EAO62964.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21]
 gi|77163149|gb|EAO74102.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111]
          Length = 747

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+ +EL   I  
Sbjct: 334 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 390

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 391 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 439


>gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira
           defluvii]
 gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira
           defluvii]
          Length = 799

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + +L+ +     + +  +D G  R G  +A+ D   +    A   P   R         
Sbjct: 333 NLHELLLAAPAGPKAVLGLDPGL-RTGCKVAVVDATGKLLDTATIYPHQPRNDWQGALAT 391

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           ++  +    +    IG     NG+       T  F   ++ 
Sbjct: 392 IVQLVLRHGVELISIG-----NGTAS---RETDKFAAEVVK 424


>gi|307944634|ref|ZP_07659974.1| protein YhgF [Roseibium sp. TrichSKD4]
 gi|307772383|gb|EFO31604.1| protein YhgF [Roseibium sp. TrichSKD4]
          Length = 810

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     +    +D G  R G+  A+ D   +    A   PF  R  V+ +   
Sbjct: 332 NLKDLLLAAPAGAKATLGLDPGI-RTGVKVAVVDETGKLIDTATIYPFQPRNDVSGSRAT 390

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
           LL+ I    +    IG     NG+       
Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDK 416


>gi|169833704|ref|YP_001694361.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996206|gb|ACA36818.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 790

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 382 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 437

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 438 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 489

Query: 120 QIL 122
             L
Sbjct: 490 SEL 492


>gi|22536896|ref|NP_687747.1| transcriptional accessory protein Tex [Streptococcus agalactiae
           2603V/R]
 gi|25010809|ref|NP_735204.1| hypothetical protein gbs0754 [Streptococcus agalactiae NEM316]
 gi|76788092|ref|YP_329480.1| S1 RNA-binding domain-containing protein [Streptococcus agalactiae
           A909]
 gi|22533747|gb|AAM99619.1|AE014225_2 transcriptional accessory protein Tex, putative [Streptococcus
           agalactiae 2603V/R]
 gi|23095163|emb|CAD46398.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563149|gb|ABA45733.1| S1 RNA binding domain protein [Streptococcus agalactiae A909]
          Length = 720

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+ +EL   I  
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 412


>gi|238019694|ref|ZP_04600120.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748]
 gi|237863735|gb|EEP65025.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748]
          Length = 175

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 38/144 (26%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV---TQTALELLSFITT-ENIAAFIIG 74
           I ++D G ++ G+A          P   +V +K+    Q   E+   +T    I   + G
Sbjct: 7   ILAVDPGNEKTGVA-------IVTPSGTMVCRKIIMTKQFNDEIERTLTEYYGIVHIVCG 59

Query: 75  LPLNMNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
                NG+      P +            R   +     DE  +T  A+++    N    
Sbjct: 60  -----NGTNHKYLYPSLQQI--------GRNHRITTSLIDESHSTEEARKLYWKYNPPTG 106

Query: 131 KRI----------QKVDSIAAALI 144
            R           + VD + A +I
Sbjct: 107 WRKIIPTSMQFPPEPVDDLTAFVI 130


>gi|172079513|ref|ZP_02932128.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|172043456|gb|EDT51502.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
          Length = 790

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 382 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 437

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 438 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 489

Query: 120 QIL 122
             L
Sbjct: 490 SEL 492


>gi|322389951|ref|ZP_08063491.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           903]
 gi|321143387|gb|EFX38825.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           903]
          Length = 718

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D      A     P       ++ Q   EL S I  
Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKELSSLIKE 371

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420


>gi|307704740|ref|ZP_07641637.1| protein tex [Streptococcus mitis SK597]
 gi|307621719|gb|EFO00759.1| protein tex [Streptococcus mitis SK597]
          Length = 709

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ ++  +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEESKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYDVEIIAIG-----NGTAS---RESEAFVAEVLKEFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|302875853|ref|YP_003844486.1| Tex-like protein-like [Clostridium cellulovorans 743B]
 gi|307689286|ref|ZP_07631732.1| Tex-like protein-like [Clostridium cellulovorans 743B]
 gi|302578710|gb|ADL52722.1| Tex-like protein-like [Clostridium cellulovorans 743B]
          Length = 719

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQTALE----LLSF 62
           L+++    + +   D G  R G  +A+ D   +        V  K  +   E    L   
Sbjct: 303 LMQAPIKGKTVLGFDPGF-RTGCKIAVLDETGKILDTHTAYVTSKGKEGLQEEKAKLKEL 361

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
           I   ++    +G     NG+         A +   +  ++     + 
Sbjct: 362 ILKHDVDVISLG-----NGTASRESEEIIAELLKEVKNEIGKEIYYV 403


>gi|312868311|ref|ZP_07728511.1| Tex-like protein N-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096056|gb|EFQ54300.1| Tex-like protein N-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 718

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D      A     P       ++ Q   EL S I  
Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKELSSLIKE 371

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420


>gi|332703310|ref|ZP_08423398.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553459|gb|EGJ50503.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 710

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 5   LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTAL 57
            + +L+ +    Q  I ++D G  R G  LA  D   R  H    +      K+  +   
Sbjct: 304 NLRELLLASPLGQKRIMALDPGF-RTGAKLACLDAQGRLLH-HETIFPTGSEKQSREAGT 361

Query: 58  ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV- 116
            +        I A  +G     NG+ G     T AFV  +      V  V  +E   +V 
Sbjct: 362 RVRELTARFAIEAVAVG-----NGTAG---RETEAFVRGLA--LPGVAVVMVNESGASVY 411

Query: 117 SAQQILID 124
           SA +I  +
Sbjct: 412 SASEIARE 419


>gi|282855412|ref|ZP_06264733.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter
           piscolens W5455]
 gi|282586708|gb|EFB91955.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter
           piscolens W5455]
          Length = 145

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 20  ASIDLGTKRIGLAI-SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
             ID G ++ G A+    G+  A     +  +K+   AL+                LP  
Sbjct: 3   LGIDPGRQKFGWALAGGEGKLVASG--IVPAEKLEDFALKAARSCKDCEEWRLEGELPE- 59

Query: 79  MNGSE-----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
            +G       G      R FV  +  R          E  TT+ A+++  DM+  R  + 
Sbjct: 60  -DGKIAKVFCGDGTGHAR-FVQALARRFA---VELVGELNTTLEARRLYWDMHPPRGLKR 114

Query: 134 QK----------VDSIAAALILQEVL 149
                       VD +AA  IL+  L
Sbjct: 115 FVPLSLLVPPRCVDDLAAFCILRRAL 140


>gi|306831829|ref|ZP_07464985.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426027|gb|EFM29143.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 710

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+  +L   I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 YGVEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412


>gi|288905732|ref|YP_003430954.1| S1 RNA binding domain protein [Streptococcus gallolyticus UCN34]
 gi|325978764|ref|YP_004288480.1| RNA binding S1 domain-containing protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732458|emb|CBI14030.1| putative S1 RNA binding domain protein [Streptococcus gallolyticus
           UCN34]
 gi|325178692|emb|CBZ48736.1| RNA binding S1 domain protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 710

 Score = 36.8 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+  +L   I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 YGVEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412


>gi|257455894|ref|ZP_05621111.1| protein tex [Enhydrobacter aerosaccus SK60]
 gi|257446640|gb|EEV21666.1| protein tex [Enhydrobacter aerosaccus SK60]
          Length = 849

 Score = 36.8 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGL--AI----------SDPGRRFAHPRPFLVRKKVTQTA 56
           L+ +    + I  +D G +  G+  A+          SD     A   PF    KV +  
Sbjct: 342 LMAAPAGQKTILGVDPGIRH-GVKMAVVDSLGHVAKNSDDSFAIATVYPFAPDNKVDEAK 400

Query: 57  LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYV---PFVFWDE 111
             +   +   ++    IG     NG+      +        N       +   P V  +E
Sbjct: 401 QTIADLLKNHHVNLIAIG-----NGTASRETDALIKEILAENSAQGNGDIKAVPVV-VNE 454

Query: 112 RLTTV-----SAQQILIDMNVSRK 130
              +V      A Q L +++VS +
Sbjct: 455 SGASVYSASELASQELQELDVSIR 478


>gi|329121339|ref|ZP_08249965.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus
           DSM 19965]
 gi|327469748|gb|EGF15214.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus
           DSM 19965]
          Length = 144

 Score = 36.8 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G+++ G+A+          +  +  +++ +    L   I    I    IG    
Sbjct: 2   ILSIDPGSEKTGIAVVKKDGNLVM-KKIIKTERLEEEIKTLTKKIE---ITETAIG---- 53

Query: 79  MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
            NG+   ++          M      +P    DE+ TT   +Q     N  +  +     
Sbjct: 54  -NGTHHKKLEKRIEKLYEEMKKE---IPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109

Query: 134 ------QKVDSIAAALI 144
                 + VD   A +I
Sbjct: 110 GMRTVDKPVDDYVAWVI 126


>gi|319408868|emb|CBI82525.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 155

 Score = 36.8 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           I  +DLGTK  G AIS      A        ++     +  L F
Sbjct: 7  TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50


>gi|124266982|ref|YP_001020986.1| putative transcription accessory protein [Methylibium
           petroleiphilum PM1]
 gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium
           petroleiphilum PM1]
          Length = 793

 Score = 36.8 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 15/106 (14%)

Query: 5   LIEDLVKSLKPNQPI-ASIDLGTKRIGL--AI-SDPGRR--FAHPRPFLVRKKVTQTALE 58
            + DL+ +    + +   +D G  R G+  A+ SD G+    A   P   RK        
Sbjct: 323 NLRDLLLAAPAGKRVVMGLDPGI-RTGVKVAVVSDTGKVLDTATVYPHEPRKDWDGAIHT 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
           L     T  +    IG     NG+       T     ++I R   +
Sbjct: 382 LGRLAATHGVNLIAIG-----NGTAS---RETDKLAADLIKRIQQL 419


>gi|315613267|ref|ZP_07888176.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
 gi|315314502|gb|EFU62545.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
          Length = 727

 Score = 36.8 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 319 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 374

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 375 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAKVLKDFPEVSYVIVNESGASVYSA 426

Query: 120 QIL 122
             L
Sbjct: 427 SEL 429


>gi|306829611|ref|ZP_07462801.1| YhgF like protein [Streptococcus mitis ATCC 6249]
 gi|304428697|gb|EFM31787.1| YhgF like protein [Streptococcus mitis ATCC 6249]
          Length = 709

 Score = 36.8 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEILKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|322376679|ref|ZP_08051172.1| S1 RNA binding domain protein [Streptococcus sp. M334]
 gi|321282486|gb|EFX59493.1| S1 RNA binding domain protein [Streptococcus sp. M334]
          Length = 718

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 310 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 365

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 366 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 417

Query: 120 QIL 122
             L
Sbjct: 418 SEL 420


>gi|309800173|ref|ZP_07694359.1| toxin expression - transcriptional accessory protein [Streptococcus
           infantis SK1302]
 gi|308116220|gb|EFO53710.1| toxin expression - transcriptional accessory protein [Streptococcus
           infantis SK1302]
          Length = 686

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 290 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 345

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 346 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 397

Query: 120 QIL 122
             L
Sbjct: 398 SEL 400


>gi|319408082|emb|CBI81735.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 155

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
           I  +DLGTK  G AIS      A        ++     +  L F
Sbjct: 7  TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50


>gi|254501681|ref|ZP_05113832.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437752|gb|EEE44431.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 809

 Score = 36.8 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     +    +D G  R G+  A+ D   +    A   PF  R  +  +   
Sbjct: 332 NLKDLLLAAPAGSKATLGLDPGI-RTGVKVAVVDETGKLIDTATIYPFQPRNDLAGSRNT 390

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
           LL+ I    +    IG     NG+       
Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDK 416


>gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
 gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
          Length = 763

 Score = 36.8 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQ---TALE 58
            + +L+ +     +   +ID G  R G  + + DP  +F   +     + V Q       
Sbjct: 308 NLRELLLAAPAGMKSTLAIDPGF-RTGCKVVVLDPTGKFLEYQTIFPHQSVEQRQKAGQT 366

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-VFWDE 111
           LL  I    +    +G     NG+ G     T  FV  ++      P  V  +E
Sbjct: 367 LLKLIDRYQVELIAVG-----NGTAG---RETDEFVAELLQTLEPKPVKVMVNE 412


>gi|15902852|ref|NP_358402.1| toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae R6]
 gi|149002452|ref|ZP_01827386.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|15458408|gb|AAK99612.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae R6]
 gi|147759389|gb|EDK66381.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 715

 Score = 36.8 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 307 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 362

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 363 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 414

Query: 120 QIL 122
             L
Sbjct: 415 SEL 417


>gi|221231683|ref|YP_002510835.1| transcription accessory protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220674143|emb|CAR68663.1| putative transcription accessory protein [Streptococcus pneumoniae
           ATCC 700669]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|194398593|ref|YP_002037544.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
 gi|194358260|gb|ACF56708.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|332204911|gb|EGJ18976.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47901]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain)
           [Burkholderia rhizoxinica HKI 454]
          Length = 801

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 19/108 (17%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTA 56
            ++DL+ +     + +  +D G  R G  +A+ D      A     P     R+    + 
Sbjct: 340 NLKDLLLAAPAGPRAVIGLDPGL-RTGVKVAVVDRTGKLLATDTIYPHE--PRRDWDGSL 396

Query: 57  LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
             L             IG     NG+       T      +I R   +
Sbjct: 397 ARLARLAQATQAELISIG-----NGTAS---RETDKLASELIARHPEL 436


>gi|225858705|ref|YP_002740215.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
 gi|225720875|gb|ACO16729.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|182683855|ref|YP_001835602.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|307127540|ref|YP_003879571.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
 gi|182629189|gb|ACB90137.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|306484602|gb|ADM91471.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
          Length = 715

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 307 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 362

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 363 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 414

Query: 120 QIL 122
             L
Sbjct: 415 SEL 417


>gi|148992962|ref|ZP_01822581.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|168490278|ref|ZP_02714477.1| protein tex [Streptococcus pneumoniae SP195]
 gi|147928414|gb|EDK79430.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183571410|gb|EDT91938.1| protein tex [Streptococcus pneumoniae SP195]
 gi|332073238|gb|EGI83717.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17570]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|148984645|ref|ZP_01817913.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|149010452|ref|ZP_01831823.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168490996|ref|ZP_02715139.1| protein tex [Streptococcus pneumoniae CDC0288-04]
 gi|225861200|ref|YP_002742709.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229397|ref|ZP_06963078.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255859|ref|ZP_06979445.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503083|ref|YP_003725023.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147764933|gb|EDK71862.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923036|gb|EDK74151.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|183574580|gb|EDT95108.1| protein tex [Streptococcus pneumoniae CDC0288-04]
 gi|225727709|gb|ACO23560.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238678|gb|ADI69809.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799893|emb|CBW32471.1| putative transcription accessory protein [Streptococcus pneumoniae
           OXC141]
 gi|327389190|gb|EGE87535.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04375]
 gi|332202763|gb|EGJ16832.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41317]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|148997004|ref|ZP_01824658.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575569|ref|ZP_02721505.1| protein tex [Streptococcus pneumoniae MLV-016]
 gi|307067562|ref|YP_003876528.1| transcriptional accessory protein [Streptococcus pneumoniae AP200]
 gi|147756704|gb|EDK63744.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578556|gb|EDT99084.1| protein tex [Streptococcus pneumoniae MLV-016]
 gi|306409099|gb|ADM84526.1| Transcriptional accessory protein [Streptococcus pneumoniae AP200]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|322375346|ref|ZP_08049859.1| S1 RNA binding domain protein [Streptococcus sp. C300]
 gi|321279609|gb|EFX56649.1| S1 RNA binding domain protein [Streptococcus sp. C300]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|328542586|ref|YP_004302695.1| cytochrome c oxidase, subunit I [polymorphum gilvum SL003B-26A1]
 gi|326412332|gb|ADZ69395.1| Cytochrome c oxidase, subunit I [Polymorphum gilvum SL003B-26A1]
          Length = 803

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            ++DL+ +     +    +D G  R G+  A+ D   +    A   PF  R  V  +   
Sbjct: 332 NLKDLLLAAPAGARATLGLDPGI-RTGVKVAVVDATGKLVDTATIYPFQPRNDVAGSRAT 390

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
           LL+ I    +    IG     NG+       
Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDR 416


>gi|237820844|ref|ZP_04596689.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 725

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 317 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 372

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 373 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 424

Query: 120 QIL 122
             L
Sbjct: 425 SEL 427


>gi|149007144|ref|ZP_01830808.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
 gi|147761182|gb|EDK68149.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
          Length = 709

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|183603130|ref|ZP_02964306.1| protein tex [Streptococcus pneumoniae CDC1087-00]
 gi|183570991|gb|EDT91519.1| protein tex [Streptococcus pneumoniae CDC1087-00]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|332075520|gb|EGI85988.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17545]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|307708663|ref|ZP_07645126.1| toxin expression - transcriptional accessory protein [Streptococcus
           mitis NCTC 12261]
 gi|307615237|gb|EFN94447.1| toxin expression - transcriptional accessory protein [Streptococcus
           mitis NCTC 12261]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|116516081|ref|YP_816286.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
           D39]
 gi|148988340|ref|ZP_01819787.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
 gi|225856571|ref|YP_002738082.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
 gi|237649296|ref|ZP_04523548.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI 1974]
 gi|116076657|gb|ABJ54377.1| S1 RNA binding domain [Streptococcus pneumoniae D39]
 gi|147926021|gb|EDK77095.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
 gi|225725987|gb|ACO21839.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
 gi|332076190|gb|EGI86656.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41301]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|301794055|emb|CBW36456.1| putative transcription accessory protein [Streptococcus pneumoniae
           INV104]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|289167924|ref|YP_003446193.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288907491|emb|CBJ22328.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|225854413|ref|YP_002735925.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
 gi|225723646|gb|ACO19499.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|149019492|ref|ZP_01834811.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
 gi|147930867|gb|EDK81847.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|15900789|ref|NP_345393.1| transcriptional regulator, putative [Streptococcus pneumoniae
           TIGR4]
 gi|111657235|ref|ZP_01408005.1| hypothetical protein SpneT_02001548 [Streptococcus pneumoniae
           TIGR4]
 gi|303254587|ref|ZP_07340690.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS455]
 gi|303259816|ref|ZP_07345791.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262231|ref|ZP_07348175.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264652|ref|ZP_07350570.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS397]
 gi|303267582|ref|ZP_07353426.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS457]
 gi|303269819|ref|ZP_07355566.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS458]
 gi|14972382|gb|AAK75033.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4]
 gi|301801754|emb|CBW34464.1| putative transcription accessory protein [Streptococcus pneumoniae
           INV200]
 gi|302598439|gb|EFL65482.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS455]
 gi|302636554|gb|EFL67045.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639021|gb|EFL69481.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302640646|gb|EFL71046.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS458]
 gi|302642880|gb|EFL73183.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS457]
 gi|302645739|gb|EFL75968.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS397]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 788

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L   +    +    IG     NG+       T     +++ 
Sbjct: 382 LARLVQKHGVQLVAIG-----NGTAS---RETDKLAADLLK 414


>gi|307709284|ref|ZP_07645742.1| protein tex [Streptococcus mitis SK564]
 gi|307619867|gb|EFN98985.1| protein tex [Streptococcus mitis SK564]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli
           AAC00-1]
 gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1]
          Length = 788

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L   +    +    IG     NG+       T     +++ 
Sbjct: 382 LARLVQKHGVQLVAIG-----NGTAS---RETDKLAADLLK 414


>gi|332201372|gb|EGJ15442.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|296876119|ref|ZP_06900173.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296432830|gb|EFH18623.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 718

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D      A     P       ++ Q   +L S I  
Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKDLSSLIKE 371

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420


>gi|121533952|ref|ZP_01665778.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307463|gb|EAX48379.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
          Length = 723

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 22/125 (17%)

Query: 16  NQPIASIDLGTKRIGL--A-ISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAA 70
              +  +D G  R G   A +S  G   A    +L        +   E L+ I +  +  
Sbjct: 317 GHTVMGLDPG-YRTGCKMAVVSPTGTVLATGTLYLTHSDAQRERAVKEALATIESYGVTL 375

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-----SAQQILI 123
             IG     NG+          FV  +I+    +P  +   +E   +V      A+  L 
Sbjct: 376 IAIG-----NGTASYETE---EFVARLINDH-QLPIHYLIVNEAGASVYSASKLAKDELP 426

Query: 124 DMNVS 128
           D++VS
Sbjct: 427 DLDVS 431


>gi|118364982|ref|XP_001015712.1| hypothetical protein TTHERM_00077710 [Tetrahymena thermophila]
 gi|89297479|gb|EAR95467.1| hypothetical protein TTHERM_00077710 [Tetrahymena thermophila
           SB210]
          Length = 533

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 30/114 (26%)

Query: 44  RPFLVRKKVTQTA------LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
              +      +T        +L   I  EN+   +IG                  F   +
Sbjct: 2   LETIETAGDARTFNNPIVIAKLKKHIQKENVKGLVIG---------------ATNF-KRL 45

Query: 98  IDRKVYVPFVFWDERLTTVSAQQILID------MNVSRKKRIQKVDSIAAALIL 145
           +   +Y      DE  TT +++QIL +       N++ K+     D  A++L+L
Sbjct: 46  LINLIYQNIKKVDESFTTFASKQILEEIAFNYNENLNLKQHKDLKD--ASSLLL 97


>gi|77164807|ref|YP_343332.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
 gi|254434282|ref|ZP_05047790.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
 gi|76883121|gb|ABA57802.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
 gi|207090615|gb|EDZ67886.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
          Length = 765

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 17  QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +PI  +D G  R G  +A+ D   +    A   P   +K+       L S +    +   
Sbjct: 322 RPILGLDPGF-RTGVKVAVIDETGKLLETATIYPHPPQKQWDAAIDILSSLLKKHRVELV 380

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
            IG     NG+       T   V  ++ +   
Sbjct: 381 GIG-----NGTAS---RETEQLVVELLKKFPQ 404


>gi|306825121|ref|ZP_07458463.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432557|gb|EFM35531.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 709

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|331266273|ref|YP_004325903.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
 gi|326682945|emb|CBZ00562.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
          Length = 732

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 324 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 379

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 380 SDLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 431

Query: 120 QIL 122
             L
Sbjct: 432 SEL 434


>gi|306833951|ref|ZP_07467075.1| YhgF like protein [Streptococcus bovis ATCC 700338]
 gi|304423952|gb|EFM27094.1| YhgF like protein [Streptococcus bovis ATCC 700338]
          Length = 708

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+  +L   I T
Sbjct: 305 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 361

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV   +     V +V  +E   +V +   L
Sbjct: 362 YGVEIIAIG-----NGTAS---RESEAFVAQALKDFPDVSYVIVNESGASVYSASEL 410


>gi|163867791|ref|YP_001608995.1| hypothetical protein Btr_0550 [Bartonella tribocorum CIP 105476]
 gi|161017442|emb|CAK01000.1| phage-related conserved hypothetical protein [Bartonella
          tribocorum CIP 105476]
          Length = 159

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
          Q I  +DLGTK  G A+ D              ++     +  L F  
Sbjct: 6  QTILCLDLGTKT-GWALCDADGFITSDTEHFQSRRFEGGGMRYLRFKK 52


>gi|225181236|ref|ZP_03734681.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168016|gb|EEG76822.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 713

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69
           P + I  +D G  R G  LA  D   +    A   P     K   +A  +   I   ++ 
Sbjct: 314 PGKRILGLDPG-YRTGCKLACVDQTGKLLETAVIYPTPPLNKKEASAAVVKKLIEKHDLN 372

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQIL 122
              IG     NG+ G     +  F+  +I      + +   +E   +V +   L
Sbjct: 373 TVAIG-----NGTAG---RESEEFIAEVISEMNREIEYTVVNEAGASVYSASKL 418


>gi|139438397|ref|ZP_01771913.1| Hypothetical protein COLAER_00903 [Collinsella aerofaciens ATCC
           25986]
 gi|133775936|gb|EBA39756.1| Hypothetical protein COLAER_00903 [Collinsella aerofaciens ATCC
           25986]
          Length = 261

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
            A P   + R    + +  +       +I+  +   P  M+G +  RV + RA V     
Sbjct: 113 IALPL-TIARTNSAEISTRVQDVAARLSISQVLDKYPYQMSGGQQQRVAAARALV----- 166

Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAAL 143
                  +  DE    L + SA ++L++    ++R+ R   +    DS AA+ 
Sbjct: 167 --TDPTMIMADEPTGALDSKSA-RLLLESLEALNRRLRATVLMVTHDSFAASY 216


>gi|310778062|ref|YP_003966395.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926]
 gi|309747385|gb|ADO82047.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926]
          Length = 356

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 40  FAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
            A+      R K  + +   ++L  +  ++ A  +   P  M+G +  RV   RA + N 
Sbjct: 103 IAYGLKVQKRPKAEINERVEKILKLMKMDDFATRV---PSQMSGGQQQRVSLARALIMNS 159

Query: 98  IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
                    + +DE L+ + A+  L   +  RK + + 
Sbjct: 160 G-------VLLFDEPLSNLDAKLRLHMRDEIRKLQKEV 190


>gi|314934887|ref|ZP_07842246.1| nickel ABC transporter, periplasmic nickel-binding protein
           [Staphylococcus caprae C87]
 gi|313652817|gb|EFS16580.1| nickel ABC transporter, periplasmic nickel-binding protein
           [Staphylococcus caprae C87]
          Length = 532

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 30/104 (28%)

Query: 32  AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
           A+SD   R A     + R K++Q                        ++G E P      
Sbjct: 292 AVSDKTVRQALGY-MVNRDKISQDI----------------------LDGQEKPATQL-- 326

Query: 92  AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
            F  N+ D    +P   +D    T  A+ +L +      K    
Sbjct: 327 -FAKNVTDINFNMPTRQFD----TKKAEALLDEAGWKLTKEKNV 365


>gi|323697522|ref|ZP_08109434.1| ABC transporter related protein [Desulfovibrio sp. ND132]
 gi|323457454|gb|EGB13319.1| ABC transporter related protein [Desulfovibrio desulfuricans ND132]
          Length = 373

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
            A P   + ++        +     T  I   +  LP  M+G E  RV   RA +     
Sbjct: 105 IASPL-VIRKESGEVIRERVEGIAKTLQITHVLGRLPKTMSGGEKQRVALGRALI----- 158

Query: 100 RKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQ 134
           R   +     DE L+++ A+ +I +   + R +R Q
Sbjct: 159 RTPQL--FLLDEPLSSLDAKLRIELRAELRRMQREQ 192


>gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 787

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 19/108 (17%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AH----PRPFLVRKKVTQTA 56
            ++DL+ +     + +  +D G  R G  +A+ D   +  A     P     R++  Q+ 
Sbjct: 318 NLKDLLLAAPAGPKAVLGLDPGL-RTGVKVAVVDATGKLVATDTIYPHE--PRRQWDQSL 374

Query: 57  LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
             L     T  +    IG     NG+       T     +++     +
Sbjct: 375 ASLRKLCITHGVQLVAIG-----NGTAS---RETDKLAGDLLKLVPEL 414


>gi|320547221|ref|ZP_08041514.1| YhgF like protein [Streptococcus equinus ATCC 9812]
 gi|320448109|gb|EFW88859.1| YhgF like protein [Streptococcus equinus ATCC 9812]
          Length = 710

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+ Q+  +L   I +
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRS 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 YGIEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412


>gi|89901260|ref|YP_523731.1| RNA-binding S1 [Rhodoferax ferrireducens T118]
 gi|89345997|gb|ABD70200.1| RNA binding S1 [Rhodoferax ferrireducens T118]
          Length = 807

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G+  A+ D   +    A   P   RK    +   
Sbjct: 340 NLRDLLLAAPAGPRVVLGLDPGI-RTGVKVAVVDATGKLVDTATVYPHEPRKDWDGSLHI 398

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWD 110
           L        ++   IG     NG+       T     ++I           D
Sbjct: 399 LARLCEKHGVSLIAIG-----NGTAS---RETDKLAADLIKLMAKSSERLMD 442


>gi|297185087|gb|ADI21196.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
          Length = 157

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 19  IASIDLGTKR-IGLAISDPGRRFAHPRPFL 47
           I + D   KR IG+A+       A P   L
Sbjct: 123 ILAFDXXXKRRIGVAVGQDITNSASPLGTL 152


>gi|270292646|ref|ZP_06198857.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
 gi|270278625|gb|EFA24471.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
          Length = 709

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASSRQIEEAKRDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|255022353|ref|ZP_05294339.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
           J1-208]
          Length = 1010

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 31  LAISDPGRRFA---HPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG---LPLNM 79
           LAI+   R  A    P   +     T+     T+ E+   I  E     + G   +P   
Sbjct: 24  LAITAEERMIAREVTPEKSVENTDNTKGEAETTSEEVEPIIKEETPEEIVEGKVEVPTTG 83

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
            G     +   +  +  +     Y    F DE L+ + A+      +V++K     +D +
Sbjct: 84  GGMASKNLKQMK--ITELQQESTYATV-FPDEALSPIIAKAATGSDDVTQKVTQTALDKV 140


>gi|210630872|ref|ZP_03296646.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
 gi|210160306|gb|EEA91277.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
          Length = 835

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
               + ++D G  R G  +A+ D   +        P   R+ V  T  ELL       I 
Sbjct: 429 RGARVIALDPG-YRAGCKVAVLDEYGKLLDHTILYPTPPRRDVAGTKRELLRLTRKHRIN 487

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             ++G     NG+              + +    + +   +E   +V +   L
Sbjct: 488 TIVVG-----NGTASRETEEV--VAAFIAESAPELRYTIVNEAGASVYSASKL 533


>gi|322387834|ref|ZP_08061442.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
 gi|321141336|gb|EFX36833.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
          Length = 709

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + +FV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESESFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|241864906|gb|ACS68536.1| low-specificity threonine aldolase [uncultured bacterium FLS18]
          Length = 407

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5   LIEDLVKSLKPN----QPIASIDLGTKRIGLAISDPGRRFAH 42
            I+D  ++ K      + I  +D GTKR G+A+  P    A 
Sbjct: 155 TIDDFNEAAKAAGIELRVILDLDTGTKRTGIAVGKPALALAQ 196


>gi|116515277|ref|YP_802906.1| YggF [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285327|sp|Q056Y6|RUVX_BUCCC RecName: Full=Putative Holliday junction resolvase
 gi|116257131|gb|ABJ90813.1| putative Holliday jonction resolvase [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 130

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 42  HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101
            P   +   K      ++   I        +IG P         +++         I +K
Sbjct: 26  TPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYK----IKKKINKKIKKFAKEIKKK 81

Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
             + F   DE  +T  A   L +    +K     + SI+A +IL   +
Sbjct: 82  FKINFFLCDENYSTTEALLFLKEKKKKKKYC---LHSISAKIILDSWI 126


>gi|312865889|ref|ZP_07726110.1| Tex-like protein N-terminal domain protein [Streptococcus downei
           F0415]
 gi|311098293|gb|EFQ56516.1| Tex-like protein N-terminal domain protein [Streptococcus downei
           F0415]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P     + K+ ++  EL   + T
Sbjct: 307 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTHVIYPVAPASQAKIVKSKEELAELLRT 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV +++     V +V  +E   +V +   L
Sbjct: 364 YQVEIIAIG-----NGTAS---RESEAFVADILKDFPEVSYVIVNESGASVYSASEL 412


>gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42]
 gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42]
          Length = 798

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T      +I 
Sbjct: 389 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 421


>gi|312879272|ref|ZP_07739072.1| ferredoxin [Aminomonas paucivorans DSM 12260]
 gi|310782563|gb|EFQ22961.1| ferredoxin [Aminomonas paucivorans DSM 12260]
          Length = 248

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 14/53 (26%)

Query: 76  PLNMNG----SEGPRVHSTRAFVHNMIDRKVYV-PFVFW---------DERLT 114
           P+N +G    ++ PRV   R FV  ++ R+  + P +           DERL+
Sbjct: 67  PVNEDGLEVLTDSPRVREARRFVIRLLLRRNALSPVIQQLAREEGVEPDERLS 119


>gi|269123065|ref|YP_003305642.1| spermidine/putrescine ABC transporter ATPase subunit
           [Streptobacillus moniliformis DSM 12112]
 gi|268314391|gb|ACZ00765.1| spermidine/putrescine ABC transporter ATPase subunit
           [Streptobacillus moniliformis DSM 12112]
          Length = 354

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 40  FAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
            A+      R  +++ Q   ++L  +  E+ A  I   P  M+G +  RV   RA +   
Sbjct: 103 IAYGLKIQKRPKEEIKQRVDKILKLMKMEDFAERI---PSQMSGGQQQRVSLARALI--- 156

Query: 98  IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
               +    + +DE L+ + A+  L   +  RK +++ 
Sbjct: 157 ----MDSEVLLFDEPLSNLDAKLRLHMRDEIRKLQLEV 190


>gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter sulfurreducens KN400]
          Length = 761

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69
            + +  +D G  R G  LA  D   RF              KV     E L  +    I 
Sbjct: 323 GKRVLGVDPGL-RTGSKLAAVDGTGRFLEHVTIYPHAGGEGKVAAAKREFLRLVECHGIE 381

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
              +G     NG+ G  +     F    + +    +P V   E   +V SA +I  +
Sbjct: 382 MVAVG-----NGTAGREMEQ---FAKETLAEGGKRIPVVMVSEAGASVYSASEIARE 430


>gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY]
          Length = 798

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T      +I 
Sbjct: 389 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 421


>gi|297624691|ref|YP_003706125.1| hypothetical protein Trad_2474 [Truepera radiovictrix DSM 17093]
 gi|297165871|gb|ADI15582.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
          Length = 130

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 23/103 (22%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I ++D G + IG+A  +P  R       ++      T  +L + +        ++G    
Sbjct: 2   IVALDPG-RNIGVAFVNPLGRLV--YRTII------TLGDLETLLIPAG-TTVVVG---- 47

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
            +G+    V         +        F   DE  T++ A+ +
Sbjct: 48  -DGTGSEAVQRVLR-ARALS-------FALVDETGTSLEARAL 81


>gi|293365555|ref|ZP_06612264.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307703510|ref|ZP_07640452.1| protein tex [Streptococcus oralis ATCC 35037]
 gi|291315923|gb|EFE56367.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307622917|gb|EFO01912.1| protein tex [Streptococcus oralis ATCC 35037]
          Length = 709

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I   ++    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 SDLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|329851206|ref|ZP_08265963.1| hypothetical protein ABI_40470 [Asticcacaulis biprosthecum C19]
 gi|328840052|gb|EGF89624.1| hypothetical protein ABI_40470 [Asticcacaulis biprosthecum C19]
          Length = 357

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 81  GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
           G+   R+ +  A    +  R+   P +FWDE  +   A++ L    +
Sbjct: 177 GTGKTRIDACLAMSRQLQKRENNPPVIFWDEGWSPYEARKFLEAEGL 223


>gi|305663114|ref|YP_003859402.1| carbohydrate ABC transporter ATP-binding protein, CUT1 family
           [Ignisphaera aggregans DSM 17230]
 gi|304377683|gb|ADM27522.1| carbohydrate ABC transporter ATP-binding protein, CUT1 family
           [Ignisphaera aggregans DSM 17230]
          Length = 367

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 11/98 (11%)

Query: 40  FAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
            A P     R+      +    ++       I   +   P  ++G E  RV   RA V  
Sbjct: 96  IAFPLIARKRQLKISDDEIRKRVVEVANMLGIEHLLNRKPSQLSGGEQQRVALARALVRQ 155

Query: 97  MIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133
                        DE L+ + A+ ++L+   + R ++ 
Sbjct: 156 -------PKVFLMDEPLSNLDAKLRLLMRAELKRLQKK 186


>gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA]
          Length = 761

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69
            + +  +D G  R G  LA  D   RF              KV     E L  +    I 
Sbjct: 323 GKRVLGVDPGL-RTGSKLAAVDGTGRFLEHVTIYPHAGGEGKVAAAKREFLRLVECHGIE 381

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
              +G     NG+ G  +     F    + +    +P V   E   +V SA +I  +
Sbjct: 382 MVAVG-----NGTAGREMEQ---FAKETLAEGGKRIPVVMVSEAGASVYSASEIARE 430


>gi|308178439|ref|YP_003917845.1| transcriptional accessory protein [Arthrobacter arilaitensis Re117]
 gi|307745902|emb|CBT76874.1| putative transcriptional accessory protein [Arthrobacter
           arilaitensis Re117]
          Length = 809

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 21/132 (15%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFI 63
           L+ +   N+ +  +D G  R G  +A+ D   +    A   P     K  ++   L+   
Sbjct: 340 LLAAPAGNKAVLGLDPGL-RTGVKVAVVDLTGKSVETATIYPHAPANKWNESLAVLIKLA 398

Query: 64  TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTV----- 116
                +   +G     NG+ G     T      +I          V   E   +V     
Sbjct: 399 KKHGTSLIAVG-----NGTAG---RETDRLAAEVIKELGGAGVDRVIVSEAGASVYSASE 450

Query: 117 SAQQILIDMNVS 128
            A Q L DM+VS
Sbjct: 451 LASQELPDMDVS 462


>gi|307706709|ref|ZP_07643514.1| protein tex [Streptococcus mitis SK321]
 gi|307617794|gb|EFN96956.1| protein tex [Streptococcus mitis SK321]
          Length = 709

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +   +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADSIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKEFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|262282625|ref|ZP_06060393.1| S1 RNA binding domain-containing protein [Streptococcus sp.
           2_1_36FAA]
 gi|262261916|gb|EEY80614.1| S1 RNA binding domain-containing protein [Streptococcus sp.
           2_1_36FAA]
          Length = 710

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKSAQIEASKKELSELIEE 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++    +V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPHVSYVIVNESGASVYSASEL 412


>gi|310796681|gb|EFQ32142.1| CPSF A subunit region [Glomerella graminicola M1.001]
          Length = 1163

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 31  LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
           +A S   R  A     + R+      +   SF   + I   ++G P +++GS        
Sbjct: 771 VAYSPALR--AFGIGTIHRELTNNEEVVTSSFQLVDEIVLGVVGKPFHLDGSIS--AEMV 826

Query: 91  RAFVHNMIDRKVYVPFVFWDERL---TTVSAQQILIDMNVSRKK 131
            + +   +   +  P     ER    T+  A   + +   ++ +
Sbjct: 827 ESVIRAELPDSMGQPA----ERFIVGTSYLADPDIDESGDTKGR 866


>gi|156375168|ref|XP_001629954.1| predicted protein [Nematostella vectensis]
 gi|156216965|gb|EDO37891.1| predicted protein [Nematostella vectensis]
          Length = 501

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 33  ISDPGRRFAHPRPFLVRKKVTQTALEL-LSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
           I DP    A   P +  +   +  LE+       E +   ++     M     P   + R
Sbjct: 233 IGDPLDIIASG-PTVPDQSNPRDCLEIFRKLKAEEKVPKSVMQYLQGMADQPKPESQNNR 291

Query: 92  AFVH 95
            F +
Sbjct: 292 EFAN 295


>gi|295394635|ref|ZP_06804854.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972528|gb|EFG48384.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 740

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
            +  VP    DER +TV A++ + +   S +     VD  A
Sbjct: 379 HRFDVP--GVDERFSTVRARRAVDNSGASIRLDAAYVDEAA 417


>gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
 gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
          Length = 762

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
            + +  ID G  R G  LA  D   RF       P     +V Q   +LL  +    I  
Sbjct: 323 GRRVLGIDPGL-RAGSKLAAVDQTGRFLEHVTIYPHTGAGRVDQARADLLRLVEAHGIEM 381

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDE 111
             IG     NG+ G  +         +     ++P V   E
Sbjct: 382 IAIG-----NGTAGREMELFTK--ETLAKAGKHLPVVMVSE 415


>gi|210620543|ref|ZP_03292091.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
 gi|210155257|gb|EEA86263.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
          Length = 712

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
            + +   D G  R G  +A+ D   +F   A       + K ++   EL+  I   NI  
Sbjct: 311 GKNVMGFDPGI-RTGCKIAVVDRNGKFLDSAVVFVTGSQAKKSEAEKELIGLIKKHNIDI 369

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILID 124
             IG     NG+       + AFV  MI    + V +V   E   +V +   L  
Sbjct: 370 IAIG-----NGTAS---RESEAFVAKMIKDNNLDVKYVIVSEAGASVYSASELAA 416


>gi|218767283|ref|YP_002341795.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
           meningitidis Z2491]
 gi|121051291|emb|CAM07567.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
           meningitidis Z2491]
 gi|319409548|emb|CBY89835.1| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
           [Neisseria meningitidis WUE 2594]
          Length = 423

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)

Query: 26  TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
            KRIG   +A+                 +    A +LL+        A ++ +P +    
Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268

Query: 83  EGPRV--HSTRAFVHNMIDRKVYVPFV 107
           E  +    + + F   +  R   +P  
Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295


>gi|325129177|gb|EGC52022.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
           meningitidis N1568]
          Length = 423

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)

Query: 26  TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
            KRIG   +A+                 +    A +LL+        A ++ +P +    
Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268

Query: 83  EGPRV--HSTRAFVHNMIDRKVYVPFV 107
           E  +    + + F   +  R   +P  
Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295


>gi|157738220|ref|YP_001490904.1| S1 RNA-binding domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157700074|gb|ABV68234.1| S1 RNA binding domain protein [Arcobacter butzleri RM4018]
          Length = 702

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           NQ I  +D G K  G  LA+ D        A   P   ++ +  ++  +L  I    I  
Sbjct: 315 NQMILGMDPGYKT-GCKLAVIDENGLYLDSAVIYPTKPKEDIVSSSKVVLDLIKKYKITT 373

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
             IG     NG+       T  F++ +I +
Sbjct: 374 IAIG-----NGTAS---RETANFINELIKQ 395


>gi|313892334|ref|ZP_07825926.1| conserved hypothetical protein [Dialister microaerophilus UPII
           345-E]
 gi|313119193|gb|EFR42393.1| conserved hypothetical protein [Dialister microaerophilus UPII
           345-E]
          Length = 144

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 23/137 (16%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I SID G+++ G+A+          +  +  + + +   E+        I    IG    
Sbjct: 2   ILSIDPGSEKTGIAVVKKDGNLVM-KKIIKTECLEE---EIKILSKKFEIIETAIG---- 53

Query: 79  MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
            NG+    +          M      +P    DE+ TT   +Q     N  +  +     
Sbjct: 54  -NGTHHKNLEKRIEKLYEEMKKE---IPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109

Query: 134 ------QKVDSIAAALI 144
                 + VD   A +I
Sbjct: 110 GMRTVDKPVDDYVAWVI 126


>gi|194366186|ref|YP_002028796.1| RNA binding S1 domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348990|gb|ACF52113.1| RNA binding S1 domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 795

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AHPRPFL----VRKKVTQTA 56
            ++DL+ +     + +  +D G  R G  +A+ D   +  A     +     R++  Q+ 
Sbjct: 321 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVVDATGKLVAT--ETIYPHEPRRQWEQSL 377

Query: 57  LELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
             +       N+    IG     NG+       
Sbjct: 378 QTIKQLCAKHNVELIAIG-----NGTASRETDK 405


>gi|308388240|gb|ADO30560.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
           meningitidis alpha710]
          Length = 423

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)

Query: 26  TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
            KRIG   +A+                 +    A +LL+        A ++ +P +    
Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268

Query: 83  EGPRV--HSTRAFVHNMIDRKVYVPFV 107
           E  +    + + F   +  R   +P  
Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295


>gi|296417552|ref|XP_002838418.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634354|emb|CAZ82609.1| unnamed protein product [Tuber melanosporum]
          Length = 667

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 12 SLKPNQPIASIDLGTKRIGLAISD 35
          S    + I  +D GT   G+A  D
Sbjct: 2  SSSKQRLIIGLDYGTTYTGVAFCD 25


>gi|315636507|ref|ZP_07891743.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
 gi|315479156|gb|EFU69853.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
          Length = 701

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           NQ I  +D G K  G  LA+ D        A   P   ++ +  ++  +L  I    I  
Sbjct: 315 NQVILGMDPGYKT-GCKLAVIDENGLYLDSAVIYPTKPKEDIVSSSKVVLDLIKKYKITT 373

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
             IG     NG+       T  F++ +I +
Sbjct: 374 IAIG-----NGTAS---RETANFINELIKQ 395


>gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 710

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LAI D      A     P     + K+      L   I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKNFPNTSYVIVNESGASVYSASEL 412


>gi|297571329|ref|YP_003697103.1| phosphofructokinase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931676|gb|ADH92484.1| phosphofructokinase [Arcanobacterium haemolyticum DSM 20595]
          Length = 406

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 9/71 (12%)

Query: 44  RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94
              +       TA +L +++   +    ++GLP  ++    P                F 
Sbjct: 116 LHTIGGDDTNTTAADLAAYLHENDYELTVVGLPKTIDNDIVPIRQSLGAYTAAEQAAKFA 175

Query: 95  HNMIDRKVYVP 105
            N+I      P
Sbjct: 176 QNVIGEHRSNP 186


>gi|260655132|ref|ZP_05860620.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
 gi|260630054|gb|EEX48248.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
          Length = 156

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 39/159 (24%)

Query: 19  IASIDLGTKRIG-LAISDPGRRFAHPRPFLVRKKVTQTALELLS-------------FIT 64
           + ++D G  ++G  A +D G         L+ K        LL+                
Sbjct: 2   LLAVDPGRDKVGWAAGTDRGELIGSG--ILLGKSAPAGLKALLAGGPRPADCTVNEGSWP 59

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
            E   A ++G     NG+          F   ++      P    DE+ TT+ A+ +   
Sbjct: 60  AERPRAVLLG-----NGTWSD------KF-RELLLGLGASPV-LVDEKNTTLQARSLYWG 106

Query: 125 MNVSRKKRI----------QKVDSIAAALILQEVLDRIS 153
           ++  R  R           + +D +AA  IL+  L   S
Sbjct: 107 IHPPRSWRRLIPLSLQTPPRPLDDLAALCILRRYLQSGS 145


>gi|332362463|gb|EGJ40263.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKSAQIEASKKELSDLIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|322385014|ref|ZP_08058664.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270924|gb|EFX53834.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|229820397|ref|YP_002881923.1| phosphofructokinase [Beutenbergia cavernae DSM 12333]
 gi|229566310|gb|ACQ80161.1| phosphofructokinase [Beutenbergia cavernae DSM 12333]
          Length = 408

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 44  RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94
              +       TA +L  ++   +    ++GLP  ++    P                F 
Sbjct: 116 LHTIGGDDTNTTAADLAHYLEEHDYGLTVVGLPKTIDNDIVPIRQSLGAHTAAEQASEFA 175

Query: 95  HNMIDRKVYVP 105
            N+I      P
Sbjct: 176 QNIIGEHRSNP 186


>gi|300113866|ref|YP_003760441.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
           C-113]
 gi|299539803|gb|ADJ28120.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
           C-113]
          Length = 786

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70
           ++P+  +D G  R G  +A+ D   +    A   P   +K+       L S +    +  
Sbjct: 341 SRPVLGLDPGF-RTGVKVAVIDKTGKLLETATIYPHPPQKQWDAAINTLSSLLQKHGVEL 399

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
             IG     NG+       T   V  ++ +   
Sbjct: 400 VGIG-----NGTAS---RETEQLVAELLKKFPQ 424


>gi|292491394|ref|YP_003526833.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
 gi|291579989|gb|ADE14446.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
          Length = 762

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 21/124 (16%)

Query: 17  QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
           +P+  +D G  R G+  A+ D   +    A   P   +K+   +   L   +    +   
Sbjct: 322 RPVMGLDPGF-RTGVKAAVIDQTGKLLETATIYPHPPQKQWEASMDTLSGLVKKHQVELI 380

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVS-----AQQILID 124
            IG     NG+       T   V  ++ ++    +  +   E   +V      A Q L +
Sbjct: 381 SIG-----NGTAS---RETEQLVTELLKKEPEFKLQKLMVSEAGASVYSASEFAAQELPE 432

Query: 125 MNVS 128
           ++VS
Sbjct: 433 VDVS 436


>gi|332367155|gb|EGJ44891.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|322420516|ref|YP_004199739.1| Tex-like protein [Geobacter sp. M18]
 gi|320126903|gb|ADW14463.1| Tex-like protein [Geobacter sp. M18]
          Length = 756

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 15/102 (14%)

Query: 16  NQPIASIDLGTKRIGL---AISDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAA 70
            + +  +D G  R G    AIS+ GR    A   P     K      EL+  +   +   
Sbjct: 321 GRRVLGVDPGL-RTGCKLAAISETGRFLEQATIYPHTGGAKAASAGGELVQLVERHDCRL 379

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDE 111
             IG     NG+ G     T  FV   +    V    V  +E
Sbjct: 380 IAIG-----NGTGG---RETEVFVREALRAAGVKAETVMVNE 413


>gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LAI D      A     P     + K+      L   I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412


>gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LAI D      A     P     + K+      L   I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412


>gi|332358670|gb|EGJ36493.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|332522618|ref|ZP_08398870.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313882|gb|EGJ26867.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 710

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P     + K+ Q   +L + I+ 
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIAQAKKDLAAIISD 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            NI    IG     NG+       + AFV  ++       +V  +E   +V +   L
Sbjct: 364 YNIEIIAIG-----NGTAS---RESEAFVAEVLKDFPNCSYVIVNESGASVYSASEL 412


>gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004]
 gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004]
          Length = 780

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 9   LVKSLKPNQPIASIDLGTKRIGL--AISDPGR-RFAHPRPFLVRKKVTQTALELLSFITT 65
           ++ +    +    +D G  R G+  A+ D      A    +    +  + A  + +  T 
Sbjct: 318 MMAAPAGMRATMGLDPGL-RTGVKVAVVDSTGKLIATDTVYPHTGQEVKAAAAVAALCTK 376

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
             +    IG     NG+       T  F  N+  +   V
Sbjct: 377 YQVELVAIG-----NGTAS---RETERFFANIQKQYPDV 407


>gi|229816713|ref|ZP_04446999.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
           13280]
 gi|229807689|gb|EEP43505.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
           13280]
          Length = 810

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
               + ++D G  R G  +A+ D   +        P   R+ +  T  ELL       I 
Sbjct: 404 RGARVIALDPG-YRAGCKVAVLDEYGKLLDHTILYPTPPRRDIAGTKRELLRLARKHRIN 462

Query: 70  AFIIGLPLNMNGSEGPRVHSTR-AFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             ++G     NG+          AF+    +    + +   +E   +V +   L
Sbjct: 463 TIVVG-----NGTASRETEEVVSAFI---AESAPELRYTIVNEAGASVYSASKL 508


>gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 179

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)

Query: 18 PIASIDLGTKRIG----LAISDPGRRFAHPRPF 46
           I  +D G +R G    +A     R  AH    
Sbjct: 12 RILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVT 44


>gi|291542424|emb|CBL15534.1| Transcriptional accessory protein [Ruminococcus bromii L2-63]
          Length = 715

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%)

Query: 15  PNQPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69
             + + ++D G  R G   A+ D   +        P    KK+ ++   LL  I   ++ 
Sbjct: 312 KGKTVLALDPG-YRTGCKTAVVDSTGKVLDTTVIYPTHSDKKIQESKQTLLRLIKKHHVD 370

Query: 70  AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
              IG     NG+          F    I    + P  + 
Sbjct: 371 IISIG-----NGTASKETEM---FTAETIKEADH-PVYYM 401


>gi|301632867|ref|XP_002945501.1| PREDICTED: protein tex-like [Xenopus (Silurana) tropicalis]
          Length = 792

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T     ++I 
Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDRLAADLIK 414


>gi|168704816|ref|ZP_02737093.1| RNA binding S1 domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 1097

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 15  PNQPIASIDLGTKRIG--LAISDPGRRFAH-PRPFLVRKKVTQTALE-LLSFITTENIAA 70
             + + +ID G  R G  LA  D   +       +   +K    A   L   I    I+ 
Sbjct: 408 RGKKVLAIDPGI-RTGCKLAALDETGKLLEDAVIYPHNQKQAGDAKRKLEQLIRKYQISV 466

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105
             IG       SE         FVH  ++     P
Sbjct: 467 IAIGNGTGCRDSEQLVADLIAEFVHRRLNPVPEAP 501


>gi|37521877|ref|NP_925254.1| hypothetical protein gll2308 [Gloeobacter violaceus PCC 7421]
 gi|35212876|dbj|BAC90249.1| gll2308 [Gloeobacter violaceus PCC 7421]
          Length = 136

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 25/141 (17%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           I  ID G  + GLA             F       Q   ++   +    +AA +IG    
Sbjct: 2   ILGIDPGRSKCGLA----LVGLDRKLYFRSVVASDQLLKQVERLLEDFPVAALVIG---- 53

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
            + +          +   +      V  V   ER ++  A+      N  R         
Sbjct: 54  -DQTTSE------YWQAQLRAAFPEVRLVAVPERRSSEQARARYWQFNPPRGLNRLLPQD 106

Query: 134 -----QKVDSIAAALILQEVL 149
                +  D + A ++++  L
Sbjct: 107 FRVPPEAYDDVVALILVERYL 127


>gi|325690815|gb|EGD32816.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115]
          Length = 710

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|322391920|ref|ZP_08065384.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
 gi|321145146|gb|EFX40543.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
          Length = 709

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 21/123 (17%)

Query: 9   LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
           LV  LK  + +   D      R G  LA+ D   +        P      +++ +    L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDVTGKMLTTQVIYPVKPASARQIEEAKRYL 356

Query: 60  LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
              I    +    IG     NG+       + AFV  ++     V +V  +E   +V + 
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVSEVLKDFPEVSYVIVNESGASVYSA 408

Query: 120 QIL 122
             L
Sbjct: 409 SEL 411


>gi|159902814|ref|YP_001550158.1| hypothetical protein P9211_02731 [Prochlorococcus marinus str. MIT
           9211]
 gi|159887990|gb|ABX08204.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9211]
          Length = 146

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 25/142 (17%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
            +ID G ++ GL ++D           ++   V      ++ +     I   I+G     
Sbjct: 5   IAIDPGREKCGLILADLDNHIVIEGKVVISSSVLDL---IIKWQNNYEIKLIILG----- 56

Query: 80  NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSRKK 131
           NG+          F +  +     +     +E  TT  A+    +++        + ++ 
Sbjct: 57  NGTSS-------NFWYLKLIEVCKLSIKLVEESGTTFRARGRYFEISSPNFFLRFIPKQM 109

Query: 132 RI--QKVDSIAAALILQEVLDR 151
           RI  + +DS AA L+L++ L R
Sbjct: 110 RIPPKNLDSFAALLLLEDYLHR 131


>gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS]
 gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS]
          Length = 791

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G+  A+ D   +    A   P   RK    +   
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T     ++I 
Sbjct: 382 LGKLCAKHGVNLIAIG-----NGTAS---RETDKLAADLIK 414


>gi|221236281|ref|YP_002518718.1| Holliday junction resolvase [Caulobacter crescentus NA1000]
 gi|220965454|gb|ACL96810.1| crossover junction endodeoxyribonuclease ruvC [Caulobacter
          crescentus NA1000]
          Length = 173

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)

Query: 7  EDLVKSLKPNQPIASIDLGTKRIG---LAI-SDPGRRFAHPRPFLVRKKVTQT-----AL 57
          E ++ + +    I  +D G +R G   LA+        AH       K            
Sbjct: 3  EHMMNANRLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFE 62

Query: 58 ELLSFITTENIAAFII 73
           + + I         +
Sbjct: 63 GITAVIEQHRPDEAAV 78


>gi|332638877|ref|ZP_08417740.1| transcriptional accessory protein [Weissella cibaria KACC 11862]
          Length = 727

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 9   LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALE-LLSF 62
           L+ +    + +   D G  R G  LA+ D   +F   A   P    K   + A E ++  
Sbjct: 319 LMAAPLRGRVVLGFDPGI-RTGSKLAVVDENGKFLEKAVIYPHRAAKYDPKGAKETIIKL 377

Query: 63  ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTV 116
           +    +A   IG     NG+       ++ F+ ++I      + +V  +E   +V
Sbjct: 378 VKQYGVALVAIG-----NGTAS---RESQTFIADIIKSDLPDLQYVVVNESGASV 424


>gi|332712008|ref|ZP_08431938.1| restriction endonuclease [Lyngbya majuscula 3L]
 gi|332349336|gb|EGJ28946.1| restriction endonuclease [Lyngbya majuscula 3L]
          Length = 444

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 1  MSILLIEDLVKSLKPNQPIASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALE 58
          M    I+D   S+  +  I  ID G+K  G+A + +   R  +      R +  + ALE
Sbjct: 42 MPDRSIDD---SVTHSHRIK-IDPGSKTTGIAIVCEQTGRVTNALEINHRGQQIKKALE 96


>gi|227495533|ref|ZP_03925849.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Actinomyces
           coleocanis DSM 15436]
 gi|226831080|gb|EEH63463.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Actinomyces
           coleocanis DSM 15436]
          Length = 407

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 44  RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94
              +       TA +L  ++   +    ++GLP  ++    P                F 
Sbjct: 116 LHTIGGDDTNTTAADLAHYLEENDYQLTVVGLPKTIDNDVVPVRQSLGAWTAAEEAAKFA 175

Query: 95  HNMIDRKVYVP 105
            N+I      P
Sbjct: 176 RNIIGEHRSNP 186


>gi|324993865|gb|EGC25784.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405]
          Length = 710

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|262038236|ref|ZP_06011626.1| Fe(3+) ions import ATP-binding protein FbpC [Leptotrichia
           goodfellowii F0264]
 gi|261747703|gb|EEY35152.1| Fe(3+) ions import ATP-binding protein FbpC [Leptotrichia
           goodfellowii F0264]
          Length = 354

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 50  KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
           +++ +   ++L  +  E+ A  +   P  M+G +  RV   RA + N          + +
Sbjct: 115 QEIDERVKKILQLMKMEDFAERV---PSQMSGGQQQRVSLARALIMNSS-------VLLF 164

Query: 110 DERLTTVSAQQILIDMNVSRKKRIQK 135
           DE L+ + A+  L   +  RK + + 
Sbjct: 165 DEPLSNLDAKLRLHMRDEIRKLQQEV 190


>gi|125718359|ref|YP_001035492.1| transcriptional accessory ribonuclease (YqgFc, S1) [Streptococcus
           sanguinis SK36]
 gi|125498276|gb|ABN44942.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
           [Streptococcus sanguinis SK36]
 gi|324991505|gb|EGC23438.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353]
          Length = 710

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|78778635|ref|YP_396747.1| hypothetical protein PMT9312_0250 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712134|gb|ABB49311.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 145

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 26/141 (18%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + SID G  + GL + D  ++       L  + + +    L+S+   ENI+  IIG   
Sbjct: 3   KLISIDPGKCKCGLVVVDLHQKKVDQAVVLNTEFLPKHVKTLISY---ENISKVIIG--- 56

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR----- 132
             NG+   +      F+ N          +  +E+ TT  A++   ++  +R  +     
Sbjct: 57  --NGTTSRQNIEKLEFIKN--------DLIIVEEKNTTFRAKKRYFELFPTRGLKTFLPK 106

Query: 133 -----IQKVDSIAAALILQEV 148
                 + +D+++A +IL++ 
Sbjct: 107 EIFIMNKNLDAVSALIILEDY 127


>gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
          neapolitanus c2]
 gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
          neapolitanus c2]
          Length = 188

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 18 PIASIDLGTKRIGLAISDPGRRFAH 42
           +  ID G+  +G+A+ D  R  A 
Sbjct: 5  RVMGIDPGSVTMGVAVLDFERGSAT 29


>gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
 gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
          Length = 791

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G+  A+ D   +    A   P   RK    +   
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T     ++I 
Sbjct: 382 LGKLCAKHGVNLIAIG-----NGTAS---RETDKLAADLIK 414


>gi|220911765|ref|YP_002487074.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
 gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 830

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALELLSFITTENIAA 70
           N+P   +D G  R G  +A+ D   +        P    +K  +    L+       +  
Sbjct: 343 NRPTLGLDPGL-RTGVKVAVVDGTGKVVATDTVYPHAPARKWDEALASLVKLARQHAVEL 401

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
             IG     NG+       T      +I     V
Sbjct: 402 VAIG-----NGTAS---RETDKLAAELIKLLPDV 427


>gi|302390453|ref|YP_003826274.1| type IV pilus assembly protein PilM [Thermosediminibacter oceani
          DSM 16646]
 gi|302201081|gb|ADL08651.1| type IV pilus assembly protein PilM [Thermosediminibacter oceani
          DSM 16646]
          Length = 298

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 12 SLKPNQPIASIDLGTKRIGLAI--SDPGR-RFAHPRPFLVRKKVTQTALELLSFITT 65
          SL+  + +  +DLGT RI +A+   D    + A P P      +T+    L   +  
Sbjct: 5  SLRRQKGLLGVDLGTARIKVAVVRGDRLLAKGAVPAPAGGWDNITEMIAALAEAVQQ 61


>gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601]
 gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601]
          Length = 794

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T      +I 
Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 414


>gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC]
 gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC]
          Length = 794

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
            + DL+ +     + +  +D G  R G  +A+ D   +    A   P   R+    +   
Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381

Query: 59  LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
           L        +    IG     NG+       T      +I 
Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 414


>gi|223985347|ref|ZP_03635418.1| hypothetical protein HOLDEFILI_02724 [Holdemania filiformis DSM
           12042]
 gi|223962683|gb|EEF67124.1| hypothetical protein HOLDEFILI_02724 [Holdemania filiformis DSM
           12042]
          Length = 255

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 40  FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFV 94
            A P   + R    +    +        I   +   P  M+G +  RV   RA +
Sbjct: 107 IALPL-TIQRVNPKKIEARIKKLSVQLGIEEVLKKYPYQMSGGQQQRVACARAMI 160


>gi|194017318|ref|ZP_03055930.1| bacitracin export ATP-binding protein BceA [Bacillus pumilus ATCC
           7061]
 gi|194011186|gb|EDW20756.1| bacitracin export ATP-binding protein BceA [Bacillus pumilus ATCC
           7061]
          Length = 253

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 47  LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
           + +    +             I       P  ++G +  R  + RAF+H         P 
Sbjct: 112 ISKTPKKEAFERFQQLAEDMGIYELRDKYPNELSGGQKQRTSAVRAFIHEPSLIFADEPT 171

Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKV-----DSIAAAL 143
              D    + SA  +L  +    +KR   +     D +AA+ 
Sbjct: 172 GALD----SKSASDLLNKLQDFNRKRKATIVMVTHDPVAASY 209


>gi|157693351|ref|YP_001487813.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032]
 gi|157682109|gb|ABV63253.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Bacillus pumilus SAFR-032]
          Length = 253

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 47  LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
           + +    +             I       P  ++G +  R  + RAF+H         P 
Sbjct: 112 ISKTPKKEAFERFQQLAEDMGIYELRDKYPNELSGGQKQRTSAVRAFIHEPSLIFADEPT 171

Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKV-----DSIAAAL 143
              D    + SA  +L  +    +KR   +     D +AA+ 
Sbjct: 172 GALD----SKSASDLLNKLQDFNRKRKATIVMVTHDPVAASY 209


>gi|171780107|ref|ZP_02921011.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281455|gb|EDT46890.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 710

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P     + K+ Q+  +L   I++
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIEQSKKDLAELISS 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 YGIEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412


>gi|313889985|ref|ZP_07823622.1| Tex-like protein N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121643|gb|EFR44745.1| Tex-like protein N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 713

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P     + K+ Q   +L + I+ 
Sbjct: 310 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIAQAKKDLAALISD 366

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 367 YKIEIIAIG-----NGTAS---RESEAFVADVLKDFPNCSYVIVNESGASVYSASEL 415


>gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
 gi|148845783|gb|EDL60125.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
          Length = 828

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGR-RFAHPRPFLVRKKVTQTALE--LLSFITTENIAA 70
            Q I +ID G  R G  LA+ D      A    ++      +      L   +T      
Sbjct: 331 GQRILAIDPGL-RTGCKLAVLDELGYCVATDLVYVTGSADKKEFARKKLAEVMTEHQCQL 389

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
             IG     NG+       T   +  MI++ + 
Sbjct: 390 VAIG-----NGT---ACRETEEIITEMIEQDLP 414


>gi|224047235|ref|XP_002194171.1| PREDICTED: similar to S1 RNA-binding domain-containing protein 1
           [Taeniopygia guttata]
          Length = 1207

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 15  PNQPIASIDLGTKRIG--LA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
             + +  +D G K  G  LA IS   +       +L   +  + A ++   +   N +  
Sbjct: 756 RGRALMGVDPGYKH-GCKLAIISPTSQILHTDVVYLHSGQGFREAEKIKRLLLQYNCSTV 814

Query: 72  IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
           +IG     NG+       T A+  ++I +K + P    
Sbjct: 815 VIG-----NGT---ACRETEAYFADLIMKKYFAPLDVV 844


>gi|72383450|ref|YP_292805.1| hypothetical protein PMN2A_1614 [Prochlorococcus marinus str.
           NATL2A]
 gi|72003300|gb|AAZ59102.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 145

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 29/142 (20%)

Query: 20  ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77
            SID G K+ GL ++D           +      + + +  +  +     I   IIG   
Sbjct: 5   ISIDPGMKKCGLLLADM-----QSGEVIEAGVASLNKFSDLVSQWNEDHEITKIIIG--- 56

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSRKKRI 133
             NG+          ++ N + R       + +ER +T+ A+    +        R    
Sbjct: 57  --NGTN-------CKYIENKLKRNNSFNINYVNERGSTLRARFRYWEIWPPNYFIRWLPK 107

Query: 134 QK------VDSIAAALILQEVL 149
           +       +D+I A ++L++ L
Sbjct: 108 EILFPPANLDAIVALILLEDFL 129


>gi|319939357|ref|ZP_08013717.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
           1_2_62CV]
 gi|319811343|gb|EFW07638.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
           1_2_62CV]
          Length = 712

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  +L   I  
Sbjct: 309 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVPPAKAAQIEASKQDLSDLIDQ 365

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 366 FGVEIIAIG-----NGTAS---RESEAFVAEVLKTHPNVSYVIVNESGASVYSASEL 414


>gi|33601194|ref|NP_888754.1| hypothetical protein BB2210 [Bordetella bronchiseptica RB50]
 gi|33602484|ref|NP_890044.1| hypothetical protein BB3509 [Bordetella bronchiseptica RB50]
 gi|33575629|emb|CAE32707.1| phage-related conserved hypothetical protein [Bordetella
           bronchiseptica RB50]
 gi|33576923|emb|CAE34003.1| phage-related conserved hypothetical protein [Bordetella
           bronchiseptica RB50]
          Length = 227

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 13  LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-------LLSFITT 65
           L PN  I ++DLGTK +G A+     R +H       +               L+  IT 
Sbjct: 72  LGPNVTILALDLGTK-LGWAVRGRDGRTSHGTEVFTPRASWSPGQRWLRARSFLVEVITQ 130

Query: 66  ENIAAF 71
             + A 
Sbjct: 131 RQVHAI 136


>gi|91779869|ref|YP_555077.1| putative polyphosphate glucokinase [Burkholderia xenovorans LB400]
 gi|91692529|gb|ABE35727.1| putative polyphosphate glucokinase [Burkholderia xenovorans LB400]
          Length = 266

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 17  QPIASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVRKKVTQTALELLSFITTEN 67
           + I +ID+G    GL  AI D          R A P P    + V   A  +   +  E 
Sbjct: 13  ERILAIDVGG--TGLKAAIIDADGKMKTERVRVATPHPCTPDQLVDALAKLVAPLVEQEP 70

Query: 68  IAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKVYVPFVFWD 110
                IG P +  N         G       A   ++  R   +P    +
Sbjct: 71  PTRMSIGFPGVVRNNRILTAPHFGVEGWHDIALADSLAQRLGGLPVRMIN 120


>gi|254522654|ref|ZP_05134709.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
 gi|219720245|gb|EED38770.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
          Length = 795

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 5   LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AH----PRPFLVRKKVTQTA 56
            ++DL+ +     + +  +D G  R G  +A+ D   +  A     P     R++  Q+ 
Sbjct: 321 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVVDATGKLVATDTIYPHE--PRRQWEQSL 377

Query: 57  LELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
             +       N+    IG     NG+       
Sbjct: 378 QTIKQLCAKHNVELIAIG-----NGTASRETDK 405


>gi|15789627|ref|NP_279451.1| hypothetical protein VNG0368C [Halobacterium sp. NRC-1]
 gi|169235339|ref|YP_001688539.1| CinA C-terminal domain-containing protein [Halobacterium salinarum
           R1]
 gi|10579987|gb|AAG18931.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726405|emb|CAP13188.1| cinA C-terminal domain protein [Halobacterium salinarum R1]
          Length = 171

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 24  LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
           +GT  IG+A +      A     +VR++       + + I  
Sbjct: 117 VGTAYIGVAYA-GDWGTATSATTVVRREFDGDRQAVKAQIAR 157


>gi|313667339|ref|YP_004049740.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM
          14977]
 gi|313153970|gb|ADR37820.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM
          14977]
          Length = 172

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
          I  ID G+K+IGLA     +    PR +  R    +   +L  +I   ++   
Sbjct: 2  ILGIDPGSKKIGLA---ALQTHPRPRVYKSRVLPVKNLTQLGDWIEEASLVVL 51


>gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
          brasiliensis DSM 5305]
 gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
          brasiliensis DSM 5305]
          Length = 167

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 13 LKPNQPIASIDLGTKRI--GL--A-----ISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
          +   Q I  ID G  R   G+  A     I D G   A      +  ++ + A E+ + I
Sbjct: 1  MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60

Query: 64 TTENIAAFII 73
               +  +I
Sbjct: 61 NDWKPSVMVI 70


>gi|15890736|ref|NP_356408.1| ABC transporter, nucleotide binding/ATPase protein (polyamine)
           [Agrobacterium tumefaciens str. C58]
 gi|15159011|gb|AAK89193.1| ABC transporter, nucleotide binding/ATPase protein (polyamine)
           [Agrobacterium tumefaciens str. C58]
          Length = 360

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 12/77 (15%)

Query: 40  FAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
            A P     R K    A   E+L  +  E         P  M+G +  RV   RA     
Sbjct: 98  IAFPLKVRRRSKADIDAKVKEMLRLVRLEGFEDR---KPAQMSGGQQQRVALARALA--- 151

Query: 98  IDRKVYVPFVFWDERLT 114
                  P +  DE L+
Sbjct: 152 ----YDPPVLLMDEPLS 164


>gi|315127007|ref|YP_004069010.1| amino acid decarboxylase [Pseudoalteromonas sp. SM9913]
 gi|315015521|gb|ADT68859.1| amino acid decarboxylase [Pseudoalteromonas sp. SM9913]
          Length = 636

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 47  LVRKKVTQTALELLSF-----ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101
             R  +    +E L       I  E+     + L  ++    G R +S   F+  +   +
Sbjct: 31  FERDDIHIDIIERLELKQALDIVEEDGDIQAVVLSWDLQNKVGERTYS--RFIEQLKGIR 88

Query: 102 VYVPFV 107
           + +P  
Sbjct: 89  LELPVY 94


>gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379]
          Length = 723

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
            + +  ID G  R G  LA  D   RF       P     ++ Q   ELL  + T +I  
Sbjct: 323 GKRVLGIDPGF-RTGSKLAALDATGRFMEHVTIYPHTGEARIHQARQELLRLVETFDIEM 381

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
             +G     NG+ G  +     F    +      +P V   E   +V SA +I  +
Sbjct: 382 IAVG-----NGTAGREMEI---FSRETLAGAGWQIPVVSVSEAGASVYSASEIARE 429


>gi|284049365|ref|YP_003399704.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
 gi|283953586|gb|ADB48389.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
          Length = 724

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGR-RFAHPRPFLVRKKVTQTALE--LLSFITTENIAA 70
              +  +D G  R G  +A+ DP      H    + + +  +   E  LLS I   ++  
Sbjct: 317 GHTVMGLDPG-YRTGCKVAVVDPTGQVLDHGVIQVTQSEGQKKKAEALLLSMIQKHHVTL 375

Query: 71  FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF 108
             IG     NG+          F   +I         +
Sbjct: 376 LSIG-----NGTASYETEQ---FAARLIQEHQLKDVHY 405


>gi|222152742|ref|YP_002561919.1| transcription accessory protein [Streptococcus uberis 0140J]
 gi|222113555|emb|CAR41362.1| putative transcription accessory protein [Streptococcus uberis
           0140J]
          Length = 710

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P   + K+     EL   I++
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTHVIYPVPPASQTKIQLAKKELAEIISS 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
            +I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 364 YDIEIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412


>gi|56807868|ref|ZP_00365703.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes
           M49 591]
          Length = 580

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LAI D   +        P     + K+      L   I T
Sbjct: 307 KGEMVLGFDPAF---RTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIET 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412


>gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 19  IASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
           +  ID G  R G  LA+      F       P   + +  Q + ++ + I    +    +
Sbjct: 350 VLGIDPGL-RTGSKLAVVSATGAFLDHVTIYPHTQKAQQPQFSRQISALIEKYAVEMVAV 408

Query: 74  GLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
           G     NG+ G  +     FV   + D     P V  +E   +V SA +I  +
Sbjct: 409 G-----NGTGGREMEQ---FVRQSLRDYDHSCPVVMVNEAGASVYSASEIARE 453


>gi|294101286|ref|YP_003553144.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM
           12261]
 gi|293616266|gb|ADE56420.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM
           12261]
          Length = 154

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 42/158 (26%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---------VTQTALELLSFITTENIA 69
           I  ID G  +IG A +D     A     +V K+         + +    LL ++      
Sbjct: 2   ILGIDPGKDKIGWAFADSKG--ALLFSGIVNKEELSSFWEVFMQKQWHNLLPWLKEREKE 59

Query: 70  --------AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-- 119
                     ++G     NG+          F   + +R +       +E  TT+ A+  
Sbjct: 60  PLLSESELTIVVG-----NGT---TCKEVLLF---LKERGLDAQV--VEEYGTTLEARKV 106

Query: 120 --QILIDMNVSR------KKRIQKVDSIAAALILQEVL 149
             ++     V +      +   + VD +AA +I++  L
Sbjct: 107 YWRLHPPQGVWKFIPKSLRVPNRDVDDLAAFVIIRRYL 144


>gi|163839885|ref|YP_001624291.1| ATPase family protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953361|gb|ABY22876.1| ATPase family protein [Renibacterium salmoninarum ATCC 33209]
          Length = 313

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 19/124 (15%)

Query: 1   MSILL--IEDLVKSLKPNQPIASIDL-GTKR--I----GLAISDPGRRFAHPRPFLVRKK 51
           M +L   + D+  +  P   I  +D+ G+K   I    G+ I+D     A+    +   +
Sbjct: 1   MRLLPTILRDVSSTSIPPTAIIGLDIGGSKTRGILWHDGVVIADEQTGSAN-VQNVSIDE 59

Query: 52  VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS-TRAFVHNMIDRKVYVPF-VFW 109
             Q   +L S + T+ +     G       S G    +   A    +      VP  V  
Sbjct: 60  ARQNLQKLFSLLPTDGVEQIFAG-------SGGIDTEADAEALASLIRPHVPGVPVTVVH 112

Query: 110 DERL 113
           D RL
Sbjct: 113 DTRL 116


>gi|327470660|gb|EGF16116.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330]
          Length = 710

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P       ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVAPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|315221406|ref|ZP_07863327.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
 gi|315189525|gb|EFU23219.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
          Length = 709

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  +L + I  
Sbjct: 306 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVPPAKAAQIEASKQDLSNLIDQ 362

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 363 FGVEIIAIG-----NGTAS---RESEAFVAEVLKTHPNVSYVIVNESGASVYSASEL 411


>gi|255016321|ref|ZP_05288447.1| transposase [Bacteroides sp. 2_1_7]
          Length = 338

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 19/99 (19%)

Query: 5   LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
            I++L  S         IDLG K   LA+   GR F +P       K  Q +L+ L  + 
Sbjct: 91  TIQELPASAIQGNTTLGIDLGIKS--LAVCSDGRTFDNP-------KNLQRSLDRLKLLQ 141

Query: 65  TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
                     L     GS        R  V  + +R   
Sbjct: 142 KR--------LSRKQKGSANRNEARIR--VARLQERIAN 170


>gi|327490297|gb|EGF22085.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058]
          Length = 710

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412


>gi|327474740|gb|EGF20145.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408]
          Length = 710

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412


>gi|325687255|gb|EGD29277.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72]
          Length = 710

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412


>gi|324994814|gb|EGC26727.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678]
 gi|327461023|gb|EGF07356.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057]
 gi|327463129|gb|EGF09450.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1]
          Length = 710

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412


>gi|325696116|gb|EGD38007.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160]
 gi|328946764|gb|EGG40902.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087]
          Length = 710

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LA+ D   +        P P     ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSGLIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|150020177|ref|YP_001305531.1| RNA-binding S1 domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792698|gb|ABR30146.1| RNA binding S1 domain protein [Thermosipho melanesiensis BI429]
          Length = 662

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 15  PNQPIASIDLGTKRIG---LAISDPGR---RFAHPRPFLVRKKVTQTALELLSFITTENI 68
            N  I +ID G K  G   +A+ D        A   P         +  ++L  +    +
Sbjct: 289 KNTRILAIDPGNKT-GCKIVAL-DELGNPLEHAVIYPTAPYFDTKNSEKKILKMLQNHKL 346

Query: 69  AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
              +IG     NG+       T+ F+   I +
Sbjct: 347 KLIVIG-----NGTAS---RETQQFIAKTIKK 370


>gi|257452603|ref|ZP_05617902.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|257466460|ref|ZP_05630771.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917617|ref|ZP_07913857.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059143|ref|ZP_07923628.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|313684819|gb|EFS21654.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|313691492|gb|EFS28327.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 723

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFA-----HPRPFLVRKKVTQTALEL-LSFITTEN 67
            + I ++D G  R G  +AI D    +           +  +K  + A +  L +I    
Sbjct: 317 EKTILALDPG-YRTGCKVAILDKHGFYQENDVFFLVEGMHHEKQLEDARKKALKYIKKYG 375

Query: 68  IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101
           I   +IG     NG+       T +FV  +I  +
Sbjct: 376 IDLVVIG-----NGTAS---RETESFVAKLIREE 401


>gi|296162062|ref|ZP_06844860.1| ROK family protein [Burkholderia sp. Ch1-1]
 gi|295887683|gb|EFG67503.1| ROK family protein [Burkholderia sp. Ch1-1]
          Length = 266

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 17  QPIASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVRKKVTQTALELLSFITTEN 67
           + I +ID+G    GL  AI D          R A P P    + V   A  +   +  E 
Sbjct: 13  ERILAIDVGG--TGLKAAIIDADGKMKTERVRVATPHPCTPDQLVDALAKLVAPLVAQEP 70

Query: 68  IAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKVYVPFVFWD 110
                IG P +  N         G       A   ++  R   +P    +
Sbjct: 71  PTRMSIGFPGVVRNNRILTAPHFGVEGWHDIALADSLAQRLGGLPVRMIN 120


>gi|295700582|ref|YP_003608475.1| ROK family protein [Burkholderia sp. CCGE1002]
 gi|295439795|gb|ADG18964.1| ROK family protein [Burkholderia sp. CCGE1002]
          Length = 274

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 20/128 (15%)

Query: 1   MSILLIEDLVKSLKPNQP--IASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVR 49
           M       + ++   +    I +ID+G    GL  AI D          R A P P    
Sbjct: 1   MPTRNKNAVKRNAPKSGSEHILAIDVGG--TGLKAAIIDANGQMKTERVRVATPHPCTPD 58

Query: 50  KKVTQTALELLSFITTENIAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKV 102
           + V   A  +   I         IG P +  N         G       A   ++  R  
Sbjct: 59  QLVDALAQLVAPLIEQVQPVCISIGFPGVVRNNRILTAPHFGIEGWHDIALADSLARRLG 118

Query: 103 YVPFVFWD 110
            +P    +
Sbjct: 119 GLPVRMIN 126


>gi|320104703|ref|YP_004180294.1| Tex-like protein [Isosphaera pallida ATCC 43644]
 gi|319751985|gb|ADV63745.1| Tex-like protein [Isosphaera pallida ATCC 43644]
          Length = 1315

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 16  NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIA 69
           NQ + +ID G +  G  +A+ DP          +     + + ++  L+L   I    ++
Sbjct: 428 NQTVLAIDPGFRS-GCKVAVLDPHGVL-LEHTVIYPHPPQNRRSEAKLQLKDLIAKHQVS 485

Query: 70  AFIIGLPLNMNGSEGPRVHSTRA 92
              IG     NG+         A
Sbjct: 486 VVAIG-----NGTACRETEEVIA 503


>gi|75675014|ref|YP_317435.1| hypothetical protein Nwi_0818 [Nitrobacter winogradskyi Nb-255]
 gi|74419884|gb|ABA04083.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 177

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
          ++ I ++DLGT R G A+     R A         +     +  L F  
Sbjct: 22 SRTILALDLGT-RTGWAVLPRSGRIASGVTEFRPGRFEGAGMAFLRFEK 69


>gi|121534977|ref|ZP_01666795.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans
           Nor1]
 gi|121306390|gb|EAX47314.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans
           Nor1]
          Length = 141

 Score = 33.4 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 28/144 (19%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D G  + G+A+    R       +         A  +         A  ++G    
Sbjct: 5   VIAVDPGRDKCGVAVVSRDR----GVLYKAVVPTAALAAAVAKLAREFGAATVVVG---- 56

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
            + + G         V  +  + +    +  V  DE  +T  A+      N  R  R   
Sbjct: 57  -DRTTGSAA------VKQLSVQPIDGRRLHIVTVDEHRSTDEARHRYWLENPPRGLRRLI 109

Query: 134 --------QKVDSIAAALILQEVL 149
                     VD   A ++ +   
Sbjct: 110 PTTMQVPPAPVDDYVAVILAERYF 133


>gi|16127468|ref|NP_422032.1| Holliday junction resolvase [Caulobacter crescentus CB15]
 gi|20978751|sp|Q9A3G6|RUVC_CAUCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
          AltName: Full=Holliday junction nuclease ruvC; AltName:
          Full=Holliday junction resolvase ruvC
 gi|13424922|gb|AAK25200.1| Holliday junction resolvase [Caulobacter crescentus CB15]
          Length = 169

 Score = 33.4 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%)

Query: 18 PIASIDLGTKRIG---LAI-SDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
           I  +D G +R G   LA+        AH       K             + + I     
Sbjct: 10 RILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIEQHRP 69

Query: 69 AAFII 73
              +
Sbjct: 70 DEAAV 74


>gi|310816123|ref|YP_003964087.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
           component [Ketogulonicigenium vulgare Y25]
 gi|308754858|gb|ADO42787.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
           component [Ketogulonicigenium vulgare Y25]
          Length = 273

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 48  VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV 107
           VRK++ + A ++L+ +    +A F    P  ++G    R    R FV          P +
Sbjct: 124 VRKRLPEDADQVLADL---GLADFADARPAQLSGGMRQRAAIARGFVQ-------GAPLM 173

Query: 108 FWDERLT-----TVSAQQILIDMNVSRKKRIQKV 136
             DE  +     T  A + L  ++V  +KR   +
Sbjct: 174 LMDEPFSALDELTRDAVR-LRLLDVWERKRKTVI 206


>gi|323351224|ref|ZP_08086880.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
 gi|322122448|gb|EFX94159.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
          Length = 710

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LAI D   +        P       ++  +  EL   I  
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAIVDATGKMLTTHVIYPVAPAKPAQIEASKKELSELIEQ 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             +    IG     NG+       + AFV  ++     V +V  +E   +V +   L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412


>gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
 gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
          Length = 710

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 15  PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
             + +   D      R G  LAI D   +        P     + K+      L   I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIET 363

Query: 66  ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
             I    IG     NG+       + AFV +++       +V  +E   +V +   L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.190    0.615 

Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,662,901,170
Number of Sequences: 14124377
Number of extensions: 183428239
Number of successful extensions: 455020
Number of sequences better than 10.0: 2369
Number of HSP's better than 10.0 without gapping: 3120
Number of HSP's successfully gapped in prelim test: 1068
Number of HSP's that attempted gapping in prelim test: 446173
Number of HSP's gapped (non-prelim): 4283
length of query: 160
length of database: 4,842,793,630
effective HSP length: 122
effective length of query: 38
effective length of database: 3,119,619,636
effective search space: 118545546168
effective search space used: 118545546168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 77 (33.8 bits)