BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] (160 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 160/160 (100%), Positives = 160/160 (100%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ Sbjct: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 >gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 167 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/159 (88%), Positives = 152/159 (95%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ Sbjct: 61 SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+ Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159 >gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 163 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+ Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771] Length = 166 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 3 MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 63 DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161 >gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512] Length = 164 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42] gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN 42] Length = 164 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PF++WDERL+TV+A++ Sbjct: 61 DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +LI+M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159 >gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652] gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652] Length = 164 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +A F+IGLP+NM+GS GPRV +TRAFV NM + K +PFV+WDERL+TV+A++ Sbjct: 61 DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EEKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84] gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84] Length = 164 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 92/155 (59%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L IEDL L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A LL Sbjct: 1 MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E +AAF+IGLP+NM+GS GPRV +TRAFV +M D K +PFV+WDERL+TV+A++ Sbjct: 61 AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMAD-KTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L++M+VSR KR +++DS AA+ ILQ LDR+S L Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154 >gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4] gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4] Length = 158 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/158 (56%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR + R K T+ A LL Sbjct: 1 MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E +AAF+IGLP+NM+GS GPRV +TRAFV M + K +PFV+WDERL+TV+A + Sbjct: 61 AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAE-KTDIPFVYWDERLSTVAATR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++M+VSR KR +++DS AA+ ILQ LDR+S L S+ Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157 >gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K T A LL Sbjct: 1 MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3] gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3] Length = 159 Score = 186 bits (473), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K T+ A LL Sbjct: 1 MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E ++AFIIGLP+NM+GS GPR +TRAFV M K +PF+FWDERL+TV+A++ Sbjct: 61 AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +L++M+VSR KR +++DS AA+ ILQ LDR+S L + G Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159 >gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv. viciae 3841] Length = 164 Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K A LL Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58] gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 159 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 87/155 (56%), Positives = 116/155 (74%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K TQ A LL Sbjct: 1 MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E +AAF+IGLP+NM+GS GPR +TRAFV M K +PF++WDERL+TV+A++ Sbjct: 61 AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L++M+VSR KR +++DS AA+ ILQ LDR+S L Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154 >gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021] gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C] gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C] Length = 165 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 89/155 (57%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF E IAAFIIGLP+NM+GSEGPR +TRAFV NM + K +PFV WDERL+TV+A++ Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNMGE-KTDIPFVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LI+M+VSRKKR +++DS AA+ ILQ LDR++ L Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASL 154 >gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43] gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43] Length = 162 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 86/158 (54%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ +EDL L P Q IA +DLGTK IGLA+SD R A PRP + R+K T A++LL Sbjct: 1 MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + A +IGLP+NM+GSEGPRV +TRAFV NMI+ K +PFVFWDERL+TV+A++ Sbjct: 61 TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIE-KTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI+M+VSRKKR +++DS AA+ ILQ LDR+ L ++ Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAA 157 >gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83] gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83] Length = 165 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF E IAAFIIGLP+NM+GSEGPR +TRAFV M + K +PFV WDERL+TV+A++ Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTMGE-KTDIPFVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LI+M+VSRKKR +++DS AA+ ILQ LDR++ L Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASL 154 >gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894] Length = 144 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145 L++M+VSR KR +++DS AA+ IL Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144 >gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae WSM419] gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419] Length = 165 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/155 (55%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR + R K A LL Sbjct: 1 MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +AAF+IGLP+NM+GSEGPR +TRAFV M +R +P V WDERL+TV+A++ Sbjct: 61 FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LI+M+VSRKKR ++DS AA+ ILQ LDR++ L Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALL 154 >gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1] gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1] Length = 160 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS++ IE+L K+ +P+A +DLGTK IG+AISD G FA PR +L RKK + A LL Sbjct: 1 MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++ EN I+GLP+NM+GSEGPR STRAFV N+ +PF FWDERL+TV+A++ Sbjct: 61 HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNL-QPLTKLPFAFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 LI+M+VSR KR Q++DS AAA ILQ LDR+ L + G Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159 >gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C] Length = 163 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++ Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMATY-TEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 +L++M++SR KR ++DS AAA ILQ LDRI L+S+ Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157 >gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498] Length = 163 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I +++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++ Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 +L++M++SR KR ++DS AAA ILQ LDRI L S+ Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157 >gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476] gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476] Length = 156 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 112/159 (70%), Gaps = 5/159 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+ Sbjct: 1 MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSA 118 EN+ +IGLPLNMNGS G RV +TRAFV NM K Y +PFVFWDERL+T++A Sbjct: 61 KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM---KAYTKIPFVFWDERLSTIAA 117 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 ++ L++MNVSR KR +++DS AAA ILQ L+RI L S Sbjct: 118 ERSLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156 >gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup] gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup] Length = 159 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 85/162 (52%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+ Sbjct: 1 MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSA 118 EN+ IIGLPLNMNGS G RV +TRAFV NM K Y +PFVFWDERL+T++A Sbjct: 61 KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM---KAYTKIPFVFWDERLSTIAA 117 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ++ L++MNVSR KR ++DS AAA ILQ L+RI +G Sbjct: 118 ERSLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159 >gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3] Length = 163 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A I+GLP+NMNGS GPRV +T+ FV NM +PF+FWDERL+T++A++ Sbjct: 61 EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNMAT-YTKIPFIFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 ++MN+SR KR ++DS AAA ILQ LDRI L+S+ Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157 >gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse] gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse] Length = 159 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I +++ L P Q IA +DLG K IG+A+SD G F++PR L RKK+T A L+ Sbjct: 1 MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLPLNMNGS GPR +TR FV+NM + +PFVFWDERL+T++A++ Sbjct: 61 QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR ++DS AAA ILQ L+RI L +G Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159 >gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2] gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2] Length = 162 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR +++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMM 154 >gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13] gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 162 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR +++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMM 154 >gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330] gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365] gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445] gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC 23457] gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str. 513] gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str. 686] gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis M163/99/10] gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis B2/94] gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915] gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis M292/94/1] gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33] gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3 str. Ether] gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1] gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94] gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9] gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99] gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4 str. 40] gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513] gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99] gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1] gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330] gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365] gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445] gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915] gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4 str. 40] gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99] gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513] gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9] gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1] gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28] gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis M5-90] Length = 162 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR ++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154 >gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1 str. 9-941] gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis biovar Abortus 2308] gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19] gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6 str. 870] gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3 str. Tulya] gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4 str. 292] gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9 str. C68] gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC 8038] gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870] gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292] gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str. 86/8/59] gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str. Tulya] gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196] gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1 str. 9-941] gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold containing [Brucella melitensis biovar Abortus 2308] gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19] gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC 8038] gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292] gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str. 86/8/59] gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870] gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str. Tulya] gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196] Length = 162 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR ++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154 >gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506] gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506] Length = 165 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 78/162 (48%), Positives = 116/162 (71%), Gaps = 5/162 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS++ IE+ ++LK +P+A +DLGTK IG+A+SD RFA+PR L RKK TQ A L Sbjct: 1 MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSA 118 + + + ++A ++GLPLNM+GS GPR +T+AF N +D + P + WDERL+TV+A Sbjct: 61 AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNYAALDER---PILLWDERLSTVAA 117 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ++ L+D+++SRKKR +++DS AAA+ILQ VLDR++ L G Sbjct: 118 ERNLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159 >gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum WSM2075] gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum WSM2075] Length = 168 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ IE L L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL Sbjct: 1 MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ Sbjct: 61 ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI+M+ SR KR K+DS AAA ILQ VLDR+ L +S Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157 >gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1] gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I +++ L P Q IA +DLGTK IG+A+SD G F++PR L R+K T A L+ Sbjct: 1 MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLPLNMNGS GPR +TR FV NM + +PFVFWDERL+T++A++ Sbjct: 61 KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR ++DS AAA ILQ L+RI L +G Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159 >gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1 str. 16M] gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840] gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M] gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella melitensis bv. 1 str. 16M] gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840] gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M] gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 162 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+ ++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR ++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154 >gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1] gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1] gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 162 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FA+PRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR ++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154 >gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73] gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73] Length = 164 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A +IGLP+NM+GS GPRV +T+ FV NM +PFVFWDERL+T +A++ Sbjct: 61 KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNMA-MYTKIPFVFWDERLSTTAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L+++++SR KR ++DS AAA ILQ LDRI L S+ Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157 >gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 165 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ IE++ L+P + IA +DLGTK IGLA+SD G FAHPRP + R K + A LL Sbjct: 1 MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR +++DS AAA ILQ LDR+ + S Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157 >gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis KC583] gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis KC583] Length = 161 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I+ ++ L Q IA +DLGTK IG+AISD F++PRP + RKK T AL+L+ Sbjct: 1 MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLP+NM+GS GPRV +TR FV N I +PF+FWDERL+T++AQ+ Sbjct: 61 KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSN-IAMYTKIPFIFWDERLSTIAAQR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++++VSR KR ++DS AAA ILQ LDRI L + Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157 >gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 156 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ +E+ ++ + IA +DLGTK IGLA+SD G+RFA PR L R K T A L+ Sbjct: 1 MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +NI +IGLPLNM+GSEGPR +TRAF+ N R P + WDERL+TV+A++ Sbjct: 61 AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRNY-SRFDERPVLLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ +VSRKKR +++DS AA+ ILQ LDR+S L S Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156 >gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 168 Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+ IE+L L + +A +DLG K IG+A+SD FAHPRP ++R+K + A LL Sbjct: 1 MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFV WDERL+TV+A++ Sbjct: 61 ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QMSDLPFVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI+M+ SR+KR K+DS AAA ILQ VLDR+ L +S Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHAS 157 >gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1] Length = 159 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I ++ L P Q IA +DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ +IGLP+NM+GS GPRV +TR FV NM +PFVFWDERL+T++AQ+ Sbjct: 61 QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR ++DS AAA ILQ VLDRI L ++G Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159 >gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026] gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026] Length = 162 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 104/155 (67%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+N +G+ GPRV +TRAFV M + FVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI M+VSR KR ++DS AAA ILQ LDR+ + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154 >gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188] gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188] Length = 165 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ IE++ L+ Q IA +DLGTK IGLA+SD G FAHPRP + R K + A LL Sbjct: 1 MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR ++DS AA+ ILQ LDR+ + S Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRS 157 >gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099] gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099] Length = 166 Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 1/146 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL+ + EN+ A Sbjct: 5 LADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVA 64 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ LI+M+ SR KR Sbjct: 65 IGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAERTLIEMDFSRAKR 123 Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158 K+DS AAA ILQ VLDR+ L+S+ Sbjct: 124 AGKIDSAAAAFILQGVLDRLQSLDSA 149 >gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56] Length = 121 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+ Sbjct: 1 MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 IL 122 L Sbjct: 120 TL 121 >gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4] gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4] Length = 160 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63 L ++D + L PN + +DLGTK IGLA+SD GR A P + RKK TQ A +LL Sbjct: 7 LSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLDIC 66 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + ++ ++GLPLNM+GSEGPR +TRAF N+ +K +P +WDERL+T + + L+ Sbjct: 67 AKQEVSGLVLGLPLNMDGSEGPRAQATRAFCRNL-SQKTELPITYWDERLSTAAVTRTLL 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + + SR KR + VD +AAA ILQ LDR+ + +S Sbjct: 126 EADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160 >gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum SL003B-26A1] gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum gilvum SL003B-26A1] Length = 166 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63 L +ED V +L P + +DLGT+ IGLA+SD GR A P + R+K T A +LL Sbjct: 7 LSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLKIC 66 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + ++GLPLNM+GSEGPRV +TRAF N+ + K +P +WDERL+T + + LI Sbjct: 67 AEHRVGGLVLGLPLNMDGSEGPRVQATRAFARNLAE-KTDLPITYWDERLSTAAVTRTLI 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 + + SR +R + VD +AAA ILQ LDR+ +L S+ Sbjct: 126 EADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161 >gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris BL2] gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2] Length = 161 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/155 (49%), Positives = 102/155 (65%), Gaps = 1/155 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + DL + P Q + IDLGTK IGLA+SD RR A P + R K ++ A+ L+ Sbjct: 5 ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + A IIGLPLNM+GS+GPRV +TRAFV ++ V PFV+WDERL+T + + L Sbjct: 65 AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVRSL-SALVSKPFVYWDERLSTAAVTRSL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 ID +VSR KR + VD +AAA ILQ VLDR+ +E+ Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEA 158 >gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare Y25] gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare Y25] Length = 156 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +ED +L P + + +DLGT IG+A+SD A P + RKK + A LL I Sbjct: 6 VEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALLKIIAA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 NIA ++GLPLNM+GSEGPR STRAF N+ R +P V+WDERL+TV+A++ L++ Sbjct: 66 RNIAGIVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTDLPIVYWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SRK+R + +D +AA ILQ VLDR+ L Sbjct: 125 DTSRKRRDEVIDHVAAGFILQGVLDRLRHL 154 >gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062] gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062] Length = 165 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 1/155 (0%) Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63 L +ED +L + + IDLGTK IGLA++D GR+ A P + RKK TQ LL Sbjct: 7 LSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLDLC 66 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + +IGLPLNM+G+EGPR +TRAFV N+ +K +P +WDERL+T + + LI Sbjct: 67 HEHGVFGLVIGLPLNMDGTEGPRCQATRAFVRNLA-QKTEIPITYWDERLSTAAVTRTLI 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + + SR +R + VD +AA ILQ LDR+++ +S Sbjct: 126 EADRSRARRAELVDKMAATYILQGFLDRVNYGGTS 160 >gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614] gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614] Length = 162 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63 L +ED V ++ + +DLGTK IGLA+SD G A P + RKK T A +LL+ Sbjct: 7 LSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLTIC 66 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + + ++GLPLNM+GSEGPR +TRAFV N+ +K +P +WDERL+T + + L+ Sbjct: 67 AKQGVGGIVLGLPLNMDGSEGPRAQATRAFVRNL-SQKTDLPITYWDERLSTAAVTRTLL 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + + SR KR VD +AAA ILQ LDR+ F+ G Sbjct: 126 EADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162 >gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii DFL-11] gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii DFL-11] Length = 161 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63 L +ED + ++ + +DLGTK IGLA+SD GR A P + RKK T A +LL Sbjct: 7 LSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLKIC 66 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + + ++GLPLNM+G+EGPRV +TRAF N+ K +P FWDERL+T + + L+ Sbjct: 67 NEQGVGGLVLGLPLNMDGTEGPRVQATRAFTRNLAP-KTDLPMTFWDERLSTAAVTRTLL 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + + SR KR + VD +AAA ILQ LDR+ F+ Sbjct: 126 EADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157 >gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 307] gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 307] Length = 162 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 1/145 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D +L P P+A +DLGTK IG+A+SD G A P + R K AL L + Sbjct: 8 DFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLFEITSHRA 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 IA ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++ L++ + Sbjct: 68 IAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLTDLPITYWDERLSTVAAERALLEADT 126 Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152 SRK+R + +D++AA++ILQ +LDR+ Sbjct: 127 SRKRRAEVIDNVAASIILQGMLDRL 151 >gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter sphaeroides 2.4.1] gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides ATCC 17029] gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides WS8N] gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter sphaeroides 2.4.1] gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC 17029] gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides WS8N] Length = 160 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L + Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIAAE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++ Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + SRK+R + +D +AA ILQ VLDR+ +L G Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159 >gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides KD131] gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131] Length = 160 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L + Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIADE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++ Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + SRK+R + +D +AA ILQ VLDR+ +L G Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159 >gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus] Length = 159 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ++D +L +A +DLGTK IG+A+SD R A P + R+K T +L+ + Sbjct: 6 MDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLMKTVAE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ +++ Sbjct: 66 RQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAERAMLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ++SRK+R + VD +AA ILQ LDR++ L + G Sbjct: 125 DLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159 >gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53] gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53] Length = 158 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ED L + +A +DLGT IG+A+SD R A P + R+K T A L T Sbjct: 7 EDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLFEITTHR 66 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 IA ++GLP NM+GSEGPR +TRAF N +++ +P FWDERL+TV+A++ +++ + Sbjct: 67 MIAGLVLGLPRNMDGSEGPRCQATRAFARN-LEKLTPLPITFWDERLSTVAAERAMLEAD 125 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLES 157 +SRK+R +++D+IAA+ ILQ +LDR+ LE+ Sbjct: 126 MSRKRRAERIDNIAASYILQGMLDRLRHLEA 156 >gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222] gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222] Length = 158 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +E ++L +A +DLGTK IG+A+SD R A P + R K T A LL + Sbjct: 6 VETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALLKIVQD 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N+ +R +P FWDERL+TV+A++ L++ Sbjct: 66 RALVGLVLGLPRNMDGSEGPRAQSTRAFARNL-ERLTPLPITFWDERLSTVAAERALLEG 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SRK+R + +D +AA ILQ LDR+ FL Sbjct: 125 DTSRKRRAEVIDQVAAGYILQGALDRLRFL 154 >gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b] gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b] Length = 158 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 +L PI +DLGTK IG+AISD A P + RKK + A LL T +A Sbjct: 12 TLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLLEIATQREVAGL 71 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ L++ + SRK+ Sbjct: 72 VLGLPRNMDGSEGPRCQSTRAFARNL-EPLTELPITFWDERLSTVAAERALLEADTSRKR 130 Query: 132 RIQKVDSIAAALILQEVLDRISFLESSK 159 R + +D++AA+ ILQ VLDR++ + +++ Sbjct: 131 RAEVIDNVAASYILQGVLDRLTHMRAAQ 158 >gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2] gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2] Length = 160 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59 MS+L IE+ +L + +A +D G K IG+A+SD R A P + R K T A L Sbjct: 1 MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 IT IA I+GLP NM+GSEGPR +TRAF N+ R +P FWDERL+TV+A Sbjct: 61 AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFARNL-SRLTPLPIGFWDERLSTVAAT 119 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + L++ + SRK+R + +D +AA ILQ VLDR++ + G Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160 >gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC 17100] gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC 17100] Length = 156 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 + DL+ LK ++ + +D+GTK +GLA+SD R+ A P + R K T A++LL+ Sbjct: 8 LPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVKLLAHCKA 67 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + + ++GLP+N++G+EGPR STRAFV ++ +P FWDERL+T +A+++L++ Sbjct: 68 QGVGGLVVGLPVNLDGTEGPRAQSTRAFVRSL-GALTDMPMAFWDERLSTAAAERVLLEA 126 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154 + SRK+R + +D +AAA ILQ LDR+++ Sbjct: 127 DASRKRRAEVIDKMAAAYILQGALDRVNY 155 >gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003] gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003] Length = 159 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 101/155 (65%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ++D +L +A +DLGTK IG+A+SD R A P + R+K + +L+ + Sbjct: 6 MDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLMKTVAE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ +++ Sbjct: 66 RQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAERAMLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ++SRK+R + VD +AA ILQ LDR++ L + G Sbjct: 125 DLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159 >gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101] gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101] Length = 161 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 95/155 (61%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I D +L P Q + +DLG K IG+A++D A P + RKK A L I Sbjct: 6 ITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLTQIIAD 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I I+GLP NM+GSEGPR STRAF N D+ V +P FWDERL+TV+A++ L++ Sbjct: 66 RRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEKALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + SRK+R + +D +AA+ ILQ VLDR+S L + G Sbjct: 125 DTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159 >gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium KLH11] gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium KLH11] Length = 154 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 1/151 (0%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 + ED +L P + +DLG K IG+A+SD R A P + RKK T + L+ +T Sbjct: 5 VFEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLIEIVT 64 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 I ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ L++ Sbjct: 65 DREIGGIVLGLPRNMDGSEGPRCQSTRAFARNLT-RLTEVQIGFWDERLSTVAAEKALLE 123 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + +RK+R Q +D +AA ILQ LDR+ FL Sbjct: 124 ADTTRKRRGQVIDHVAAGYILQGALDRLRFL 154 >gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217] gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217] Length = 160 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I +L + I +DLGTK IG+A+SD A P + R K T+ A L +T Sbjct: 6 IAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLFDIMTG 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++ I+GLP NM+GSEGPR STRAF N+ R P +WDERL+TV+A++ L++ Sbjct: 66 RDVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTDAPIGYWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + +RK+R+Q +D+IAAA ILQ VLDR+S + + Sbjct: 125 DATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156 >gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 157 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE+ L P + +A +DLGTK IG+A+SD A P + RKK TQ A L+ + Sbjct: 6 IEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLVEILRQ 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 IA ++GLP NM+GSEGPR STRAF N + P FWDERL+TV+A++ L++ Sbjct: 66 REIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SR+KR + +D +AA+ ILQ VLDR+ L S+ Sbjct: 125 DTSRRKRAELIDHVAASYILQGVLDRLRNLRSA 157 >gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3] gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3] Length = 154 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +E+ +L P +A +DLG K IG+A+SD R A P + RKK A LL+ + Sbjct: 6 VEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALLAIVEQ 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 IA ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ L++ Sbjct: 66 REIAGIVLGLPRNMDGSEGPRCQSTRAFARNL-SRLTEVAITFWDERLSTVAAEKALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + +RK+R + +D +AAA ILQ LDR+ L Sbjct: 125 DTTRKRRSEVIDHVAAAYILQGALDRLRNL 154 >gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035] gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035] Length = 160 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I +L + I +DLGTK IG+A+SD A P + R K T A LL + Sbjct: 6 IAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLLQIVAG 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + I+GLP NM+GSEGPR STRAF N+ R VP +WDERL+TV+A++ L++ Sbjct: 66 REVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTEVPIGYWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + +RK+R+Q +D+IAAA ILQ VLDR+ + + Sbjct: 125 DATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156 >gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 154 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 1/149 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 E+ +L P Q + +DLG K IG+A+SD R A P + RKK + LL T Sbjct: 7 EEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLLEIATDR 66 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 I ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ L++ + Sbjct: 67 EIGGIVLGLPRNMDGSEGPRCQSTRAFARNL-SQLTDIPIGFWDERLSTVAAKKALLEAD 125 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFL 155 +RK+R Q +D +AA ILQ LDR+ FL Sbjct: 126 TTRKRRGQVIDHVAAGYILQGALDRLRFL 154 >gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica subsp. indica ATCC 9039] gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica ATCC 9039] Length = 165 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P Q + IDLGTK IGL++SD RR A P + R K T+ A LL+ ++AAF+ Sbjct: 15 LGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLALADQFDVAAFV 74 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLPLNM+GS GPRV +T AFV ++ PF +WDERL+T + + LI + SR KR Sbjct: 75 IGLPLNMDGSAGPRVQATEAFVRSL-SGLTSRPFCYWDERLSTAAVTRDLIAQDASRAKR 133 Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158 VD +AAA ILQ LDR++++ + Sbjct: 134 AAVVDKLAAAFILQGALDRLAWVHET 159 >gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510] gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510] Length = 178 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 5/156 (3%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 I +EDL L NQ + +D+GTK +GLA++DPG A P L R K TQ A EL Sbjct: 2 IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSA 118 I I ++GLPLNM+GSEGPR S RAF +N+++R + + FWDERL+T + Sbjct: 62 IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121 Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++ +I + +++RK+R + VD +AAA ILQ LD ++ Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLA 157 >gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium Y4I] gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium Y4I] Length = 157 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 + ED +L P + +DLGTK IG+A+SD A P + RKK + A LL I Sbjct: 5 VFEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQ 64 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 +I+ ++GLP NM+G+EGPR STRAF N++ + +P FWDERL+TV+A++ L++ Sbjct: 65 ARDISGILLGLPRNMDGTEGPRCQSTRAFARNLM-QLTDLPISFWDERLSTVAAEKALLE 123 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + +RK+R + +D +AA+ ILQ LDR+ L++ Sbjct: 124 ADTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157 >gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca bermudensis HTCC2601] gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601] Length = 158 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IED +L ++ +A +DLGTK IG+A+SD A P + RKK T A LL + Sbjct: 6 IEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLLEILVK 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEGPR STRAF N R P FWDERL+TV+A++ L++ Sbjct: 66 REIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SR KR + +D +AA+ ILQ LDR+ L ++ Sbjct: 125 DTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157 >gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242] gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242] Length = 157 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE++ + L + +DLGTK IGLA+SD RR A P + R K +Q A LL Sbjct: 8 IEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQD 67 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID 124 ++ A + GLPLNM+G+ GPR +TRAF+ N+ RK+ +PFVFWDERL+T + + LI Sbjct: 68 FDVQALVFGLPLNMDGTAGPRAQATRAFMRNL--RKLTPIPFVFWDERLSTAAVTRELIA 125 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SR KR + VD +AAA ILQ LDR+S L Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSRL 156 >gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides ATCC 17025] gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC 17025] Length = 160 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE+ + +L + + +DLGTK IG+A++D RR A P + R K T+ A L + Sbjct: 6 IEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLRAITAE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N+ + + +P +WDERL+TV+A++ LI+ Sbjct: 66 RGLVGIVLGLPRNMDGSEGPRAQSTRAFARNL-SQVLPLPIGYWDERLSTVAAERALIEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SRK+R + +D +AA ILQ VLDR+ +L Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWL 154 >gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 238] gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 238] Length = 158 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 95/151 (62%), Gaps = 1/151 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D +L P+A +DLGTK IG+A+ D G A P + R K A L Sbjct: 8 DFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLFEITAHRE 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 +A ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++ L++ + Sbjct: 68 VAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLSDLPITYWDERLSTVAAERALLEADT 126 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESS 158 SRK+R + +D+IAA++ILQ +LDR+ ++++ Sbjct: 127 SRKRRAEVIDNIAASIILQGLLDRLRNIKAA 157 >gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37] gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37] Length = 156 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 3/151 (1%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE +L P Q + +DLGTK IG+A+SD R A P + RKK A L + I Sbjct: 6 IEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQALIAG 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID 124 I I+GLP NM+G+EGPR STRAF N ++ P +WDERL+TV+A++ L++ Sbjct: 66 RRIGGLILGLPRNMDGTEGPRCQSTRAFARNFA--ALWDGPIGYWDERLSTVAAEKALLE 123 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + +RK+R + +D +AA+ ILQ LDR+ FL Sbjct: 124 ADTTRKRRAEVIDHVAASYILQGALDRLRFL 154 >gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b] gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b] Length = 160 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +E+L L + +D+GTK IGLA+SD RR A P + R K T A L + + Sbjct: 8 VEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVAQ 67 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 +IAA I+GLPLNM+GSEGPR +TRAF+ N+ R + + FWDERL+T + + L+ Sbjct: 68 FDIAALIVGLPLNMDGSEGPRAQATRAFMRNLGAR-FALRYAFWDERLSTAAVTRELLAQ 126 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + SR KR VD +AAA ILQ LDR+ L S Sbjct: 127 DASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158 >gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14] gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14] Length = 168 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLGTK IG+A+SDP RR A L RK T A LL+ N A F++GLP+N Sbjct: 26 LVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLAIAGERNAAGFVLGLPIN 85 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEGPR STRAF N+ R + WDERL+TV+ ++ LI M++SR KR + +D Sbjct: 86 MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERELIGMDMSRAKRAKVIDE 144 Query: 139 IAAALILQEVLDRISFL 155 AA ILQ LDR++ L Sbjct: 145 HAAIFILQGALDRLAVL 161 >gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516] gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516] Length = 157 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ED +L + + +DLGT+ IG+A+SD R A P + RKK A LL+ Sbjct: 7 EDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALLAICEHR 66 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 I ++GLP NM+GSEGPR STR F N+ +R +P FWDERL+TV+A++ L++ + Sbjct: 67 AITGIVLGLPRNMDGSEGPRCQSTRGFARNL-ERLTPLPIAFWDERLSTVAAERALLEAD 125 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFL 155 SR++R + +D +AA +ILQ +LDR+ L Sbjct: 126 TSRRRRGEVIDHVAAGVILQGMLDRLRHL 154 >gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase Length = 163 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLGTK IG+A+SDP RR A L RK T A LL+ N A F++GLP+N Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLAIAGERNAAGFVLGLPIN 80 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEGPR STRAF N+ R + WDERL+TV+ ++ LI M++SR KR + +D Sbjct: 81 MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERELIGMDMSRAKRAKVIDE 139 Query: 139 IAAALILQEVLDRISFL 155 AA ILQ LDR++ L Sbjct: 140 HAAIFILQGALDRLAVL 156 >gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45] gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45] Length = 157 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D + +L P Q + +DLG K IG+A+SD + A P + RKK A L I Sbjct: 8 DFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLAEIIAKRR 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++GLP NM+GSEGPR STRAF N DR +P +WDERL+TV+A++ L++ + Sbjct: 68 IGGLVLGLPRNMDGSEGPRCQSTRAFARN-FDRLTPLPITYWDERLSTVAAERALLEADT 126 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFL 155 +RK+R + +D +AA ILQ +LDR+ + Sbjct: 127 TRKRRAEVIDHVAAGYILQGLLDRLQVM 154 >gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium HTCC2150] gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium HTCC2150] Length = 156 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 4/154 (2%) Query: 5 LIEDLVK---SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 +IED V+ SLK PI ++D G K IG+A SD R A P + R K T A LL Sbjct: 3 IIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERLLE 62 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + F++GLP NM+GSEG R TRAF N+ +R + FWDERL+TV+A++ Sbjct: 63 LAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFARNL-ERLTEINIAFWDERLSTVAAERA 121 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI+ + SR KR Q +D +AA ILQ LDR++ L Sbjct: 122 LIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155 >gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2] gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2] Length = 158 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 97/152 (63%), Gaps = 1/152 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 E V ++ +A +DLGT IG+A+SD R A P + RKK A +LL T Sbjct: 7 ETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLLELTTHR 66 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 + ++GLP NM+GSEGPR +TRAF N+ ++ +P FWDERL+TV+A++ L++ + Sbjct: 67 LVTGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAERALLEAD 125 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 SRK+R + +D +AA ILQ +LDR++ L+++ Sbjct: 126 TSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157 >gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum USDA 110] gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110] Length = 167 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+ Sbjct: 11 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 70 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L Sbjct: 71 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 129 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 I M+VSR KR + +D AA ILQ LDR++ L + G Sbjct: 130 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167 >gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36] gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36] Length = 161 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I D +L P Q + +DLG K IG+A+SD A P + RKK A L I Sbjct: 6 ITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLSEIIAA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++ L++ Sbjct: 66 RGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + SR++R + +D +AA ILQ VLDR+ +++ Sbjct: 125 DTSRRRRAEVIDHVAAGYILQGVLDRLRVIKA 156 >gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase Length = 161 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+ Sbjct: 5 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L Sbjct: 65 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 I M+VSR KR + +D AA ILQ LDR++ L + G Sbjct: 124 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161 >gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1] gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1] Length = 161 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I D +L P Q + +DLG K IG+A+SD A P + RKK A L I Sbjct: 6 ITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLSEIIAA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++ L++ Sbjct: 66 RGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + SR++R + +D +AA ILQ VLDR+ +++ Sbjct: 125 DTSRRRRAEVIDHVAAGYILQGVLDRLRVIKA 156 >gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2] gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2] Length = 160 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 1/135 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SDP RR A + RK T A LL+ N F++GLPLNM+ Sbjct: 23 GLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLALAAGRNACGFVLGLPLNMD 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPRV STRAF N R +P WDERL+T + ++ LI +VSR KR + +D A Sbjct: 83 GSEGPRVQSTRAFARNFA-RLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHA 141 Query: 141 AALILQEVLDRISFL 155 A ILQ LDR++ L Sbjct: 142 AIYILQGALDRLATL 156 >gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisA53] gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisA53] Length = 163 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + +DLGTK IG+A+SDP RR A ++RK T A LL+ T ++G Sbjct: 17 PTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLALATERKAVGLVLG 76 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+NM+ SEGPR STRAF N+ R +P WDERL+T + ++ LI +VSR KR + Sbjct: 77 LPINMDASEGPRAQSTRAFARNLA-RLTELPIGLWDERLSTAAVERELIANDVSRAKRAK 135 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA ILQ LDR++ L S G Sbjct: 136 VIDEHAAIFILQGALDRLAVLNRSTG 161 >gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3] gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3] Length = 159 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L + DL + P+ P +DLG K IG+A+SD R A P + + K T A +L Sbjct: 1 MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + ++A +IGLP NM+G+EGPR S RAF N+ +R V FWDERL+T + ++ Sbjct: 61 KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFARNL-ERLRPVNIAFWDERLSTSAVER 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 LI D++++RK+R Q VD AAA ILQ LDR+ Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRV 152 >gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597] gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597] Length = 161 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 2/155 (1%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +E+ +L P + IA +D G K IG+A+SD A P + R+K Q A L + + Sbjct: 6 VEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALSALLAA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILI 123 I ++GLP NM+GSEGPR STRAF N+ R + +P FWDERL+TV+A++ L+ Sbjct: 66 RTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAAERALL 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + + SR++R + +D +AA ILQ LDR+ L+ + Sbjct: 126 EADTSRRRRAEVIDHVAAGYILQGALDRLRHLKGA 160 >gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 157 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ED +L + +D G K IG+A+SD A P + RKK T + LL I+ Sbjct: 7 EDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIISGR 66 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 +I I+GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++ + Sbjct: 67 DINGIILGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEAD 125 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 SRK+R + +D +AA+ ILQ LDR+ ++S Sbjct: 126 TSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157 >gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149] gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149] Length = 163 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 3/154 (1%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D + +L P + + +DLGT+ IG+A+SD A P + R+K T A L+ + Sbjct: 8 DFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLVEIASERR 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N+ ++ + +P FWDERL+TV+A++ L++ Sbjct: 68 LGGLVLGLPRNMDGSEGPRCQSTRAFARNL-EKTIGSDLPITFWDERLSTVAAERALLEA 126 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 + SRK+R + +D +AA ILQ LDRI + + + Sbjct: 127 DTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160 >gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. ORS278] gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278] Length = 161 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLGTK IG+A+SDP RR A + RK A LL+ + F++GLP+N Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLPIN 80 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEGPR STRAF N+ +P WDERL+T + ++ LI M+VSR KR + +D+ Sbjct: 81 MDGSEGPRAQSTRAFARNLAG-LTDLPIGLWDERLSTAAVERELIGMDVSRAKRAEVIDT 139 Query: 139 IAAALILQEVLDRISFLESS 158 AA ILQ LDR++ L S Sbjct: 140 HAAIFILQGALDRLTTLRRS 159 >gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040] gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040] Length = 157 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ED +L + +D G K IG+A+SD A P + RKK T + LL I Sbjct: 7 EDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGR 66 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 +I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++ + Sbjct: 67 DINGILLGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEAD 125 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 SRK+R + +D +AA+ ILQ LDR+ + SS Sbjct: 126 TSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157 >gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW] gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 188 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I + +L SL N + +DLG K IGLA+SDPG A P + R K TQ A EL Sbjct: 1 MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTV 116 + ++ A ++GLP+NM+G+EGPR S R F ++ R F FWDERL+T Sbjct: 61 RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + ++++I +++RK+R + VD +AAA ILQ LDR+ +++ G Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164 >gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193] gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193] Length = 157 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ED +L +A +D G K +G+AISD A P + RKK T A L + Sbjct: 6 FEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLFEIVKK 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEGPR TRAF N+ R +P FWDERL+TV+A++ L++ Sbjct: 66 REIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-SRLTELPIGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SRK+R + +D +AA+ ILQ LDR+ L++ Sbjct: 125 DTSRKRRAELIDHVAASYILQGALDRMRHLKND 157 >gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114] gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 163 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 3/154 (1%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D + +L + + +DLGT+ IG+A+SD A P + R+K T A L + Sbjct: 8 DFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLSDIVAQRR 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N+ D+ + +P FWDERL+TV+A++ L++ Sbjct: 68 LGGLVLGLPRNMDGSEGPRCQSTRAFARNL-DKSIGSDLPITFWDERLSTVAAERALLEA 126 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 + SRK+R + +D +AAA ILQ LDRI + + + Sbjct: 127 DTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160 >gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans DS-1] gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans DS-1] Length = 182 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 1/147 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 + +L L N+ + +DLG+K IGLA+SD A P + R K T A L++ Sbjct: 34 LAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIALAKE 93 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + A + GLPLNM+G+EGPR STRAF+ N+ ++ +P FWDERL+T++ + L+D Sbjct: 94 HDAGALVFGLPLNMDGTEGPRCQSTRAFIRNL-EKLTDLPIAFWDERLSTMAVTRTLLDA 152 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152 + SR +R + VD +AAA ILQ LDR+ Sbjct: 153 DASRARRAELVDKMAAAYILQGALDRL 179 >gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571] gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571] Length = 185 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 1/145 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 + ++ +L + +DLGTK IG+A DP RR A + R K TQ A L+ + Sbjct: 35 LAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMVLASE 94 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 AF++GLPLNM+GSEGPRV ++RAF N R +P FWDERL+TV+ ++ LI Sbjct: 95 RKAVAFVLGLPLNMDGSEGPRVQASRAFARNFA-RLSGLPIAFWDERLSTVAVERALISA 153 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 +VSR KR +D AAA ILQ +D Sbjct: 154 DVSRAKRANVIDQHAAAFILQGAID 178 >gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1] gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1] Length = 161 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLGTK IG+A+SDP RR A + RK A LL+ + + F++GLP+N Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAISSERKVVGFVLGLPIN 80 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEGPR STRAF N+ + +P WDERL+T + ++ LI M+VSR +R + +D+ Sbjct: 81 MDGSEGPRAQSTRAFARNLAN-LTDLPIGLWDERLSTAAVERELIGMDVSRARRAEVIDT 139 Query: 139 IAAALILQEVLDRISFLESS 158 AA ILQ LDR++ L S Sbjct: 140 HAAIFILQGALDRLATLRRS 159 >gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 158 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I + ++ +A +DLGT IG+A+SD A P + RKK + A LL Sbjct: 6 ITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLLEIAKD 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ L++ Sbjct: 66 RELGGLVLGLPYNMDGSEGPRCQSTRAFARNL-EKLTDLPISFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + +RK+R + +D +AA ILQ VLDR + L +S Sbjct: 125 DTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157 >gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius nubinhibens ISM] gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius nubinhibens ISM] Length = 158 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 5 LIEDLVKSLKPNQP----IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 +I D +S P + +DLGTK +G+A+SD R A P + R+K T A L Sbjct: 1 MIHDAFESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQ 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I ++ ++GLP NM+GSEGPR STRAF N + +P FWDERL+TV+A++ Sbjct: 61 ELIAARSVVGVVLGLPRNMDGSEGPRCQSTRAFARNFA-QLTDLPIGFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D +AA+ ILQ LDR+ + S Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157 >gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11] gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11] Length = 157 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 1/141 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 PIA +D G K +G+AISD A P + RKK T A +L + I A ++GLP Sbjct: 18 PIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLFEIVKAREIGALLLGLPR 77 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGPR TRAF N+ + +P FWDERL+TV+A++ L++ + SRK+R + +D Sbjct: 78 NMDGTEGPRCQKTRAFARNL-SQLTDLPIGFWDERLSTVAAERALLEADTSRKRRSEVID 136 Query: 138 SIAAALILQEVLDRISFLESS 158 +AA+ ILQ LDR+ L++ Sbjct: 137 HVAASYILQGALDRMRHLKTG 157 >gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255] gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255] Length = 156 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 1/146 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 + L + + +DLGTK IG+A+SD A PR + RKK L + + + Sbjct: 9 EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+GLP+NM+GSEGPR +TRAF N+ R +P FWDERL++V+A++ +++ ++ Sbjct: 69 TGGIILGLPMNMDGSEGPRCQATRAFARNLSSR-CDIPITFWDERLSSVAAERAMLEADM 127 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 SR KR +D +AA+ ILQ LDRI Sbjct: 128 SRAKRADNIDHVAASFILQGALDRIG 153 >gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6] gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6] Length = 157 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE+ +++ +A +D G K IG+AISD A P + RKK T A L Sbjct: 6 IEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLFEITKA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEGPR TRAF N+ ++ +P FWDERL+TV+A++ L++ Sbjct: 66 REIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-EKLTELPITFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SRK+R + +D +AA+ ILQ LDR+ ++ Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRMRHMKDG 157 >gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107] gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10] gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10] gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107] Length = 157 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 2/145 (1%) Query: 15 PN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 PN PIA +D G K +G+AISD A P + RKK T A L + + A ++ Sbjct: 14 PNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLFEIVKDREVGALLL 73 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+G+EGPR TRAF N+ + +P FWDERL+TV+A++ L++ + SRK+R Sbjct: 74 GLPRNMDGTEGPRCQKTRAFARNLA-KLTELPIGFWDERLSTVAAERALLEADTSRKRRA 132 Query: 134 QKVDSIAAALILQEVLDRISFLESS 158 + +D +AA+ ILQ LDR+ +++ Sbjct: 133 EVIDHVAASYILQGALDRMRHIKAG 157 >gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506] gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506] Length = 160 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + + L + +DLGTK IG+A SDP RR A + RK+ T A +LS Sbjct: 5 ILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGRVLSL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 ++GLP+NM+GSEGPR ++RAF N+ R +P + WDERL+T + ++ + Sbjct: 65 AAARGAVGLVLGLPVNMDGSEGPRAQASRAFARNL-SRLTELPIMLWDERLSTAAVERDM 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 I ++SR +R + VD AAA ILQ LDR+ F+ + Sbjct: 124 IATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160 >gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas diminuta ATCC 11568] gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas diminuta ATCC 11568] Length = 154 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L + +L + PN P +DLG IG+++SD GR A P + + K +Q A +L Sbjct: 1 MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + ++A +IGLPLNM+G+EGPR S RAF N+ +R V F DERL+T + ++ Sbjct: 61 RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFARNL-ERFRPVNVAFQDERLSTTAVER 119 Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152 LID ++++RK+R VD AAA ILQ LDR+ Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRL 152 >gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase Length = 155 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL Sbjct: 1 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + ++GLP+ M+G EGPR S R+F N+ R +P +WDERL+T + + Sbjct: 61 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L++ + SRK+R + VD +AAA ILQ +LD Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 149 >gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum AMB-1] gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum AMB-1] Length = 159 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL Sbjct: 5 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + ++GLP+ M+G EGPR S R+F N+ R +P +WDERL+T + + Sbjct: 65 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 123 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L++ + SRK+R + VD +AAA ILQ +LD Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 153 >gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5] gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5] Length = 204 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 89/153 (58%), Gaps = 1/153 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + D P + +DLGTK IG+A+SDP RR A + RK T+ A ELL Sbjct: 47 ILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLKI 106 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 A F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++ L Sbjct: 107 SGERACAGFVLGLPINMDGSEGPRAQSTRAFARNFA-KLTELAIGLWDERLSTAAVEREL 165 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + +VSR +R + +D AA ILQ LDR++ L Sbjct: 166 LANDVSRARRAEVIDEHAAIFILQGALDRLTAL 198 >gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens DSM 19370] gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens DSM 19370] Length = 155 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 2/148 (1%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I + +L + +D GTK IG+A+ D G RFA P L R+K Q E++ I Sbjct: 6 IGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIVGIIAQ 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++ +IGLPLNM+GSE PR + RA N+ D + +P + WDER TT +A++ +I Sbjct: 66 RSVRGIVIGLPLNMDGSESPRSQAARAMARNLAD--LALPTLLWDERWTTQAAERAMIAQ 123 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++SR KR +++D+ AAALILQ +D ++ Sbjct: 124 DMSRAKRAERIDAHAAALILQGAIDALA 151 >gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis HTCC2594] gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594] Length = 167 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 1/133 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++DLGTK IG A SD G RFA L R + + +L +++ N+A ++GLP NM+ Sbjct: 27 ALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRNVAGLVLGLPRNMD 86 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++SR KR +K+DS A Sbjct: 87 GSEGPRAQASRAYARNLAE-AFGLPVLLWDERWSTQSAESAMIGQDMSRAKRAEKIDSHA 145 Query: 141 AALILQEVLDRIS 153 AA+ LQ LD ++ Sbjct: 146 AAIFLQAALDTLA 158 >gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Magnetospirillum magnetotacticum MS-1] Length = 159 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K T+ A +LL Sbjct: 5 MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +++ ++GLP+ M+G EGPR S R+F N+ R +P +WDERL+T + + Sbjct: 65 AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 123 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L++ + SRK+R + VD +AAA ILQ +LD Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 153 >gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256] gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256] Length = 152 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 2/146 (1%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D +L +A +D+GTK IG+A+ D G FA P +VRK+ + L + + + Sbjct: 8 DFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALKALVAGQA 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + ++GLPLNM+GS+ PR STRAF N+ + +P + WDER +T + ++ +I +V Sbjct: 68 VVGLVVGLPLNMDGSDSPRTQSTRAFARNLA--PLGLPVLLWDERWSTAAVERAMIAADV 125 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 SR KR +++DS AAA ILQ +D ++ Sbjct: 126 SRAKRAERIDSAAAAFILQGAIDAMT 151 >gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2] gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2] Length = 165 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 1/153 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + + P + +DLGTK IG+A+SDP RR A + RK T+ A ELL Sbjct: 10 ILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAELLRI 69 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++ L Sbjct: 70 AGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAVEREL 128 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 I +VSR +R + +D AA ILQ LDR++ L Sbjct: 129 IANDVSRARRAEVIDEHAAIFILQGALDRLAAL 161 >gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans JCM 2831] gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans JCM 2831] Length = 170 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 IDLGTK IGLA+SD GR+ A P + R K T A L + + ++GLPLNM+ Sbjct: 21 GIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLAALCRQHAVGGLVVGLPLNMD 80 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPRV STRAF+ N+ + +P VF+DERL+T + LI+ + SR +R Q VD +A Sbjct: 81 GSEGPRVQSTRAFMRNLAP-ILPLPHVFFDERLSTAVVTRALIEADASRARRGQLVDKLA 139 Query: 141 AALILQEVLD 150 AA ILQ LD Sbjct: 140 AAYILQGCLD 149 >gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC 15264] gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC 15264] Length = 173 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 2/151 (1%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 +L + DL + P+ +DLG IG+A SD R A P + + K T A L Sbjct: 11 VLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFRL 70 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + ++A +IGLP+NM+G+EGPR S RAF N+ DR V FWDERL+T + ++ L Sbjct: 71 MDHRKVSALVIGLPVNMDGTEGPRAQSCRAFARNL-DRIRPVNVAFWDERLSTSAVERFL 129 Query: 123 ID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152 ID +++SRK+R VD AAA ILQ LDR+ Sbjct: 130 IDELDLSRKRRAGVVDRTAAAWILQGALDRV 160 >gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum HLK1] gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum HLK1] Length = 156 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ + DL PN P+ +DLG K IG+A+SD R A P + + K T A L Sbjct: 1 MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLP+NM+G+EG R S RAF N++ + +P FWDER++T++ + Sbjct: 61 KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +L+ + +++R +R VD +AAA ILQ LDR+ L Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156 >gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium bathyomarinum JL354] Length = 162 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 L ++L + +DLGTK IG+A+ D G RFA L R K + EL I +I Sbjct: 14 LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +IGLP NM+GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++VS Sbjct: 74 RGIVIGLPRNMDGSEGPRAQASRAYARNLAE-AFGLPVLLWDERWSTKSAEDAMIGLDVS 132 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R+KR +++D+ AA +ILQ +D Sbjct: 133 RRKRAERIDAEAATIILQGAID 154 >gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter alkaliphilus HTCC2654] gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium HTCC2654] Length = 155 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77 +A +D G K IG+A+SD R+ A P + R KK TQ A L++ + I+ ++GLP Sbjct: 19 LAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLGLPR 78 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGPR TRAF N + R P FWDERL+TV+A++ L++ + SR KR +D Sbjct: 79 NMDGTEGPRCQKTRAFARN-LSRLTERPITFWDERLSTVAAERALLEADTSRAKRSGVID 137 Query: 138 SIAAALILQEVLDRISFL 155 +AA ILQ LDR+ L Sbjct: 138 HVAAGYILQGALDRMRHL 155 >gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17] gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17] Length = 154 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 3/130 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GTK IG A+ D G FA P + R K T+ L++ I + + +IGLPLN++ Sbjct: 23 GLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEALIAMIAQQGVKGLVIGLPLNLD 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSE PR STRAF N D P + WDER +TV+ ++ +I+ ++SR KR +++D++A Sbjct: 83 GSESPRSQSTRAFARNCAD---LGPILLWDERWSTVAVERTMIEQDMSRAKRAERIDNLA 139 Query: 141 AALILQEVLD 150 AA ILQ +D Sbjct: 140 AAHILQAAID 149 >gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A] gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A] Length = 166 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLGT+ IG+A+SDP RR A + RK T A LL+ + FI+GLP+N Sbjct: 21 LVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLAIAGERHAKGFILGLPIN 80 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEGPR STRAF N+ R + WDERL+T + ++ LI +++SR +R + +D Sbjct: 81 MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTAAVERELIGLDMSRARRARVIDE 139 Query: 139 IAAALILQEVLDRISFLESSKG 160 AA ILQ LDR++ S G Sbjct: 140 HAAIFILQGALDRLAAQRRSSG 161 >gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae DFL 12] gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12] Length = 163 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/140 (41%), Positives = 85/140 (60%), Gaps = 1/140 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +DLGT IG+A+SD A P + RKK A L + + ++ I+GL Sbjct: 18 GRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLEALMDARDVGGLILGL 77 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+GSEGPR STRAF N R+ +P FWDERL+TV+A++ L++ + SR +R + Sbjct: 78 PRNMDGSEGPRAQSTRAFARNFTARRP-IPIAFWDERLSTVAAERALLEADTSRARRAEV 136 Query: 136 VDSIAAALILQEVLDRISFL 155 +D +AA+ ILQ LDR + Sbjct: 137 IDHVAASYILQGALDRFGHM 156 >gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5] gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5] Length = 160 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SDP R+ A + R T A +L+ + F++GLPLNM+ Sbjct: 23 GLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLALAAERSACGFVLGLPLNMD 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR STRAF N R +P WDERL+T + ++ LI +VSR KR + +D A Sbjct: 83 GSEGPRAQSTRAFARNFA-RLTELPIGLWDERLSTAAVERALIANDVSRAKRAKIIDEHA 141 Query: 141 AALILQEVLDRISFL 155 A ILQ LDR+ L Sbjct: 142 AIYILQGALDRLVAL 156 >gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15] gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus NA1000] gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus NA1000] Length = 156 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L IED +L + +D G K IG+A+SD R A P + + K ++ A +L Sbjct: 1 MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + + Sbjct: 61 KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120 Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LID ++SRK+R + VD +AA ILQ L+R+ L Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156 >gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS 2060] gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS 2060] Length = 163 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 84/135 (62%), Gaps = 1/135 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IGLA+SD GRR A P + R K T A +L + +IGLPLNM+ Sbjct: 22 GLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKLAGIARQHGVGGLVIGLPLNMD 81 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR STRAFV N+ + +P + +DERL+T + + L++ + SR +R VD +A Sbjct: 82 GSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGDLVDKLA 140 Query: 141 AALILQEVLDRISFL 155 AA ILQ LD ++ L Sbjct: 141 AAYILQGCLDVLAGL 155 >gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46] gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46] Length = 168 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 1/139 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IGLA+SD GRR A P + R K T A L + + ++G PLNM+ Sbjct: 22 GLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRLAAIAAEHGVGGLVVGHPLNMD 81 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR STRAFV N+ + +P + +DERL+T + + L++ + SR +R + VD +A Sbjct: 82 GSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGKLVDKLA 140 Query: 141 AALILQEVLDRISFLESSK 159 AA ILQ LD ++ LE + Sbjct: 141 AAYILQGCLDVLAGLEPEE 159 >gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255] gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255] Length = 163 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 1/159 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 S+L + + + +DLGTK IG+A+SDP RR A + RK T A LL+ Sbjct: 4 SVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 FI+GLP+NM+GSEGPR STRAF N+ R WDERL+T + ++ Sbjct: 64 IAGERRAEGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDFAIGLWDERLSTAAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 LI +++SR +R + +D AA ILQ LDR++ + G Sbjct: 123 LIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161 >gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756] gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756] Length = 156 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L IED +L P+ +D G K IG+A+SD R A P + + K ++ A L Sbjct: 1 MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + + Sbjct: 61 KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LI + +V+RK+R + VD +AA ILQ L+R+ L Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156 >gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase Length = 160 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 92/154 (59%), Gaps = 2/154 (1%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +++ ++ P + + +DLGTK IG+A+SD A + RKK A L I Sbjct: 6 LDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAK 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILI 123 + I+GLP NM+GSEGPR +TRAF N+ R ++ FWDERL+TV+A++ LI Sbjct: 66 HEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALI 125 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + SRK+R + +D++AA+ ILQ LDR+ L + Sbjct: 126 AADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159 >gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas palustris CGA009] gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas palustris TIE-1] gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1] Length = 160 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 1/139 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A SDP R+ A + RK T A LL+ F++GLPLNM+ Sbjct: 23 GLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMD 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR STRAF N+ R +P WDERL+T + ++ LI +VSR KR + +D A Sbjct: 83 GSEGPRAQSTRAFARNL-SRLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHA 141 Query: 141 AALILQEVLDRISFLESSK 159 A ILQ LDR++ L ++ Sbjct: 142 AIFILQGALDRLAALRRAE 160 >gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21] gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21] Length = 162 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%) Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85 TK IG+A D G RFA + R K T +L +T +IA ++GLP NM+G+EGP Sbjct: 32 TKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTARSIAGLVVGLPRNMDGTEGP 91 Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145 R ++RA+ N+ R +P + WDER +T SA+ +I ++SR KR +K+DS AAA+IL Sbjct: 92 RAQASRAYAKNLA-RAFGLPVLLWDERWSTSSAESAMIGQDMSRAKRAEKIDSHAAAVIL 150 Query: 146 QEVLDRIS 153 Q +D ++ Sbjct: 151 QGAIDTLA 158 >gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31] gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31] Length = 164 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L I + ++ PI +D G K IG+A+SD A P + + K ++ A L Sbjct: 1 MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A +IGLP+NM+G+EG R S RA N++ + ++P FWDERL+T + + Sbjct: 61 QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +LI + +V+RK+R + VD +AAA ILQ L+R+ + + G Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161 >gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum marinum IMCC1322] Length = 159 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I + D+ +S+ Q + +D+G K IGLA+SD G + A P L R K T EL Sbjct: 1 MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +N+ ++G P+NM+GS GPR STR F + ++ R VP F DERL+T + + Sbjct: 61 KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFAYALM-RIRDVPVFFQDERLSTQAVES 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 +I +++R KR + D++AA ILQ LD I Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151 >gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense MSR-1] Length = 163 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL I +L +L + + +DLGTK IGLA+SD A P + R K T+ A L Sbjct: 1 MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A ++GLP+ M+G+EG R STRAF N++ + +P VFWDERL+T + + Sbjct: 61 AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLGLR-DLPIVFWDERLSTAAVTR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L++ + SR +R + VD +AAA ILQ LD Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALD 149 >gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum C19] gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum C19] Length = 157 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I +L L + +DLG K IG+A+SD A P + + K T A L Sbjct: 1 MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + A +IGLP+NM+G+EGPR S RAF N++ R VP FWDER ++ + + Sbjct: 61 HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLL-RLRDVPIAFWDERWSSAAMNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 LI + ++SR KR + +D AAA ILQ LDRI Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRI 152 >gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2] gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2] Length = 176 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 + D+ L P + +DLGTK IG+A DP RR A + R K T A LL+ Sbjct: 13 LADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLALAAE 72 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 F++GLPLNM+ SEGPR ++RAF N+ R +P WDERL+T + ++ LI Sbjct: 73 RRAVGFVLGLPLNMDASEGPRAQASRAFARNLA-RLTALPIALWDERLSTAAVERALISA 131 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153 +VSR +R VD AAA IL+ L +S Sbjct: 132 DVSRARRAAVVDQHAAAFILEGALGFLS 159 >gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1] gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1] Length = 145 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD A + RKK A L I + I+GLP NM+ Sbjct: 6 GLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGLPRNMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 GSEGPR +TRAF N+ R ++ FWDERL+TV+A++ LI + SRK+R + +D+ Sbjct: 66 GSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSEVIDA 125 Query: 139 IAAALILQEVLDRISFLES 157 +AA+ ILQ LDR+ L + Sbjct: 126 VAASYILQGALDRLRHLRA 144 >gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium HTCC2083] gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium HTCC2083] Length = 160 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I+D +L + + +DLGTK IG+++SD A P + R K T A L I Sbjct: 6 IDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLEQIIEA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEGPR STRAF N+ R+ +P +WDERL+TV+A++ L+ Sbjct: 66 RYIGGIVLGLPFNMDGSEGPRCQSTRAFARNLA-RQSELPITYWDERLSTVAAERALLAA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SR++R + +D++AAA ILQ LDR+S + Sbjct: 125 DASRRRRAEVIDNVAAAYILQGALDRLSHI 154 >gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5] gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5] Length = 158 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ + A +L Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 E AA IIGLPL+M+GS GP + R + H I R+ +P DERL++ + + Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAH-AIARETGLPVAMMDERLSSAAVNR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 LI+ +V+R KR +VD+ AA+ +LQ LD Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALD 149 >gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum AIU301] gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum AIU301] Length = 158 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ +A +L Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 E AA IIGLPL+M+GS GP + R + H I R+ +P DERL++ + + Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAH-AIARETGLPVAMMDERLSSAAVNR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 LI+ +V+R KR +VD+ AA+ +LQ LD Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALD 149 >gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1] gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1] Length = 160 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPLNM+ Sbjct: 16 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD 75 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR S+R+F N+ + +P +F+DERL+T + + LI+ + SR +R + VD +A Sbjct: 76 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 134 Query: 141 AALILQEVLD 150 AA ILQ LD Sbjct: 135 AAYILQSCLD 144 >gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum CM4] gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum CM4] Length = 165 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPLNM+ Sbjct: 21 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD 80 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR S+R+F N+ + +P +F+DERL+T + + LI+ + SR +R + VD +A Sbjct: 81 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 139 Query: 141 AALILQEVLD 150 AA ILQ LD Sbjct: 140 AAYILQSCLD 149 >gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503] gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503] Length = 158 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P P+ +D G+K IG+A+S P RR A P + R K + A L + + IIG Sbjct: 13 PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +PLNM+GSEGPR S R F N+ R +P +WDERL++V+A++ L+ + SR +R + Sbjct: 73 VPLNMDGSEGPRAQSARTFGRNLSQRG-PLPVAYWDERLSSVAAERALLATDTSRARRAE 131 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA ILQ LDR++ Sbjct: 132 VIDAHAATHILQGALDRLA 150 >gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814] gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814] Length = 150 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 6/154 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL ++ L P P+ +D GTK IG+A +D R A P + + K AL L Sbjct: 1 MAILELD----QLPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56 Query: 61 SFITTENIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 + + + +IGLP+NM+GS GPRV + RA N+++++ VP FWDERL+T + + Sbjct: 57 FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + L++ + SR KR + +D +AAA ILQ +DR+S Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLS 149 >gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4] gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens DM4] Length = 160 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPLNM+ Sbjct: 16 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPLNMD 75 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR S+R+F N+ + +P +F+DERL+T + + LI+ + SR +R + VD +A Sbjct: 76 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 134 Query: 141 AALILQEVLD 150 AA ILQ LD Sbjct: 135 AAYILQSCLD 144 >gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB18] gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB18] Length = 163 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 1/138 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SDP RR A ++ A LL N F++GLP+NM+ Sbjct: 23 GLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLLLAGQRNAVGFVLGLPINMD 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR STRAF N R +P WDERL+T + ++ LI +VSR KR + +D A Sbjct: 83 GSEGPRAQSTRAFARNFA-RLTDLPIGLWDERLSTSAVERELIANDVSRAKRAKVIDEHA 141 Query: 141 AALILQEVLDRISFLESS 158 A ILQ LDR++ L ++ Sbjct: 142 AIFILQGALDRLTVLNAA 159 >gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001] gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001] Length = 165 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD GR+ A P + R K T A +++ + +IGLPLNM+ Sbjct: 21 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIVALCAAHGVGGLVIGLPLNMD 80 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR S+R+F N+ + +P +F+DERL+T + + L++ + SR +R + VD +A Sbjct: 81 GSEGPRAQSSRSFARNLR-PLLPLPVLFFDERLSTAAVTRTLLEADASRARRGEVVDKLA 139 Query: 141 AALILQEVLD 150 AA ILQ LD Sbjct: 140 AAYILQSCLD 149 >gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10] gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10] Length = 151 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 6/155 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+ +EDL P+ P+ ++D G+K IG+A R + P + R K T A + Sbjct: 1 MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A ++GLP+NM+GSEGPRV S RA N++ R +P F DERL+T A++ Sbjct: 56 ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMARNLM-RLRDLPIAFQDERLSTFEAEE 114 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI V R KR +D+ AAA ILQ LDR+ L Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEML 149 >gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens AM1] gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens AM1] Length = 165 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPLNM+ Sbjct: 21 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPLNMD 80 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR S+R+F N+ + +P +F+DERL+T + + L++ + SR +R + VD +A Sbjct: 81 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLLEADASRARRGELVDKLA 139 Query: 141 AALILQEVLD 150 AA ILQ LD Sbjct: 140 AAYILQSCLD 149 >gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170] gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170] Length = 161 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I ++ +L P +P+ +DLGT+ IG+A SD A P + R+K T EL Sbjct: 1 MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + A ++GLP+ M+GSEGPR +TRAF N++ + +P + WDERL+T + + Sbjct: 61 ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALR-DLPVLLWDERLSTAAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 L+ + +++R +R + VD AAA ILQ LD Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALD 150 >gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC 51888] gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC 51888] Length = 166 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 1/133 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK +GLA+SD R A + R K T A LL+ T + ++GLP N++ Sbjct: 32 GIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALATEHGVTGLVLGLPRNLD 91 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+EGPR +TRA N+ ++ +P + WDERLTT A+++LID + SRK+R + +D +A Sbjct: 92 GTEGPRAQATRALARNL-NKLSPLPILLWDERLTTAEAERMLIDADQSRKRRGEVIDKLA 150 Query: 141 AALILQEVLDRIS 153 A +ILQ LDR+ Sbjct: 151 ATIILQSALDRLG 163 >gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48] gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48] Length = 167 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 11/163 (6%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL I +L +L P + + +DLG K IG+A+SD P + + K TQ A LL Sbjct: 1 MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----------VPFVFWD 110 + + +IGLP+NM+G+EGPR S RAF N++ +P FWD Sbjct: 61 LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120 Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 ER ++ + LI + +++R KR + +D AAA ILQ LDRI Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRI 163 >gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130] gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130] Length = 160 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 IDLGTK IGLAISD + P + R K T +L F T E ++ +IGLPLNM+ Sbjct: 24 GIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFATAERVSGIVIGLPLNMD 83 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR S+RAF N+ R +P WDE L+T A + + ++ K K+D++A Sbjct: 84 GSEGPRAQSSRAFARNL-SRLTELPIQLWDESLSTSEALEGVSAKKAAQMKADGKLDALA 142 Query: 141 AALILQEVLDRISFL 155 A+LILQ D + L Sbjct: 143 ASLILQGCCDAMRAL 157 >gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1] gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1] Length = 156 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 2/130 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GTK IGLA+ D G A P + R K ++ + L +F+ + + +IGLPLN++ Sbjct: 23 GLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIALAAFMEQQQVKGVVIGLPLNLD 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSE PR ++RAF N+ D + +P +FWDER +T + + L++ + SR +R + VD +A Sbjct: 83 GSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAVTRTLLEADASRARREELVDKLA 140 Query: 141 AALILQEVLD 150 A+ ILQ +D Sbjct: 141 ASYILQGAID 150 >gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans DSM 12444] gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans DSM 12444] Length = 155 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 2/146 (1%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 ++ +L + +D GTK IG+A+ D RFA + R K ++ + + Sbjct: 8 EMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERG 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + +IGLPLNM+GSE PR RA N+ D + +P + WDER TT +A++ +I+ + Sbjct: 68 VKGIVIGLPLNMDGSESPRSQGARAMARNLED--LGLPILLWDERWTTQAAERAMIEQDF 125 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 SR KR +++DS AAALILQ +D ++ Sbjct: 126 SRAKRAERIDSHAAALILQGAIDALA 151 >gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S] gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S] Length = 156 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%) Query: 1 MSILLIEDLV--KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 MSIL + ++L + +D+GTK IG+A+ D G A P + R K ++ + Sbjct: 1 MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T + Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + L++ + SR +R + VD +AA+ ILQ +D Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAID 150 >gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1] gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1] Length = 160 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/134 (44%), Positives = 80/134 (59%), Gaps = 1/134 (0%) Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85 TK IG+A SDP RR A + RK T A LL+ F++GLPLNM+GSEGP Sbjct: 28 TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87 Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145 R STRAF N+ + +P WDERL+T + ++ LI +VSR KR + +D AA IL Sbjct: 88 RAQSTRAFARNLA-KLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146 Query: 146 QEVLDRISFLESSK 159 Q LDR++ L ++ Sbjct: 147 QGALDRLAALRRAE 160 >gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1] gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1] Length = 151 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D +L +A +D+GT+ IG+A+ D G A P ++R K + A +L + + + Sbjct: 8 DFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLRALVAAQL 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + +IGLPLN++GS+ PR S RAF N+ +P + WDER +T + + L+D + Sbjct: 68 VKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTRTLLDADA 125 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 SR +R + VD +AAA ILQ +D Sbjct: 126 SRARRAELVDKLAAAYILQGAID 148 >gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199] gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199] Length = 168 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I DL + L P + +D GTK IG+A+SD R A P + R+K ++ A E+L Sbjct: 1 MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + NI F++GLPLNM+G+EGPR STR ++ R +P VF DER++T + ++ Sbjct: 61 ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLRH-DLPTVFQDERMSTQAVER 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 +I + +++R +R + +DS AAA ILQ LD Sbjct: 120 AMISEADLTRGQRKKSIDSAAAAWILQAALD 150 >gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114] gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114] Length = 156 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 +D + + N I ID G K IGL++SDP ++ A P +V KK Q EL + I Sbjct: 10 KDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELNNIIREY 69 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 I +IG P+NM+G+ GPR S R F N I + +P WDERL++ A ++ D++ Sbjct: 70 EIKGIVIGNPINMDGTSGPRSQSARDFAQN-ISKNTKLPITLWDERLSSEGAFNLMGDLD 128 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 ++ K+ + +D AAA ILQ LD Sbjct: 129 INSSKKSKNLDQHAAAFILQGYLD 152 >gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM 13941] gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM 13941] Length = 146 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 93/141 (65%), Gaps = 5/141 (3%) Query: 13 LKPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIA 69 +K ++P + ++D+G +RIG+A+SDP R A P +R K TAL+ + S I ++A Sbjct: 1 MKIDEPGRVMALDVGEQRIGVALSDPTRTLATPL-TTIRAKPRATALKRIASLIREHDVA 59 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 A ++GLPL M+G GP+ + FV + R + +P F DERLTTV+A++++ID+ + Sbjct: 60 ALVVGLPLTMSGDVGPQAALVQQFVEEL-RRAIAIPLTFVDERLTTVAAERMMIDLKLKP 118 Query: 130 KKRIQKVDSIAAALILQEVLD 150 ++R ++D +AA++ILQ+ LD Sbjct: 119 EQRKARIDEVAASIILQDFLD 139 >gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58] gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58] Length = 169 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 2/130 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GTK IGLA+ D A P + R K + + L +FI + + +IGLPLN++ Sbjct: 35 GMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIGLAAFIDQQQVKGVVIGLPLNLD 94 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS PR ++RAF HN+ D + +P + WDER +T + + L++ + SR +R + VD +A Sbjct: 95 GSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAVTRTLLEADASRARRDELVDKLA 152 Query: 141 AALILQEVLD 150 A+ ILQ +D Sbjct: 153 ASYILQGAID 162 >gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM 12261] gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM 12261] Length = 138 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G KRIG+A+SDP FA F+ K + L+L + + N+ +IG PL Sbjct: 4 ILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGNPLR 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 NG+ GP + + R ++ V WDER TT AQQ+L++ NVSRKKR +KVD Sbjct: 62 TNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEKVDQ 121 Query: 139 IAAALILQEVLD 150 +AAALILQ LD Sbjct: 122 LAAALILQNYLD 133 >gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase Length = 163 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 4/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 +A +D+GTK IGLA+ D A P + RKK T LELL F+ + + +IGLPL Sbjct: 29 LAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFT-LDLELLRQFVEKQQVKGLVIGLPL 87 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N++GS+ PR S RAF N+ + +P + WDER +T + + L++ + SR +R + VD Sbjct: 88 NLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADASRARRSEVVD 145 Query: 138 SIAAALILQEVLD 150 +AAA ILQ +D Sbjct: 146 KMAAAYILQGAID 158 >gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum Ice1] gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum Ice1] Length = 149 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SD A + R ++ L + T + + GLP N Sbjct: 3 IMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR R F +++++K+ +P +WDERLTTV+AQ+ LI ++SR KR Q VD Sbjct: 63 MNGTYGPRAEGIRKF-GSLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVVDK 121 Query: 139 IAAALILQEVLDRISFLESSK 159 +AA LILQ +D + L + + Sbjct: 122 LAAVLILQNYMDAKAHLAAKE 142 >gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 179 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 +A +D+GTK IGLA+ D A P + RKK T LELL F+ + + +IGLPL Sbjct: 45 LAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFT-LDLELLRQFVEKQQVKGLVIGLPL 103 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N++GS+ PR S RAF N+ + +P + WDER +T + + L++ + SR +R + VD Sbjct: 104 NLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADASRARRSEVVD 161 Query: 138 SIAAALILQEVLDRISFL 155 +AAA ILQ +D + Sbjct: 162 KMAAAYILQGAIDSFAMF 179 >gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM 20745] gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM 20745] Length = 143 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 3/142 (2%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + S +P + + ++D+G +R+G+A+SD A P + K+ L++ I + Sbjct: 1 MASSSQPGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD--RLVALIERYDP 58 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 IIGLPL M+G EGP+ +TRAF + R V P +FWDERLTT A Q LI+ Sbjct: 59 ERIIIGLPLGMSGREGPQAAATRAFAQQLRGR-VDRPIIFWDERLTTFMADQSLIEAGHR 117 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R +R Q VD++AAALILQ LD Sbjct: 118 RARRKQHVDAVAAALILQSYLD 139 >gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp. IMCC9063] gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp. IMCC9063] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 D K + + ID G + +G+AI DP A P + KK+ EL I N Sbjct: 11 DFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDKIIIENN 70 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++G P+NM+G+EGPR ST+ FV N+I + ++P WDERL++V A + + D+ + Sbjct: 71 IKGIVVGHPINMDGTEGPRSQSTKDFVKNII-KHTHLPVTLWDERLSSVGAFKSMQDLGI 129 Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152 + + K+D +AA ILQ +D + Sbjct: 130 NSSSKKDKLDENSAAFILQGFIDYL 154 >gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769] gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769] Length = 153 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + I +L +L+P Q + ID G K IG+A+SD A P + R+K++ A E+ Sbjct: 1 MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++ A + GLPL+++GS GP + R ++ N + ++V +P WDERL++ + + Sbjct: 61 ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWMMN-LSQQVGLPAAMWDERLSSSAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 +LI D++++R++R Q VD +AAA ILQ LD Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150 >gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1] Length = 149 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 13/143 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA----- 70 I +D GTK +G+A+SDP + A P + RK K+ QT L + I E AA Sbjct: 3 ILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQT-LARIEAILEEYGAAGERDR 61 Query: 71 ---FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++G P NMN SEG R +T+AF ++ +R+ + V WDERLTTV A++IL+D V Sbjct: 62 IELIVLGYPKNMNNSEGDRCEATQAFKEDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 R+ R +D +AAA+ILQ LD Sbjct: 121 RRENRKTYIDKMAAAVILQNYLD 143 >gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1] gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1] Length = 175 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G Sbjct: 38 IMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 97 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R Sbjct: 98 PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 156 Query: 136 VDSIAAALILQEVLD 150 +D +AAALILQ LD Sbjct: 157 IDKVAAALILQGYLD 171 >gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii ACS-065-V-Col13] Length = 139 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A + + RKK + LL I ++ ++GLP N Sbjct: 4 IMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV +++ ++ V V+ DER+TT+ ++ +LIDM V R+ R Q +D Sbjct: 64 MNNTIGPQSMKVMSFV-DLLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQYIDK 122 Query: 139 IAAALILQEVLDR 151 IAA ILQ LDR Sbjct: 123 IAATFILQTYLDR 135 >gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf. saccharolyticum K10] Length = 140 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G Sbjct: 3 IMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R Sbjct: 63 PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AAALILQ LD Sbjct: 122 IDKVAAALILQGYLD 136 >gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing bacterium SS3/4] Length = 144 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SD A + RK K+ +T + I + ++GL Sbjct: 3 ILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+ +EG RV T+AF M++R+ +P +WDERLTTV+A+QIL++ V R+ R Sbjct: 63 PKNMDNTEGERVEKTKAF-GEMLERRTGLPVHYWDERLTTVAAEQILMESGVRRENRKAV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 122 IDKVAAGLILQGYLD 136 >gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 141 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLG KRIG+A SDP A L RK + + L + ++GLPLN Sbjct: 3 IMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ T+ F + + +P FWDERL++ SA+++L++ ++SRK+R + +D Sbjct: 63 MNGTMGPKALETQEFAR-ALQEALKIPVDFWDERLSSKSAERVLLEADLSRKRRKELIDK 121 Query: 139 IAAALILQEVLD 150 IAA ILQ LD Sbjct: 122 IAAVHILQAYLD 133 >gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 138 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G +RIG+A+SD A + R+K + + + ++GLP N Sbjct: 3 IMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR AF ++ K+ +P WDERLTTVSAQ+ L+D +VSRKKR VD Sbjct: 63 MNGTIGPRGEICMAFAEDL-RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVDK 121 Query: 139 IAAALILQEVLDRISF 154 +AA+LILQ LD S Sbjct: 122 MAASLILQNYLDSKSI 137 >gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797] gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797] Length = 162 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D GTKR+G+AIS + A P R+ + Q LLS IT ++GLP++M+ Sbjct: 23 GLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRCKGLVVGLPVHMS 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG + R F N + + +P +WDER ++ +A++IL+++N+SR KR +D +A Sbjct: 83 GDEGQKAKEARQF-GNWVSQFAEIPVRYWDERYSSATAEEILVNLNMSRNKRKAYLDKLA 141 Query: 141 AALILQEVLD 150 A +ILQ LD Sbjct: 142 AQIILQSFLD 151 >gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC 39073] gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC 39073] Length = 140 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+GTK IG+A+SDP A + R+ + L + + ++GLP N Sbjct: 3 IMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNGS GP+ + RAF ++ +V +P F+DERLTTV+A ++L++ ++SR++R Q +D Sbjct: 63 MNGSLGPQAEAVRAFARHL-QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVIDQ 121 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LDR+ Sbjct: 122 VAATYILQGYLDRLG 136 >gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260] gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260] Length = 144 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 4/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++DLGT R+G+A+SDP RRFA P L ++ Q EL + T + ++GLP Sbjct: 6 VLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENWIQRVREL---VVTHQVTLVLVGLPT 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G+ GP V R + + VP F+DER TT AQQ L+ +VSRK R Q+VD Sbjct: 63 RTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQRVD 122 Query: 138 SIAAALILQEVLD 150 +AAA++LQ LD Sbjct: 123 KVAAAVLLQGFLD 135 >gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii HTCC2633] gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii HTCC2633] Length = 162 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 L +L P P+ +ID GTK +G+A+S+ R P + R+K TQ A LL+ Sbjct: 4 LDPALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERAC 63 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 I+GLPL+M+G +G R S+R+FV N++ R +P + DERL+T +A + LI+ V Sbjct: 64 VGLIVGLPLHMHGGDGRRAQSSRSFVTNLL-RLRDLPVAYQDERLSTFAATESLIEAGVK 122 Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153 R VD+ AAA+IL+ + RI+ Sbjct: 123 PSHRKDFVDAQAAAVILESAIGRIN 147 >gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing bacterium SM4/1] Length = 140 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I D G+K G+A+SDP A +VRK K+ QT + I I A ++G Sbjct: 3 IMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R Sbjct: 63 PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AAALILQ LD Sbjct: 122 IDKVAAALILQGYLD 136 >gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168] gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168] Length = 140 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G +RIG+AISD A + ++RK + + I + I+G+P N Sbjct: 3 IMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS GPR TR F+ + + + + P WDERL+TV A+++LI+ +VSRKKR +D Sbjct: 63 MDGSLGPRAEKTRDFI-DFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVIDK 121 Query: 139 IAAALILQEVLD 150 +AA++ILQ L+ Sbjct: 122 VAASIILQGYLN 133 >gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759] gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759] Length = 149 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 11/142 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITT-------ENI 68 + +D GTK +G+A+SDP A P + RK K+ QT + + I E I Sbjct: 3 VLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEKI 62 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++G P NMN +EG R +T +F N ++R+ + V WDERLTTV A++IL+D V Sbjct: 63 EKIVLGYPKNMNNTEGDRCEATVSF-KNDLERRTGLEVVLWDERLTTVEAERILMDSGVR 121 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R+ R +D +AAA+ILQ LD Sbjct: 122 RENRKTYIDKMAAAVILQNYLD 143 >gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599] gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC 100599] Length = 138 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G K IG+A+SD A + R+ + L ++ I AF++GLP N Sbjct: 4 LMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR +AF +++ + +P WDERLTT++A+++LI +VSR+KR +D Sbjct: 64 MNGTIGPRAEMCQAF-GKLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVIDK 122 Query: 139 IAAALILQEVLD 150 +AA LILQ LD Sbjct: 123 MAATLILQGYLD 134 >gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI] gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI] Length = 154 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +DLG K+IG+A+SDP A + K + ++E +S + + ++GLP Sbjct: 3 IMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLPR 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS GPR RAF + + +P WDER+TT+ A+++LI+ ++SR +R Q +D Sbjct: 63 NMNGSFGPRAERARAFAGCLAG-ALNLPVELWDERMTTLEAEKLLIEADLSRARRRQVID 121 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 122 KMAAVLILQSFLD 134 >gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514] gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514] Length = 138 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKRIGLAISD A P F++ + + L I + + ++G+P N Sbjct: 4 ILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPRN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS GP + FV + D V +P WDERLT+ A + LI +V R KR +KVD Sbjct: 64 MDGSYGPAALKVQEFVTVLKD-SVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEKVDK 122 Query: 139 IAAALILQEVLD 150 AAA++LQ LD Sbjct: 123 TAAAILLQSYLD 134 >gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus'] gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus'] Length = 136 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G KR+G+A+SD A P L + + +EL +I ++ I+G+P N Sbjct: 3 ILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPYN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS G R T+AF+ N + + +P DERLTT A+ IL++ ++SR +R +D Sbjct: 63 MDGSRGKRAEITQAFI-NFLKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVIDK 121 Query: 139 IAAALILQEVLD 150 +AAALILQ LD Sbjct: 122 LAAALILQSYLD 133 >gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453] gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453] Length = 137 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +D G +RIG+AISD A + R++ + + + + + ++GLP Sbjct: 2 KKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR F N + + +P WDERL+TVSA++ L++ +VSRKKR Q V Sbjct: 62 KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120 Query: 137 DSIAAALILQEVLD 150 D +AA+LILQ LD Sbjct: 121 DKMAASLILQNYLD 134 >gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM 20731] gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM 20731] Length = 139 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 78/132 (59%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLGT+ IG+++SD A + RK + L + E + F++G P N Sbjct: 3 IMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNGS G R ++ F + +R +P V WDERL+TV+A+++LI+ ++ RKKR + +D Sbjct: 63 MNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIIDM 122 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 123 MAAVVILQNYLD 134 >gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470] gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470] Length = 142 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 79/136 (58%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D+G++ IG+A+SD A + + + L N+ F+IG+PLN Sbjct: 3 IMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG++G R T F + +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +D Sbjct: 63 MNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVIDK 122 Query: 139 IAAALILQEVLDRISF 154 +AA +IL+ L +SF Sbjct: 123 MAAVVILEGYLQHLSF 138 >gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270] gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270] Length = 148 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G + IG+A+SDP A + R+ + + L + I ENI ++GLP NMN Sbjct: 13 ALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGLPKNMN 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + GP+ +FV + D V F V DERLTTVSA++ILI+ N+SRKKR + + Sbjct: 73 NTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKKRKKVI 132 Query: 137 DSIAAALILQEVLDR 151 D +AA ILQ LDR Sbjct: 133 DKVAATYILQSYLDR 147 >gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001] gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001] Length = 154 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A + Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 T I ++G+PL+++GS GP ++R + + + + +P WDERL++ + + Sbjct: 61 DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSE-QTGLPVCQWDERLSSSAVNR 119 Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152 +LID ++SR +R + VD +AAA ILQ LD + Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSL 152 >gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10] gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10] Length = 137 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +D G +RIG+AISD A + R++ + + + + ++GLP Sbjct: 2 KKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR F N + + +P WDERL+TVSA++ L++ +VSRKKR Q V Sbjct: 62 KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120 Query: 137 DSIAAALILQEVLD 150 D +AA+LILQ LD Sbjct: 121 DKMAASLILQNYLD 134 >gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 150 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 4/141 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 N I +D G+K +G+A+ DP A + RK K+ QT + + I I + Sbjct: 2 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMN + G R T F ++R+ +P V WDERLTTV+A ++LI+ V R+ R Sbjct: 62 LGYPKNMNNTLGERAVKTEEF-KTSLERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120 Query: 133 IQKVDSIAAALILQEVLDRIS 153 + VD IAAA+ILQ LD +S Sbjct: 121 KESVDQIAAAMILQGYLDSLS 141 >gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1] gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1] Length = 141 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 86/136 (63%), Gaps = 9/136 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPL 77 + ++D+G +RIG+A+SDP R A P +R TAL+ +L+ I + A ++GLPL Sbjct: 8 VMALDVGERRIGVALSDPTRMLASPL-TTIRAVPRSTALKRILTLIRDYQVTALVVGLPL 66 Query: 78 NMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 MNG GP+ + FV + ID +P F DERLTTV+A++++ID+ + ++R Sbjct: 67 TMNGDIGPQATLVQQFVDELRPLID----IPIFFVDERLTTVAAERMMIDLKIKPEQRRA 122 Query: 135 KVDSIAAALILQEVLD 150 ++D +AA++ILQ+ LD Sbjct: 123 RIDEVAASIILQDFLD 138 >gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596] gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596] Length = 138 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP G + +K Q E + + E + ++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + + Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKLAAVMILQSYLD 135 >gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 136 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D G + IG+A+SD A + RKK + + I ++ ++GLP NMN Sbjct: 5 GLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLPKNMN 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ GPR + F ++ R+ +P WDERLTTVSA + L++ +VSRKKR Q VD +A Sbjct: 65 GTIGPRGELCQEFA-GLLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVVDKMA 123 Query: 141 AALILQEVLD 150 AALILQ +D Sbjct: 124 AALILQGYMD 133 >gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 151 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+AISDP A + RK K+ +T + + + + ++G Sbjct: 3 IMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R + Sbjct: 63 PKNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKY 121 Query: 136 VDSIAAALILQEVLDRISFLESS 158 VD IAA ILQ LD + F + S Sbjct: 122 VDKIAAVFILQGYLDSVYFRQKS 144 >gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008] gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745] gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008] gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745] Length = 139 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D+G++ IG+A SD A + R + + L I+ + ++G+P N Sbjct: 3 IMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG++G R T FV M + + +P +WDERL+TV A++ LI +VSRKKR +D Sbjct: 63 MNGTKGERAEKTEEFVAKMKE-VIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDK 121 Query: 139 IAAALILQEVLDRISF 154 +AA +ILQ LDR+ F Sbjct: 122 MAAVVILQGYLDRLQF 137 >gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius ATCC 35098] gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius ATCC 35098] Length = 139 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A+ + RK + L I ++ ++GLP N Sbjct: 4 IMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV ++I ++V + V+ DER+TT+ ++ +LIDM+V R+ R + +D Sbjct: 64 MNNTIGPQAMRVMSFV-DLIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKYIDK 122 Query: 139 IAAALILQEVLDR 151 IAA ILQ LDR Sbjct: 123 IAATFILQTYLDR 135 >gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM 2228] Length = 135 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G KR+G+A+SD A P L + +E+ +I ++ I+G+P N Sbjct: 3 ILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPYN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++GS G R T+AF+ N ++ ++ +P DERLTT AQ IL++ +VSR+ R + +D Sbjct: 63 LDGSRGKRAEITQAFI-NFLNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVIDK 121 Query: 139 IAAALILQEVLDRI 152 +AA+LILQ LD + Sbjct: 122 LAASLILQSYLDSL 135 >gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748] gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158 str. F0412] gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748] gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158 str. F0412] Length = 139 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 1/136 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D+G++ IG+A SD A + R + + L I + ++G+P N Sbjct: 3 IMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG++G R T FV M + + +P +WDERL+TV A++ LI +VSRKKR +D Sbjct: 63 MNGTKGERAEKTEEFVEKMKE-VIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVIDK 121 Query: 139 IAAALILQEVLDRISF 154 +AA +ILQ LDR+ F Sbjct: 122 MAAVVILQGYLDRLQF 137 >gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5] gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5] Length = 137 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +D G +RIG+AISD A + R++ + + + + ++GLP Sbjct: 2 KKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR F N + + +P WDERL+TVSA++ L++ +VSRKKR Q V Sbjct: 62 KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120 Query: 137 DSIAAALILQEVLD 150 D +AA+LILQ LD Sbjct: 121 DKMAASLILQNYLD 134 >gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50] gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50] Length = 165 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 N I +D GTK +G+A+SD A P + RK K+ QT + S I + Sbjct: 20 NMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERIV 79 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMN + G R +T F ++ +R+ + + WDERL+TV A++IL+D V R+ R Sbjct: 80 LGYPKNMNNTIGERAEATEQFKEDL-ERRTGLEVILWDERLSTVEAERILMDTGVRRENR 138 Query: 133 IQKVDSIAAALILQEVLD 150 Q VD +AAA+ILQ LD Sbjct: 139 KQYVDKMAAAVILQNYLD 156 >gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM 555] gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016] gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM 555] gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 137 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A + RK + EL + + + GLP N Sbjct: 3 ILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F N+I+ + +P WDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 MNGTLGPQSEKVLKFC-NIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LDRIS Sbjct: 122 MAATYILQGYLDRIS 136 >gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-134-V-Col7a] gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-134-V-Col7a] Length = 140 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G++ IG+A SD A + R + L I+ + ++G+P N Sbjct: 3 IMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 MNG++G R T FV M ID +P FWDERL+TV A++ LI +VSRKKR Sbjct: 63 MNGTKGERAEKTEEFVEKMKAVID----LPVTFWDERLSTVMAERQLIAADVSRKKRKGV 118 Query: 136 VDSIAAALILQEVLDRISFLES 157 +D +AA +ILQ LDR+ F +S Sbjct: 119 IDKMAAVVILQGYLDRLQFSKS 140 >gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175] gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175] Length = 144 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 88/139 (63%), Gaps = 4/139 (2%) Query: 15 PNQPIASIDLGTKRIGLAISD-PGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFI 72 PN + +D+G+K +G+A+SD G + +K ++ + ++ + + + Sbjct: 2 PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKK 131 IGLP NMN +EGPRV ++R + + +++++ +P VF DERLTT+ A+++L++ NVSRKK Sbjct: 62 IGLPKNMNNTEGPRVEASRRYGAS-LEKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120 Query: 132 RIQKVDSIAAALILQEVLD 150 R Q +D +AA +ILQ LD Sbjct: 121 RKQVIDMLAAVMILQNYLD 139 >gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-049-V-Sch6] gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-049-V-Sch6] Length = 140 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G++ IG+A SD A + R + L I+ + ++G+P N Sbjct: 3 IMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 MNG++G R T FV M ID +P FWDERL+TV A++ LI +VSRKKR Sbjct: 63 MNGTKGDRAEKTEEFVEKMKAVID----LPVTFWDERLSTVMAERQLIAADVSRKKRKGV 118 Query: 136 VDSIAAALILQEVLDRISFLES 157 +D +AA +ILQ LDR+ F +S Sbjct: 119 IDKMAAVVILQGYLDRLQFSKS 140 >gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27] gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44] gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44] gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27] Length = 136 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G++ IG+A SD A + R + + L I+ + ++G+P NMN Sbjct: 2 SLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNMN 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G++G R T FV M + + +P +WDERL+TV A++ LI +VSRKKR +D +A Sbjct: 62 GTKGERAEKTEEFVAKMKE-VIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKMA 120 Query: 141 AALILQEVLDRISF 154 A +ILQ LDR+ F Sbjct: 121 AVVILQGYLDRLQF 134 >gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16] gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16] Length = 142 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 3/135 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTEN-IAAFIIGLPLN 78 +D+GTK IG+AISD A P + R + E L+ + EN + +IG P N Sbjct: 5 GLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F + +++ V V WDERLTT +AQ++LID +VSRKKR + VD Sbjct: 65 MNGTVGESATRSETFARTL-EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVDK 123 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LDR S Sbjct: 124 MAAVFILQGYLDRQS 138 >gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD 2020] gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD 2020] Length = 139 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP A + K+ + E L + + F++ Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEDKKEFGLARLEELVNQYKVDKFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN S GPRV +++A+ N+I + +P + DERLTTV A+++LI+ ++SR KR Sbjct: 60 GLPKNMNNSSGPRVEASQAY-GNLIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDRI Sbjct: 119 KKVIDKLAAQLILQNYLDRI 138 >gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA] Length = 148 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 4/141 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77 +D G+K +G+AISDP A + RK K+ +T + + + + ++G P Sbjct: 2 GLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R + VD Sbjct: 62 NMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYVD 120 Query: 138 SIAAALILQEVLDRISFLESS 158 IAA ILQ LD + F + S Sbjct: 121 KIAAVFILQGYLDSVYFRQKS 141 >gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1] gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1] Length = 156 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G+K IGLA+SD G AH R L R+ + +L+ + + A ++GLPL Sbjct: 3 VLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLPLE 62 Query: 79 MNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 ++GSEG R R F+ + + + +P WDER +T +A++ L++ +VSR KR Q Sbjct: 63 LDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKRKQ 122 Query: 135 KVDSIAAALILQEVLD 150 +D++AA ILQ LD Sbjct: 123 NIDAVAAQFILQGWLD 138 >gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1] gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1] Length = 150 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTK IG+A+SD A + R + L + ++GLPLNM+ Sbjct: 5 GLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLPLNMD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEGPR ++R F + + + +++P FWDERL+TV+A++ L++ +++R KR Q +D +A Sbjct: 65 GSEGPRAEASRKFA-DALGQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVIDQMA 123 Query: 141 AALILQEVLD 150 A ILQ LD Sbjct: 124 AQFILQGWLD 133 >gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL N1-067] gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL S4-171] Length = 138 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP G + +K Q + + + E + ++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + + Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKLAAVMILQSYLD 135 >gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus ATCC 9812] gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus ATCC 9812] Length = 139 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP G + ++ + E L + N+ F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 63 KNMNNTEGPRVEASKAY-GDQIKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 121 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 122 IDKLAAQLILQNYLDRM 138 >gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU 11154] gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU 11154] Length = 143 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76 I +D+G++ +G+A+SDP A + + + + LE L I + A ++GLP Sbjct: 3 ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135 NMN SEGPR ++R + M+ K +P F DERLTTV A+++LI+ N+SRKKR Q Sbjct: 63 KNMNNSEGPRAEASRLYAK-MVQDKFNLPIDFQDERLTTVQAERMLIEEANISRKKRKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDKIAAEFILQNYLD 136 >gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum WAL-14163] gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum WAL-14673] gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum WAL-14163] gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum WAL-14673] Length = 163 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 + +D G+K G+A+SDP A + R+ K+ +T + I I ++G Sbjct: 17 VLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCARIEELIREYQIETIVLGY 76 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G RV T AF M++R+ + + WDERLTT +A+QILI+ V R+ R Sbjct: 77 PKNMNNTSGERVEKTLAF-KEMLERRTGLSVILWDERLTTTAAEQILIESGVRRENRKAV 135 Query: 136 VDSIAAALILQEVLDRISF 154 +D +AA+LILQ LD ++ Sbjct: 136 IDKVAASLILQGYLDSLAI 154 >gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-01] gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-01] gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-03] gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-07] gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-22] gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-26] gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-32] gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-12] Length = 154 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A + Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I ++G+PL+++GS GP ++R + + + + +P WDERL++ + + Sbjct: 61 DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSE-QTGLPVCQWDERLSSSAVNR 119 Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152 +LID ++SR +R + VD +AAA ILQ LD + Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSL 152 >gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159] gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum DSM 5159] Length = 161 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 5/131 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +D+G +R+G+AISD A P L + + LE L+ I+ + ++GLP+ M Sbjct: 11 GLDVGGRRVGVAISDEMGMIASP---LATIDLDRDGLERLVELISRYDPVLIVVGLPVTM 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G EG + T+AF + +R + P VFWDERLT+ +A+++L D V RK+R + VD++ Sbjct: 68 RGREGSQAVETKAFAARLAER-IDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELVDAV 126 Query: 140 AAALILQEVLD 150 AAAL+LQ LD Sbjct: 127 AAALLLQSYLD 137 >gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 135 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP G + +K Q + + + E + ++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVIDK 120 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 LAAVMILQSYLD 132 >gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622] gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK 1622] Length = 151 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 3/131 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79 +DLGTK IG+A+SD G VR+ + L L+ + +E+ + ++GLPLNM Sbjct: 5 GLDLGTKTIGVAVSD-GLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPLNM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GSEGPR ++R F + + + + V WDERL+TV+A + L++ +VSR +R + +D + Sbjct: 64 DGSEGPRAEASRKFA-DTLAQSLGVTVELWDERLSTVAATRTLLEADVSRARRREVIDQV 122 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 123 AAQFILQGWLD 133 >gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170] gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170] Length = 139 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLG K IG+A+SDP A + RKK + +L+ I + + IIGLP N Sbjct: 4 IMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV +++ + + + DER+TT+ + Q+L+DMNV+ K R + VD Sbjct: 64 MNNTLGPQAMKVISFV-DLLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKYVDK 122 Query: 139 IAAALILQEVLD 150 IAA+ ILQ LD Sbjct: 123 IAASFILQTYLD 134 >gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7] Length = 155 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SDP A + RK K+ +T + + I ++G Sbjct: 5 IIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIVLGY 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN +EG RV T AF ++R+ + + WDER++TV+++++L++ NV R+ R Sbjct: 65 PKNMNDTEGERVEKTLAF-KEALERRTGLEVILWDERMSTVASERVLMEGNVRREDRKTY 123 Query: 136 VDSIAAALILQEVLDRISFLES 157 +D +AAA ILQ LD SF E+ Sbjct: 124 IDKMAAAFILQGYLDYQSFSEN 145 >gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus Ellin6076] gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus Ellin6076] Length = 140 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++DLG +RIGLAISDP R A P LVR ++ L + + ++G P+N Sbjct: 8 ILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLLGNPIN 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M G+EG + R F M +++ VP WDERLT+V A ++L +S +KR VD Sbjct: 68 MKGTEGRQSGWVREFATAM-EKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRAAAVDK 126 Query: 139 IAAALILQEVLD 150 ++A ++LQ LD Sbjct: 127 LSAVILLQSYLD 138 >gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10] gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10] Length = 138 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLP 76 I +D+GTK IG+A+SDP A RKK + ++ + E ++GLP Sbjct: 3 IIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP +AF ++ +P + WDERLTT +A++ LI +VSRKKR + Sbjct: 63 KNMNGTIGPSGELCQAFAESL-KEATGLPVILWDERLTTAAAEKTLISADVSRKKRKNVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 122 DKMAAVFILQGYLD 135 >gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme DSM 15981] gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+ DP A +VRK K+ +T + I I ++G Sbjct: 3 IMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R ++R+ +P + WDERLTTV+A ++L++ V R+ R + Sbjct: 63 PKNMNNTVGERAQKAEEL-KAALERRTGLPVILWDERLTTVAADRVLMESGVRREHRKES 121 Query: 136 VDSIAAALILQEVLDRISF 154 VD IAAA+ILQ LD +SF Sbjct: 122 VDQIAAAMILQGYLDNLSF 140 >gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 135 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP G + +K Q + + + E + ++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 LAAVMILQSYLD 132 >gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium cellulolyticum H10] gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10] Length = 142 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 2/136 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I ID G RIG+AISDP A + K + A+ LS I E ++ +IG P+ Sbjct: 3 ILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYPI 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++GPR T F+ + D + + WDERLTTVSA + + ++ + K+ VD Sbjct: 63 NMNGTKGPRTERTEEFIKKISDLGQF-NIIKWDERLTTVSAHRTMNELGIKASKKKGIVD 121 Query: 138 SIAAALILQEVLDRIS 153 +++A LILQ LDRI+ Sbjct: 122 TMSAVLILQGYLDRIA 137 >gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter oxydans 621H] gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter oxydans 621H] Length = 160 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 DL L+ Q + +D G+K IG+A++D A P L R+K+ + A EL + T++ Sbjct: 8 DLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELAKIVRTQD 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMN 126 + A ++GLPL+++GS GP + + + K+ +P WDERL++ + + LI D + Sbjct: 68 VGALVVGLPLSLDGSFGPAARAASDWTQ-ALSEKLGIPAGLWDERLSSSAVNRFLIKDAD 126 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 ++R +R + VD +AAA +LQ LD Sbjct: 127 MTRGRRAEVVDKMAAAYMLQGWLD 150 >gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13] Length = 138 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 84/138 (60%), Gaps = 11/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA------FI 72 I +D+G+K +G+AISD L K+ + A++ L F + I A + Sbjct: 3 ILGLDVGSKTVGVAISD---EMGWTAQGLETIKIDE-AIKNLGFKRLKQIIAEYKPEKVV 58 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP NMNGS GPR +++ + M+ K +P ++WDERL+TV+A++IL+ +VSRKKR Sbjct: 59 VGLPKNMNGSIGPRGEASKHY-GEMLTAKTGLPVIYWDERLSTVAAERILLSADVSRKKR 117 Query: 133 IQKVDSIAAALILQEVLD 150 Q +D +AA +ILQ LD Sbjct: 118 KQVIDKMAAVVILQGYLD 135 >gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6] gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6] Length = 148 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q + +D+G +RIG+A+SD A P + +Q + + + ++GL Sbjct: 3 EQRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL + G GP+ TR+F + +R+V +P + +DER TT A+Q+L +M V +KR Q+ Sbjct: 63 PLTLRGEIGPQAEQTRSFAQEL-ERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQ 121 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA++ILQ+ LD I Sbjct: 122 IDQVAASIILQDYLDHI 138 >gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch sediment'] Length = 144 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q ID GTKRIG+AISD A P P L + + I ++GLP Sbjct: 2 QRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP AF ++ V WDERLT+++A+++LI+ ++SR KR ++V Sbjct: 62 KNMNGTLGPSAERALAFA-GQLEEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRRV 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 121 DQMAAVLILQGFLDR 135 >gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries] gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Florida] gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries] gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Florida] Length = 164 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL + + Sbjct: 13 IESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKR 72 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 E I A ++GLPL ++G EG R+FV +I +K V DER TT A + + Sbjct: 73 EGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLI-KKSGVYVYLHDERFTTAMASRTTESL 131 Query: 126 NVSRKKRIQKVDS-IAAALILQEVLD 150 + R+K QKVD I+AALILQ+VLD Sbjct: 132 GL-RRKASQKVDDKISAALILQQVLD 156 >gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus amyloliquefaciens FZB42] gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7] gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42] gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7] Length = 138 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +DLGTK +G+A+SD G + + L+ LS + + N+ ++G P Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGYLDSLN 138 >gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Mississippi] gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Puerto Rico] gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Virginia] gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase Length = 157 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL + + Sbjct: 6 IESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKR 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 E I A ++GLPL ++G EG R+FV +I +K V DER TT A + + Sbjct: 66 EGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLI-KKSGVYVYLHDERFTTAMASRTTESL 124 Query: 126 NVSRKKRIQKVDS-IAAALILQEVLD 150 + R+K QKVD I+AALILQ+VLD Sbjct: 125 GL-RRKASQKVDDKISAALILQQVLD 149 >gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus YK9] gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus YK9] Length = 138 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G + IG+A+SD A + R+ E+ + + ++GLP N Sbjct: 3 IMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNGS GPR AF + +K+ +P WDERLTTVSA++ L++ +VSRKKR VD Sbjct: 63 MNGSVGPRGEICIAFAEEL-QQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVVDK 121 Query: 139 IAAALILQEVLD 150 +AA ILQ LD Sbjct: 122 LAATFILQNYLD 133 >gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG 18811] gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG 18811] Length = 143 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76 I +D+G++ +G+++SDP A + + + + L+ L I E A + ++GLP Sbjct: 3 ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135 NMN SEGPR + R + M++ + +P F DERLTTV A+++LI+ +VSRKKR Q Sbjct: 63 KNMNNSEGPRAEAARNYAK-MVEERFELPTDFQDERLTTVQAERMLIEEADVSRKKRKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDKIAAEFILQNYLD 136 >gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens] Length = 171 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58 M ++ ++ L + L + +D+G++ IGLA+SDP R A P + R T + Sbjct: 1 MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTV 116 L S + NI +IG PL + G +G + + F M R + +V+WDERLT+V Sbjct: 61 LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + ++ M+++ ++R VD ++A ILQ LD +S +E+ Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162 >gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM 5501] gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G KRIG A SD A + + + E+ S I ++ ++GLP N Sbjct: 4 ILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR T FV + ++ P + WDERL+T +A++ L+ +VSR KR +D Sbjct: 64 MNGTLGPRAEKTLDFVEQL-KEEIEPPIITWDERLSTAAAERTLLKADVSRAKRKDVIDK 122 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 123 MAAVVILQSYLD 134 >gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 4b H7858] gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459] gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL J1-175] gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes serotype 4b str. F2365] gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 4b H7858] gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes 1816] Length = 138 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP G + + Q + + + E + ++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + + Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKLAAVMILQSYLD 135 >gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus amyloliquefaciens TA208] gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens LL3] Length = 138 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +DLGTK +G+A+SD G + + L+ LS + + N+ ++G P Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGFLDSLN 138 >gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii NCIMB 8052] gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB 8052] Length = 138 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLG+K IG+A+SDP A + R + E+ F + +IGLP N Sbjct: 3 ILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP AF +I+ ++ V FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 MNGTIGPSGEIAMAF-GKVIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVDK 121 Query: 139 IAAALILQEVLDRIS 153 +A+ ILQ LD IS Sbjct: 122 VASTYILQGYLDMIS 136 >gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150] gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150] Length = 139 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+AISDP A + K+ + A E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVDKFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN +EGPRV +++A+ N I +P + DERLTTV A+++L++ +VSR KR Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GNKIKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM 14863] gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 144 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SD A + R+ + Q L + +++G+P N Sbjct: 3 IGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR TRAF+ + +P WDERL+T++A+++L++ +VSR +R + +D Sbjct: 63 MNGTYGPRAELTRAFMERLAGHS-GLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDK 121 Query: 139 IAAALILQEVLD 150 +AAA+ILQ LD Sbjct: 122 MAAAVILQGYLD 133 >gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 138 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 74/132 (56%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLGT+ IG+A+SD A + R L + E + AF++G P N Sbjct: 3 IMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R ++ AF + WDERL+TV+A+++LID +++RKKR + +D Sbjct: 63 MNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVIDM 122 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 123 MAAVVILQNYLD 134 >gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua Clip11262] gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262] gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378] gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023] Length = 138 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP G + + Q + + + E + ++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + + Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKLAAVMILQSYLD 135 >gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus 1_2_62CV] gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus 1_2_62CV] Length = 139 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 88/136 (64%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + ++ + + LS + E + F++GLP Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR + Sbjct: 63 KNMNNTSGPRVEASQAY-GAKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 15912] gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 15912] Length = 139 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + + + LE L+ + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAY-GTMIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes EGD-e] gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland 1988] gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL R2-561] gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes 10403S] gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes J0161] gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL F2-515] gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120] gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e] gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL F2-208] gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120] Length = 138 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP G + + Q + + + E + ++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + + Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKLAAVMILQSYLD 135 >gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM 2782] gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM 2782] Length = 142 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 2/136 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I ID G RIG+AISDP A + K+ + A+ LS I E + +IG P+ Sbjct: 3 ILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYPI 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++GPR T F+ + D + + WDERLTTVSA + + ++ + K+ VD Sbjct: 63 NMNGTKGPRTERTEEFIKKISDFGEF-NIIKWDERLTTVSAHRTMNELGIKASKKKDIVD 121 Query: 138 SIAAALILQEVLDRIS 153 +++A LILQ LDR++ Sbjct: 122 TMSAVLILQGYLDRMA 137 >gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like [uncultured bacterium] Length = 161 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q + +ID G + +G+A+SD + P F + K L + I ++G Sbjct: 11 GQRLLAIDYGDRFLGVAVSDIMWHISTPL-FPIDSKSCNAFQALGALIDQHACGGIVVGY 69 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+NMNGSEGP R F + +P +DERL+TV+A++ +++ ++SRKKR QK Sbjct: 70 PINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKKRKQK 129 Query: 136 VDSIAAALILQEVLDRI 152 VDS+AA+ +LQ LD + Sbjct: 130 VDSLAASYVLQGTLDYL 146 >gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1] gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1] Length = 137 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A + R + + L I+ ++ ++G+P N Sbjct: 3 IMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + AF+ + K+ +P WDERL+TV+A+++LI +VSR KR + +D Sbjct: 63 MNGTVGSQGEKVLAFIEK-VKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVIDK 121 Query: 139 IAAALILQEVLD 150 +AAA+ILQ LD Sbjct: 122 MAAAVILQGYLD 133 >gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC 3773] Length = 143 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G++ +G+A+SDP A + + + + LE L I + + ++GLP Sbjct: 3 ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN SEGPR + R + M++ +P F DERLTTV A+++LI + ++SRKKR Q Sbjct: 63 KNMNNSEGPRAEAARRYAK-MVEETFGLPTDFQDERLTTVQAERMLIEEADISRKKRKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDKIAAEFILQNYLD 136 >gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34] gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 139 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP G + ++ + E L + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN +EGPRV +++A+ + I+ +P + DERLTTV A+++L++ +VSR KR + Sbjct: 63 KNMNNTEGPRVEASKAY-GDKINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 121 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 122 IDKLAAQLILQNYLDRM 138 >gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1] gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1] Length = 143 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I +D+G KR+G+AISD A + RK + + I+ N+ I+GLP Sbjct: 3 ILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP + + + + + + FWDERLTT +A++ILI+ +VSR+KR + Sbjct: 63 KNMNGTLGPSSEAVENYTKKL-QKAISIDLEFWDERLTTAAAERILIEADVSRQKRKGVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 122 DKLAAVLILQSYLD 135 >gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC BAA-613] gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC BAA-613] Length = 171 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72 N I +D G+K +G+A+ DP A + R K+ QT + I I + Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMN + G R T+ F ++R+ + + WDERLTTV+A+++LI+ V R+ R Sbjct: 90 LGYPKNMNNTVGERGEKTQEF-KAALERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148 Query: 133 IQKVDSIAAALILQEVLDRISF 154 + VD IAAA+ILQ LD + + Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170 >gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J] gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J] Length = 139 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ E LS + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + D ++P V+ DERLTTV A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGKKIEDL-FHIPVVYQDERLTTVQAERMLIEQADISRGKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus F0211] gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus F0211] Length = 139 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 88/136 (64%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + ++ + + L+ + E + F++GLP Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR + Sbjct: 63 KNMNNTSGPRVEASQAY-GTKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 903] gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 903] Length = 139 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + + + LE L+ + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAY-GAMIAEKFGMPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str. Israel] gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str. Israel] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 1/145 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IE + L N+ I +D G +++GLAISD A P +R+ + Q EL + + Sbjct: 6 IEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELNAILKR 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 E I A ++GLPL ++G EG RAFV +I +K + DER TT A + + Sbjct: 66 EGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLI-KKSGIYVYLHDERYTTAMASRATESL 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 + RK+ + D I+A LILQ+VLD Sbjct: 125 GLRRKESQKVDDKISAVLILQQVLD 149 >gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942] gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942] Length = 138 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 I +DLGTK +G+A+SD G + + L LS +T ++ I ++G P Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTVGPRGEASQTFAK-LLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGYLDSLN 138 >gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis F0405] gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis F0405] Length = 139 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + + + LE L+ + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAY-GTMIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis F0396] gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus vestibularis ATCC 49124] gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis F0396] gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus vestibularis ATCC 49124] Length = 139 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+AISDP A + K+ + A E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVEKFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97] gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187] gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1] gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26] gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97] gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187] gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1] gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26] Length = 137 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ Q + +S + ++ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LDR Sbjct: 122 DKMAAVVILQGFLDR 136 >gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus SPIN 20026] gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus SPIN 20026] Length = 139 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + Q + LS + ++ F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes 220] gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str. Scott A] Length = 135 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP G + + Q + + + E + ++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 62 MNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 LAAVMILQSYLD 132 >gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC 700338] gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC 700338] Length = 136 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLS-FITTENIAAFIIGLPL 77 +D+G+K +G+AISDP F +VR ++ + E L + + F++GLP Sbjct: 2 GLDVGSKTVGVAISDP-LGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136 NMN +EGPRV +++A+ + I+ +P + DERLTTV A+++L++ +VSR KR + + Sbjct: 61 NMNNTEGPRVEASKAY-GDKINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119 Query: 137 DSIAAALILQEVLDRI 152 D +AA LILQ LDR+ Sbjct: 120 DKLAAQLILQNYLDRM 135 >gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909] gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1] gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909] gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1] Length = 143 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALE-LLSFITTENIAAFIIGL 75 I +DLGT+ G+AISD AH F + + A++ + + T I+ ++GL Sbjct: 2 KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNGS G R T+ F + + V + WDERLTT+ +++LI +VSR KR + Sbjct: 62 PKNMNGSIGERGQVTQEFAKKL-EEATNVTVILWDERLTTMQVERVLIQADVSRNKRKKV 120 Query: 136 VDSIAAALILQEVLD 150 VD +AA +ILQ LD Sbjct: 121 VDKMAATIILQSYLD 135 >gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758] gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758] Length = 143 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A+SDP A + RK K+ +T + S T + F+IG Sbjct: 4 IMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIGF 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R F M+ R+ + V WDERLTTV A++ L++ V R+ R Q Sbjct: 64 PKHMNNDIGERAEKALEF-GEMLKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRKQY 122 Query: 136 VDSIAAALILQEVLDRISF 154 VD IAA ILQ LD + Sbjct: 123 VDQIAAVFILQGYLDSLGM 141 >gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Eubacterium saburreum DSM 3986] gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Eubacterium saburreum DSM 3986] Length = 145 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFII 73 + I +D G+K IG+AISD A P + R K+ ++ ++ + +NI ++ Sbjct: 5 ERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+NMNG G RV T FV + R V VP + DERLTTV A +IL + V ++ R Sbjct: 65 GLPVNMNGRRGKRVSLTLEFVEKLKQR-VDVPIIMQDERLTTVEADEILDESGVKKENRK 123 Query: 134 QKVDSIAAALILQEVLDR 151 Q +D +AA +IL+E +++ Sbjct: 124 QFIDMVAAGIILREYMEK 141 >gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70] gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70] Length = 138 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + +DLGTK +G+A+SD G + ++ + L+ L I E + ++G P Sbjct: 3 VLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ + +P + WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTVGPRAEASQRFAK-LLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQSYLD 135 >gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23] gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578] gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923] gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578] gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923] gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99] Length = 135 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP G + + Q + + + E + ++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 LAAVMILQSYLD 132 >gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 140 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I +DLG K IG+AISDP F +R+ + +E L I E + +IGLP Sbjct: 4 ILGLDLGQKTIGVAISDP-LGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP AF +++ + + FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 NMNGTIGPSGEIAMAF-GKLLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 121 Query: 138 SIAAALILQEVLDRIS 153 +A+ ILQ LD IS Sbjct: 122 KVASTYILQGYLDMIS 137 >gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC 14579] gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264] gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185] gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15] gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4] gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24] gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550] gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264] gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550] gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24] gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4] gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15] gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185] gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 137 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ + +S + N+ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LDR Sbjct: 122 DKMAAVVILQGFLDR 136 >gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271] gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271] Length = 134 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 3/132 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLG K IG+A+SD +P LV K+ + EL I + ++G P N Sbjct: 3 VMGLDLGEKTIGVAVSDL--LMLTAQPLLVIKRSEKEQEELAGIIKEYEVDTIVVGYPKN 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R +T AF + +P WDERL+TV+AQ+ LI +VSR KR + +D Sbjct: 61 MNGTIGERALATEAFAQEL-QAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVIDK 119 Query: 139 IAAALILQEVLD 150 +AA ILQ LD Sbjct: 120 MAAVFILQGFLD 131 >gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7] gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7] gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7] gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7] Length = 138 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G + IG+A+SDP A + RK EL + N+ + GLP N Sbjct: 3 ILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F +I K+ +P WDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 MNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVDK 121 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LD IS Sbjct: 122 MAAIYILQGYLDSIS 136 >gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis XB6B4] Length = 144 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +GLA+SD A + R+ K+ QT + + I + ++G Sbjct: 3 ILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R + Sbjct: 63 PKNMNNTEGERCEKTKEF-KEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKKY 121 Query: 136 VDSIAAALILQEVLD 150 VD IAA ILQ LD Sbjct: 122 VDEIAAVFILQGYLD 136 >gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII 345-E] gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Dialister micraerophilus DSM 19965] gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII 345-E] gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Dialister micraerophilus DSM 19965] Length = 145 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 2/137 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I ++D+G+ IG+AISD A +R + E L + I + ++ ++G+PL Sbjct: 3 IMALDVGSHTIGVAISDLMGWTAQGLE-TIRHSTREKDFERLKTIIDSYDVKEIVVGMPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T FV ++ +P FWDERLTTV AQ+ LI ++SRKKR + +D Sbjct: 62 NMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVID 121 Query: 138 SIAAALILQEVLDRISF 154 +AA +IL+ L + F Sbjct: 122 KLAATVILEGYLRHLEF 138 >gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis 05ZYH33] gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis 98HAH33] gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591] gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84] gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7] gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407] gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33] gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33] gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591] gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84] gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407] gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7] gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus suis GZ1] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 87/136 (63%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE L+ + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAY-GDLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus thermophilus LMD-9] gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9] gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+AISDP A + K+ + A E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KINEEAKEFGFDRLGELVKEYQVDKFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681] gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681] Length = 138 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D G +RIG+A+SD A + R+ ++ + + + ++GLP N Sbjct: 3 VMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR F N + + +P WDERLTT SA++ L++ +VSRKKR Q VD Sbjct: 63 MNGTVGPRGEICIEFA-NRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVDK 121 Query: 139 IAAALILQEVLD 150 +AA+LILQ LD Sbjct: 122 LAASLILQNYLD 133 >gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM 771] gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM 771] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +DLG K IG+A+SDP A + RK + L L I + ++GLP Sbjct: 3 IMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F+ + RK+ + WDERL+TV+A++IL+ ++SR KR + +D Sbjct: 63 NMNGTTGPQAEKALDFIE-YLKRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKVID 121 Query: 138 SIAAALILQEVLDRISFL 155 +AAA+ILQ LD S + Sbjct: 122 KMAAAVILQGYLDAHSCI 139 >gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548] gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP ++ + RKK + + + ++ ++GLP N Sbjct: 4 IMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV +++ ++V V V+ DER+TT+ ++ +L+DM V R+ R + +D Sbjct: 64 MNNTIGPQAMRVISFV-DLLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKYIDK 122 Query: 139 IAAALILQEVLDR 151 IAA ILQ LDR Sbjct: 123 IAATFILQTYLDR 135 >gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC 43243] gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC 43243] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 4/132 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A++DP P + R K+ T + I ++ ++GL Sbjct: 3 ILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+EG R +R F +M++R+ + V DERLTTV A++IL V+RK + Sbjct: 63 PLNMDGTEGERAACSREF-GDMLERRTGLQVVMTDERLTTVEAEEILETCKVARKDYKKY 121 Query: 136 VDSIAAALILQE 147 VDS+AA LIL++ Sbjct: 122 VDSVAAVLILED 133 >gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str. Jelinkova 176] gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str. Jelinkova 176] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + Q + LS + +++ F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125] gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125] Length = 140 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLN 78 +D+GTK IG+A+SD A R + A + S + + +IGLP N Sbjct: 5 GLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP--FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 M+GS GP + F + + YVP V WDERLTT +A+++LI +VSRKKR + Sbjct: 65 MDGSIGPSGERSETFAAEL---RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKSVI 121 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LDR Sbjct: 122 DKMAAVMILQGYLDR 136 >gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus ATCC 51172] gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus ATCC 51172] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A P + R K + +I+ ++GLP N Sbjct: 4 IMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV ++I +++ V+ DERLTT+ ++ +LIDM+V R+ R +D Sbjct: 64 MNNTMGPQSMRIISFV-DLIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAHIDK 122 Query: 139 IAAALILQEVLDR 151 IAA+ ILQ LDR Sbjct: 123 IAASFILQTYLDR 135 >gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4] gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 3/133 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLN 78 +D+GTK +G+A+SD A L R + + L++ ++ +IGLP N Sbjct: 5 GLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP F ++ + V FV WDERLTTV+A+++L+ +VSRKKR + +D Sbjct: 65 MNGTIGPSGERCMEFADSLKEH-VDCEFVMWDERLTTVAAERMLVSADVSRKKRKKVIDK 123 Query: 139 IAAALILQEVLDR 151 +AA +ILQ LDR Sbjct: 124 MAAVMILQGYLDR 136 >gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa SC2] gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa SC2] Length = 138 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D G +RIG+A+SD A + R+ ++ + + I ++GLP N Sbjct: 3 VMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR F N + + +P WDERLTT SA++ L++ +VSRKKR Q VD Sbjct: 63 MNGTVGPRGEICIEFA-NRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVDK 121 Query: 139 IAAALILQEVLD 150 +AA+LILQ LD Sbjct: 122 LAASLILQNYLD 133 >gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20] gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20] Length = 143 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLPLN 78 +D+G++ +G+A+SDP A + + + + L L I E A ++GLP N Sbjct: 5 GLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN SEGPR + R + M++ + +P F DERLTTV A+++L+ + +VSRKKR Q +D Sbjct: 65 MNNSEGPRAEAARQYAQ-MVEDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRKQVID 123 Query: 138 SIAAALILQEVLD 150 IAA ILQ LD Sbjct: 124 KIAAEFILQNYLD 136 >gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis MPA1U2] gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis MPA1U2] Length = 138 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K IG+AISDP G + + + + +E L I + ++G P Sbjct: 3 IIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN S GPR ++ F ++ +P V WDERLTT +A+++LI +VSRK R + + Sbjct: 63 KNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKKVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVMILQGYLD 135 >gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 143 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G++ +G+++SDP A + + + + ++ L I E N ++GLP Sbjct: 3 ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN SEGPR ++R + +I++ +P F DERLTTV A+++LI + N+SRKKR + Sbjct: 63 KNMNNSEGPRAEASRNYAK-LIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDKIAAEFILQNYLD 136 >gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM 574] gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM 574] Length = 140 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 + +D+G K IG+A+SDP A + R L L+ I E + ++GLP Sbjct: 3 VMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ AF+ + +R + +P WDERL+TV+A++ L++ +VSR KR + +D Sbjct: 63 NMNGTLGPQGEKVLAFIERLKER-INLPVKTWDERLSTVAAERALLEADVSRSKRKKVID 121 Query: 138 SIAAALILQEVLD 150 +AAA+ILQ LD Sbjct: 122 KMAAAVILQGYLD 134 >gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus thermophilus LMG 18311] gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus thermophilus CNRZ1066] gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG 18311] gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus CNRZ1066] Length = 139 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+AISDP A + K+ + A E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KINEEAKEFGFDRLGELVKEYQVDKFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 138 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +DLGTK +G+A+SD G + + L LS + E I ++G P Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGYLDSLN 138 >gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC 11563] gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC 11563] Length = 139 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 83/132 (62%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+A+SDP A + + +++ + L+ L + E + A ++GLP N Sbjct: 5 GLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN S GPR +++ + +IDR +P + DERLTTV A+++LI +VSRKKR + +D Sbjct: 65 MNNSIGPRAEASQKYGQLVIDR-FDLPVFYQDERLTTVQAERMLIANDVSRKKRKKVIDK 123 Query: 139 IAAALILQEVLD 150 +AA LILQ LD Sbjct: 124 LAAVLILQNYLD 135 >gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM 2522] gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM 2522] Length = 142 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLP 76 + +D+GT IG+AISD A + R K Q L I ++++ ++GLP Sbjct: 3 VLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP +AF + +R + WDERLTTV+A+++L+ +VSRKKR + + Sbjct: 63 KNMNGTIGPSGELCQAFAEKLKER-TNLKVELWDERLTTVAAEKMLVSADVSRKKRKKVI 121 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LDR Sbjct: 122 DKMAAVMILQGYLDR 136 >gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR] gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR] Length = 133 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 4/132 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+GTKRIG+A+SDP R A + K + EL I ++ ++GLP N Sbjct: 3 VLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLPKN 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS GP+ + + + +P +DERLTTV+A++IL++ ++SR KR Q VD Sbjct: 60 MDGSLGPKAQEILELTEKLRE-TLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVDK 118 Query: 139 IAAALILQEVLD 150 AA LILQ LD Sbjct: 119 TAAVLILQGYLD 130 >gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus ATCC 51100] gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus ATCC 51100] Length = 139 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ Q E L+ + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I + +P + DERLTTV+A+++LI+ +VSR KR + Sbjct: 63 KNMNNTSGPRVEASKAYGEK-IAQLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 139 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+AISDP A + K+ + A E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVEKFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ ++SR KR Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis CGDNIH1] gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis CGDNIH1] Length = 168 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS+ + DL L NQ + ID G++ IG+A+SD A P + R K+ A E+ Sbjct: 3 MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + E IIGLPL+M+GS GP + R + + D +P WDER T+ Q Sbjct: 63 AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWAIALSD-ATGLPAALWDERETSSRVHQ 121 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 +LI ++ RK+R VD +AAA++LQ LD Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALD 152 >gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C str. JGS1495] gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C str. JGS1495] Length = 137 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G+K IG+A+SDP A + R T+ ++ + ++G+P N Sbjct: 3 ILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 MNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRIS 153 IAA ILQ LDRIS Sbjct: 122 IAATYILQGYLDRIS 136 >gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601] gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601] Length = 138 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + +D+G+K +G+AISD G + + Q + + + E ++ ++GLP Sbjct: 3 VMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR S++ + +++++V +P V WDER+TT +A++ L++ +VSR KR + + Sbjct: 63 KNMNNTLGPRAESSKKYAE-VLEKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKKVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKLAAVMILQSYLD 135 >gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium acetobutylicum EA 2018] Length = 135 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID+G K IG+A+SDP A + RK + EL + + GLP N Sbjct: 3 ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD Sbjct: 63 MNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVDK 121 Query: 139 IAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 122 VAATYILQGYLDSI 135 >gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82] gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82] gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis M50/1] Length = 144 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SD A + R+ K+ QT + + I + ++G Sbjct: 3 ILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R + Sbjct: 63 PKNMNNTEGERCEKTKEF-QEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKKY 121 Query: 136 VDSIAAALILQEVLD 150 VD IAA ILQ LD Sbjct: 122 VDEIAAVFILQGYLD 136 >gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 139 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 85/137 (62%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + E L + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN +EGPRV +++ + + I++ +P + DERLTTV A+++L++ ++SR KR + Sbjct: 63 KNMNNTEGPRVEASKVY-GDKINKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRKKV 121 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 122 IDKLAAQLILQNYLDRM 138 >gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5] gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp. subtilis str. 168] gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. natto BEST195] gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5] Length = 138 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +DLGTK +G+A+SD G + + L LS I I ++G P Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGYLDSLN 138 >gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 140 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G IG+A+SD A + R+ + + I +N+ + GLP N Sbjct: 6 IMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F +I + + FWDERLTTVSA+++LI +VSRK R + +D Sbjct: 66 MNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVIDK 124 Query: 139 IAAALILQEVLDRISF 154 +AA LILQ LD F Sbjct: 125 LAAVLILQNYLDFKKF 140 >gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B] gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans 743B] gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B] Length = 135 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G K IG+A+SDP A + RK + ++++ + ++GLP N Sbjct: 3 VLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ AFV + + + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 MNGTLGPQSEKVMAFVEKL-KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVDK 121 Query: 139 IAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 122 VAATYILQGYLDSI 135 >gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1056] Length = 139 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE LS + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ] gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum HZ] Length = 166 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 1/145 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I +L +L+P + I ID G ++IGLA+SDP A P R+ + Q EL + + + Sbjct: 6 IRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELSAVLRS 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 E+ A ++G PL +G EG RAF +I +K V DER TT A + + Sbjct: 66 EDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLI-KKSGVSIYLHDERYTTAMASRATREA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 + RK+ + D I+AAL+LQ+VLD Sbjct: 125 GLRRKESQKIDDKISAALVLQQVLD 149 >gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 143 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G++ +G++ISDP A + + + + ++ L I E N ++GLP Sbjct: 3 ILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN SEGPR ++R + +I+ +P F DERLTTV A+++LI + N+SRKKR + Sbjct: 63 KNMNNSEGPRAEASRNYAK-LIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDKIAAEFILQNYLD 136 >gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1] gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1] Length = 139 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A+SD A P + RK K+ +T + + N+ ++GL Sbjct: 4 ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T +F ++ R+ + + WDERLTTV+++++L++ V R+ R + Sbjct: 64 PKNMNNTVGERGEDTLSFRDALV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D IAA++ILQ LD Sbjct: 123 IDQIAASMILQGYLD 137 >gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 139 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + + E L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV ++RA+ + + +P + DERLTTV+A+++LI+ +VSR KR + Sbjct: 63 KNMNNTSGPRVEASRAYGAKVTEL-FGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 140 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +D+G K IG+A+SD A P + R+ Q ++ + I NIA ++GLP Sbjct: 6 EKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGLP 65 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GP+ F + K V ++ DER+TT+SA +ILI+ V R+ R Q V Sbjct: 66 KNMNNTLGPQSEKVLKFSEKL-KNKYGVEIIYIDERMTTISANRILIEGEVRRENRKQYV 124 Query: 137 DSIAAALILQEVLD 150 D IAA ILQ LD Sbjct: 125 DKIAATYILQTYLD 138 >gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis 05HAS68] gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3] gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14] gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3] Length = 136 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 86/134 (64%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ + LE L+ + + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAY-GDLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM 13479] gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM 13479] Length = 161 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SD A + R+ K+ +T + I I ++G Sbjct: 18 IMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIEELIREYEIETIVLGY 77 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G RV T +F M++R+ +P V WDERLTTV +++IL + V R+ R Sbjct: 78 PKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSERILQESGVRRENRKAV 136 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 137 IDKVAAGLILQGYLD 151 >gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus SAFR-032] gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Bacillus pumilus SAFR-032] gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] Length = 138 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +DLGTK +G+AISD G + + L LS I ++ ++G P Sbjct: 3 ILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR ++++F +++ VP V WDERL+T++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTVGPRGEASQSFAK-VLENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGYLDSLN 138 >gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05] gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1] gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05] gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1] Length = 152 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 74/143 (51%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 IDLG R+GLA+SDPG FAHP V E+L I N+ +IGLPL + Sbjct: 5 GIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127 +G+EG + N+I R Y+P V W DERLTTVSA + L+ ++ Sbjct: 65 DGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQADL 124 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 S KK VD +A LILQ LD Sbjct: 125 STKKHRPMVDQQSAVLILQSALD 147 >gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 139 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+AISD A + R + + I + I+GLP N Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137 MNG+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + +D Sbjct: 63 MNGTLGPQGQKVMRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVID 121 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 122 KLAAVLILQNYLD 134 >gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551] gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319] gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551] gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319] Length = 138 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLP 76 + +D+GTK IG+A+SD A + +++ Q+ L I ++ ++GLP Sbjct: 3 VLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + F N + K+ + + WDERL+T++A+++L+ +VSRKKR + + Sbjct: 63 KNMNGTIGPRGEACIEFADN-VKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVMILQGYLD 135 >gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl 5] gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus PAl 5] gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl 5] gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus PAl 5] Length = 154 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 2/139 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L +Q + +D G K IGLA+SD A P L R K++ A E+ E + + Sbjct: 13 LGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIRRIAAREGVGGLV 72 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131 GLPL+M+GS GP + R ++ ++ + +V +P WDERL++ + ++LI D +++R++ Sbjct: 73 SGLPLSMDGSFGPAAQAARDWMISLSE-QVGLPAAMWDERLSSSAVNRMLIQDADMTRQR 131 Query: 132 RIQKVDSIAAALILQEVLD 150 R + VD +AA+ +LQ LD Sbjct: 132 RAELVDKLAASYMLQGALD 150 >gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC 29176] gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC 29176] Length = 148 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 4/145 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+AISD + A + RK K+ +T + I + ++G Sbjct: 3 IMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F M++R+ + V WDERLTTV+A++ LI+ +V R+ R Q Sbjct: 63 PKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRKQY 121 Query: 136 VDSIAAALILQEVLDRISFLESSKG 160 VD IAA ILQ LD +S + G Sbjct: 122 VDKIAAVFILQGYLDLLSMRNGADG 146 >gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM 10507] gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM 10507] Length = 152 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SDP A + RK K+ QT + + I + ++GL Sbjct: 3 ILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + F +M+ R+ +P V WDERLTTV A + L++ V R+ R Sbjct: 63 PKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRKDY 121 Query: 136 VDSIAAALILQEVLD 150 VD +AA ILQ LD Sbjct: 122 VDELAAIFILQGYLD 136 >gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427] gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427] Length = 139 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGL 75 I +D GTK G+AISDP A + R++ + T + T + ++GL Sbjct: 3 ILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T F + + K+ +P WDERL+TV+A+Q+L++ ++SRKKR Sbjct: 63 PKNMNNTLGERGEKTLLFKEKL-ENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRKNV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAATIILQNYLD 136 >gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246] Length = 169 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIA 69 S P + +D GTKRIG+A+ DP R A P V + E A Sbjct: 10 SFPPRGALLGVDYGTKRIGVAVCDPDRVIASP----VGTQANDATREPYFRDLCARSKFA 65 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++GLPL+ +G E P RAF + D +P V WDER T+ +A+ L+ ++R Sbjct: 66 GVVVGLPLHASGEESPMSGEARAFARWLSDL-TGLPVVMWDERHTSFAAESALLGAGLTR 124 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 KKR +KVD +AA +ILQ +D S Sbjct: 125 KKRKEKVDRVAAQMILQTFIDAGS 148 >gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046] Length = 138 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISD G + + + +E ++ + E N+ F++G P Sbjct: 3 IMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR ++ ++ +++ P WDER+TT++A+++LI+ +VSRKKR Q + Sbjct: 63 KNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVMILQGYLD 135 >gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques L2-14] Length = 145 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 + +D GTK +G+AISDP A + RK K+ +T + I + ++G Sbjct: 3 VMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F +M+ R+ + + WDERLTTV+A+Q LI+ V R+ R Q Sbjct: 63 PKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRKQY 121 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 VD IAA ILQ LD I ++++ Sbjct: 122 VDKIAAVFILQGYLDSIYMQKTAE 145 >gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Ames] gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC 10987] gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Sterne] gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L] gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Bacillus anthracis str. A2012] gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis str. Al Hakam] gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0488] gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0193] gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0174] gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis Tsiankovskii-I] gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W] gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus NVH0597-99] gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108] gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820] gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102] gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. CDC 684] gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42] gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201] gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342] gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1] gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0248] gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str. CNEVA-9066] gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str. A1055] gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Western North America USA6153] gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Kruger B] gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Australia 94] gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1] gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI] gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames] gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC 10987] gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. Sterne] gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction resolvase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction resolvase [Bacillus cereus E33L] gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0488] gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0193] gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0174] gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis Tsiankovskii-I] gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W] gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108] gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus NVH0597-99] gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820] gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102] gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. CDC 684] gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1] gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342] gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201] gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42] gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0248] gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1] gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar anthracis str. CI] gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 137 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ Q + +S + ++ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius C56-YS93] gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1] gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius C56-YS93] gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1] Length = 138 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +DLGTK +G+A+SD G + ++ + L+ L I E + ++G P N Sbjct: 5 GLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR +++ F +++++ +P + WDERL+T++A+++LI +VSRKKR + +D Sbjct: 65 MNGTVGPRAEASQRFAK-ILEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRKVIDK 123 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 124 MAAVVILQSYLD 135 >gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC 23779] gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC 23779] Length = 158 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G KRIG+A+ DP R A +P L + + +LL IT + +IGLPL Sbjct: 10 IIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVIGLPLT 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G G + + +AF + +++ +P +DER T+V A++ L M + + K VD Sbjct: 70 LRGEVGAQAKAVQAFSRGL-EKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHRDHVDE 128 Query: 139 IAAALILQEVLDRIS 153 +AA LILQ+ + I+ Sbjct: 129 LAAILILQDYMSSIA 143 >gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW 200] gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW 200] Length = 139 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+AISD A + R + + I + I+GLP N Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137 MNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +D Sbjct: 63 MNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVID 121 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 122 KLAAVLILQNYLD 134 >gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 135 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A + RK++ + E+ I I GLP N Sbjct: 3 ILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 63 MNGTIGEQGEKVLEFC-DVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRI 152 IAA ILQ LD I Sbjct: 122 IAATYILQGYLDSI 135 >gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK330] Length = 139 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ +VSR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADVSRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans NG80-2] gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16] gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16] Length = 138 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +DLGTK +G+A+SD G + ++ E L I E + ++G P N Sbjct: 5 GLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGWPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR ++ F + + + +P V WDERL+T++A+++LI +VSRKKR + +D Sbjct: 65 MNGTLGPRAEASERFAAKLRE-EFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDK 123 Query: 139 IAAALILQEVLD 150 +AAA+ILQ LD Sbjct: 124 MAAAVILQSYLD 135 >gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3 str. Alaska E43] gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 137 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I +DLG K IG+AISDP F +R+ + +E L I E + +IGLP Sbjct: 3 ILGLDLGKKTIGVAISDP-LGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPS-GEIAMEMGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +A+ ILQ LDRIS Sbjct: 121 KVASTYILQGYLDRIS 136 >gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus G9241] gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134] gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407] gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676] gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2] gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W] gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876] gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis BMB171] gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus G9241] gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134] gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876] gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W] gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2] gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676] gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407] gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis BMB171] gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 137 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ + +S + N+ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT 12067] gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT 12067] Length = 140 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 74/134 (55%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+GT+ IG+A+SD A+ + R + + I + ++G P NMN Sbjct: 5 SLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYPKNMN 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G R + A + V V WDERL+TV+A+++L+D ++ RKKR + +D +A Sbjct: 65 GTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVIDMMA 124 Query: 141 AALILQEVLDRISF 154 A +ILQ LD SF Sbjct: 125 AVVILQNYLDSKSF 138 >gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium acetobutylicum ATCC 824] gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium acetobutylicum ATCC 824] Length = 135 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID+G K IG+A+SDP A + RK + EL + + GLP N Sbjct: 3 ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD Sbjct: 63 MNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVDK 121 Query: 139 IAAALILQEVLDRI 152 +AA ILQ L+ I Sbjct: 122 VAATYILQGYLNSI 135 >gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM 2638] gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM 2638] Length = 135 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 5/135 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 + SID GTKR+GLAISDP + FA P+ V ++ T+ A+ ELL I E + +IGLP Sbjct: 3 VLSIDFGTKRVGLAISDPDQIFAF--PYKVMERTTRDAMFSELLEIIENEKVGDIVIGLP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+++G + R F ++ +R+V +P DERL++++A+ L + + +KR + + Sbjct: 61 LSLDGEDTLTTRQVRNFAASL-ERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNL 119 Query: 137 DSIAAALILQEVLDR 151 DS AA +IL+ L R Sbjct: 120 DSQAAKIILETWLAR 134 >gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9] gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9] Length = 139 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+AISD A + R + + I + I+GLP N Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 MNG+ GP+ FV ++ +K + +P + WDERLTTV A+++LI+ ++SR KR + + Sbjct: 63 MNGTLGPQGQKVVRFVEHL--KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 121 DKLAAVLILQNYLD 134 >gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442] gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17] gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4] gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4] gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17] gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442] Length = 137 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ Q + +S + N+ I+GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F ++ + + + + WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAQSLREL-LQLDVMMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGYLD 135 >gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens QYMF] gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens QYMF] Length = 138 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G + IG+AISD A + R + + L I + ++GLP N Sbjct: 4 IIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ FV + +++ + V WDERL+TV+A++ LI +VSRKKR Q +D Sbjct: 64 MNGTIGPQGEKVLLFVERL-EKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQVIDK 122 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LD IS Sbjct: 123 LAAVHILQGYLDSIS 137 >gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens str. 13] gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens ATCC 13124] gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens SM101] gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E str. JGS1987] gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B str. ATCC 3626] gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens CPE str. F4969] gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens NCTC 8239] gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D str. JGS1721] gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens ATCC 13124] gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens SM101] gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E str. JGS1987] gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B str. ATCC 3626] gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens CPE str. F4969] gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D str. JGS1721] gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens NCTC 8239] Length = 137 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G+K IG+A+SDP A + R T+ ++ + + G+P N Sbjct: 3 ILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 63 MNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRIS 153 IAA ILQ LDRIS Sbjct: 122 IAATYILQGYLDRIS 136 >gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum ATCC 14931] gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum ATCC 14931] Length = 145 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 84/134 (62%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+G+K +G+A SDP A + + ++ LE ++ + + +A F++GLP N Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + +D Sbjct: 65 MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 124 ELAATLILQNYLDR 137 >gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium 5_1_63FAA] Length = 139 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A+SD A P + RK K+ +T + + ++ ++GL Sbjct: 4 ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T +F ++ R+ + + WDERLTTV+++++L++ V R+ R + Sbjct: 64 PKNMNNTVGERGEDTLSFRDTLV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D IAA++ILQ LD Sbjct: 123 IDQIAASMILQGYLD 137 >gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis VMC66] gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis VMC66] gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK72] gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK49] gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1059] Length = 139 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQR-VSELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC 3537] Length = 143 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76 I +D+G++ +G+A+SDP A + + + + LE L I E A ++GLP Sbjct: 3 ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135 NMN +EGPR + R + M++ + F DERLTTV A+++LI+ +VSRKKR + Sbjct: 63 KNMNNTEGPRAQAARDYAK-MVEDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D IAA ILQ LDR Sbjct: 122 IDKIAAEFILQNYLDR 137 >gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM 14469] gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM 14469] Length = 161 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+AISD A + R K+ QT + + I ++ ++G Sbjct: 9 IMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLGF 68 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + AF M++R+ +P V WDERLTTV A + L++ V R+KR Sbjct: 69 PKNMNNTIGERAEKSLAF-KEMLERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKDY 127 Query: 136 VDSIAAALILQEVLDRISF 154 VD +AA ILQ LD ++ Sbjct: 128 VDKLAAVYILQGYLDYLAM 146 >gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM 16646] gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM 16646] Length = 145 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G KRIG+A+SD A + R V + + + + IIGLPLN Sbjct: 3 ILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ + F + + + +WDERL+TV+A+++LID ++SR+KR +D Sbjct: 63 MNGTLGPQGQLVKDFGEKL-RHSLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVIDK 121 Query: 139 IAAALILQEVLDRISFLESS 158 ++A +ILQ LD S +++ Sbjct: 122 LSAIVILQSFLDSRSNIDTG 141 >gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353] gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353] Length = 145 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77 +D GTK +G+A+SD A + RK K+ QT + + I ++ ++GLP Sbjct: 7 GLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIVLGLPK 66 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + G R T+ F M+ R+ + V WDERLTT+ +++IL + V R+ R +++D Sbjct: 67 NMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENRKERID 125 Query: 138 SIAAALILQEVLD 150 +AA LILQ +D Sbjct: 126 WMAATLILQSYMD 138 >gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1] gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163] gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429] gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1] gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163] gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429] Length = 144 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78 +D+G+K +G+A SDP G + + + + L+ L I +E ++ +IGLP N Sbjct: 5 GLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV ++R + M+ + +P + DERLT+V A ++LI + ++SR KR + +D Sbjct: 65 MNNTEGPRVEASRNY-GKMVSERFGLPIDYQDERLTSVEANRMLIEEADLSRAKRKKVID 123 Query: 138 SIAAALILQEVLDR 151 S+AA LILQ LD+ Sbjct: 124 SLAAQLILQNYLDK 137 >gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] Length = 137 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G + IG+A+SDP A + RK + EL S + + GLP N Sbjct: 3 ILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + +F +I++ + VP WDERLTTV+A + +I+ ++SR KR + VD Sbjct: 63 MNGTLGLQSEKVLSFC-KVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LD IS Sbjct: 122 MAAIYILQGYLDSIS 136 >gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B str. Eklund 17B] gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 137 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I +DLG K IG+A+SDP F +R+ + +E L I E + +IGLP Sbjct: 3 ILGLDLGKKTIGVAVSDP-LGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPS-GEIAMEMGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +A+ ILQ LDRIS Sbjct: 121 KVASTYILQGYLDRIS 136 >gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK115] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis SK36] gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis SK36] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis ATCC 700641] gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis ATCC 700641] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + L+ LS + E + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAY-GKRLEELFNLPVEYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633] gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633] Length = 140 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 84/135 (62%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLP 76 + +D+G+K +G+AISDP G ++ + ++ ++ + + +IG+P Sbjct: 3 VMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGMP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN + GPR +++ + ++ ++++ +P VF DERLTT+ A+++L+ + NVSRKKR + Sbjct: 63 KNMNNTAGPRAEASQKYGRSL-EKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRKEV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAVIILQNYLD 136 >gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275] gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275] Length = 140 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SD A + R E+ I + + + GLP N Sbjct: 6 IMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ + F +I + + FWDERLTTV+A++ LI +VSRKKR +D Sbjct: 66 MNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVIDM 124 Query: 139 IAAALILQEVLD 150 +AA LILQ LD Sbjct: 125 MAAVLILQGYLD 136 >gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK405] gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK678] gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK150] gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1] gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1057] gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK408] gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1058] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+AISD A + R + + I + I+GLP N Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 MNG+ GP+ FV ++ +K + +P + WDERLTTV A+++LI+ ++SR KR + + Sbjct: 63 MNGTLGPQGQKVVRFVEHL--KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 121 DKLAAILILQNYLD 134 >gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1] gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1] Length = 85 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP NM+GSEGPR ++RAF N + +P + WDER +T SA+ +I ++SRKK Sbjct: 1 MLGLPRNMDGSEGPRAQASRAFARN-AEEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 R + +DS AAA+ILQ +DR++ Sbjct: 60 RAESIDSHAAAVILQGAIDRLA 81 >gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs] gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 73/133 (54%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G K IG+AISD A + R + + L I +I ++GLP NMN Sbjct: 6 GLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNMN 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ GP+ F + R V V WDERLTTV+A++ LI+ +VSRKKR + +D +A Sbjct: 66 GTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEVIDKMA 125 Query: 141 AALILQEVLDRIS 153 A ILQ LD S Sbjct: 126 AVYILQGYLDSAS 138 >gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3] Length = 78 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/78 (53%), Positives = 54/78 (69%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLN 78 F E +A F+IGLP+N Sbjct: 61 DFAAKERVAGFVIGLPMN 78 >gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii str. Challis substr. CH1] gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii str. Challis substr. CH1] Length = 139 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + + E L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKVTEL-FGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing bacterium SSC/2] Length = 139 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A+SD A P + RK K+ +T + + ++ ++GL Sbjct: 4 ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R T +F ++ R+ + + WDERLTTV+++++L++ V R+ R + Sbjct: 64 PKNMNNTVGERGEDTLSFRDALV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D IAA++ILQ LD Sbjct: 123 IDQIAASMILQGYLD 137 >gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1] gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1] Length = 246 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + I L L+ +Q + +D G K IG+A+SD G A P L R K++ A ++ Sbjct: 84 MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +++ ++GLPL+++GS GP + R + N+ + +P WDERL++ + + Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDWTLNLSE-LTGLPAAMWDERLSSSAVNR 202 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 LI + +++R++R VD +AAA ILQ LD Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233 >gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 139 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + E L + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I+ +P + DERLTTV A+++LI+ +VSR KR + Sbjct: 63 KNMNNTSGPRVEASKAYGEK-IESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp. X514] gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus CCSD1] gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561] gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513] gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514] gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus CCSD1] gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561] gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513] Length = 139 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+AISD A + R + + I + I+GLP N Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137 +NG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +D Sbjct: 63 LNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVID 121 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 122 KLAAVLILQNYLD 134 >gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814] gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814] Length = 146 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SDP A + RK K+ +T + + I + ++GL Sbjct: 5 IMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + AF M+ R+ + V WDERLTTV A++ LI+ V R+ R + Sbjct: 65 PKHMNNDIGDRAEKSMAF-GEMLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 123 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA ILQ LD ++ Sbjct: 124 IDKIAAVFILQGYLDSLA 141 >gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK353] Length = 139 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842] gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222] gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200] gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29] gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28] gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842] gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28] gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29] gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200] gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222] Length = 137 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+A+SD G + ++ + +S + N+ ++GLP Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus weihenstephanensis KBAB4] gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048] gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271] gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603] gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196] gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621] gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3] gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis KBAB4] gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3] gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621] gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196] gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603] gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271] gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048] Length = 137 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+A+SD G + ++ + +S + N+ ++GLP Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLRNL-LQLEVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM 12885] gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM 12885] Length = 326 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 9/140 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG++ IG+AISDP A P L R+ + A ++ + ++G P ++ Sbjct: 5 GLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPRRLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV-FWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G+ GP + F + R+ VP V WDERL+TV A+++LI ++SR++R Q +D + Sbjct: 65 GTRGPEAEAAERFADAL--REAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQIIDRM 122 Query: 140 AAALILQEVLDRISFLESSK 159 AA +ILQ +FL+S + Sbjct: 123 AATVILQ------AFLQSQR 136 >gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii L2-63] Length = 141 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPL 77 I S+DLG R G+A+ D A P + K Q LE +S E A I+ GLP Sbjct: 3 IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQ-LLEKVSNTAKETKAELIVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEG + RAF N+ + + + V DER TT++A L N KKR VD Sbjct: 62 NMDGSEGESAQNARAFAENLSN-ETGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVD 120 Query: 138 SIAAALILQEVLDR 151 +AA +ILQ+ LD+ Sbjct: 121 EVAATIILQDYLDK 134 >gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase Length = 147 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 84/135 (62%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 + +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP Sbjct: 4 LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR + Sbjct: 64 KNMNNTSGPRVEAAKAY-GELLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA+LILQ LD Sbjct: 123 IDKLAASLILQNYLD 137 >gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius UCC118] gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius UCC118] Length = 143 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78 +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP N Sbjct: 2 GLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR + +D Sbjct: 62 MNNTSGPRVEAAKAY-GELLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVID 120 Query: 138 SIAAALILQEVLD 150 +AA+LILQ LD Sbjct: 121 KLAASLILQNYLD 133 >gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803] gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803] Length = 137 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+A+SD G + ++ + +S + N+ ++GLP Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925] gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925] Length = 135 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SDP A + RK++ + E+ I I GLP N Sbjct: 3 ILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 63 MNGTIGEQGEKVLEFC-DVLKDKLDIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRI 152 IAA ILQ LD I Sbjct: 122 IAATYILQGYLDSI 135 >gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna ACS-171-V-Col3] gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4] gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna ACS-171-V-Col3] gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4] Length = 137 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G + IG+AISDP A + RK + + I + ++ I+GLP NMN Sbjct: 6 GLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGLPKNMN 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR +DS+A Sbjct: 66 NTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVA 124 Query: 141 AALILQEVLD 150 A ILQ LD Sbjct: 125 ATYILQTYLD 134 >gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426] gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61] gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3] gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52] gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61] gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3] gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52] Length = 138 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +DLGTK +G+A+SD G + + L+ L I E + ++G P N Sbjct: 5 GLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGWPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR ++ F + + + +P V WDERL+T++A+++LI +VSRKKR + +D Sbjct: 65 MNGTLGPRAEASERFAAKLRE-EFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDK 123 Query: 139 IAAALILQEVLD 150 +AAA+ILQ LD Sbjct: 124 MAAAVILQSYLD 135 >gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK160] Length = 139 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656] gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656] Length = 143 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SD A + RK K+ QT + I + ++G Sbjct: 3 ILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN +EG R T+ F +M+ R+ + ++WDERLTTV+A + +++ + R+ R + Sbjct: 63 PKNMNNTEGERCEKTKEF-GDMLARRTGLEVIYWDERLTTVAADRSMMETGIRRENRKEF 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD IAA ILQ LD +S Sbjct: 122 VDEIAAIFILQGYLDYLS 139 >gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1062] gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1002] gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1062] gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1002] Length = 151 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 5/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG+KRIG++I D + A P + + + EL I NI I+G P+NM+ Sbjct: 19 GLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKIIIKDNNIGGIIVGNPVNMD 78 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI--LIDMNVSRKKRIQKVDS 138 GS G S N I + + +P + WDERL+TV A + L+D+NVS KR++ +D Sbjct: 79 GSLGRSAQSVNDVASN-ISKSIDLPVILWDERLSTVGAFNLSSLLDVNVS--KRVKTIDQ 135 Query: 139 IAAALILQEVLD 150 AAA ILQ +D Sbjct: 136 NAAAFILQGAID 147 >gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3] gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3] Length = 147 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+G+K +G+A+SDP A + + + L+ ++ + E +A F++GLP N Sbjct: 5 GLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ + +D Sbjct: 65 MNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124 Query: 138 SIAAALILQEVLDR 151 +AA ILQ LDR Sbjct: 125 EVAATFILQSYLDR 138 >gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas noxia ATCC 43541] gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas noxia ATCC 43541] Length = 137 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 76/136 (55%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G IG+A+SD A + R+ ++ L I A + GLP +MN Sbjct: 2 SLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHMN 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R RAF+ + +R + +WDERL+TV+A + L++ +VSRKKR + +D +A Sbjct: 62 GQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKMA 121 Query: 141 AALILQEVLDRISFLE 156 A ILQ LDR L+ Sbjct: 122 AVYILQGFLDRQQHLK 137 >gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 144 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G +RIG+A+SDP A P + R+ Q A E+ E + ++G PL+M+ Sbjct: 2 AIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHMS 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G F M+ + +P +DERLTTVSA++ILI+ NV R++R VD+ A Sbjct: 62 GQPSEMTSRAEKFAR-MLAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAAA 120 Query: 141 AALILQEVL 149 A ++L++ L Sbjct: 121 AQVLLEDYL 129 >gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 138 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+GT RIG+A+SDP FA V +L +T+ +++ ++GLP+ Sbjct: 5 IVALDMGTVRIGVAMSDPLGSFAQG--VAVWDAEGDWLSDLRDLVTSRDVSTVVVGLPIR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 NG++GP + A + + + V WDER T+ A ++LI+ +VSRKKR +VD Sbjct: 63 ENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQVDK 122 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 123 VAATVILQGYLD 134 >gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756] gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA] gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756] gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium 8_1_57FAA] gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA] Length = 145 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+AISD R A + RK K+ +T + I ++ ++G Sbjct: 3 IMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F M+ R+ + + WDERLTTV A++ LI+ NV R+ R + Sbjct: 63 PKHMNNDIGERAQQSMEF-GEMLKRRTGLEVILWDERLTTVEAERTLIESNVRRENRKKH 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDQIAAVFILQGYLD 136 >gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 135 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G + IG+A+SDP A + RK V + EL + I GLP N Sbjct: 3 ILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 63 MNGTVGEQGEKVIEFC-DILKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 122 MAATYILQGYLDSI 135 >gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2] gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2] Length = 135 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 85/132 (64%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78 +D+G+K +G+A+SD G + ++ + E +S I E+ ++ ++GLP N Sbjct: 2 GLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR +++ F + +++ +P V WDERL+T++A+++L++ +VSRKKR + +D Sbjct: 62 MNGTIGPRGEASQ-FYASELEKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVIDK 120 Query: 139 IAAALILQEVLD 150 +AA +ILQ L+ Sbjct: 121 MAAVMILQGFLN 132 >gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis ATCC 14580] gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis ATCC 14580] gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2] gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580] gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580] gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2] Length = 139 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 I +DLG+K +G+A+SD G + + L L+ +T + I ++G P Sbjct: 3 ILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERL+T++A+++LI +VSR+KR + + Sbjct: 63 KNMNGTVGPRGEASQKFAE-VLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKVI 121 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 122 DKMAAVMILQGYLDSLN 138 >gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK355] Length = 139 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + + LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRRKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans Z-2901] gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus hydrogenoformans Z-2901] Length = 138 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G K+IG+A+SD A + R + + E+ I ++ +IG P N Sbjct: 3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR + F + P VFWDERL+TV A+++LI ++SR+KR + +D Sbjct: 63 MNGTAGPRAELVKRFARELYKFTGIKP-VFWDERLSTVEAEKLLISGDISRRKRKKVIDK 121 Query: 139 IAAALILQEVLD 150 +AA LIL L+ Sbjct: 122 LAATLILSGYLN 133 >gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831] gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 137 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 I +D+G+K IG+A+SD G + + +A E L I +E+ I IIGLP Sbjct: 3 IIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ G R +++ + N I++ +P WDERLTT++A+++L++ ++SR KR + + Sbjct: 63 KNMNGTIGERGEASQRYA-NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKVI 121 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LD+ Sbjct: 122 DKMAAVMILQGYLDQ 136 >gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 138 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 7/139 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G+K IG+AISDP A + R K Q E+ ++ +IGLP N Sbjct: 3 ILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPKN 62 Query: 79 MNGS---EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 MNG+ G RV + +I + WDERLTTV+A + +++ ++SR KR + Sbjct: 63 MNGTIGESGERVLE----LSEIIKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKI 118 Query: 136 VDSIAAALILQEVLDRISF 154 VD IAA ILQ LDR+S Sbjct: 119 VDKIAATYILQGYLDRLSM 137 >gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 147 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+G+K +G+A+SDP A + + + L+ ++ + E +A F++GLP N Sbjct: 5 GLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ + +D Sbjct: 65 MNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124 Query: 138 SIAAALILQEVLDR 151 +AA ILQ LDR Sbjct: 125 EVAATFILQSYLDR 138 >gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1087] Length = 139 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ LE L + E + F+IGLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293] gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293] Length = 137 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ + +S + ++ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae G54] gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 139 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp. zooepidemicus] gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp. zooepidemicus] Length = 139 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP A + K+ + + L + + F+I Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KINEDKQDFGFDRLAELVKQYQVDRFVI 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN + GPRV +++A+ + I+ ++P + DERLTTV A+++LI+ ++SR KR Sbjct: 60 GLPKNMNNTSGPRVEASKAY-GDRIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA LILQ LD Sbjct: 119 KKVIDKLAAQLILQNYLD 136 >gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter sp. HTCC7211] gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter sp. HTCC7211] Length = 151 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 ++ IEDL K + +DLG+KRIG++I D + A P + + + EL Sbjct: 1 MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I +I ++G P+NM+G+ G S N ID+ + + WDERL+TV A + Sbjct: 61 IEEYDIKGIVVGNPINMDGTLGRSSQSVNDVSDN-IDKAIDIDVCLWDERLSTVGAFNLS 119 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150 ++V+ KR + +D AAA ILQ +D Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAID 147 >gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum A2-162] Length = 140 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SDP A + RK K+ QT + I + ++G Sbjct: 3 ILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R F M+ ++ + + WDERLTTV A + LI+ V R+ R Q Sbjct: 63 PKNMNNTVGERAEKALEF-GEMLKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRKQY 121 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA ILQ LD +S Sbjct: 122 LDGIAAVFILQGYLDSLS 139 >gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047] gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp. equi 4047] Length = 139 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 6/136 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP F ++R + L + + F+IGL Sbjct: 3 IMGLDVGSKTVGVAISDP-LGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134 P NMN + GPRV +++A+ + I+ ++P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASKAY-GDKIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 121 VIDKLAAQLILQNYLD 136 >gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6] gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6] Length = 139 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFSLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 142 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++DLG RIG+A+SDP R FA P L K L++ + ++ ++GLP+ Sbjct: 8 VMALDLGEVRIGVALSDPSRSFASPLEVL--KMEEGWPLKVKELVERNSVTLIVVGLPIR 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +GS GP V ++ + V V DER TT AQ+ L++ +V R+KR KVD Sbjct: 66 TDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRKGKVDK 125 Query: 139 IAAALILQEVLD 150 +AAAL+LQ+ L+ Sbjct: 126 VAAALMLQDYLN 137 >gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis ATCC 700779] gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis ATCC 700779] Length = 136 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + + + E L + T + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM 16841] gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SD A + R+ K+ Q+ + I N+ ++G Sbjct: 3 ILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R + Sbjct: 63 PKNMNNTEGERCEKTKEF-KEMLERRTGLNVILWDERLTTVSADKHMMESGIRREDRKKF 121 Query: 136 VDSIAAALILQEVLDRISF 154 VD IAA ILQ LD ++ Sbjct: 122 VDEIAAVFILQGYLDYLAM 140 >gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg] gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg] Length = 150 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+ +G+AISD + A + RK K+ QT + I + ++G Sbjct: 3 IMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + F ++ R+ +P V WDERLTTV+A Q+L VS KK+++ Sbjct: 63 PKNMNNTIGERAEKSEEFAEHL-RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKMEV 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AA ILQ LD +S Sbjct: 122 VDKLAAVFILQGYLDYLS 139 >gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC 367] gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367] Length = 145 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 4/144 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 + +D+G++ +G+A+SD G + + Q L+ + I + ++ F++GLP Sbjct: 3 LMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN S GPR +++ + +M+ + +P F DERLTTV A+++L++ + SR+KR Q Sbjct: 63 KNMNNSLGPRAEASKRY-GDMLTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRKQV 121 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 +D +AA LILQ LDR L K Sbjct: 122 IDKLAAGLILQNYLDRHGKLTREK 145 >gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956] gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956] Length = 145 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+G+K +G+A SDP A + + ++ LE ++ + + +A F++GLP N Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + +D Sbjct: 65 MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 124 ELAATLILQNYLD 136 >gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246] gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str. Rustic] gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246] gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str. Rustic] Length = 154 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 5/149 (3%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63 +++ + L PN P+ +ID G+K++G+A+S+ R A P + + KK+ T+L L+ I Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + IIGLP++M+G+ + + F + + + +P DERLTT +A +L Sbjct: 64 EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELA-KSINLPIYLQDERLTTKAANNLLK 122 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 V RK R D++AA++IL+ VLD I Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151 >gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae MTU5] gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia massiliae MTU5] Length = 165 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 4/155 (2%) Query: 1 MSILLIEDL---VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57 ++I++I++L + L PN P+ +ID G+K++G+A+S+ R A P + Sbjct: 9 ITIMIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVIT 68 Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 LL+ I + IIGLP+NM+G+ + + F + + + +P DERLTT + Sbjct: 69 SLLNIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAEEL-AKSINLPIYLQDERLTTKA 127 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 A L V RK R D++AA++IL+ VLD I Sbjct: 128 ANNFLKSFGVKRKDRNNNDDAVAASMILETVLDSI 162 >gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334] gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334] Length = 139 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii Rt8.B1] gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii Rt8.B1] Length = 139 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+AISD A + R + + I + I+GLP N Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137 M+G+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + +D Sbjct: 63 MSGTLGPQGQKVVRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVID 121 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 122 KLAAVLILQNYLD 134 >gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a] Length = 147 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 + +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP Sbjct: 4 LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR + Sbjct: 64 KNMNNTSGPRVEAAKAY-GELLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA+LILQ LD Sbjct: 123 IDKLAASLILQNYLD 137 >gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC 27560] gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC 27560] Length = 142 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A++DP A + R K+ +T + + NI ++G Sbjct: 3 ILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ ++G+EG RV T+ F M++R+ + VF DERLTTV A +I+ + + ++ R + Sbjct: 63 PVMLSGTEGERVKKTKEF-GAMLERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRYKY 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD IAA +IL++ ++RI Sbjct: 122 VDQIAATIILEDYINRIE 139 >gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428] gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428] Length = 140 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID G RIG+A+SD AHP + K+V + + +T++++ I+GLP NM+ Sbjct: 6 GIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGLPRNMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS GP RAF + WDERLT+V+AQ+ L + K + +D +A Sbjct: 66 GSYGPAAEKVRAFAEKL-RAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREVIDQVA 124 Query: 141 AALILQEVLDRISFL 155 A LILQ LD + L Sbjct: 125 AQLILQGWLDSQALL 139 >gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae R6] gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae D39] gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae SP3-BS71] gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae SP6-BS73] gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae SP9-BS68] gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae SP11-BS70] gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus pneumoniae SP14-BS69] gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae SP18-BS74] gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae SP19-BS75] gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae Hungary19A-6] gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14] gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae JJA] gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae P1031] gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae 70585] gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae Taiwan19F-14] gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae CCRI 1974] gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae CCRI 1974M2] gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae BS455] gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae SP-BS293] gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae BS397] gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200] gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae D39] gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae SP11-BS70] gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus pneumoniae SP14-BS69] gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae SP18-BS74] gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae SP19-BS75] gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae SP3-BS71] gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae SP6-BS73] gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae SP9-BS68] gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14] gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae BS455] gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae SP-BS293] gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae BS397] gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200] Length = 139 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] Length = 147 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 + +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP Sbjct: 4 LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR + Sbjct: 64 KNMNNTSGPRVEAAKAY-GELLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA+LILQ LD Sbjct: 123 IDKLAASLILQNYLD 137 >gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna ATCC 29328] gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC 53516] gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna ATCC 29328] gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC 53516] Length = 137 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G + IG+AISDP A + RK + + I + ++ I+GLP NMN Sbjct: 6 GLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNMN 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR +DS+A Sbjct: 66 NTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVA 124 Query: 141 AALILQEVLD 150 A ILQ LD Sbjct: 125 ATYILQTYLD 134 >gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus JW/NM-WN-LF] gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 141 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I DLG IG+A+SD + A + + R+ + + ++ I ++ I+GLP N Sbjct: 3 IMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNGS G F+ ++ +++V +P DERLT+ A+Q L++ +VSRKKR Q +D Sbjct: 63 MNGSLGQMADQIMDFIKSL-EQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVIDK 121 Query: 139 IAAALILQEVLDR 151 +AA ILQ LDR Sbjct: 122 LAAVNILQTYLDR 134 >gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC 27755] gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC 27755] Length = 144 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G++ +G+A+SDP A + RK K+ +T + + + ++GL Sbjct: 3 IMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F MI R+ + V WDERLTTVSA++ LI+ V R+ R + Sbjct: 63 PKHMNNDIGDRAEKSMQF-GEMIGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRKKY 121 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 122 IDQIAAVFILQGYLD 136 >gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4] gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination [Thermoanaerobacter tengcongensis MB4] Length = 139 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G K IG+AISD A + RK + + + ++ ++GLP N Sbjct: 3 VLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 MNGS GP+ F + R+V +P VFWDERLTT+ A++ LI+ +++SR KR + + Sbjct: 63 MNGSIGPQGEKVIKFGEKL--REVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI 120 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 121 DKLAATIILQSYLD 134 >gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704] gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704] Length = 141 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+AISDP A + RK K+ +T + + I + ++GL Sbjct: 3 IMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R + Sbjct: 63 PKHMNNDIGDRAERSLEF-GKMLSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 121 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA ILQ LD I Sbjct: 122 IDKIAAVFILQGYLDSIC 139 >gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens 16/4] Length = 142 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT---QTALELLSFITTENIAAFIIGL 75 I +D GTK +G+AISDP A + R++ + T + + + I+G Sbjct: 4 ILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKIILGY 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+ SEG R T F +++++V +P DERLTTV A +IL + V++K R + Sbjct: 64 PRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDRKKV 122 Query: 136 VDSIAAALILQEVLD 150 +D IAAA+ILQ+ LD Sbjct: 123 IDQIAAAIILQDYLD 137 >gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 140 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G KRIG+AI+D R A P + + + AL++L +++ ++GLPLN Sbjct: 4 IMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPLN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MNG+EG + R F+ I + DERLTTV A+++LI + ++SR+KR D Sbjct: 64 MNGTEGGMAETVRKFIEK-IKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKGIKD 122 Query: 138 SIAAALILQEVLD 150 + AALILQ LD Sbjct: 123 KVVAALILQTYLD 135 >gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris ATCC 700780] gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris ATCC 700780] Length = 136 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + + Q + L + + + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 145 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 83/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+G+K +G+A SDP A + + ++ LE ++ + + +A ++GLP N Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + +D Sbjct: 65 MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 124 ELAATLILQNYLDR 137 >gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae INV104] Length = 136 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis ZC1] gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis ZC1] Length = 138 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+A+SD G + + + ++ ++ + E I F++G P Sbjct: 3 IMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q + Sbjct: 63 KNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVMILQGYLD 135 >gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM 12680] gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM 12680] Length = 144 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G KRIG+AISD A P + R + + T + ++GLPLN Sbjct: 3 ILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NGS G + + + + + + WDERL+T + Q +L++ + SR+KR + VD Sbjct: 63 LNGSRGEKAAQSAKLAQELKEH-LSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVVDK 121 Query: 139 IAAALILQEVLDRIS 153 +AAA ILQ LDRI Sbjct: 122 LAAAYILQGYLDRIG 136 >gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon 078 str. F0262] Length = 254 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 4/131 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G K IG+A++DP A P + R+ K+ ++ E+ + ++ ++ +IGL Sbjct: 3 IMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ +EG R R F ++ ++V VP + DERLTT++A++IL + V R+++ + Sbjct: 63 PLNMDETEGERAEKAREFAA-LLAKRVLVPIEWVDERLTTIAAREILDESGVPREEQKRM 121 Query: 136 VDSIAAALILQ 146 +D +AA LIL+ Sbjct: 122 IDQVAAQLILE 132 >gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 140 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGL 75 + +D G+K +G+AISDP A + RK+ + QT + ++ ++ ++G Sbjct: 3 VLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + F M++R+ + + WDERLTTV A + L++ +V R+ R Q Sbjct: 63 PKNMNNTIGERAQKSLEF-KEMLERRTGLEVIMWDERLTTVEANRTLMEASVRRENRKQY 121 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ LD +S Sbjct: 122 LDQLAAVFILQGYLDSLS 139 >gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321] Length = 136 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 10/137 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134 MN + GPRV +++A+ + + D +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 MNNTSGPRVEASQAYGAKLEELFD----LPVDYQDERLTTVAAERMLIEQADISRNKRKK 117 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 118 VIDKLAAQLILQNYLDR 134 >gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 136 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP A + K+ + + L + + F+IGL Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEII---KINEDKQDFGFDRLAELVKQYQVDRFVIGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134 P NMN + GPRV +++A+ + I+ ++P + DERLTTV A+++LI+ ++SR KR + Sbjct: 59 PKNMNNTSGPRVEASKAY-GDRIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 117 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 118 VIDKLAAQLILQNYLD 133 >gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM 2876] gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM 2876] Length = 144 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G++ +G+A+ DP A + RK K+ QT + N ++GL Sbjct: 3 IIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G RV T F ++R+ + V WDERLTTV+A +++ + R+ R + Sbjct: 63 PKNMNNTSGDRVDKTMDF-KAALERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRKEY 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD IAA LILQ LD ++ Sbjct: 122 VDMIAAQLILQGYLDSLA 139 >gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15] gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15] Length = 140 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 17/140 (12%) Query: 21 SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 +D+G+K IG+A+SD ++ P + K+ L + I + Sbjct: 6 GLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKR-------LEAIIKEYGVEII 58 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +IG P NMNGS GPR ++ AF I+ + + V DERLTT+ A+++LID +VSRKK Sbjct: 59 VIGHPKNMNGSIGPRAEASEAFARE-IETQTGLSTVLVDERLTTMQAERMLIDADVSRKK 117 Query: 132 RIQKVDSIAAALILQEVLDR 151 R Q +D +AA +ILQ LDR Sbjct: 118 RKQVIDKMAAVMILQSYLDR 137 >gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC 35185] gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185] gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC 35185] gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185] Length = 149 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 72/136 (52%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G + IG+A SD A + RK + L + FI+GLP N Sbjct: 5 VLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG++G R R F + + VFWDERL+TV+A++ LI +VSR KR + +D Sbjct: 65 MNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKVIDK 124 Query: 139 IAAALILQEVLDRISF 154 +AA ILQ LD + Sbjct: 125 MAAVFILQGYLDNLGM 140 >gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305] gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305] Length = 155 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTKR+GLAIS P + A P + R + Q + ++ + ++GLP++M+ Sbjct: 13 GIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRVKGLVVGLPVHMS 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEG + R F + +P ++WDER T+ A L +S+ KR + +D +A Sbjct: 73 GSEGGKAKEARVF-GDWCGEITQLPVIYWDERFTSALADNHLRQSTMSQAKRKKHLDKLA 131 Query: 141 AALILQEVLD 150 A ++LQ L+ Sbjct: 132 AQVMLQSFLE 141 >gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597] gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564] gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564] gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597] Length = 136 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae NEM316] gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316] Length = 139 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP A + + ++ + L+ + E + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + I +P + DERLTTV A+++L++ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKV 121 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 122 IDKLAAQLILQNYLDRM 138 >gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON] gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON] Length = 144 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G IG+AISD A RK+ ++ + +IGLP N Sbjct: 3 ILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 MNGS GP+ AF + D + V WDERL+TV+AQ+ LI+ +VSR KR + +D Sbjct: 63 MNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVID 122 Query: 138 SIAAALILQEVLD 150 +AA ILQ LD Sbjct: 123 KMAAVYILQGYLD 135 >gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905] gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905] Length = 138 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+A+SD G + + + ++ ++ + E I F++G P Sbjct: 3 IMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q + Sbjct: 63 KNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVMILQGYLD 135 >gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA] gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA] Length = 142 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+AISD A + RK K+ +T + + I + ++G Sbjct: 3 IMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + AF +M++R+ + + WDERLTTV A++ LI+ NV R++R + Sbjct: 63 PKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERKKY 121 Query: 136 VDSIAAALILQEVLDRI 152 VD IAA ILQ LD + Sbjct: 122 VDKIAAIFILQGYLDSV 138 >gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis 101-4-CHN] gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis 101-4-CHN] Length = 146 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 3/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLPLN 78 +D+G+K +G+A SDP A + + + + + +A F++GLP N Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV ++R + + R +P F DERLTTV A ++L+ + +VSR+K+ + +D Sbjct: 65 MNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQKKVID 124 Query: 138 SIAAALILQEVLDR 151 +AA+LILQ LDR Sbjct: 125 ELAASLILQNYLDR 138 >gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273] gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272] gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272] gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273] Length = 137 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+A+SD G + ++ + +S + + ++GLP Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGFLD 135 >gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str. Malish 7] gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7] Length = 154 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 5/149 (3%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63 +++ + L PN P+ +ID G K++G+A+S+ R A P + + KK+ T+L L+ I Sbjct: 6 LQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + IIGLP++M+G+ + + F + + + +P DERLTT +A +L Sbjct: 64 EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLK 122 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 V RK R D++AA++IL+ VLD I Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151 >gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025] gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025] Length = 139 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + + + E L+ + + F++GLP Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 NMN + GPRV +++A+ + + D +P + DERLTTV A+++L++ +VSR KR Sbjct: 63 KNMNNTSGPRVEASQAYGKKIKELFD----LPVEYQDERLTTVQAERMLVEQADVSRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis Ellin345] gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis Ellin345] Length = 153 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D GT+RIGLA+SDP A L+RK L S I I ++GLPL Sbjct: 11 ILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGLPLR 70 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G++ R F ++++ +P WDER T+V A ++L + +S KKR + VD Sbjct: 71 LSGADSSSTEKAREFAA-WLEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEAVDR 129 Query: 139 IAAALILQEVLDR 151 ++A LILQ L+R Sbjct: 130 LSAVLILQAFLER 142 >gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae TIGR4] gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae SP23-BS72] gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669] gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae BS457] gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae BS458] gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B] gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae SP23-BS72] gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669] gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae OXC141] gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae INV200] gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae BS458] gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae BS457] gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375] gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570] gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae GA17545] gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301] gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317] gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368] gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae GA47901] Length = 136 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98] Length = 137 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 11/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF------ITTENIAAFI 72 I +D+GTK +G+AISD L K+ + E+ F + N+ + Sbjct: 3 ILGLDVGTKTVGVAISDE---MGWTAQGLETIKINEER-EIFGFDRVSELVKQYNVDKIV 58 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Sbjct: 59 VGLPKNMNGTIGPRGEACQRYAESLREL-LQLEVILWDERLSTMAAERLLISADVSRKKR 117 Query: 133 IQKVDSIAAALILQEVLD 150 Q VD +AA +ILQ LD Sbjct: 118 KQVVDKMAAVVILQGYLD 135 >gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1] gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1] Length = 145 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D GTK +G+A+SD G + ++ + + L I + ++G P Sbjct: 8 ILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIVVGFP 67 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +T+ F + + +P V WDERL+T++A+++LI +VSRKKR + + Sbjct: 68 KNMNGTIGPRGEATQRFAEQ-VKQTFSLPVVLWDERLSTMAAERMLIAADVSRKKRKKVI 126 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 127 DKMAAVMILQSYLD 140 >gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM 15053] gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM 15053] Length = 145 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G K +G+A+SDP A + RK K+ QT + I + ++GL Sbjct: 5 IMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R + Sbjct: 65 PKHMNNDIGDRAEQSLEF-GEMLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 123 Query: 136 VDSIAAALILQEVLDRI 152 +D IAA ILQ LD I Sbjct: 124 IDKIAAVFILQGYLDSI 140 >gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM 16795] gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM 16795] Length = 141 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SD A + R+ + EL + I + + GLP N Sbjct: 6 IMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ +I + + FWDERLTTV+A++ LI+ +VSRKKR + +D Sbjct: 66 MNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKVIDM 124 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 125 LAAVIILQGYLD 136 >gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8] gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8] Length = 140 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R G+AISD A P + + A ++ ++GLP+N Sbjct: 3 ILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPIN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG++G R AF M+ V V WDER TTV+A Q L + NV KKR VD+ Sbjct: 63 MNGTKGERAEKCEAFAE-MLRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVVDT 121 Query: 139 IAAALILQEVL 149 +AA +IL+ L Sbjct: 122 VAATIILESYL 132 >gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC 14019] gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC 14019] Length = 166 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 IDLG R+G A+SDP FAHP + + A+E +L+ I +++ +IGLPL + Sbjct: 15 GIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQL 74 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127 +G+EG R + N++ R ++P V W DERLTTV+A + L+D + Sbjct: 75 DGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDADF 134 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 S +K VD +A LILQ +D Sbjct: 135 STRKHRPMVDQQSAVLILQSAID 157 >gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L] gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L] Length = 143 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 71/132 (53%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G+K IG+A SD A + RK L + T + ++G P + Sbjct: 5 ILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPRH 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG + V AF+ + + + FV+WDERLTT+ A+Q+L+ V R+KR Q VD Sbjct: 65 MNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQFVDK 124 Query: 139 IAAALILQEVLD 150 +AA LILQ LD Sbjct: 125 MAAILILQNYLD 136 >gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon 107 str. F0167] Length = 143 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72 + I +D G+K IG+AISD A P + R K+ ++ + + ++I + Sbjct: 2 KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP+NM+G G R T FV + R V +P V DERLTTV A +IL + V ++ R Sbjct: 62 VGLPINMDGRSGERAALTLEFVEKLKLR-VDIPIVMQDERLTTVEADEILDESGVKKQDR 120 Query: 133 IQKVDSIAAALILQEVLDR 151 Q +D IAA +IL+E +++ Sbjct: 121 KQFIDQIAAGIILKEYMEK 139 >gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis URRWXCal2] gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 154 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 5/145 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAA 70 L PN P+ +ID G+K++G+A+S+ R A P ++ KK+ T+L LS I + Sbjct: 13 LIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSL--LSIIEKYKVCG 70 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 +IGLP++M+G+ + + F + + + +P DERLTT +A L V RK Sbjct: 71 VVIGLPIDMSGAVTEQTNIVMKFAEELA-KSINLPIYLQDERLTTKAANNFLKSFGVKRK 129 Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155 R D++AA++IL+ VLD + L Sbjct: 130 DRNNNDDAVAASMILETVLDSMKKL 154 >gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143] gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143] Length = 139 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + Q + + + + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM 20016] gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112] gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23] gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM2-3] gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri SD2112] gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM4-1A] gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016] gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri] gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23] gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM2-3] gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri SD2112] gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM4-1A] Length = 147 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLP 76 + +D+G+K +G+++SDP A + + + + + E +A F+IGLP Sbjct: 3 LMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN +EGPRV +++ + + R +P F DERLTTV A ++L+ + ++SR K+ + Sbjct: 63 KNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKKV 122 Query: 136 VDSIAAALILQEVLDR 151 +D +AA ILQ LDR Sbjct: 123 IDEVAATFILQSYLDR 138 >gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC 14018] Length = 156 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 IDLG R+G A+SDP FAHP + + A+E +L+ I +++ +IGLPL + Sbjct: 5 GIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127 +G+EG R + N++ R ++P V W DERLTTV+A + L+D + Sbjct: 65 DGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDADF 124 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 S +K VD +A LILQ +D Sbjct: 125 STRKHRPMVDQQSAVLILQSAID 147 >gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300] gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300] Length = 139 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + Q + + + + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae 2603V/R] gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae A909] gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 18RS21] gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae H36B] gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae CJB111] gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 515] gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 2603V/R] gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae A909] gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 18RS21] gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 515] gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae CJB111] gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae H36B] gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae ATCC 13813] Length = 136 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 4/135 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ + L+ + E + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + I +P + DERLTTV A+++L++ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVID 120 Query: 138 SIAAALILQEVLDRI 152 +AA LILQ LDR+ Sbjct: 121 KLAAQLILQNYLDRM 135 >gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus B316] gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus B316] Length = 145 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+AISD A R + RK K+ +T + I + ++GL Sbjct: 3 IMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ + R F + I+R+ +P V WDERLTTV A +I+ + + + R + Sbjct: 63 PLNMDQTPSERSQLCLEF-KDKIERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRKEY 121 Query: 136 VDSIAAALILQEVLD 150 VD IAA +ILQ+ LD Sbjct: 122 VDMIAAQIILQDYLD 136 >gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] Length = 143 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 70/131 (53%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+DLG IG+A+SD A + R + L + + A + GLP +MN Sbjct: 6 SLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGLPKHMN 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR + +D +A Sbjct: 66 GDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKVIDKMA 125 Query: 141 AALILQEVLDR 151 A ILQ LDR Sbjct: 126 AVYILQGFLDR 136 >gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3] gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3] Length = 130 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 3/129 (2%) Query: 24 LGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLNMNG 81 +GTK +G+A+SD G + ++ + +S + N+ ++GLP NMNG Sbjct: 1 MGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNG 60 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 + GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +D +AA Sbjct: 61 TIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAA 119 Query: 142 ALILQEVLD 150 +ILQ LD Sbjct: 120 VVILQGFLD 128 >gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444] gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC 15444] Length = 151 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GT IG+A +D R A P +++KK+ + LL I+GLPLN++ Sbjct: 17 GIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLIVGLPLNVD 76 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS GPR S R V +++ + +P F DER ++ A I+ +R+ R ++D+ A Sbjct: 77 GSMGPRAQSVRTLVSSLLKVR-DLPVTFQDERYSSAEAGDIMRAAGATRRNREARIDASA 135 Query: 141 AALILQEVLDRI 152 AA+ILQ+ L R+ Sbjct: 136 AAVILQDALSRL 147 >gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88] gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88] Length = 138 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G + IG+AISDP A + R + E+ + + GLP N Sbjct: 3 ILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F +++ +++ + WDERLTTV+A + +I+ ++SR KR + VD Sbjct: 63 MNGTLGPQSEKVTEFC-DILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRI 152 IAA ILQ LD + Sbjct: 122 IAAIYILQGYLDSV 135 >gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira defluvii] gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus Nitrospira defluvii] Length = 203 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q I +ID G+KRIG A+SD A P R+ + + + ++G+ Sbjct: 3 GQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVGM 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL ++G GP F+ +++ + VP + WDER+TT +A+ +LI +V R+KR Sbjct: 63 PLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKGI 121 Query: 136 VDSIAAALILQEVL 149 VD IAAA++LQ L Sbjct: 122 VDRIAAAILLQSYL 135 >gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase Length = 150 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +DLGTK +G+A+SD A + + L LS I I ++G P Sbjct: 5 ILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 N NG+ GPR +++ F +++ VP V WDERLTT +A++ LI +VSR+KR + + Sbjct: 65 KNXNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKVI 123 Query: 137 DSIAAALILQEVLDRIS 153 D AA ILQ LD ++ Sbjct: 124 DKXAAVXILQGYLDSLN 140 >gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis DSM 17678] gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis DSM 17678] Length = 138 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G IG+A+SD A + R L I + + GLP N Sbjct: 6 IMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F ++I ++ + FWDERLTTVSA+++LI+ +V RK R + +D Sbjct: 66 MNGTIGPQAEKVIKFC-DLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKVIDK 124 Query: 139 IAAALILQEVLDRI 152 +AA LILQ LD I Sbjct: 125 LAAVLILQGYLDSI 138 >gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2] gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2] Length = 138 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D G + IG+A+SD A + +++ + + + ++GLP NMN Sbjct: 5 GLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLPKNMN 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 + GPR + AF + + + +P WDERLTTVSA++ L++ +VSRKKR +D +A Sbjct: 65 NTIGPRGEISMAFAEQL-QQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVIDKMA 123 Query: 141 AALILQEVLD 150 A LILQ LD Sbjct: 124 ATLILQNYLD 133 >gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51] gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium hafniense DCB-2] gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense DCB-2] Length = 142 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G + IG+A+SD A + R + EL + + + ++G P N Sbjct: 3 IMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYPKN 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR +T F ++ + +P WDERL+T+ AQ+ L++ +VSR KR Q +D Sbjct: 61 MNGTLGPRAQATEEFAQ-ILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVIDK 119 Query: 139 IAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 120 MAAVFILQGYLDYI 133 >gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44] gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44] Length = 137 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ + +S + N+ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Q + Sbjct: 63 KNMNGTIGPRGEACQQYAESLREL-LQLEVILWDERLSTMAAERLLISADVSRKKRKQVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 122 DKMAAVVILQGYLD 135 >gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b] gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b] Length = 140 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + +D+G+K IG+A+SD A + + L FI ++ ++G P Sbjct: 4 VMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGHP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR ++ AF + + +P V DERLTT+ A+++LI +VSRKKR + Sbjct: 64 KNMNGTVGPRGEASEAFAEAFTE-QTGLPCVLVDERLTTMQAERMLISADVSRKKRKAVI 122 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LDR Sbjct: 123 DKMAAVMILQNYLDR 137 >gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans UA159] gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159] Length = 139 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+G+K +G+A+SDP A + + + + + L+ + + F++GLP Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 NMN + GPRV +++A+ + + D +P + DERLTTV A+++L++ +VSR KR Sbjct: 63 KNMNNTSGPRVEASQAYGKKIKELFD----LPVEYQDERLTTVQAERMLVEQADVSRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ LDR+ Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138 >gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC 6249] gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis ATCC 49296] gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease [Streptococcus oralis Uo5] gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC 6249] gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis ATCC 49296] gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease [Streptococcus oralis Uo5] Length = 136 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + + Q + + + + + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 156 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 5/153 (3%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63 +++ + L PN P+ +ID G+K++G+A+S+ R A P + + KK+ T+L L+ I Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122 + +IGLP++M+G+ + + F + + + +P DERLTT +A L Sbjct: 64 EKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAANNFL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 V RK R D++AA++IL+ VLD I L Sbjct: 124 KSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156 >gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7] gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7] Length = 140 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 4/142 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R G+A+SD A P + + A ++ + I+GLP+N Sbjct: 3 ILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPIN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG++G R F +M+ V V WDER TTV+A + L + NV KKR VD+ Sbjct: 63 MNGTKGVRAEKCEEFA-DMLRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVVDT 121 Query: 139 IAAALILQEVLDRISFLESSKG 160 +AA +IL+ L +F KG Sbjct: 122 VAATIILESYL---AFRSKHKG 140 >gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT] gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT] Length = 135 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G + IG+A+SDP A + RK V + EL + I GLP N Sbjct: 3 VLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G + F ++ ++ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 63 MNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVDK 121 Query: 139 IAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 122 MAATYILQGYLDSI 135 >gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC 35037] gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC 35037] Length = 139 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G+K +G+AISDP A + + + Q + + + + F++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAQLILQNYLDR 137 >gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5] gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae ESF-5] Length = 154 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 5/149 (3%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63 +++ + L PN P+ +ID G+K++G+A+S+ A P + + KK+ T+L L+ I Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSL--LNII 63 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + IIGLP++M+G+ + + F + + + +P DERLTT +A +L Sbjct: 64 EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLK 122 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 V RK R D++AA++IL+ VLD I Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151 >gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri ATCC 11577] gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii ATCC 8290] gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri ATCC 11577] gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii ATCC 8290] gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 144 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 82/136 (60%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 + +D+G+K +G+A+SD G + ++ + LE ++ + + F++GLP Sbjct: 3 LMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135 NMN S GPR ++ + + +++K +P F DERLTTV AQ++L + ++SR+KR + Sbjct: 63 KNMNNSLGPRAEASEQY-GDRLEKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAGLILQNYLDR 137 >gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus Lc 705] gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705] gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus MTCC 5462] Length = 144 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 + +D+G++ +G+A+SDP A + + + Q L+ L +T + AF++GLP Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 63 KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAQMILQNYLD 136 >gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM 20544] gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM 20544] Length = 138 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 4/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G + IG+A+SD A + RK + L + + + GLP NM+ Sbjct: 6 SLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGLPKNMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G+EG R + F+ + +K Y V FWDERL+TV+A + LI+ +VSR+KR + +D Sbjct: 66 GTEGDRCAIVKEFMAEV--KKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKVIDK 123 Query: 139 IAAALILQEVLD 150 +AA ILQ LD Sbjct: 124 MAAVFILQGFLD 135 >gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455] gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455] Length = 140 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+GT RIG+A+SDP FA V K EL + ++GLP+ Sbjct: 4 IICLDVGTVRIGVAVSDPLGMFAQG--IAVWKADGPWLDELERAFERYDTGCLLVGLPIR 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ GP + V + R V +WDER +T +A L++ NVSR+KR Q VD Sbjct: 62 EDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQSVDK 121 Query: 139 IAAALILQEVLD 150 IAAA+ILQ +D Sbjct: 122 IAAAVILQSYMD 133 >gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus HN001] gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus GG] gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus HN001] gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG] gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus GG] Length = 144 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 + +D+G++ +G+A+SDP A + + + Q L+ L +T + AF++GLP Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 63 KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAQMILQNYLD 136 >gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137 str. F0430] Length = 142 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 71/131 (54%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G IG+A+SD A + R L + + + A + GLP +MN Sbjct: 6 SLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGLPKHMN 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R RAF+ R V +WDERL+TV+A + L++ +VSRKKR + +D +A Sbjct: 66 GDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKMA 125 Query: 141 AALILQEVLDR 151 A ILQ LDR Sbjct: 126 AVYILQGFLDR 136 >gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 155 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 8/139 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN------IAAF 71 I S+D G RIG+AISD + A + KKV +T +L+ I I Sbjct: 9 IVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIEEI 68 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLPL M+G +G + FV + +P V WDERLTTV A++ L + + +RKK Sbjct: 69 VVGLPLLMSGKKGFQADEVLHFVE-LFKAATPIPIVTWDERLTTVQAERALREGSFNRKK 127 Query: 132 RIQKVDSIAAALILQEVLD 150 R + +D++AA LILQ LD Sbjct: 128 RSKVIDAVAAVLILQNYLD 146 >gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis Bay] gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis Bay] Length = 163 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 67/136 (49%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N + ID G KR+GLA++D G R A PRP L R E+ E + A ++GL Sbjct: 28 NVRLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGL 87 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ M+G E R I K + DERLT+ AQ L + VS KK K Sbjct: 88 PIAMDGEETDLSRQVRNLARK-ITSKTGLKVHLMDERLTSAEAQARLREAGVSSKKMKGK 146 Query: 136 VDSIAAALILQEVLDR 151 +DS AA LIL+ L R Sbjct: 147 LDSGAAVLILEAYLGR 162 >gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA] gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA] Length = 138 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A+SD A P + RK K+ +T + + + ++G Sbjct: 3 ILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R + Sbjct: 63 PKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA++ILQ LD Sbjct: 122 IDQVAASMILQGYLD 136 >gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL B-14911] gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL B-14911] Length = 111 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%) Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 +L I +++ ++GLP NMNG+ GPR +++ F + +R +P V WDERLTT++ Sbjct: 17 QLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAGEL-ERLFGLPVVLWDERLTTMA 75 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 A+++L++ +VSRKKR + +D +AA++ILQ LD Sbjct: 76 AERVLLEADVSRKKRKKVIDKMAASMILQGYLD 108 >gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus C3-41] gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus C3-41] Length = 135 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 79/132 (59%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+A+SD G + + + ++ ++ + E I F++G P N Sbjct: 2 GLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPTN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSR+KR Q +D Sbjct: 62 MNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVIDK 120 Query: 139 IAAALILQEVLD 150 +AA +I+Q LD Sbjct: 121 MAAVMIVQGYLD 132 >gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5] Length = 150 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 + +D G+K +G+A+SDP A + RK K+ +T + I+ + ++G Sbjct: 3 VLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + F M++++ +P V WDERLTT++A + L + V ++ R Q Sbjct: 63 PKNMNNTVGERAEKSLEF-KEMLEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRKQY 121 Query: 136 VDSIAAALILQEVLDRISF 154 +D +AA ILQ LD ++ Sbjct: 122 LDQVAAVFILQGYLDAAAY 140 >gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC 3502] gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A str. ATCC 19397] gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A str. Hall] gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F str. Langeland] gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum NCTC 2916] gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf] gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1 str. Okra] gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3 str. Loch Maree] gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str. Kyoto] gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4 str. 657] gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A str. ATCC 19397] gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A str. Hall] gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F str. Langeland] gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1 str. Okra] gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3 str. Loch Maree] gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum NCTC 2916] gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf] gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2 str. Kyoto] gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4 str. 657] gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F str. 230613] Length = 137 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I +D+G + IG+AISDP F +R+K LE + I + + + GLP Sbjct: 3 ILGLDIGDRTIGIAISDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 121 KVAATYILQGYLDSLS 136 >gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii RML369-C] gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU 85-389] gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C] gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU 85-389] Length = 154 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +++ + L PN P+ SID G+K+IG+AIS+ R A P + LL I Sbjct: 6 LQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLLEKIEQ 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 +IGLP++M+G + + F + + + +P DERLTT +A L Sbjct: 66 YKACGIVIGLPIDMSGMQTEQSAIVIKFAEEL-TKSINLPIYLQDERLTTKAANNFLKSF 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + RK+R D++AA++IL+ VL+ I+ L Sbjct: 125 GIKRKERNNNDDAVAASMILETVLNSINKL 154 >gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis ATCC 49540] gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis ATCC 49540] Length = 147 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+A+SDP A + + + ++ ++ I + +A F++GLP N Sbjct: 5 GLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 MN +EGPRV ++ + + R +P F DERLTTV A ++L+ + ++SR K+ + +D Sbjct: 65 MNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124 Query: 138 SIAAALILQEVLDR 151 +AA ILQ LDR Sbjct: 125 EVAATFILQSYLDR 138 >gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium D16] gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium D16] Length = 140 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID G G+AISDP A + +K EL + + ++G P N Sbjct: 3 VMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+EGPR R F + P V WDER TTV A +IL + + KKR + VD+ Sbjct: 63 MDGTEGPRAQLYRDFAAQVAQATGLEP-VLWDERRTTVDAHRILAEGGKNAKKRKKTVDA 121 Query: 139 IAAALILQEVLD 150 +AA+LIL+ LD Sbjct: 122 VAASLILEGYLD 133 >gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402 065] Length = 137 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I +D+G + IG+AISDP F +R+K LE + I + + + GLP Sbjct: 3 ILGLDIGDRTIGIAISDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 121 KVAATYILQGYLDSLS 136 >gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] Length = 144 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76 + +D+G++ +G+A+SDP A + + + Q L L +T + AF++GLP Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 63 KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAQMILQNYLD 136 >gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Oribacterium sinus F0268] gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Oribacterium sinus F0268] Length = 141 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 78/134 (58%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I ++D G+K +GLAI+DP P + R+ K+ +T E+ + ++G Sbjct: 3 ILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +M+GSEG RV AF M+ +K+ +P +DERL+T+ A++IL + V + ++ + Sbjct: 63 PCHMDGSEGERVERVLAF-QEMLKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQKEV 121 Query: 136 VDSIAAALILQEVL 149 +D +AA +IL++ L Sbjct: 122 LDQVAAQVILEDYL 135 >gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile QCD-23m63] gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP08] gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP07] gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP08] gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP07] Length = 141 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SD A + R + EL + I + + + GLP N Sbjct: 6 IMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR + +D Sbjct: 66 MNGTLGPQGEKVIKFCE-LVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDM 124 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 125 LAAVIILQGYLD 136 >gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424] gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424] Length = 141 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73 ++ I +D G+K IG+A+SD G + ++V ++ + + E NI ++ Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDR 151 +D +AA LILQ LD+ Sbjct: 123 DVIDKMAAVLILQTYLDK 140 >gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS8232] gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes SSI-1] gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS10394] gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS6180] gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS9429] gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS2096] gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS10750] gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes str. Manfredo] gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes ATCC 10782] gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS10394] gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180] gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes MGAS9429] gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS2096] gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS10750] gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str. Manfredo] gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes ATCC 10782] Length = 139 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 10/139 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP A + K+ + E L + + F+I Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR Sbjct: 60 GLPKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLDR 151 + +D +AA LILQ L+R Sbjct: 119 KKVIDKLAAQLILQNYLNR 137 >gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 143 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 70/131 (53%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+DLG IG+A+SD A + R + L + + A + GLP +MN Sbjct: 6 SLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGLPKHMN 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR + +D +A Sbjct: 66 GDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKVIDKMA 125 Query: 141 AALILQEVLDR 151 A ILQ LDR Sbjct: 126 AVYILQGFLDR 136 >gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 136 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 81/134 (60%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + + Q + + + + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LDR Sbjct: 121 KLAAQLILQNYLDR 134 >gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU 86-1044] gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU 86-1044] Length = 148 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN------IAAF 71 I ID G KRIGLAISD A F KK+ +T L+ + + Sbjct: 5 IIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYELKEI 64 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G PL MNG G F + + + +P + WDERLT+V A++ +++ + +RKK Sbjct: 65 VVGFPLKMNGKAGFISDEVTLFAETL-SKALSIPIIKWDERLTSVQAERAMMEGSYNRKK 123 Query: 132 RIQKVDSIAAALILQEVLD 150 R +K+D I+A +ILQ LD Sbjct: 124 RTKKLDQISAVIILQNYLD 142 >gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC 10379] gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC 10379] Length = 142 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73 ++ I +D G+K IG+A+SD G + ++V ++ + + E N+ ++ Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD+++ Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142 >gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1] gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1] Length = 146 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SD A + R+ K+ +T + I I I+G Sbjct: 3 IMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN S G R T F M+ R+ + + WDERLTTV++++IL + V R+ R Sbjct: 63 PKNMNNSAGQRAEKTEQF-KEMLIRRTGLNVILWDERLTTVASERILQESGVRREHRKAV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 122 IDQVAAGLILQGYLD 136 >gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC 29799] gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC 29799] Length = 139 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G R G+AISDP A + +K A E+ + + ++G P N Sbjct: 3 IMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+EGPR RAF + P V WDER TTV A IL K+ + VD+ Sbjct: 63 MDGTEGPRAELYRAFAQQVGQVTGLTP-VLWDERRTTVEAHNILHASGKRMKQHKKTVDA 121 Query: 139 IAAALILQEVLDR 151 +AA LIL+ L R Sbjct: 122 VAATLILEGYLTR 134 >gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC 15579] gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC 15579] Length = 137 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 I +D+G + IG+A+SDP F +R+K LE + I + + + GLP Sbjct: 3 ILGLDIGDRTIGVALSDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F ++I V + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 121 KMAATYILQGYLDSLS 136 >gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae COH1] gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae COH1] Length = 136 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP A + + ++ + L+ + E + F++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPRV +++ + + I +P + DERLTTV A+++L++ ++SR KR + +D Sbjct: 62 MNNTSGPRVEASQVY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVID 120 Query: 138 SIAAALILQEVLDRI 152 +AA LILQ LDR+ Sbjct: 121 KLAAQLILQNYLDRM 135 >gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3] gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3] Length = 143 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D G R G+A+SDP A P + TQ + + ++GLP N Sbjct: 3 VMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GPR +AF ++ VP + +DER TT++AQ N KKR +D+ Sbjct: 63 MNGTLGPRAEKAQAFAK-ALEAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSIDA 121 Query: 139 IAAALILQEVLDRI 152 AA +ILQ+ LD + Sbjct: 122 AAATIILQDYLDSV 135 >gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis m4-4] Length = 138 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 81/135 (60%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+GT+ +G+A+SD G + +++ E + + E ++ ++GLP Sbjct: 3 IMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR +++ + + + K +P ++DERLTT+ A+++LI+ +VSR KR + + Sbjct: 63 KNMNNTMGPRGEASQRYGEGLRE-KFGIPVDYYDERLTTMQAERVLIEADVSRGKRKKVI 121 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LDR Sbjct: 122 DKMAAVMILQGYLDR 136 >gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus H19] gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus H19] Length = 142 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74 I +D+G++ +G+AISD A L + ++ + + +L+ I N++ +IG Sbjct: 4 HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q Sbjct: 64 LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD + Sbjct: 124 VIDKMAAVFILQGYLDSL 141 >gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787] gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787] Length = 143 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 + +D G+K +G+AISDP A + RK K+ QT + + + ++G Sbjct: 3 VMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN + G R + M++R+ +P + WDERLTT+ A++ LI+ V R+ R + Sbjct: 63 PKHMNNTIGDRAEKSLEL-KAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRKKY 121 Query: 136 VDSIAAALILQEVLDRI 152 VD IAA ILQ LD I Sbjct: 122 VDKIAAVFILQGYLDSI 138 >gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929] gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929] Length = 144 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 + +D+G+K +G+A+SD G + + + L+ +S + + F++GLP Sbjct: 3 LMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN S GPR +++ + + D K +P F DERLTTV AQ++L + +VSR KR + Sbjct: 63 KNMNNSLGPRAEASQQYGKRLED-KFNLPVDFEDERLTTVEAQRMLTEEADVSRAKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 122 IDKLAAGLILQNYLDR 137 >gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325] gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325] Length = 142 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIG 74 + I +D G+K IG+A+SD G + +++ ++ + + E N+ I+G Sbjct: 4 KRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIVG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 64 LPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRKN 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD+++ Sbjct: 124 VIDKMAAVLILQTYLDKLN 142 >gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus RF122] gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122] Length = 142 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74 I +D+G++ +G+AISD A L + ++ + + +L+ I N+ +IG Sbjct: 4 HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q Sbjct: 64 LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD + Sbjct: 124 LIDKMAAVFILQGYLDSL 141 >gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1 GAS] gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS5005] gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes MGAS5005] Length = 139 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 10/139 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP A + K+ + E L + + F+I Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR Sbjct: 60 GLPKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLDR 151 + +D +AA LILQ L+R Sbjct: 119 KKVIDKLAAQLILQNYLNR 137 >gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MW2] gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus COL] gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus JH9] gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus JH1] gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH130] gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus 55/2053] gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus 68-397] gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763] gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719] gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299] gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115] gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224] gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937] gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus ED98] gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117] gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus C160] gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WBG10049] gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M899] gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C427] gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus 132] gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M1015] gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754] gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819] gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MR1] gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796] gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus MN8] gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus COL] gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp. aureus JH9] gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp. aureus JH1] gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH130] gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus 55/2053] gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus 68-397] gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763] gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719] gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299] gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115] gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224] gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937] gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus ED98] gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C427] gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M899] gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WBG10049] gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus Btn1260] gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus C160] gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117] gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M1015] gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754] gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819] gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796] gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus MN8] gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp. aureus ED133] gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH60] gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS03] gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS00] gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus MRSA177] gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus O11] gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus O46] gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus T0131] gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp. aureus 21172] gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp. aureus 21189] gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp. aureus 21193] Length = 142 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74 I +D+G++ +G+AISD A L + ++ + + +L+ I N+ +IG Sbjct: 4 HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q Sbjct: 64 LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD + Sbjct: 124 VIDKMAAVFILQGYLDSL 141 >gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271] gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271] Length = 142 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 9/141 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL-----LSFITTENIAAFII 73 I +D+G+K +G+A+SD L ++ + A +L L + + +I Sbjct: 5 IMGLDVGSKTVGVAVSDL---MGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVI 61 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132 GLP NMN S GPR ++ A+ + + + + DERLTT A+++L+ + NVSRKKR Sbjct: 62 GLPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKR 121 Query: 133 IQKVDSIAAALILQEVLDRIS 153 Q +D +AA +ILQ LDRI+ Sbjct: 122 KQVIDKLAAVIILQNYLDRIN 142 >gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis F0399] gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis F0399] Length = 138 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 71/131 (54%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G IG+A+SD A + R + L + + + A + GLP +MN Sbjct: 2 SLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHMN 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R RAF+ V +WDERL+TV+A + L++ +VSRKKR + +D +A Sbjct: 62 GDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKMA 121 Query: 141 AALILQEVLDR 151 A ILQ LDR Sbjct: 122 AVYILQGFLDR 132 >gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC 11862] Length = 144 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 10/139 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFII 73 + +D+G++ +G+A+SD A + ++ + E E +A F++ Sbjct: 4 VMGLDVGSRTVGVAVSDLLGWTAQGVEII---RINEDEKEFGIARMKELVAQFQPTGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132 GLP NMN + GPRV + RA+ +++ +P F DERLTTV A+++L++ + SRKKR Sbjct: 61 GLPKNMNNTSGPRVDAARAY-GDLLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119 Query: 133 IQKVDSIAAALILQEVLDR 151 Q +D +AAALILQ LDR Sbjct: 120 KQVIDKLAAALILQNYLDR 138 >gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5] gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5] Length = 148 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 5/145 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+AISD A + RK K+ +T + ++ + ++G Sbjct: 3 IMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F +M+ R+ + + WDERLTTV A++ LI+ NV R+ R + Sbjct: 63 PKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRKKY 121 Query: 136 VDSIAAALILQEVLDRISFLESSKG 160 +D IAA ILQ LD + +L+ G Sbjct: 122 IDKIAAIFILQGYLDSV-YLQRQAG 145 >gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630] gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile QCD-66c26] gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP 107932] gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile QCD-63q42] gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC 43255] gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile QCD-76w55] gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile QCD-97b34] gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile QCD-37x79] gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196] gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291] gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile QCD-32g58] gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile] gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196] gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291] Length = 141 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G K IG+A+SD A + R + EL + I + + + GLP N Sbjct: 6 IMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR + +D Sbjct: 66 MNGTLGPQGEKVIKFCE-LVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDM 124 Query: 139 IAAALILQEVLD 150 +AA +ILQ LD Sbjct: 125 LAAVIILQGYLD 136 >gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii str. Madrid E] gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii] gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia prowazekii Rp22] Length = 156 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 5/149 (3%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63 +++ + L PN+P+ +ID G+K+IG+A+SD A P + V KKV T+ LL+ I Sbjct: 6 LQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITS--LLNII 63 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 + +IGLP++M+G + + F + + + +P DERLTT SA L Sbjct: 64 KKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAEKL-KQSLGLPIYLQDERLTTKSANNFLK 122 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 + RK R D++AA++IL+ VL+ I Sbjct: 123 SFGIKRKDRNHNDDAVAASMILEIVLNAI 151 >gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus casseliflavus ATCC 12755] gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus casseliflavus ATCC 12755] Length = 143 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G++ +G+A+SDP A + + + + L+ + E ++ F++GLP Sbjct: 3 IMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + Sbjct: 63 KNMNNTIGPRAEASMAY-GAAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAVMILQNYLD 136 >gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068] gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068] Length = 153 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D GT RIGLAI+DP ++FA P R+ A E AA+++GLP++ Sbjct: 12 GVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGLPVHTT 71 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSE + R F ++ +P +DER T+ A+++LI +SRK+R +D +A Sbjct: 72 GSESQKSTEARQFA-KQLEELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSHLDKLA 130 Query: 141 AALILQEVL 149 A ++L L Sbjct: 131 AQILLSAFL 139 >gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4] gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4] Length = 168 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D G K IGLA++D A P L + + +L I ++ I+GLP N Sbjct: 25 ILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPRN 84 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS GP R FV + + + +P F DERLTT A ++L + +++ +K+DS Sbjct: 85 MDGSYGPAAEKVRQFVLKL-KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKIDS 143 Query: 139 IAAALILQEVLD 150 AAA+ILQ LD Sbjct: 144 YAAAVILQSYLD 155 >gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus pseudintermedius HKU10-03] gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus pseudintermedius HKU10-03] gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus pseudintermedius ED99] Length = 142 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G++ +G+AISD A L + ++ + ++ L+ I EN+ +IG Sbjct: 4 HKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + +R + + WDERL+T++A++ L++ +VSR KR + Sbjct: 64 LPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRKK 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD ++ Sbjct: 124 VIDKMAAVFILQGYLDGLN 142 >gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 138 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 11/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+GTKRIG+A+SDP A P ++ K + S I ++N++ +IGLP+ Sbjct: 4 ILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGLPIT 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 + G +G +V T+ F + K Y+P VF DER TT A++ L +KK I+ Sbjct: 62 LKGLQGQQVEYTKEFAEKL---KHYIPHINIVFIDERFTTSLAEKHL--SQTKKKKNIKD 116 Query: 136 -VDSIAAALILQEVLDRISF 154 +DS++A ILQ LD +SF Sbjct: 117 YIDSLSAVFILQTYLDSLSF 136 >gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662] gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662] Length = 138 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+A+SD A P + RK K+ +T + + ++G Sbjct: 3 ILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R + Sbjct: 63 PKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA++ILQ LD Sbjct: 122 IDQVAASMILQGYLD 136 >gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174] gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174] Length = 140 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K +G+A+SDP A + RK K+ +T ++ + I ++G Sbjct: 3 ILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R F M+ ++ + + WDERLTTVSA + L++ V R+ R + Sbjct: 63 PKNMNNTVGERAEKALEF-GEMLKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRKEY 121 Query: 136 VDSIAAALILQEVLDRISF 154 +D IAA ILQ LD + Sbjct: 122 LDGIAAVFILQGYLDSLKM 140 >gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix rhusiopathiae ATCC 19414] Length = 144 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG+K G+A+SD +AHP L K + + L S I E + +G P Sbjct: 5 IIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGFPK 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 MN G R + F ++ V DERLT+V A + LID +VSRKKR + VD Sbjct: 65 MMNNDVGERAQISEEF-KKTLESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKVVD 123 Query: 138 SIAAALILQEVLDRISFLESS 158 +AA ILQ LD+ F+E + Sbjct: 124 QLAAVHILQTYLDKRRFMEGN 144 >gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1] gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1] Length = 138 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 79/134 (58%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITT-ENIAAFIIGLP 76 I +D+G+K +G+A+SD G + + + + ++ + + ++G P Sbjct: 3 IMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVGFP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GPR +++ + + +++ +P + WDERL+T A++IL++ +VSRKKR + + Sbjct: 63 KNMNNTIGPRAEASKVYAEEL-KKRLNLPVILWDERLSTAQAERILLEADVSRKKRKKVI 121 Query: 137 DSIAAALILQEVLD 150 D +AA++ILQ LD Sbjct: 122 DKMAASVILQGFLD 135 >gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS315] gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 136 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 10/137 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP A + K+ + E L + + F+IGL Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVIGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134 P NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR + Sbjct: 59 PKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 117 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ L+R Sbjct: 118 VIDKLAAQLILQNYLNR 134 >gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum WCFS1] gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum JDM1] gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus plantarum WCFS1] gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum JDM1] gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 144 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + +D+G++ +G+AISD A + + + + ++ ++ + E + F++GLP Sbjct: 3 LMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135 NMN + GPR + + + ++ + ++P F DERLTTV A+++L++ N SRKKR + Sbjct: 63 KNMNNTLGPRAEAAQHY-GELLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRKKV 121 Query: 136 VDSIAAALILQEVLDR 151 +D +AA+LILQ LDR Sbjct: 122 IDKLAASLILQNYLDR 137 >gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341] gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341] Length = 142 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73 ++ I +D G+K IG+A+SD G + +++ ++ + + E N+ ++ Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD+++ Sbjct: 123 DVIDKMAAVLILQTYLDKLN 142 >gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM 17241] gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM 17241] Length = 142 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R GLA D A P L K ++ + + ++ I+G P+N Sbjct: 3 ILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPIN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+EGPR F + + V VP WDER TTVSA L N KKR + +D Sbjct: 63 MNGTEGPRAQLCADFAGQLA-KLVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVIDE 121 Query: 139 IAAALILQEVLD 150 +AA +IL+ L+ Sbjct: 122 VAATIILESYLN 133 >gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 138 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77 I +D+G IG+AISD A P ++++ + A E + I EN + ++GLP Sbjct: 4 ILGLDVGDVWIGVAISDALMLTAQP-LMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + GP+ F + ++ KV + +V DER+TT+ A+Q+LI+ +V R+ R + + Sbjct: 63 NMNNTIGPQSEKVIKFAEKLKNKFKVEIEYV--DERMTTLMAEQVLIEGSVRRENRKKYI 120 Query: 137 DSIAAALILQEVLDRISF 154 D IAA ILQ LDRI+ Sbjct: 121 DKIAATYILQSYLDRINL 138 >gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] Length = 144 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 4/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 I +D+G++ +G+A+SD A + + + + ++ + + F++GLP Sbjct: 4 ILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVLGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN + GPRV ++RA+ ++ +P F DERLTTV A+++LI + + SRKKR + Sbjct: 64 KNMNNTSGPRVDASRAY-GELLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKRKKV 122 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 123 IDKLAAGLILQNYLDR 138 >gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str. Wilmington] gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str. Wilmington] Length = 156 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 1/147 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL+ I Sbjct: 6 LQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLLNIIEK 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + +IGLP++M+G + + F + + V +P DERLTT SA L Sbjct: 66 YQVCGIVIGLPIDMSGGVTKQTNIVMKFADKL-KQSVSLPIYLQDERLTTKSANNFLKSF 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152 + RK R D++AA++IL+ VL+ I Sbjct: 125 GIKRKDRNNNDDAVAASMILEIVLNAI 151 >gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae ACS-120-V-Col10a] gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae ACS-120-V-Col10a] Length = 140 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP F + K+ + A + L I + +I Sbjct: 3 IMGLDVGSKTVGVAISDP---FGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVI 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132 GLP NMN +EGPR ++R + +M +P + DERLTT +++ LI+ +VSRKKR Sbjct: 60 GLPKNMNNTEGPRAEASRHY-GDMAIELFDLPVFYQDERLTTQQSERFLIEAADVSRKKR 118 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA LILQ LD Sbjct: 119 KKVIDKLAAVLILQNYLD 136 >gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM 3645] gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM 3645] Length = 159 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLP 76 IA ID GT RIG+AI+DP R A P R+ K+ + E L+ + E I F++GLP Sbjct: 15 IAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKL--ERIVLFVVGLP 72 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++M+G+E + R F + R VP V++DER TT A+ L + ++++K+ + Sbjct: 73 VHMSGNESGKSGEARKF-GQWLGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKKKAVI 131 Query: 137 DSIAAALILQEVLD 150 D +AA ++L L+ Sbjct: 132 DKLAAQILLTAYLE 145 >gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii str. Iowa] gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa] Length = 154 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +++ + L PN P+ +ID G+K++G+A+S+ A P + LL+ I Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLLNIIEK 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + IIGLP++M+G+ + + F + + + +P DERLTT +A +L Sbjct: 66 YKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLKSF 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152 V RK R D++AA++IL+ VLD I Sbjct: 125 GVKRKDRNNNDDAVAASMILETVLDSI 151 >gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415] gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415] Length = 139 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 10/140 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76 + +D+G+K +G+AISDP A + + + + L + + F++GLP Sbjct: 3 LMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 NMN + GPRV +++A+ + + D +P + DERLTTV A+++L++ +VSR KR Sbjct: 63 KNMNNTSGPRVEASQAYGEKIAELFD----IPVDYQDERLTTVQAERMLVEQADVSRGKR 118 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D +AA LILQ L+R+ Sbjct: 119 KKVIDKLAAQLILQNYLERM 138 >gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 140 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 81/133 (60%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G++ +G+A+SDP A + + + + L+ + E ++ F++GLP N Sbjct: 2 GLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + +D Sbjct: 62 MNNTIGPRAEASMAY-GAAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVID 120 Query: 138 SIAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 KLAAVMILQNYLD 133 >gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium xylanolyticum LX-11] Length = 140 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G K IG+A+SDP A + R+ + E+ I + ++G P NMN Sbjct: 5 GLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFPKNMN 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139 G+ G + FV + ++ +P + WDERLTTV A ++L++ ++ R KR + +D + Sbjct: 65 GTIGAQGQKVINFVE-YLKEEIDLPIMLWDERLTTVEANRMLVENADMRRDKRKKVIDKL 123 Query: 140 AAALILQEVLD 150 AA +ILQ LD Sbjct: 124 AATIILQGYLD 134 >gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus lugdunensis M23590] gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus lugdunensis M23590] Length = 142 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 10/142 (7%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G+K +G+AISD A L + ++ + +E L + I + N+ +IG Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVIG 63 Query: 75 LPLNMNGSEGPR----VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 LP NMN S G R +H + M D KV + WDERL+T++A++ L++ +VSR+ Sbjct: 64 LPKNMNNSIGFRGEASIHYKELILEAMPDMKV----IMWDERLSTMAAERSLLEADVSRQ 119 Query: 131 KRIQKVDSIAAALILQEVLDRI 152 KR + +D +AA ILQ LD I Sbjct: 120 KRKKVIDKMAAVFILQGYLDSI 141 >gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 140 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G K IG+AISDP A + R + LE+ + ++G P NMN Sbjct: 5 GLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFPKNMN 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139 G+ G + FV ++ +++ +P + WDERLTTV A ++LI+ ++ R KR + +D + Sbjct: 65 GTIGSQGQKVINFVE-VLKKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKVIDKL 123 Query: 140 AAALILQEVLD 150 AA +ILQ LD Sbjct: 124 AATIILQGYLD 134 >gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149] gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149] Length = 148 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D GTK +G+AISD A + RK K+ +T + + + ++G Sbjct: 3 IMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R Q Sbjct: 63 PKHMNNDVGERAKKSLEF-KEMLVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRKQY 121 Query: 136 VDSIAAALILQEVLDRI 152 +D IAA ILQ LD I Sbjct: 122 IDKIAAVFILQGYLDSI 138 >gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes NZ131] gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131] Length = 139 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 10/139 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP A + K+ + E L + + F+I Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN + GPRV ++ + + I+ +P + DERLTTV A+++LI+ ++SR KR Sbjct: 60 GLPKNMNNTNGPRVDASITY-GSHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLDR 151 + +D +AA LILQ L+R Sbjct: 119 KKVIDKLAAQLILQNYLNR 137 >gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 144 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I ++D+G+ RIG+AISDP FA FL + L LL I N+ +IGLP Sbjct: 2 EHILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLTLL--IRKHNVKKVVIGLP 59 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + NG + + + ++ + F+ WDER TT AQ L D +S KK+ +V Sbjct: 60 IRTNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNRV 119 Query: 137 DSIAAALILQEVLD 150 D IAA ++LQ LD Sbjct: 120 DMIAATVLLQSYLD 133 >gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein [Rhodopirellula baltica WH47] Length = 173 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 7/141 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +AS+D GT RIG+AI DP A P + + A + +E IAA+++GLP++ Sbjct: 18 LASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFIDLAKSERIAAWVVGLPIH 77 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G E + +R F + +P +DER TTV+A + +RKK Q+VD+ Sbjct: 78 CDGGESDKSKESRKFA-AWLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTKQRVDA 136 Query: 139 IAAALILQEVLDRISFLESSK 159 +AA ++L+ SFLE+ + Sbjct: 137 VAAQVLLE------SFLEACR 151 >gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus haemolyticus JCSC1435] gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 142 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G+K +G+AISD A L + +++ +E L++ I N+ + +IG Sbjct: 4 HKILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD I Sbjct: 124 VIDKMAAVFILQGYLDSI 141 >gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma citri] Length = 139 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G+K +GLA S + Q A L ITTE + I+G P NMN Sbjct: 7 AVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNMN 66 Query: 81 GSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + GPR FV+ ++D + + V DERLTT A QI+++ N+SR+KR QK D Sbjct: 67 NTIGPRALMVSDFVNLLKQLLDPTITIHLV--DERLTTHQAHQIMLEANLSRQKRKQKKD 124 Query: 138 SIAAALILQEVLDR 151 S+AA LIL+ L + Sbjct: 125 SLAAQLILETYLHQ 138 >gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl] gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl] gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl] gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl] Length = 153 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q I ++D+G +RIG+AISD R A P + + +++ + ++ ++GL Sbjct: 3 DQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL M G GP+ + F + + + P +DERLT+V+A+Q+L ++ + K + Sbjct: 63 PLTMRGERGPQAEVVQRFA-DTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQ 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA++ILQ+ LD Sbjct: 122 IDQVAASIILQDYLD 136 >gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 142 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G+K +G+AISD A L + + + +E L+ I + +IG Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD IS Sbjct: 124 VIDKMAAVFILQGYLDSIS 142 >gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL J2-064] Length = 124 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + ++GLP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +V Sbjct: 40 VEKVVVGLPKNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADV 98 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 SRKKR + +D +AA +ILQ LD Sbjct: 99 SRKKRKEVIDKLAAVMILQSYLD 121 >gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485] gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485] Length = 142 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q I +D+G +RIG+AISD R A P + + ++ + + ++GL Sbjct: 3 EQTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL M G GP+ + + FV + + + P +DERLT+V+A+Q+L ++ V K ++ Sbjct: 63 PLTMRGEHGPQAAAIQRFV-DALAAVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQ 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA++ILQ+ LD Sbjct: 122 IDQVAASIILQDYLD 136 >gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC 27750] gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC 27750] Length = 140 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 10/144 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+A+SDP A P + RK K+ +T + I+ ++ ++G Sbjct: 3 IIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+ + G R + F ++R+ +P WDERLTTV A ++L + + R+ R Sbjct: 63 PKNMDDTIGERAKACEEFAA-ALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKTV 121 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 +D +AA IL+ ++ES + Sbjct: 122 IDQLAAVFILR------GYMESKQ 139 >gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase Length = 150 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 9/144 (6%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------E 66 KP++ I ID G RIGLA SD + A P + KK QT ++LL I+ Sbjct: 6 KPSR-ILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKC 64 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 I +IGLPL M+G G + F ++ + +P WDERLTTV A++ L + Sbjct: 65 EIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 ++RKKR + VD ++A++ILQ LD Sbjct: 124 LTRKKRSKVVDIVSASIILQSYLD 147 >gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912] gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912] Length = 157 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G RIG+A+SDP A L + I + ++GLP N Sbjct: 4 ILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGLPRN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+ S G + T F + R V VP WDERLTTV A++ LID + R +R + VD Sbjct: 64 MDASLGAQGRYTEEFAEKLRHR-VRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKVVDQ 122 Query: 139 IAAALILQEVLD 150 +AA ++LQ LD Sbjct: 123 VAATVLLQSYLD 134 >gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS10270] gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS10270] Length = 139 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 10/139 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +D+G+K +G+AISDP A + K+ + E L + + F+I Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN + PRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR Sbjct: 60 GLPKNMNNTNSPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118 Query: 133 IQKVDSIAAALILQEVLDR 151 + +D +AA LILQ L+R Sbjct: 119 KKVIDKLAAQLILQNYLNR 137 >gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a] gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction resolvase [Frankia alni ACN14a] Length = 205 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +D+G+ R+G+A SDPG A P L R K +E L+ + ++GLP M Sbjct: 33 GVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVVGLPRQM 92 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG V R +V + +R VP F DERLTTV+A + + + V + R VD Sbjct: 93 SGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQE 152 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 153 AAVQILQHDLD 163 >gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC 27405] gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM 2360] gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20] gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC 27405] gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM 2360] gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20] gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM 1313] Length = 141 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 + ID G RIG+AISDP A + + + L+ +S + E + I+G P Sbjct: 3 VLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGFPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+ G R T F+ + R + + WDERLTTV+A + + +M + + K+ VD Sbjct: 63 NMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLVVD 122 Query: 138 SIAAALILQEVLD 150 IAA ILQ LD Sbjct: 123 QIAAVYILQGYLD 135 >gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1] gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease [Rhodopirellula baltica SH 1] Length = 173 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 13/144 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +AS+D GT RIG+AI DP A P P +K Q ++L +E IAA+++GL Sbjct: 18 LASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAK---SERIAAWVVGL 74 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P++ +G E + +R F + +P +DER TTV+A + +RKK Q+ Sbjct: 75 PIHCDGGESDKSKESRKFA-AWLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTKQR 133 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 VD++AA ++L+ SFLE+ + Sbjct: 134 VDAVAAQVLLE------SFLEACR 151 >gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC 7421] gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421] Length = 156 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G+KRIG+A DP A +VR + + +I A +IGLP N Sbjct: 6 VLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPRN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNGS GP+ H + F + R + VP + DERL+TV A + L ++ +R+K + +D Sbjct: 66 MNGSLGPQAHRIQHFGQQLA-RVIDVPIDYVDERLSTVQAGRALQSVSATRRKAL--IDQ 122 Query: 139 IAAALILQEVLD 150 AAA+ILQ+ LD Sbjct: 123 QAAAIILQQWLD 134 >gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519] gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii] Length = 139 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G KRIG+A+SD A P L RK + E+ I E+I ++GLP N Sbjct: 4 ILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+ SEG + TR F ++++ + ++ DERLT+ A+Q L M +++ K + +D Sbjct: 64 MDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKKLID 123 Query: 138 SIAAALILQEVLD 150 + AA ILQ LD Sbjct: 124 TAAAVHILQGYLD 136 >gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87] gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87] Length = 142 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISD A L R Q L EL+ I + +IGL Sbjct: 6 IIGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQNELGIEELVDIIKKNQVGTVVIGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 65 PKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKV 124 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA ILQ LD I Sbjct: 125 IDKMAAVFILQGYLDSI 141 >gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1] gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1] Length = 138 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G R+G+A+SDPG R A P L +V A + + GLP Sbjct: 3 IMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLPYT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M G+EGP+ R + D +P+ F DERL++ A++ L + ++ K K+D Sbjct: 63 MAGAEGPQAARIRKVAKTISD-ACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKIDM 121 Query: 139 IAAALILQEVLD 150 IAA+L LQ LD Sbjct: 122 IAASLFLQAWLD 133 >gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 142 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G+K +G+AISD A L + ++ + +E L+ I +N+ +IG Sbjct: 4 HKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD + Sbjct: 124 VIDKMAAVFILQGYLDSL 141 >gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 142 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L R Q L +L+ I + +I Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + D + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRI 152 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSI 141 >gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402] gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 139 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G+K IG+A+SD A L + + +E L I T N+ +IGLP N Sbjct: 6 GLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP ++ F + + + WDERL+TV A++ L++ +VSRKKR Q +D Sbjct: 66 MNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVIDK 125 Query: 139 IAAALILQEVLD 150 +AA ILQ L+ Sbjct: 126 MAAVFILQGYLN 137 >gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis ATCC 25644] gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis ATCC 25644] Length = 148 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G++ +G+A+SD A + + ++ +E + + ++ F++GLP N Sbjct: 6 GLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVLGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPR +++A+ +I+ +P F DERLTTV A+++L++ + SRKKR + +D Sbjct: 66 MNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKRKKVID 124 Query: 138 SIAAALILQEVLD 150 +AA+LILQ LD Sbjct: 125 KLAASLILQNYLD 137 >gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera micronuciformis F0359] gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera micronuciformis F0359] Length = 138 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 66/132 (50%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G+K IG+A SD A L R+ + L L + + ++G P + Sbjct: 3 ILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKPSH 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG + FV + V+WDERLTTV AQ+ L++ V R+KR VD+ Sbjct: 63 MNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVVDT 122 Query: 139 IAAALILQEVLD 150 IAA ILQ LD Sbjct: 123 IAAVFILQNYLD 134 >gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4] gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4] Length = 140 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 10/137 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+A+SDP F + K+ +T E + I + +IGL Sbjct: 5 GLDVGSKTVGVAVSDP---FGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134 P NMN S GPR ++ + +I +P + DERLTTV A+++LI+ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA +ILQ L++ Sbjct: 121 VIDKVAAVMILQNYLNQ 137 >gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3] Length = 149 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL-PL 77 I ++D G GLA D + A P ++ ++ QT +E ++ E ++ P+ Sbjct: 3 IMAVDYGDAHTGLACCDRTQTLASP-IGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120 Query: 138 SIAAALILQEVLD 150 ++AAA+ILQ LD Sbjct: 121 AVAAAVILQNYLD 133 >gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702] gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702] gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum V10Sc8a] Length = 149 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL-PL 77 I ++D G GLA D + A P ++ ++ QT +E ++ E ++ P+ Sbjct: 3 IMAVDYGDAHTGLACCDRTQTLASP-IGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120 Query: 138 SIAAALILQEVLD 150 ++AAA+ILQ LD Sbjct: 121 AVAAAVILQNYLD 133 >gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] Length = 142 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 2/136 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIGLP 76 I +D+G+K +G+AISD A L + ++ + +E L+ I + +IGLP Sbjct: 6 IIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVIGLP 65 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + + Sbjct: 66 KNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKVI 125 Query: 137 DSIAAALILQEVLDRI 152 D +AA ILQ LD I Sbjct: 126 DKMAAVFILQGYLDSI 141 >gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243] gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA] gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243] gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA] Length = 138 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G R+G+A+SDPG R A P L +V A + + GLP Sbjct: 3 IMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLPYT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M G+EGP+ R + D +P+ F DERL++ A++ L + ++ K K+D Sbjct: 63 MAGAEGPQAARIRKAAKTISD-ACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKIDM 121 Query: 139 IAAALILQEVLD 150 IAA+L LQ LD Sbjct: 122 IAASLFLQAWLD 133 >gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33 E1] gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33 E1] Length = 141 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 4/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPL 77 I ++DLGT RIG+A++DP FA L EL++ T+ + ++GLP Sbjct: 4 IIALDLGTVRIGVAVTDPLGTFAQGVECWDAASGWMGKLGELMAQYGTDRL---LLGLPR 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G+EG R + R V FWDER T+ AQ +I+ ++SR+KR KVD Sbjct: 61 KEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGKVD 120 Query: 138 SIAAALILQEVLD 150 IAA+LILQ +D Sbjct: 121 QIAASLILQNFID 133 >gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC 35311] gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC 35311] Length = 140 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+A+SD G + ++ Q + L + E I F+IGLP N Sbjct: 2 GLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN S GPR ++ AF + +P V+ DERLTTV A+++LI+ + SR KR + +D Sbjct: 62 MNNSIGPRAEASLAFGEKL-QELFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVID 120 Query: 138 SIAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 KLAAVMILQNYLD 133 >gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753] gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753] Length = 139 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGL 75 I IDLG R G+A+ D A P + R+++ + ++L + E IA +GL Sbjct: 3 ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIA---LGL 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+GSEG + R F ++ K +P F DER TTV+A L +V KKR Sbjct: 60 PKNMDGSEGESAQNAREF-GALLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAV 118 Query: 136 VDSIAAALILQEVLD 150 VDS+AA +ILQ LD Sbjct: 119 VDSVAAVIILQNYLD 133 >gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str. Hartford] gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str. Hartford] Length = 154 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 5/139 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFII 73 N P+ +ID G+K++G+A+S+ R A P + + KK+ T+L LS + + +I Sbjct: 16 NSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LSIVEKYKVCGVVI 73 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G+P++M+G+ + + F + + +P DERLTT +A L + RK R Sbjct: 74 GMPIDMSGAVTEQTNMVMKFAEEFT-KSINLPIYLQDERLTTKAANNFLKSFGMKRKDRD 132 Query: 134 QKVDSIAAALILQEVLDRI 152 D++AA++IL+ VLD + Sbjct: 133 NNDDAVAASMILETVLDSM 151 >gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU121] Length = 142 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74 I +D+G+K +G+AISD A L + + + + +L+ I + +IG Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD IS Sbjct: 124 VIDKMAAVFILQGYLDSIS 142 >gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC 334] gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23] gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang] gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334] gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23] gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang] gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W] gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II] Length = 144 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76 + +D+G++ +G+A+SDP A + + + Q + L + + AF++GLP Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135 NMN S GPR ++A+ ++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 63 KNMNNSIGPRAEKSQAY-GELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAQMILQNYLD 136 >gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis str. McKiel] gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis str. McKiel] Length = 154 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 1/147 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +++ + L PN + +ID G+K++G+A+S+ R A P + T +LS I Sbjct: 6 LQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVLSIIAK 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I +IGLP++M+G + + F + + +P DERLTT +A L Sbjct: 66 YKICGVVIGLPIDMSGVVTQQTNIVMKFAEELA-KYTNLPIYLQDERLTTKAANNFLKSF 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152 V RK R D++AA++IL+ VLD I Sbjct: 125 GVKRKDRNNNDDAVAASMILETVLDSI 151 >gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. Fw109-5] gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5] Length = 137 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +DLG RIGLA++D R A P +VR + + L ++ E + ++GLPLNM Sbjct: 5 GLDLGRARIGLALADDVLRTARPLS-VVRHRTREADLASIAATLREWEVGTAVVGLPLNM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GSEG RAF + R VP +DERL+T A+ L + S ++ +VD+ Sbjct: 64 DGSEGASARYARAFAEELA-RATGVPVELFDERLSTFEAESRLREQGFSARELRGRVDAE 122 Query: 140 AAALILQEVLD 150 AAA+ILQ LD Sbjct: 123 AAAVILQGWLD 133 >gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase Length = 143 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+GTK +G+++SD A P + + + E L + E ++GLP Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG EG R ++R + + + + + + DERLTT A+++LID V RK+R + + Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DKLAAVLILQNYLD 137 >gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici DSM 20284] gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici DSM 20284] Length = 146 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 + +D+G++ +G+A+SD A + + + + + + ++ +A F+IGLP Sbjct: 3 LMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN +EGPRV + R + ++ +P F DERLTTV A+++LI+ + SR KR + Sbjct: 63 KNMNNTEGPRVEAARNY-GKLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA+LIL+ L+ Sbjct: 122 IDKLAASLILENYLN 136 >gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp. hominis C80] gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp. hominis C80] Length = 142 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G++ +G+AISD A L + ++ + ++ L+S I N+ + +IG Sbjct: 4 HKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD I Sbjct: 124 VIDKMAAVFILQGYLDSI 141 >gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC 49176] gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC 49176] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +DLG+K G+A++D A + RK K+ QT + + ++G Sbjct: 3 IMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVLGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+GS R + F + R + + WDERLTTVSA +I+I+ + R++R + Sbjct: 63 PKNMDGSVSKRCELSEEFAKKLTGR-TGIEVILWDERLTTVSAHEIMIEAGLKREEREKI 121 Query: 136 VDSIAAALILQEVLD 150 VD +AA IL++ ++ Sbjct: 122 VDKVAAVFILEDYMN 136 >gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583] gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA] gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583] gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA] Length = 144 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I +D G+K IG+AISDP A + R+ K+ ++ + ++ ++G Sbjct: 3 IMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVLGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + G R + ++R++ +P V WDERLTTV A + L++ V R+ R + Sbjct: 63 PKNMNNTIGERAEKSLQL-KEALERRLGLPVVMWDERLTTVEANRTLMETGVRRENRGKY 121 Query: 136 VDSIAAALILQEVLD 150 VD IAA ILQ LD Sbjct: 122 VDMIAAVFILQGYLD 136 >gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM 20093] gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM 20093] Length = 156 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG RIG A+SDP FAHP + VR E+L+ I E + ++GLPL + Sbjct: 5 GLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPLQL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY-----------VPFV-FWDERLTTVSAQQILIDMNV 127 +G+EG R +V +I R V +P V DERLTTV A + L D V Sbjct: 65 DGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDAQV 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + VD +A ILQ LD+ Sbjct: 125 QGRNHRAMVDQQSAVEILQSALDQ 148 >gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM 15897] gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM 15897] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + I +DLG++ G+AISD AH + A + + + NI ++G Sbjct: 2 EKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MNG G R + F + ++ + V + DERLTTV A LI +VSRKKR Q Sbjct: 62 LPKHMNGDLGERAQISIDFKERL-EKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRKQ 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD +AA ILQ LD+I Sbjct: 121 VVDKMAAVEILQGYLDKI 138 >gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 142 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74 I +D+G++ +G+AISD A L + ++ + ++ L+S I N+ + +IG Sbjct: 4 HKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD I Sbjct: 124 VIDKMAAVFILQGYLDSI 141 >gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147] gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147] Length = 143 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+GTK +G+++SD A P + + + E L + E ++GLP Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG EG R ++R + + + + + + DERLTT A+++LID V RK R + + Sbjct: 65 KHMNGDEGVRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DKLAAVLILQNYLD 137 >gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991] gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991] Length = 137 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76 + +DLG++ +G+++SD A P + ++ +A ++ ++I I ++GLP Sbjct: 3 VLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG G R + F + + V V WDERLTTV+AQ+ILI +VSRKKR + + Sbjct: 63 KHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKKVI 120 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 121 DQMAAVQILQGYLD 134 >gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1] gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1] Length = 145 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 13/141 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G KRIG+A+SDP A P F++ +KV + +L I I+ +IGLPL Sbjct: 4 ILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVFEKINDL---IKNYKISKIVIGLPL 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRI 133 + G EG + T+ FV N+ K ++P +F DER T+ A++ L + +K + Sbjct: 61 TLKGEEGEQARYTKEFVENL---KNHIPQDIEIIFVDERFTSSLAEKTL--LQTKKKNKK 115 Query: 134 QKVDSIAAALILQEVLDRISF 154 +K+DS++A ILQ LDR+SF Sbjct: 116 EKIDSLSAVFILQTYLDRLSF 136 >gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 140 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLP 76 I +DLG++ +G+++SD A P + +AL ++ +I + ++GLP Sbjct: 3 ILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG G R + F + + V + WDERLTTV+A++ILI +VSRKKR + + Sbjct: 63 KHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKKVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA ILQ LDR Sbjct: 121 DQMAAVQILQGYLDR 135 >gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp. cremoris MG1363] gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp. cremoris MG1363] gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 143 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+GTK +G+++SD A P + + + + L+ + E ++GLP Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG EG R ++R + + + K + + DERLTT A+++LID V RK R + + Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-KFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DKLAAVLILQNYLD 137 >gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM 15176] gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM 15176] Length = 156 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D G R GLA D P P + K + + A + + GLP NM Sbjct: 5 AVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGLPKNM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+EG R +R F + + P V WDER TTVSA IL D + +KR ++DS+ Sbjct: 65 DGTEGSRAAKSRRFAQRLAN-TAGRPVVLWDERRTTVSATAILADNDTFGQKRKARLDSV 123 Query: 140 AAALILQEVLD 150 +AA+IL+ L+ Sbjct: 124 SAAVILESFLN 134 >gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] Length = 142 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L R Q L +L+ I + +I Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQEDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRI 152 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSI 141 >gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. longum JDM301] gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. longum JDM301] Length = 156 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M Sbjct: 9 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 68 Query: 80 NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127 +G+EG R + N+ R + +P V DERLTTVSA + L + + Sbjct: 69 DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 128 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + K VD +A +ILQ LDR Sbjct: 129 ASNKHRPVVDQQSAVVILQTALDR 152 >gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56] Length = 143 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+GTK +G+++SD A P + + + E L + E ++GLP Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG EG R ++R + + + + + + DERLTT A+++LID V RK R + + Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DKLAAVLILQNYLD 137 >gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 151 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M Sbjct: 5 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127 +G+EG R + N+ R + +P V DERLTTVSA + L + + Sbjct: 65 DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + K VD +A +ILQ LDR Sbjct: 125 ASNKHRPVVDQQSAVVILQTALDR 148 >gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum DJO10A] gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp. longum BBMN68] gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp. 12_1_47BFAA] gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum DJO10A] gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum subsp. longum BBMN68] gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp. 12_1_47BFAA] Length = 152 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M Sbjct: 5 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127 +G+EG R + N+ R + +P V DERLTTVSA + L + + Sbjct: 65 DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + K VD +A +ILQ LDR Sbjct: 125 ASNKHRPVVDQQSAVVILQTALDR 148 >gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 140 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G++ +G+A+SDP A + + + + L + E + F++GLP N Sbjct: 2 GLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN + GPR ++ A+ I+ + +P + DERLTTV A+++L++ N SR KR + +D Sbjct: 62 MNNTIGPRAEASLAY-GKAIEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVID 120 Query: 138 SIAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 KLAAVMILQNYLD 133 >gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228] gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A] gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135] gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus epidermidis RP62A] gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135] gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU045] gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU028] Length = 142 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L R Q L +L+ I + +I Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRI 152 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSI 141 >gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO] gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO] gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636] gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a04] gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133C] gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0082] gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133A] gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133B] gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a01] gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO] gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636] gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a01] gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133B] gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133A] gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133C] gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a04] gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0082] Length = 143 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+AISDP F + ++ + E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAISDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR Sbjct: 60 GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA +ILQ LD Sbjct: 119 KKVIDKLAAVMILQNYLD 136 >gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3] gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3] Length = 202 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+G+ R+G+A SDPG A P L R + ++ L I E A ++GLP M Sbjct: 28 GVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVVVGLPRQM 87 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG V R + + +R VP F DERLTTV+A + + + V + R VD Sbjct: 88 SGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQE 147 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 148 AAVQILQHDLD 158 >gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB] gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB] Length = 150 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D G KRIG+A+ D A ++RK + S + T ++ +IG PL Sbjct: 3 ILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G+EG + F + + + +P + WDE LTT A++IL V +KR VD Sbjct: 63 LDGTEGIQCEKVVRFARRL-EAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVDR 121 Query: 139 IAAALILQEVLDRIS 153 +AA+LILQ LD IS Sbjct: 122 LAASLILQSYLDAIS 136 >gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM 20213] gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM 20213] Length = 150 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 11/142 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP FAHP + V E+L+ + E++ I+GLPL M Sbjct: 5 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDR---------KVYVP-FVFWDERLTTVSAQQILIDMNVSR 129 +G+EG R + N+ R + +P V DERLTTVSA + L + + Sbjct: 65 DGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKAS 124 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 K VD +A +ILQ LDR Sbjct: 125 TKHRPMVDQQSAVVILQTALDR 146 >gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1] gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1] Length = 140 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G K IG A+SD A + R + I+GLP N Sbjct: 3 ILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ GP+ +AF + + + WDERL+TV+A++ LI +V R KR Q +D Sbjct: 63 MNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVIDK 122 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 123 MAAVFILQGYLDSLS 137 >gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Desmospora sp. 8437] Length = 141 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 8/142 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLG KR+G+A+SDP A L R+ L I + A ++GLP N Sbjct: 4 IMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGLPRN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS G + + R + +R +P WDERL+TV+ ++ LID ++SR+KR + VD Sbjct: 63 MDGSIGAKGEACRQLGRELEER-FQIPVELWDERLSTVAVERTLIDADLSRRKRRKVVDR 121 Query: 139 IAAALILQEVLDRISFLESSKG 160 +AA+ ILQ +LE+ +G Sbjct: 122 MAASWILQ------GYLEARRG 137 >gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis 315-B] gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis 315-B] gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 147 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 7/142 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G K IG+AISD A P + R + ++ I ++ ++GLP N Sbjct: 4 VLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP + F + + K + V+ DER+TT+ A+ +L++ +V R+ R + VD Sbjct: 64 MNNTLGPTCQMVQKFSEKLKN-KFRLELVYVDERMTTLMAKDVLMEASVRRENRKKYVDK 122 Query: 139 IAAALILQEVLDRISFLESSKG 160 IAAA IL+ ++++SS G Sbjct: 123 IAAAFILK------TYMDSSDG 138 >gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109] gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109] Length = 144 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +DLG+KRIG+A+SD A + R + +L + + +IGLP + Sbjct: 3 ILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPRH 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G G A+ + + +++P WDERLTT+ A+++L+ ++SR+KR Q +D Sbjct: 63 LDGRLGEGAEEALAWAAELRE-HLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVIDK 121 Query: 139 IAAALILQEVLD 150 +AA LILQ LD Sbjct: 122 LAAGLILQAFLD 133 >gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980] gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980] Length = 143 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+A+SDP F + ++ + E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR Sbjct: 60 GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA +ILQ LD Sbjct: 119 KKVIDKLAAVMILQNYLD 136 >gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365] gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365] Length = 139 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G K IG+A SD AHP + R+ + + ++ ++GLPL ++ Sbjct: 6 GLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGLPLELS 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G EG R R + + + +P WDER +T + +++LI+ ++SR+KR Q + Sbjct: 66 GQEGRRARRVRVLIDAL---RAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQVI 122 Query: 137 DSIAAALILQEVLD 150 D AAA ILQ LD Sbjct: 123 DKQAAAYILQGWLD 136 >gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7] gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7] Length = 140 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 10/137 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+A+SDP F + K+ + E + I + +IGL Sbjct: 5 GLDVGSKTVGVAVSDP---FGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134 P NMN S GPR ++ + ++ +P + DERLTTV A+++LI+ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LVKETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA +ILQ L++ Sbjct: 121 VIDKVAAVMILQNYLNQ 137 >gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 1/2a F6854] gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 1/2a F6854] Length = 117 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G+K +G+AISDP G + + Q + + + E + ++GLP Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117 >gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 157 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 IDLG R+GLA+SDPG AHP + + AL E++ I E++ ++GLPL + Sbjct: 5 GIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPLLL 64 Query: 80 NGSEGPRVHSTRAFVHNM-------IDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127 +G EG R + N+ +D + Y VP + DERLTTV+A L D V Sbjct: 65 SGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDAQV 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 +K VD +A +ILQ +DR Sbjct: 125 GGRKHRPMVDQQSAVVILQTAIDR 148 >gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii ATCC BAA-1640] Length = 141 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G K IG++ISD A + R + E+ + NI ++G+P+NM+ Sbjct: 6 GLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPINMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS+ R F + K V +F DER T++ A++ LI NV R+ R + +D +A Sbjct: 66 GSDTVMSKRIRKFARKLTP-KFGVEVIFQDERFTSIEAERTLIQSNVRRENRKKYIDQLA 124 Query: 141 AALILQEVLDRIS 153 A++ILQ +DR++ Sbjct: 125 ASIILQTYIDRMN 137 >gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 3_1_53] gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 3_1_53] Length = 137 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +DLG+K +G+++SD A P A E + +I + ++GLP Sbjct: 3 ILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR + + Sbjct: 63 KHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKKII 120 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 121 DQMAAVQILQSYLD 134 >gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11] gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11] Length = 143 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+GTK +G+++SD A P + + + + L+ + E ++GLP Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG EG R ++R + + + + + + DERLTT A+++LID V RK R + + Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-EFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DKLAAVLILQNYLD 137 >gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649] gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649] Length = 161 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLP 76 +D+GT R+G+A+SDP A P L R + E+++ I+GLP Sbjct: 1 MDVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +++G EGP + R + + R V DERLT+VSA + L D V+ +++ V Sbjct: 61 RSLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVV 120 Query: 137 DSIAAALILQEVLD 150 D AA LILQ LD Sbjct: 121 DQAAAVLILQAALD 134 >gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus ATCC 25745] gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745] Length = 146 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + +D+G++ +G+++SD A + + + +E + + E ++ F++GLP Sbjct: 3 LMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN +EGPRV + R + +++ +P F DERLTTV A+++LI+ + SR KR + Sbjct: 63 KNMNNTEGPRVEAARNY-GKLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA+LIL+ L+ Sbjct: 122 IDKLAASLILENYLN 136 >gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum DSM 5476] gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum DSM 5476] Length = 145 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R GLA+ D A P + + + ++ ++G P N Sbjct: 3 IMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS G R F + + + +P WDER TTVSA Q L ++NV +KR + VD Sbjct: 63 MDGSCGERAKKCEEFAKRLGEM-IPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVDE 121 Query: 139 IAAALILQEVLD 150 +AA +IL+ L+ Sbjct: 122 VAATIILESYLE 133 >gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2] gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2] Length = 137 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLP 76 I +DLG+K +G+++SD A P + ++ +I + ++GLP Sbjct: 3 ILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR + + Sbjct: 63 KHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKKII 120 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 121 DQMAAVQILQSYLD 134 >gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484] gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484] Length = 133 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 7/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ID GTK +GLA+ D + A P +P R KV + EL + ++ ++GLPL Sbjct: 3 VLCIDWGTKSLGLALGDTNLKLATPLKPIPNRGKVLERIAEL---VKEYDVRLVVVGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +G EG R R+FV + +V WDER TT A Q+L SRKK + Sbjct: 60 TPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKELK 117 Query: 137 DSIAAALILQEVLDRI 152 DS++A +ILQE LD + Sbjct: 118 DSVSALIILQEYLDSL 133 >gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL J2-003] Length = 114 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP G + + Q + + + E + ++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114 >gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes LO28] Length = 116 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISDP G + + Q + + + E + ++GLP N Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114 >gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4] gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4] Length = 157 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 14 KPNQP------IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 +P QP I +D+G +RIG+AISD A P L R + + Sbjct: 3 QPPQPVMNLARIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHE 62 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 A + GLPL+M+G P+ ++AF + R +P FWDERLT+ +A +IL Sbjct: 63 ATAIVAGLPLHMSGDLSPQAQKSQAFAQELAKR-TGLPLYFWDERLTSHAAHEILDVSGF 121 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 R +D +AA LILQ LD Sbjct: 122 GTTGRKAVIDQVAAVLILQGFLD 144 >gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304] gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304] Length = 166 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +DLG RIGLA+SDP FAHP + A++ ++ I ++ ++G PLN+ Sbjct: 9 GLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHIVLGYPLNL 68 Query: 80 NGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +G+EG R F + R + DER+TTVSA +L+ +S ++ Sbjct: 69 DGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGMSSRQHRAV 128 Query: 136 VDSIAAALILQEVLD 150 VD+ +A +ILQ LD Sbjct: 129 VDTQSAVVILQSALD 143 >gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1] gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1] Length = 143 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+A+SDP F + ++ + E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN S GPR ++ + I +P + DERLTTV A+++L++ N SR KR Sbjct: 60 GLPKNMNNSIGPRAEASMLYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA +ILQ LD Sbjct: 119 KKVIDKLAAVMILQNYLD 136 >gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411] gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411] Length = 136 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77 I ID GTK+IG+AISD A P + L+ + I +N I ++G+P+ Sbjct: 3 ILGIDYGTKKIGIAISDETNTIALPHGVI---DTDGEYLDKIKEIVKKNKITRIVVGMPI 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV- 136 + G +G R T F++ + + + V WDERL+T +++IL NV +K +KV Sbjct: 60 TLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKVI 119 Query: 137 DSIAAALILQEVLD 150 D IAA ILQ LD Sbjct: 120 DKIAATFILQGYLD 133 >gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp. D12] gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D12] gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D12] Length = 139 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SDP A P + R+K + ++ EN + ++G+P +++ Sbjct: 7 ALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIPKSLD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 GSE + R F+H + V + DER TTV+A +IL +MN RK ++K VD Sbjct: 66 GSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMN--RKGALEKRKVVD 123 Query: 138 SIAAALILQEVLD 150 +AA+LILQ+ L+ Sbjct: 124 KVAASLILQQYLN 136 >gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae HRC/581] gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae] Length = 141 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 3/133 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLP 76 I ++DLGTK G AI+DP A K + Q L++ I ++G P Sbjct: 7 ILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGKIVLGYP 66 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L MNG++ P + +++ + +P V DERL+T A ILI NVSRKKR + + Sbjct: 67 LYMNGNKAPHTLLVEK-MSSILKQNFQIPVVLQDERLSTSQAHDILILANVSRKKRKKVI 125 Query: 137 DSIAAALILQEVL 149 D +AA +IL+ L Sbjct: 126 DKLAAQIILERYL 138 >gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] Length = 140 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G R+G+A+SDP R A P L ++V A S + + G PL Sbjct: 3 VLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKPLT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G EGP+ + DR +P DERL++ A++IL +S K KVD Sbjct: 63 LSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKVDM 121 Query: 139 IAAALILQEVLDR 151 +AA+L LQ LDR Sbjct: 122 VAASLFLQAWLDR 134 >gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis ATCC 15703] gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis L2-32] gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis ATCC 15703] gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis L2-32] Length = 151 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 IDLG R+GLA+SDP AHP + + AL E++ I E++ +IGLPL + Sbjct: 5 GIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPLLL 64 Query: 80 NGSEGPRVHSTRAF-------VHNMIDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127 NG EG R + +H ++ + Y VP + DERLTTV+A L D + Sbjct: 65 NGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDARI 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 +K VD +A +ILQ LDR Sbjct: 125 GGRKHRPMVDQQSAVVILQTALDR 148 >gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252] gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252] Length = 145 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 7/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77 + ++D GT+R+GLA++DP R A P + AL++L + E I +IG PL Sbjct: 5 VVAVDYGTRRVGLALADPLRVIAQP----YGTYAPEAALQVLQRLHAEEGIETLVIGWPL 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 G+EG F+ + V V WDER T+ A++ L ++ RKKR K Sbjct: 61 TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQE L++ Sbjct: 121 IDQMAAVIILQEYLEQ 136 >gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans 2CP-C] Length = 137 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG RIGLA++D R A +VR+ + + + ++GLPLNM+ Sbjct: 5 GVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPLNMD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+EGP R F + + + VP +DERL++ A+ L VS + + +VD+ A Sbjct: 65 GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQVDAEA 123 Query: 141 AALILQEVLDR 151 AA+ILQ LDR Sbjct: 124 AAVILQGWLDR 134 >gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM 15952] gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM 15952] Length = 145 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 I +D+G++ +G+A+SDP A + + + + + + + I F++GLP Sbjct: 3 IMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN + GPR ++ ++ + ++ +P + DERLTTV A+++LI+ N SR KR + Sbjct: 63 KNMNNTIGPRAEASMSYGEKL-EQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAVMILQNFLD 136 >gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043] gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043] Length = 165 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ID+G R+G+A SDP FA+P L R +E ++ +T E ++ ++GLP + Sbjct: 10 GIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIVVGLPRLL 69 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG RA+ + R VP DERLTTV A Q L D V + + VD Sbjct: 70 SGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQRSVVDQA 129 Query: 140 AAALILQEVLDRISFLESSKG 160 AA LILQ LD E+S G Sbjct: 130 AAVLILQSALD----AEASAG 146 >gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola ACS-139-V-Col8] gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola ACS-139-V-Col8] Length = 145 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 9/140 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAF 71 + I +D+G+K +G+A+SD A + ++ + A + LL + + Sbjct: 5 ERIVGLDVGSKTVGVAMSDLLGWIAQGLETI---RIDEEAGDFGFDRLLELLDQHQVKKV 61 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130 +IGLP NMN + GPR +++ + ++D + + + DERLTT A+++L+ + NVSR Sbjct: 62 VIGLPKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRS 121 Query: 131 KRIQKVDSIAAALILQEVLD 150 KR + +D +AA +ILQ LD Sbjct: 122 KRKKVIDKLAAVIILQNYLD 141 >gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas acidaminovorans] gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas acidaminovorans] Length = 138 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G KRIG+A+SDP R F+ P L K Q EL IT + IIG+P Sbjct: 7 ILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLIIGIPYA 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++GS P+ + ++ + D + + +DER +T A + L M + ++ + D+ Sbjct: 67 IDGSITPKTEECQQILNRLKDV-LSISVEGFDERYSTWEANEELKKMGYNWRQAKEIKDA 125 Query: 139 IAAALILQEVLDR 151 ++AA+IL+E L++ Sbjct: 126 MSAAMILKEFLNQ 138 >gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Pseudoramibacter alactolyticus ATCC 23263] gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Pseudoramibacter alactolyticus ATCC 23263] Length = 143 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTE-NIAAFIIG 74 + I +D+G K +G+A+SD + + KK + A L + T+ NI + G Sbjct: 3 EKILGLDIGDKYVGIAVSDA--LGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +M+G E +V T+ + N + +++ + ++ DERLTT +++ +LI V R+ R Q Sbjct: 61 LPKDMDGRETAQVRKTKNYC-NFLAKRLGLEVIYIDERLTTRASEAVLIAGGVRRENRKQ 119 Query: 135 KVDSIAAALILQEVLDR 151 +D+++A LILQ LDR Sbjct: 120 HIDTLSAQLILQMYLDR 136 >gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6] gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6] Length = 146 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIGL 75 I +D G K +G+A+SD A + R++ T+ T + I+ ++GL Sbjct: 3 ILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQ 134 PL M+ G R F M+ ++ + + WDERLTTV+A ++L +M V R R Sbjct: 63 PLLMSDEIGDRAQKAMEF-GEMLKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNRKA 121 Query: 135 KVDSIAAALILQEVLD 150 +D IAA ILQE LD Sbjct: 122 VIDQIAAGFILQEYLD 137 >gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans 2CP-1] gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans 2CP-1] Length = 137 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG RIGLA++D R A +VR+ + + + ++GLPLNM+ Sbjct: 5 GVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLNMD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD+ A Sbjct: 65 GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEA 123 Query: 141 AALILQEVLDR 151 AA+ILQ LDR Sbjct: 124 AAVILQGWLDR 134 >gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1] gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 142 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 12/140 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ++D+GTKRIG+A SDP +P P++ + A E + + E +I +IGLPL + Sbjct: 8 ALDVGTKRIGVAYSDPLGISTNPLPYIDN---DEHAFEKIRDVVREYDIGTVVIGLPLTL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 G EG + T+ F + K Y+P F DER TT A++ L + KKR +K Sbjct: 65 KGKEGTQAKLTKEFAQKL---KGYLPEDVEIEFVDERFTTSLAEKQLKETGKRSKKR-EK 120 Query: 136 VDSIAAALILQEVLDRISFL 155 +DS++A IL+ L++ ++ Sbjct: 121 IDSLSAVYILKTYLEKKQYM 140 >gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552] gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552] Length = 139 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74 + I +DLG++ G+A+SD AH Q A ++ I I ++G Sbjct: 2 EKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 LP +MNG G R + F M+++KV + V DERLTT AQ LI +VSRKKR Sbjct: 62 LPKHMNGDLGERAQISIMF-KEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA ILQ LD Sbjct: 121 QVIDKMAAVAILQGYLD 137 >gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232] gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232] gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 143 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76 I ++DLG K G AISD + ++P F + + + ++F E I+ ++G P Sbjct: 7 ILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYP 66 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L + G PR F +++ + + VF DERLTT AQ L+D+ +S KKR + + Sbjct: 67 LTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVI 125 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 D +AA +IL+ FL + KG Sbjct: 126 DKLAAQIILER------FLNTKKG 143 >gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644] gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644] Length = 183 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 81/136 (59%), Gaps = 5/136 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTEN-IAAFIIG 74 I ++D G KR+GLAISDPGR A P L R T ++ L + E+ + ++G Sbjct: 4 ILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRLVMG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G + P+ + R + + + +++ + ++ DER +T A +++ + +S KR + Sbjct: 64 LPVHTSGRDSPQARAARQW-GDRVAKELGLTIIYVDERYSTKHADELMREAGLSAAKRKR 122 Query: 135 KVDSIAAALILQEVLD 150 +VDS+AA +IL++ LD Sbjct: 123 RVDSLAAVVILRDYLD 138 >gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii 115-3-CHN] gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii JV-V16] gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii 115-3-CHN] gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii JV-V16] Length = 148 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISD G + + ++ + I E ++ F++GLP N Sbjct: 5 GLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136 M+GS+G V+ ++ + ++ K +P + DERLTT+ A ++LI+ RKKR + + Sbjct: 65 MDGSDGASVNRSKNY-GKRLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRKEVI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus Mu50] gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus N315] gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus Mu3] gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30] gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3] gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus Mu50] gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3] gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30] gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus 04-02981] Length = 123 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 59/95 (62%) Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 +L+ I N+ +IGLP NMN S G R ++ + +++ + V WDERL+T++ Sbjct: 28 QLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMA 87 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 A++ L++ +VSR+KR Q +D +AA ILQ LD + Sbjct: 88 AERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSL 122 >gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis AD011] gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis subsp. lactis AD011] gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis V9] Length = 163 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP----RPFLVRKKVTQTALELLSFITTEN--IAAFIIG 74 +DLG R+G+A S+P R FA+P R + +V L+L+ E + A IG Sbjct: 7 GLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTAIAIG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHN--------MIDRKVYV----PFVFWDERLTTVSAQQIL 122 LPL M+GS G + + + M D+ ++ +F DERLTTV A + L Sbjct: 67 LPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDAHRRL 126 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDR 151 D NVS K+ VD +A ILQ LDR Sbjct: 127 FDANVSSKQHRAVVDQQSAVEILQTALDR 155 >gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC 14672] gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 154 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DPG A P + + V L I ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVGLPRSLK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + + VP DER+TTV+A Q L V KK +D A Sbjct: 68 GGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 128 AVIILQQALESERVSGEPPGEG 149 >gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp. 1501(2011)] Length = 179 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%) Query: 10 VKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTEN 67 K+ P Q + +D G K++G+A+ + + A P LV + LL I T Sbjct: 20 TKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWK 79 Query: 68 IAAFIIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 I ++GLPLNM+GS R H R H +++++++VP +DERLT+V A+++ Sbjct: 80 IGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAW 139 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149 ++ + + +R +D I+A L+LQ L Sbjct: 140 ELGLIKNER-DPIDDISACLLLQSYL 164 >gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149] gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149] Length = 153 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74 +D+G R+G+A SDP A P L R V EL++ I ++G Sbjct: 11 GVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+N+ G GP + +A+ + D VP DER++TV A + L + V K+R Sbjct: 71 LPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRRA 130 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 131 VVDQAAAVEILQSWLD 146 >gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185] gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185] Length = 170 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+GT R+G+A+SDP A P L R + ++ ++ + + A ++GLPLNM Sbjct: 8 GVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLNM 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + + RA+ + + + + + DERLT+VSA Q L V+ ++ Q VD Sbjct: 68 KGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQQ 127 Query: 140 AAALILQEVLD 150 AA LILQ L+ Sbjct: 128 AAVLILQAALE 138 >gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens F0305] gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Parascardovia denticolens DSM 10105] gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens F0305] gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Parascardovia denticolens DSM 10105] Length = 176 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R+G+AISDP FAHP + V Q E+ I ++ +IG PL + Sbjct: 35 GLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHVVIGYPLQL 94 Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +G+EG R F + R +Y V DER+TTV A L+D + ++ Sbjct: 95 DGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAGIGSRRHRP 154 Query: 135 KVDSIAAALILQEVLD 150 VD +A LILQ LD Sbjct: 155 LVDQQSAVLILQAALD 170 >gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K] gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K] Length = 137 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG RIGLA++D R A +VR+ + + + ++GLPLNM+ Sbjct: 5 GVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPLNMD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD+ A Sbjct: 65 GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEA 123 Query: 141 AALILQEVLDR 151 AA+ILQ LDR Sbjct: 124 AAVILQGWLDR 134 >gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402] gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402] gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 139 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 4/137 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKK-VTQTALELLSFITTENIAAFIIG 74 + I +DLG++ G+AISD AH + R + A +++ I I ++G Sbjct: 2 ERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 LP +MNG G R + F M++++V + V DERLTT AQ LI +VSRKKR Sbjct: 62 LPKHMNGDLGERAQISIMF-KEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA ILQ LD Sbjct: 121 QVIDKMAAVAILQGYLD 137 >gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 142 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74 I +D+G+K +G+A+SD A L + ++ + + +L I E+ +IG Sbjct: 4 HKIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + ++ + V WDERL+T++A++ L++ +VSR KR + Sbjct: 64 LPKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKK 123 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA ILQ LD + Sbjct: 124 VIDKMAAVFILQGYLDSL 141 >gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17] gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17] Length = 156 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP FAHP + + AL+ +++ I E + ++GLPL + Sbjct: 9 GVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQL 68 Query: 80 NGSEGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNV 127 +G+EG R + + N++D ++P V DERLTTVSA + L++ + Sbjct: 69 DGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQL 128 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 ++ VD +A +ILQ LD Sbjct: 129 GSRRHRPVVDQQSAVVILQTALD 151 >gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705] gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F] gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705] gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 145 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 +G R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M+G+ Sbjct: 1 MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT 60 Query: 83 EGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNVSRK 130 EG R + N+ R + +P V DERLTTVSA + L + + + Sbjct: 61 EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN 120 Query: 131 KRIQKVDSIAAALILQEVLDR 151 K VD +A +ILQ LDR Sbjct: 121 KHRPVVDQQSAVVILQTALDR 141 >gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 144 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 +G R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M+G+ Sbjct: 1 MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT 60 Query: 83 EGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNVSRK 130 EG R + N+ R + +P V DERLTTVSA + L + + + Sbjct: 61 EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN 120 Query: 131 KRIQKVDSIAAALILQEVLDR 151 K VD +A +ILQ LDR Sbjct: 121 KHRPVVDQQSAVVILQTALDR 141 >gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum PRL2010] gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum PRL2010] gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 152 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP FAHP + + AL+ +++ I E + ++GLPL + Sbjct: 5 GVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQL 64 Query: 80 NGSEGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNV 127 +G+EG R + + N++D ++P V DERLTTVSA + L++ + Sbjct: 65 DGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQL 124 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 ++ VD +A +ILQ LD Sbjct: 125 GSRRHRPVVDQQSAVVILQTALD 147 >gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia heliotrinireducens DSM 20476] gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia heliotrinireducens DSM 20476] Length = 138 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA+SD R A P L V E + I + GLP Sbjct: 3 VLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLPYT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M G EGP+ S + + + +P F DERL++ A++IL + + + KVD Sbjct: 63 MAGEEGPQAASIKEKARQIASAR-DLPLSFVDERLSSAEAKRILREEGLDERSMRGKVDM 121 Query: 139 IAAALILQEVLD 150 IAA+L LQ LD Sbjct: 122 IAASLFLQAWLD 133 >gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM 12042] gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM 12042] Length = 139 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 17/142 (11%) Query: 19 IASIDLGTKRIGLAISDP----GR-----RFAHPRPFLVRKKVTQTALELLSFITTENIA 69 I +DLG++ +G+A+SDP R RFA + Q A EL Sbjct: 4 IMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKEL-------GAV 56 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 F++GLP +MNG G R + F + + +P + DERLTT +A++ILI +VSR Sbjct: 57 KFVLGLPKHMNGDVGIRGQISLDFKAKL-EAACGLPVILQDERLTTAAAERILISADVSR 115 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 KKR +D +AA ILQ LD+ Sbjct: 116 KKRKAVIDQMAAVQILQSYLDQ 137 >gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989] gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989] Length = 141 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 8/137 (5%) Query: 19 IASIDLGTKRIGLAISDP----GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 I +DLG+K G++I D R R E+L + + ++G Sbjct: 4 IIGLDLGSKTCGVSICDALHITCRALTTVR--FESDDYDACLEEVLKLLQENKVKEVVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MNG G R + F + + V WDERLTTV+A++IL+ +VSRKKR + Sbjct: 62 LPKHMNGDIGIRGEISCEFAKKLESSGIKVHL--WDERLTTVAAEKILLQGDVSRKKRKK 119 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA ILQ LDR Sbjct: 120 VIDQMAAVQILQSFLDR 136 >gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei subsp. sakei 23K] gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei 23K] Length = 147 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76 + D+G++ +G+A+SD A + + + ++ L+ + + + F++GLP Sbjct: 3 LMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN S GPR + + + + +P + DERLTTV A+++L++ + SRKKR Q Sbjct: 63 KNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRKQV 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 123 IDKLAAVMILQNYLD 137 >gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1] Length = 143 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D G R G+A+ A P + K + + + + ++G P N Sbjct: 3 IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R F + + +P WDER TTVSA L N KKR VD+ Sbjct: 63 MNGTIGERCEKCTLFAEKL-EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121 Query: 139 IAAALILQEVLD 150 +AA +IL+ L+ Sbjct: 122 VAAVIILESYLE 133 >gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27] gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8] gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27] gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 135 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL Sbjct: 3 VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + E + V + R V V WDER TT AQ+ L ++ K+D Sbjct: 63 TDLKESAQAGKVLPLVEALRARGVEVE--LWDERFTTKLAQERLKHAPKRLRRDKGKLDE 120 Query: 139 IAAALILQEVLDR 151 +AA ++L++ L R Sbjct: 121 LAAVVLLEDYLAR 133 >gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1] gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1] Length = 138 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G + IG+A SD A + R + + ++ ++G P N Sbjct: 3 ILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GPR + F + + ++ +P WDERLTT+ A++ L+ ++SR KR + +D Sbjct: 63 MNNTVGPRAKLSEEFA-DKLSAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVIDK 121 Query: 139 IAAALILQEVL 149 +AA LILQ L Sbjct: 122 MAAVLILQNYL 132 >gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM 15436] gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM 15436] Length = 155 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D G RIG+A++DP + + P L ELL+ I + +IG+P+++N Sbjct: 9 GVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHLN 68 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R F + + + DERLTT A L +M V + R K+D +A Sbjct: 69 GKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQLA 128 Query: 141 AALILQEVLD 150 A++IL+ ++ Sbjct: 129 ASIILENAIE 138 >gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium varium ATCC 27725] gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium varium ATCC 27725] Length = 139 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G RIG+A SD A P + RKK T+ + T EN A ++G+P +++ Sbjct: 7 SLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIPKSLD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 G+E + R F+ + + + DERLTTVSA ++L + N +K ++K VD Sbjct: 66 GTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESN--KKGALEKRKVVD 123 Query: 138 SIAAALILQEVLD 150 IAAA+ILQ LD Sbjct: 124 KIAAAIILQTFLD 136 >gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614] gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614] Length = 156 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTEN--IAAFIIGLPL 77 ID G RIG+A SDP A P + R K + +L+ E + ++GLP Sbjct: 8 GIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLPR 67 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +++G EGP R F + R VP DER+TTVSA+ +L D + KR VD Sbjct: 68 SLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVVD 127 Query: 138 SIAAALILQEVLD 150 AA LILQ LD Sbjct: 128 QAAAVLILQHALD 140 >gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2] gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2] Length = 140 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G RIG+A+SDP G + + + ++ + I+G P Sbjct: 3 IIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGFPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR T F+ + R + + WDERL+TVSA + + ++ V + K+ VD Sbjct: 63 NMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHVVD 122 Query: 138 SIAAALILQEVLD 150 IAA ILQ LD Sbjct: 123 QIAAVYILQGYLD 135 >gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9] gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9] Length = 143 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G RIG+A++DP A P L RK + A LL I + ++G PL+ Sbjct: 6 IMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNPLH 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVD 137 ++G P F + +R +P WDERL++V+A +IL + +R K R +D Sbjct: 66 LSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFIID 124 Query: 138 SIAAALILQ 146 +AA LIL+ Sbjct: 125 QVAAVLILE 133 >gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM 20098] gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM 20098] Length = 154 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 IDLG R+GLA+SDP FAHP V + +++ I EN+ ++GLPL + Sbjct: 5 GIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGLPLLL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVY----------VPFV-FWDERLTTVSAQQILIDMNV 127 +G EG R + N+ R +Y VP + DERLTTVSA + L N+ Sbjct: 65 SGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLRQANI 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + + VD +A +ILQ LD+ Sbjct: 125 AERGHRPVVDQQSAVVILQAALDK 148 >gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_5R] gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] Length = 139 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SD A P + R+K+ + ++ EN + ++G+P +++ Sbjct: 7 ALDVGDVRIGVAKSDIMGIIASPLETIDRRKM-KPVKRIIELCEQENTKSIVVGIPKSLD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 GSE + R F+H + V DER TTV+A QIL +MN RK ++K VD Sbjct: 66 GSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMN--RKGALEKRKVVD 123 Query: 138 SIAAALILQEVLD 150 +AA+LILQ+ L+ Sbjct: 124 KVAASLILQQYLN 136 >gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila UWE25] gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 134 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 8/130 (6%) Query: 28 RIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------ENIAAFIIGLPLNMN 80 RIGLA SD + A P + KK QT ++LL I+ I +IGLPL M+ Sbjct: 3 RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + F ++ + +P WDERLTTV A++ L + ++RKKR + VD ++ Sbjct: 63 GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121 Query: 141 AALILQEVLD 150 A++ILQ LD Sbjct: 122 ASIILQSYLD 131 >gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126] gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126] Length = 137 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 8/137 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID GTKR+GLA++DP + A P + K + Q L ++ ++E + A + G P N Sbjct: 4 VLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQY---LANYFSSEEVEAVVCGYPTN 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 G AF+ N+ +K +P DE ++ A Q +I +RK+R +K Sbjct: 61 EEGEATDATRHVDAFI-NLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKKSG 119 Query: 136 -VDSIAAALILQEVLDR 151 +D I+AA+ILQ+ L+ Sbjct: 120 NIDKISAAIILQQFLEE 136 >gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC 27678] gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1] gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC 27678] gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1] Length = 158 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP AHP + + AL E++ I E++ ++GLPL + Sbjct: 5 GVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLLL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNV 127 NG G R + N+ R V DERLTTV+A Q L D + Sbjct: 65 NGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQI 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 ++ VD +A +ILQ LDR Sbjct: 125 GGRRHRPMVDQQSAVVILQTALDR 148 >gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1346] Length = 140 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I +D+G++ +G+A+SD A + + + L + + F++GLP Sbjct: 3 IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN S GPR ++ A+ + I +P + DERLTTV A++ L++ N SR KR + Sbjct: 63 KNMNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAVMILQNYLD 136 >gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii SJ-7A-US] gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153] gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153] gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii SJ-7A-US] gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] Length = 148 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 9/136 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIAAFIIGLP 76 +D+G+K +G+AISD A + R A++ L + ++ F++GLP Sbjct: 5 GLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKL--VREYDVTGFVLGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQ 134 NM+GS+G V ++ + + D K +P + DERLTT+ A ++LI+ RKKR + Sbjct: 63 KNMDGSDGVSVSRSKNYGKRLED-KFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRKE 121 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 122 VIDQMAAVLILQNYLD 137 >gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu 4113] gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu 4113] Length = 154 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 63/130 (48%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + + L + + ++GLP +++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVVVGLPRSLS 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + R VP DER+TTV+A Q L V+ KK VD A Sbjct: 68 GREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKGRSVVDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 128 AVVILQSALE 137 >gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC 27679] gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium JCVIHMP022] gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC 27679] gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium JCVIHMP022] Length = 158 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 +DLG R+GLA+SDP AHP + + AL E++ I E++ ++GLPL + Sbjct: 5 GVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLLL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNV 127 NG G R + N+ R V DERLTTV+A Q L D + Sbjct: 65 NGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQI 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 ++ VD +A +ILQ LDR Sbjct: 125 GGRRHRPMVDQQSAVVILQTALDR 148 >gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6] gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6] Length = 142 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G KR G+A+SD G A PR ++ + ELL+ I E A +IGLP+N++ Sbjct: 5 AIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLPINLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E R F ++ R+ +P + +E L++ A++ L D S + +D A Sbjct: 65 GEESLTTRQVRNFSKSLA-RRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVLDQQA 123 Query: 141 AALILQEVLDR 151 A ILQ LD+ Sbjct: 124 AVRILQSFLDQ 134 >gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] Length = 156 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I + + + + I +D G K+IG+A+SD A P VRK + L + Sbjct: 6 INEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLYGILIE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + + +IGLPL++ G F + MI +K + DER +T A ++ Sbjct: 66 NDAGSMVIGLPLDLFGMGNELCDKVMLFANRMI-KKYAINIYLHDERYSTAMATRVAKLA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 N+ RK+ + D IAA LILQ+VLD + + Sbjct: 125 NIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155 >gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708] gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708] Length = 158 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 15 PNQPIAS------IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 P Q + S +D+G+KRIGLA D A + RK + ++ + + Sbjct: 3 PQQKLKSFISALGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQIVNARRV 62 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP M+GS G + + F H + + + +P + DERLT+ A+Q+LI N S Sbjct: 63 QVLVVGLPYAMDGSLGFQARHVQKFTHRLA-QALKLPVEYVDERLTSYQAEQLLIAENRS 121 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 + +D AAALILQ+ LD Sbjct: 122 PSRHKGLIDRKAAALILQQWLD 143 >gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4] gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4] Length = 146 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G K IG+A+SDP A L R + + +L + +IGLP Sbjct: 3 ILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLPRT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G GP+ F + + + + ++WDER TT A+++L+ +VSRKKR + D Sbjct: 63 LAGEIGPQAQKVLRFGELLAQQGLKI--IYWDERFTTKEAEKVLLAADVSRKKRRRVKDI 120 Query: 139 IAAALILQEVLDR 151 +AA L+L+ L++ Sbjct: 121 LAAVLLLEAYLEK 133 >gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM 13965] gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM 13965] Length = 330 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG++ IG+AISDP A P L R+ + ++ ++G P ++ Sbjct: 5 GLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPRRLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G GP + AF + V WDERL+TV A+++LID ++SR++R +D +A Sbjct: 65 GRRGPEAEAAEAFAAGLQAAGVSR-VTLWDERLSTVQAERVLIDADLSRRRRKAIIDRMA 123 Query: 141 AALILQEVLDRISFLESSK 159 A +ILQ +FLE+ + Sbjct: 124 ATVILQ------AFLEAQR 136 >gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 145 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 13/140 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G KRIG+A+SDP A P F++ +KV + +L I I+ +IGLPL Sbjct: 4 ILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVFEKINDL---IKNYKISKIVIGLPL 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRI 133 + G EG + T+ F N+ K ++P +F DER T+ A++ L +K + Sbjct: 61 TLKGEEGEQARYTKDFAENL---KNHIPQDIEIIFIDERFTSSLAEKTL--SQTKKKNKK 115 Query: 134 QKVDSIAAALILQEVLDRIS 153 +K+DS++A ILQ LDR+S Sbjct: 116 EKIDSLSAVFILQTYLDRLS 135 >gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1] gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1] Length = 177 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 7/142 (4%) Query: 14 KPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAF 71 +P Q + +D G K++G+A+ + + A P L + LL I T I Sbjct: 22 RPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRIGRV 81 Query: 72 IIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++GLPLNM+GS R H R H +++++++VP +DERLT+V A+++ ++ + Sbjct: 82 VVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWELGL 141 Query: 128 SRKKRIQKVDSIAAALILQEVL 149 + +R +D I+A L+LQ L Sbjct: 142 IKNER-DPIDDISACLLLQSYL 162 >gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612] gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612] Length = 178 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 80/138 (57%), Gaps = 9/138 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE----NIAAFI 72 + + +D+G K IG+A+SDP A + K+ T+ + L+F T N+ + Sbjct: 40 ERLLGLDVGDKYIGIAVSDPLGITAQG--YRTWKRGTRD--DDLAFFTDVVEQFNVTTLV 95 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 GLP +M G+E + TR F + +++ + V+ DERLT+ +++++LI+ V R+KR Sbjct: 96 SGLPKDMEGNETAQARKTRNFCQ-FLKKRLNLEVVYIDERLTSKASERVLIEGGVRREKR 154 Query: 133 IQKVDSIAAALILQEVLD 150 + +D++AA +ILQ LD Sbjct: 155 KEYIDTLAAQMILQVYLD 172 >gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Gardel] gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str. Gardel] Length = 156 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I + + + + I +D G K+IG+A+SD A P VRK + L + Sbjct: 6 INEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLYGILIE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + + +IGLPL++ G F + MI +K + DER +T A ++ Sbjct: 66 NDAGSMVIGLPLDLFGMGNELCDKVMLFANRMI-KKYAINIYLHDERYSTAMATRVAKLA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 N+ RK+ + D IAA LILQ+VLD + + Sbjct: 125 NIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155 >gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas] gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis str. Arkansas] Length = 156 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 1/151 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +++ +K + + I +D G K+IG+A+SD A P VR+ + L S Sbjct: 6 VDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLYSIFVE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++ + +IG PL ++G E F + +I R + DER +T A ++ Sbjct: 66 NDVGSIVIGWPLELSGVENELCQKVVMFANRIITR-YKINICLHDERYSTAMATRLAKLA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 N+ RK+ D I+A LILQ+VLD I + Sbjct: 125 NIKRKESQAIDDKISAVLILQQVLDIIKVYQ 155 >gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2] gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2] Length = 138 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 ID G KR+GLAISD R P+L ++ T+ AL ++ I E++ A ++GLPL+ Sbjct: 5 GIDFGLKRVGLAISD--RSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + R F ++ R+ +P DERLT+ A++ L ++ KR +DS Sbjct: 63 MDGEDTLTTRQARNFAQSL-GRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMALDS 121 Query: 139 IAAALILQEVLD 150 AA +IL+ L+ Sbjct: 122 QAAVIILRTWLE 133 >gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B] gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B] Length = 173 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGLPLNM 79 +D+GT RIG+A+SDP R A P L R L L+ + E A ++GLP+++ Sbjct: 13 GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAVEVVVGLPVSL 72 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G+ G + + VP DER TTV A + L ++ ++R VD + Sbjct: 73 RGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAGRQRRAVVDQL 132 Query: 140 AAALILQEVLD 150 AAA++LQ+ LD Sbjct: 133 AAAILLQDALD 143 >gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 142 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 75/133 (56%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +D+G ++IG+A+SD A P+ + K + + ++L I +I ++GLP Sbjct: 2 ERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++NG +G + T++FV + + + ++ DER T+ A + L M++ + K + + Sbjct: 62 KDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKELI 121 Query: 137 DSIAAALILQEVL 149 DS+AAA IL+ L Sbjct: 122 DSLAAASILETYL 134 >gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1] gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1] Length = 140 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIG 74 + I +DLG++ G+AISDP A + + ++A + I EN I ++G Sbjct: 2 EKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MNG G R + F + ++ + V + DERLTTV + LI +VSRKKR + Sbjct: 62 LPKHMNGDLGERAQISIDFKERL-EKMMDVEVILVDERLTTVMMENQLIFADVSRKKRKE 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ LD Sbjct: 121 VIDKLAAVQILQGYLD 136 >gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein [Streptosporangium roseum DSM 43021] gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein [Streptosporangium roseum DSM 43021] Length = 163 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+G+ RIG+A SDP A P + R + L+ L+ I E + ++GLP ++ Sbjct: 10 GVDVGSVRIGVARSDPSGLLATPVETVRRGR---GDLDRLAEIAAEYEVVEIVVGLPTSL 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG + R F + R +P +DERLTTV+AQQ L V K + VD Sbjct: 67 SGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVVDQA 126 Query: 140 AAALILQEVLD 150 AA ++LQ LD Sbjct: 127 AAIVLLQAALD 137 >gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM 4028] gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM 4028] Length = 133 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I ID G KRIGLA++ G F PF K T+ L +L+S I +E + A ++GLP Sbjct: 3 ILGIDYGQKRIGLAMARQGMAF----PFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLP 58 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+MNG E F + + R+ +P +E LT+ A+Q L + V +K + + Sbjct: 59 LDMNGDETLTTRQVLNF-RDSLARRTELPIHLVNEALTSFDARQRLREAGVPERKHKEML 117 Query: 137 DSIAAALILQEVLD 150 D +AA IL+ L+ Sbjct: 118 DQMAAVCILETYLE 131 >gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279] gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279] Length = 142 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G R G+A+SD R A P L +V A + + GLP M Sbjct: 5 ALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTMA 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP+ R V I R +P F DERL++ A++IL + +S K+ KVD I+ Sbjct: 65 GEEGPQAARVRE-VAGRISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMIS 123 Query: 141 AALILQEVLD 150 A+L LQ LD Sbjct: 124 ASLFLQAWLD 133 >gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Roseomonas cervicalis ATCC 49957] gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Roseomonas cervicalis ATCC 49957] Length = 159 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+ + +L +L P+Q + +D G K IG+A++D A P L R K+ A E+ Sbjct: 1 MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + E ++GLPL ++GS GP + + + + +P WDERL++ + + Sbjct: 61 AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTR-ALSEATGLPAALWDERLSSSAVNR 119 Query: 121 ILI 123 +LI Sbjct: 120 MLI 122 >gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce 56'] gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce 56'] Length = 163 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 IDLG R+G+A++D +AHPRP L + L + E I F++GLPL MNG Sbjct: 33 IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 EGP + V DERLTTV A + L D VS +K ++VD AA Sbjct: 93 DEGPAARRA-LAFAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVDGAAA 151 Query: 142 ALILQEVLDR 151 AL+LQ LDR Sbjct: 152 ALLLQAWLDR 161 >gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus NCFM] gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796] gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM] gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796] Length = 142 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 11/137 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+AISD L ++ +T L + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDE---LGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++LI D + RKKR Sbjct: 62 PKNMDGTSGNSVARSKAY-GKRLEEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926] gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926] Length = 139 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SD FAHP + R K T+ + EN + ++G+P +++ Sbjct: 7 ALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIPKSLD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139 G E + R F+ + + + DERL+T+SA+++L + N + + + VD I Sbjct: 66 GQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKVVDKI 125 Query: 140 AAALILQEVLD 150 AAA+ILQ LD Sbjct: 126 AAAIILQTYLD 136 >gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 154 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + VP DER+TTV+A Q L V KK +D A Sbjct: 68 GGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 128 AVIILQQALESERVSGEPPGEG 149 >gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii A2-165] gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii A2-165] Length = 143 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G R GLA+ DP P P + K + A E+ + ++GLPL Sbjct: 3 ILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGLPL 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 NM+G+EG R +R + +++ +P WDER +T A IL ++ R Sbjct: 63 NMDGTEGERAEKSRKLGKTL---QIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAI 119 Query: 136 VDSIAAALILQEVL 149 +DS++A +IL++ L Sbjct: 120 LDSVSATVILEDYL 133 >gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083] gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083] Length = 154 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVGLPRSLK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R FV + VP DER+TTV+A Q L V KK +D A Sbjct: 68 GGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 128 AVIILQQALESERVSGKAPGEG 149 >gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus M045] gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus M045] Length = 154 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 63/140 (45%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVGLPRSLK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + VP DER+TTV+A Q L V KK +D A Sbjct: 68 GGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVLDRISFLESSKG 160 A +ILQ+ L+ SS G Sbjct: 128 AVIILQQALESERVSGSSPG 147 >gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10] Length = 142 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+A+SD L K+ +T L + + F++GL Sbjct: 5 GLDIGSKTVGVAVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR Sbjct: 62 PKNMDGTSGASVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM 13280] gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM 13280] Length = 142 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G R G+A+SD R A P L +V A + + GLP M+ Sbjct: 5 ALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTMS 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP+ R V I +P F DERLT+ A++IL + ++ K+ KVD I+ Sbjct: 65 GEEGPQAEHIRE-VAGRIAAATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMIS 123 Query: 141 AALILQEVLD 150 A+L LQ LD Sbjct: 124 ASLFLQAWLD 133 >gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus MTCC 5463] Length = 142 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+A+SD L K+ +T L + + F++GL Sbjct: 5 GLDIGSKTVGVAVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR Sbjct: 62 PKNMDGTSGASVTRSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122] gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122] Length = 171 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+AISDP R A P L +V A + A + GLP + Sbjct: 23 ALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPFTLA 82 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G +GP+ S + I + +P F DERL++ A++ L + + KVD IA Sbjct: 83 GEQGPQAASLKERAQR-IAKACDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVDMIA 141 Query: 141 AALILQEVLD 150 A++ LQ LD Sbjct: 142 ASIFLQSWLD 151 >gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus GRL 1112] gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus 30SC] gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus GRL 1112] gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus 30SC] gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus GRL 1118] Length = 142 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+A+SD L ++ +T L + + F++GL Sbjct: 5 GLDVGSKTVGVAVSD---ELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+G+ G V ++A+ ++ K +P + DERLTT+ +Q++L+ D + RKKR Sbjct: 62 PKNMDGTSGSSVARSKAY-GKRLEEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces bingchenggensis BCW-1] Length = 154 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 62/130 (47%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + + L + + ++GLP +++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVVVGLPRSLS 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F R VP DER+TTV+A Q L V+ KK VD A Sbjct: 68 GREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKGRSVVDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 128 AVVILQSALE 137 >gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus RS-1] gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus RS-1] Length = 147 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +ID G R+GLA+ PG A P + + LL+ I +N +IG P Sbjct: 2 EKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGYP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G EG R F + R+ VP + DE +T A + L + +S ++ + KV Sbjct: 62 ARAGGDEGLTGRQVRNFAARLA-RRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAKV 120 Query: 137 DSIAAALILQEVL--DRISFLESSKG 160 D++AAA+IL+ L + F SS G Sbjct: 121 DAMAAAVILERYLRGGELCFEPSSLG 146 >gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c] gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c] Length = 197 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+GT RIG+++SDP A P L R + L L+ + E A A ++GLP+ + Sbjct: 49 GVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGLPMTL 108 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG R + ++ R +P DERLTT +A + + + +S + R VD Sbjct: 109 SGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARRGLVDQE 168 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 169 AAVQILQHALD 179 >gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca glomerata] gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca glomerata] Length = 164 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGLPLNM 79 ID+GT RIG+A SDP R A P L R + L+ ++ I + A ++GLP + Sbjct: 10 GIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTRL 69 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G GP R + + R VP DERLTTV A + + + + + R VD Sbjct: 70 SGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQE 129 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 130 AAVQILQSALD 140 >gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440] gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440] Length = 153 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74 +D+G R+G+A SDP A P L R + V EL + +T ++G Sbjct: 11 GVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEAVEVVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+N+ G +GP +A+V +++ VP DER++TV A + L + V +++ Sbjct: 71 LPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQRA 130 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 131 VVDQAAAVEILQSWLD 146 >gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM 17244] gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM 17244] Length = 144 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I ++D G RIG+A+SD A + R K + +E + +I + I+G PL Sbjct: 5 ILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILGHPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N++G G R T F +++ K+ +P WDERL+T A++ L V+ +K+ + +D Sbjct: 65 NLSGERGTRALVTEEFC-DILKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKREVID 123 Query: 138 SIAAALILQEVLD 150 +AA +IL LD Sbjct: 124 MMAAQIILSSYLD 136 >gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium ulcerans ATCC 49185] gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] Length = 139 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G RIG+A SD A P + RKK T+ + EN A ++G+P +++ Sbjct: 7 SLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIPKSLD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 G+E + R F+ + + + DERLTTVSA ++L + N +K ++K VD Sbjct: 66 GTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESN--KKGALEKRKVVD 123 Query: 138 SIAAALILQEVLD 150 IAAA+ILQ LD Sbjct: 124 KIAAAIILQTFLD 136 >gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis V583] gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712] gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613] gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1] gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11] gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248] gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855] gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134] gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860] gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109] gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411] gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0470] gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0635] gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 512] gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 516] gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0102] gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis V583] gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712] gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613] gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1] gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11] gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411] gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109] gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860] gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134] gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855] gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248] gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 512] gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0102] gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0635] gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 516] gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0470] gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX2137] gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX4000] gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0017] gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0027] gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX2141] gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX4244] gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0012] gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0031] gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0043] gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0312] gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0645] gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1302] gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1341] gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0309B] gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0630] gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0309A] gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis OG1RF] gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467] Length = 140 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I +D+G++ +G+A+SD A + + + L + + F++GLP Sbjct: 3 IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN S GPR ++ A+ + I +P + DERLTTV A++ L++ + SR KR + Sbjct: 63 KNMNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAVMILQNYLD 136 >gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC 10712] Length = 156 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + ++GLP +++ Sbjct: 10 AVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEVVVGLPRSLS 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF M VP DER+TTV+A Q L V KK +D A Sbjct: 70 GREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKKGRSVIDQAA 129 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ L +R+S +G Sbjct: 130 AVIILQNALEAERVSGNPPGEG 151 >gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus amylolyticus DSM 11664] gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus amylolyticus DSM 11664] Length = 142 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+AISD G + + + L I E + A F++GLP N Sbjct: 5 GLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136 M+G+ G V ++A+ + +K +P + DERLTTV ++++L++ RKKR Q + Sbjct: 65 MDGTSGHSVDRSKAYGERL-KKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKRKQVI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi str. Boryong] gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong] Length = 157 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I I + +++ + I ID G K++G+AIS+ A P ++ + ++ Sbjct: 1 MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDRVN-KIQ 59 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 NI A +IGLP ++G+E + H + F N + K+ +P DERLT+ +A Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFA-NKLANKLLLPIFLCDERLTSKAANN 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 +L N+ RK R D +AA++IL+ L R+ Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRM 150 >gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes DSM 40736] gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes DSM 40736] Length = 154 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + + L + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVGLPRSLK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R FV + VP DER+TTV+A Q L V KK +D A Sbjct: 68 GGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 128 AVVILQQALESERVSGKAPGEG 149 >gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10] gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci 6BC] gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1] gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci 6BC] gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10] gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci 6BC] Length = 150 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 8/140 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D G KRIGLA + + P F+ K + +LL I E N++ ++G P+ M Sbjct: 12 GVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPM 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138 + + + +++ V + WDERL++ A+++L D +SRKKR K DS Sbjct: 72 QKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDS 131 Query: 139 IAAALILQEVLDRISFLESS 158 IAA LIL SFLESS Sbjct: 132 IAANLIL------TSFLESS 145 >gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827] gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827] Length = 170 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +D+G R+G+A+SDPG A P L R + L+ L+ ++ ++GLP + Sbjct: 19 GVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGLPRTL 78 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G GP + A+ + +R +P DERLTTV+A ++L V KK+ VD Sbjct: 79 AGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAVVDQA 138 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 139 AAVEILQSWLD 149 >gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724] gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724] Length = 141 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID G K IGLAISDP R A K L I N++ ++G P++ Sbjct: 3 VLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYPIS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G E + +V I V +P F DER TT+ A+++L++ ++ R+ R + Sbjct: 63 LRGHENEKTKKI-EYVAERIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLKNK 121 Query: 139 IAAALILQEVLDRISF 154 AA +ILQ+ LD +S Sbjct: 122 QAAVIILQKYLDSLSL 137 >gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680] gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 156 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 10 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLGLPRSLK 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + VP DER+TTV+A Q L V KK +D A Sbjct: 70 GGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRSVIDQAA 129 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 130 AVIILQQALESERVSGKAPGEG 151 >gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B] gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B] Length = 152 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I +ID G R+GLA+SDP R A P F T+ AL ELL IT++ IAA ++G P Sbjct: 4 ILAIDYGQARVGLAVSDPEGRMAFP--FATVAWQTRDALFRELLDVITSQGIAAIVVGYP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G E R FV + R+ +P V DE +T A + L + +S +V Sbjct: 62 ARAGGDESLTGRQVRKFVARL-SRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSARV 120 Query: 137 DSIAAALILQEVL 149 D+ AAA+IL L Sbjct: 121 DAQAAAVILTRYL 133 >gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii DSM 18315] gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii DSM 18315] Length = 140 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GLP Sbjct: 4 IIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKF---LADYVSREPVERFVVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + AFV ++ +P ++DER T+V A + ++D + +KKR K V Sbjct: 61 MNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDKGLV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LE+ K Sbjct: 121 DEISAVIILQ------SYLENKK 137 >gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145] gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145] Length = 138 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S D GTKRIG+A++DP + A+ + K + + L ++ TE++ F++G P Sbjct: 4 IMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEF---LKKYLLTESVETFVVGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+G++ RAFV+ + +P DER T+ A ++ +K R K V Sbjct: 61 MDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDKALV 120 Query: 137 DSIAAALILQEVLDRI 152 D+++A +ILQ ++++ Sbjct: 121 DTVSATIILQSYMEKL 136 >gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake] gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake] Length = 156 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 1/145 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 I++ VK + + I +D G K+IG+A+SD A P +++ + L + Sbjct: 6 IDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLYNIFVE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 N+ + +IG P+ ++G E + N I K + DER +T A ++ Sbjct: 66 NNVGSMVIGWPIELSGIESELCQKV-VLLANRIIAKYKINIYLHDERYSTAMATRVAKLA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 N+ RK+ D IAA LILQ+VLD Sbjct: 125 NIKRKESQSIDDKIAAMLILQQVLD 149 >gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM 271] gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM 271] Length = 142 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D GTKRIGLA +DP + FA P + + + E+ + I +IG PLN Sbjct: 9 IIAVDYGTKRIGLAKTDPLQLFAQPVGTFSEEALFRAIKEISGL---DGIGRILIGYPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 +GS AF + + +P +E ++ SA QILI+ +SRKKR +K + Sbjct: 66 ADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHEKGRL 125 Query: 137 DSIAAALILQEVLDR 151 DS +A ++LQ LD+ Sbjct: 126 DSASACVLLQAHLDK 140 >gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23] gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23] Length = 135 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA+ + G FA R +LVR+ + + LL F+ E +A I+GLPL Sbjct: 3 LGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + E + V + R V V WDER TT +A L ++ K+D Sbjct: 63 TDLKESAQAKRVLPLVEALRARGVEVE--LWDERYTTKAAMARLRHAPRRVREDKGKLDE 120 Query: 139 IAAALILQEVLDR 151 ++A ++L+ L R Sbjct: 121 MSAVVLLEGYLAR 133 >gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei F0204] gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei F0204] Length = 139 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +DLG+ G++ SD G + AL+ +L + E ++GLPL + Sbjct: 6 GLDLGSVTCGVSFSDTGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGLPLLL 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 N GPR F +++++ +P DER TT A+ IL++ +VSRKKR +K+D + Sbjct: 66 NDDVGPRAQICLEF-GEVLEQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKKIDQL 124 Query: 140 AAALILQEVLDR 151 AA ILQ LDR Sbjct: 125 AAVQILQTWLDR 136 >gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC 4571] gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC 4571] Length = 142 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+G+K +G+++SD L K+ +T L + + F++GL Sbjct: 5 GLDIGSKTVGVSVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR Sbjct: 62 PKNMDGTSGASVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom phytoplasma AYWB] gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom phytoplasma AYWB] Length = 151 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 1/140 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74 N +DLG K +G+A+S G + + F K Q L I+ I I+G Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILG 65 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G + + F + ++ V + WDERL+TV A QIL N + K +Q Sbjct: 66 YPKHMNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQ 125 Query: 135 KVDSIAAALILQEVLDRISF 154 D IAA++ILQ LD I Sbjct: 126 MKDEIAASIILQNYLDYIKL 145 >gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G R+G+A+ DPG R A P L +V A + + GLP Sbjct: 3 IMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLPYT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G EGP+ + + + +P F DERL++ A++ L + + ++ K+D Sbjct: 63 LAGQEGPQAARI-RAAADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKIDM 121 Query: 139 IAAALILQEVLD 150 IAA+L LQ LD Sbjct: 122 IAASLFLQAWLD 133 >gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC 43184] gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC 43184] Length = 140 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GLP Sbjct: 4 IIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRF---LADYVSREPVERFVVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + AFV ++ +P ++DER T+V A + ++D + +KKR K V Sbjct: 61 MNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDKGLV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LE+ K Sbjct: 121 DEISAVIILQ------SYLENKK 137 >gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor A3(2)] gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 167 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 21 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVGLPRSLK 80 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + VP DER+TTV+A Q L V KK +D A Sbjct: 81 GGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 140 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 141 AVIILQQALESERVSGRPPGEG 162 >gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1342] Length = 140 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I +D+G++ +G+A+SD A + + + L + + F++GLP Sbjct: 3 IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135 NMN S GPR ++ A+ + I +P + DERLTTV A++ L++ + SR KR + Sbjct: 63 KNMNNSIGPRAEASIAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDKLAAVMILQNYLD 136 >gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333] gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333] Length = 152 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 67/133 (50%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M+ Sbjct: 8 AIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLPKLMS 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R++ ++ R +P DERL++ A L + V +++ + VD +A Sbjct: 68 GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMVDQLA 127 Query: 141 AALILQEVLDRIS 153 A IL L+ ++ Sbjct: 128 AVTILTRALETLT 140 >gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme BU-1] gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme BU-1] Length = 145 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 5/140 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P + + +ID GTKRIG+A SDP FA P R +++ L + I +++IA I Sbjct: 3 LTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSKA---LGTMIQSDDIALVI 59 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G PL+ NG + F+ + + + DE ++ A+ IL+ SRK R Sbjct: 60 VGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKVR 119 Query: 133 IQK--VDSIAAALILQEVLD 150 QK VDS AA ++L+E L+ Sbjct: 120 QQKGRVDSAAACILLREYLE 139 >gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS] gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS] gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS] gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS] Length = 169 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ID+G+ R+G+A SDP A P + R+K + + L+ + TE ++GLP + Sbjct: 24 GIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVVVGLPRTL 83 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 GP H + R VP DERLTTVSAQ+ L + V K + +D + Sbjct: 84 ADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQRAMIDQV 143 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 144 AAVGILQSWLD 154 >gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17] gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574] gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17] gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574] Length = 139 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 14/138 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 I SID G KR GLA++DP + A+ T +++EL F+ T E + +IG Sbjct: 3 IVSIDYGKKRTGLAVTDPLQIIANGL-------ATVSSVELFGFLETYVKKEGVERIVIG 55 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P MNG + F + +P ++DER T+V A + +ID V +K R + Sbjct: 56 RPTQMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQE 115 Query: 135 K---VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 116 NKGLVDEISATIILQDYM 133 >gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333] gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333] Length = 163 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G+ R+G+A DP A P L R+ E+ + ++ +IGLP ++ Sbjct: 4 GVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRALD 63 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG RA+ + VP DERL+TV+A + + + + ++ + VD A Sbjct: 64 GHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQAA 123 Query: 141 AALILQEVLD 150 A +ILQ LD Sbjct: 124 AVVILQSALD 133 >gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76] gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 137 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 +D+G++ +G+A+SD A + + + L + + F++GLP N Sbjct: 2 GLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPKN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MN S GPR ++ A+ + I +P + DERLTTV A++ L++ + SR KR + +D Sbjct: 62 MNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVID 120 Query: 138 SIAAALILQEVLD 150 +AA +ILQ LD Sbjct: 121 KLAAVMILQNYLD 133 >gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum NCIMB 41171] Length = 145 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 13/140 (9%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNMNGS 82 +G R+GLA+SDP FAHP + + AL+ +++ I E + ++GLPL ++G+ Sbjct: 1 MGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGT 60 Query: 83 EGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNVSRK 130 EG R + + N++D ++P V DERLTTVSA + L++ + + Sbjct: 61 EGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSR 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 + VD +A +ILQ LD Sbjct: 121 RHRPVVDQQSAVVILQTALD 140 >gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1] gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1] Length = 144 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + I +ID G KR GLA +DP FA P +K+ + SF+ ++ I+G Sbjct: 5 PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKIITI---IKSFLQENSVEKIIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PLN +G++ P F+ + +P DE ++ A ++LI+ +SRKKR + Sbjct: 62 YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121 Query: 135 K--VDSIAAALILQEVLD 150 K +DS AA L+LQ L+ Sbjct: 122 KGRLDSAAACLLLQHYLE 139 >gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5] gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5] Length = 152 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G++R+G+A+SD RR A L R+ Q + +I + ++G+PL+ Sbjct: 4 ILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGIPLD 63 Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136 +GS P+ A + +R VP + DER +T + LI + ++SRKKR + V Sbjct: 64 SRDGSFTPKAMEIGAEARQLQER-FAVPVIGVDERFSTSKSNDFLIGVADLSRKKRKKVV 122 Query: 137 DSIAAALILQEVLD 150 D++AA ILQ LD Sbjct: 123 DTMAAQNILQGYLD 136 >gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS] gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS] Length = 169 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ID+G R+G+A SDP A P + R+K + + L+ + TE ++GLP + Sbjct: 24 GIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVVVGLPRTL 83 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 GP H + R VP DERLTTVSAQ+ L + V K + +D + Sbjct: 84 ADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQRAMIDQV 143 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 144 AAVGILQSWLD 154 >gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC2047] Length = 142 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 4/128 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT RIG+A A P P L + +L I AF++G+PLN Sbjct: 9 ILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGVPLN 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+EGP R F N + + + P DERL+T+ A++ L + N K +DS Sbjct: 69 MDGTEGPITPRARKFA-NRLHGRFHKPIYTMDERLSTIEAKEKLAEFN---NKNSIGLDS 124 Query: 139 IAAALILQ 146 +AA LIL+ Sbjct: 125 MAATLILE 132 >gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201] gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201] Length = 165 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFIIGLPL 77 +D+GT R+G+A++DP A P L R + A + + ++ +GLP Sbjct: 12 GVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLPR 71 Query: 78 NMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 ++NG E R + ++ R DERL+TV+A + L+D VSR++ + Sbjct: 72 SLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREHM 131 Query: 134 QKVDSIAAALILQEVLDR 151 +VD AA LQ +D+ Sbjct: 132 DRVDQAAAVTFLQTAVDQ 149 >gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium SGP1] Length = 146 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 17 QP--IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKKVTQTALE--LLSFITTENIA 69 QP + ++D+G+ R+G AISDP R A P + R + E L+ + T Sbjct: 5 QPGRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPT---- 60 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++G+P +G+ GP V + + F WDER TTV A + +I+ VSR Sbjct: 61 LVLVGMPTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSR 120 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 R Q+VD IAA LIL+ L R Sbjct: 121 SGRRQRVDKIAAVLILESWLAR 142 >gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM 44233] gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM 44233] Length = 169 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 12/142 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 +D+GT R+G+A SDP A P L R + T +++A Sbjct: 20 GVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRDLVVEHDV 79 Query: 72 ---IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP + G EG V + RA+ + VP V+ DERLTTV+A ++L + Sbjct: 80 VEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRVLAQAGIK 139 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 K R VD +AA ILQ LD Sbjct: 140 GKARRAVVDQVAATRILQNRLD 161 >gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132] gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans ND132] Length = 138 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 5/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 ID G KR+GLA+SD P L ++ T+ AL EL I E I A ++GLPL Sbjct: 5 GIDFGLKRVGLAVSDRTGTLVSPLKTL--ERTTRQALFDELTEIIHDEAIEAVVVGLPLA 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G + R F ++ R++ P DERLT+ A++ L + KR +DS Sbjct: 63 LSGEDTLTTRQARNFAESL-GRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAALDS 121 Query: 139 IAAALILQEVLD 150 AA +IL+ LD Sbjct: 122 QAAVVILRSWLD 133 >gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC BAA-798] gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC BAA-798] Length = 149 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 8/138 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID G KRIG+A+SDP A + R + E+ EN+ ++GLPL+ Sbjct: 3 VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133 M+G EG R I+ +P DERLT+V A++ L++ + RKK Sbjct: 63 MSGYEGEEAVRARELA-KQIETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKK-- 119 Query: 134 QKVDSIAAALILQEVLDR 151 +D+ AAA++LQ+ LD+ Sbjct: 120 LAIDAEAAAVLLQDYLDQ 137 >gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000] gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000] Length = 163 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 17 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVGLPRSLK 76 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + VP DER+TTV+A Q L V KK +D A Sbjct: 77 GGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 136 Query: 141 AALILQEVL--DRISFLESSKG 160 A +ILQ+ L +R+S +G Sbjct: 137 AVIILQQALESERVSGRPPGEG 158 >gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064] gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus ATCC 27064] gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064] Length = 157 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 61/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V + + + ++GLP ++N Sbjct: 11 ALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPIEIVVGLPRSLN 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + VP DER+TTV+A Q L V KK VD A Sbjct: 71 GREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKAKKGRSVVDQAA 130 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 131 AVVILQNALE 140 >gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC BAA-835] gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC BAA-835] Length = 141 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 P ID G RIG+A +DP AHP + R + T ++ + I ++GLP Sbjct: 5 HPALGIDYGEARIGIAATDPVGIMAHPVETIHRHQ-TDGISRIVQLVQERGIRTLVLGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + M+G+EG RAF + +P +F DE LTTV AQ+ L K + Sbjct: 64 VRMDGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNFRPII 123 Query: 137 DSIAAALILQEVLD 150 D +AA IL LD Sbjct: 124 DQVAAVEILNTWLD 137 >gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896] Length = 140 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G +RIG+A+SD P + R K + +++ I +I + GLP N Sbjct: 6 ILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGLPKN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 M+G+ G + T FV + +++ P VF DERL+T SA+Q++ V +K + Sbjct: 66 MDGTVGFQGEKTMQFVEQL--QQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKNM 123 Query: 136 VDSIAAALILQEVL 149 +D+IAA IL+ L Sbjct: 124 IDTIAAVFILETYL 137 >gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 138 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D G KR G+A++DP + + LV + LL +I E + ++G P Sbjct: 4 ILSVDYGKKRTGIAVTDPLQIICNG---LVTVSSSTLVDFLLDYIQKEEVELIVVGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG + + FV +P V++DER T+V A + +ID + +K R K V Sbjct: 61 TNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES + Sbjct: 121 DEISATIILQ------SYLESKR 137 >gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1] gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1] gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus CTV-05] gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1] gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1] gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus CTV-05] Length = 142 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78 +D+G+K +G+AISD G + + + L + + F++GLP N Sbjct: 5 GLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRIQKV 136 M+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR Q + Sbjct: 65 MDGTSGSSVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRKQVI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi str. Ikeda] gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str. Ikeda] Length = 157 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGL 75 + I ID G K++G+AIS+ A P + Q + + I NI A +IGL Sbjct: 17 KQILGIDFGEKKVGVAISNIEHTVAMPLQTIF--ATNQDRINKIQEIAVAYNIGAIVIGL 74 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++G+E + H + F N + K+ +P DERLT+ +A +L N+ RK R Sbjct: 75 PFKLDGTETSQTHRVKDFA-NKLANKLLLPIFLCDERLTSKAANNLLKMGNIKRKVRNAI 133 Query: 136 VDSIAAALILQEVLDRI 152 D +AA++IL+ L R+ Sbjct: 134 DDRVAASIILEGTLKRM 150 >gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC 43063] gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC 43063] gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 152 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 66/133 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M+ Sbjct: 8 AIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLPKLMS 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R++ ++ R +P DERL++ A L V +++ + VD +A Sbjct: 68 GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQLA 127 Query: 141 AALILQEVLDRIS 153 A IL L+ ++ Sbjct: 128 AVTILTRALETLT 140 >gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC 51259] gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC 51259] Length = 138 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 21/148 (14%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFI----TTENIAAFII 73 I +ID G KR G+A++D + ++ +T A ELL+F+ T E++ F+I Sbjct: 4 ILAIDYGKKRTGIAVTDILQ--------IIPNGLTTVATHELLNFLKAYTTKEDVERFVI 55 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NG AF + +P F+DER T+ A Q ++ + +K+R Sbjct: 56 GLPRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQ 115 Query: 134 QK--VDSIAAALILQEVLDRISFLESSK 159 +K VD I+A +ILQ S++ES K Sbjct: 116 EKALVDEISACIILQ------SYMESKK 137 >gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286] Length = 141 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 ++D GTKR G+A+SD + A+ + T T + L +++ E++ I+GLP M Sbjct: 6 ALDYGTKRTGIAVSDTLKIIANG----LTTVPTHTLFDYLKTYLEREDVECIIVGLPKQM 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137 N + R FV + + +P +DER T+ AQ+ +ID + +K R K VD Sbjct: 62 NNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNKALVD 121 Query: 138 SIAAALILQEVLDRISFLES 157 I+A +ILQ S++ES Sbjct: 122 EISAVIILQ------SYMES 135 >gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6] gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6] gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus TK-6] Length = 133 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 7/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D G+KRIGLA+ D A P F R+ V + ++ + I+ ++ I+GLPL Sbjct: 3 VLALDYGSKRIGLALGDTSLNIASPLGVFENREGVVE---KIRNLISEYRVSLLIVGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G +G R FV + + + + WDER TT A +L D+ +++K+++ Sbjct: 60 TPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLLQDLPPTKRKKLK-- 117 Query: 137 DSIAAALILQEVLDRI 152 DS++A +IL+E L+ + Sbjct: 118 DSLSAYIILKEYLESL 133 >gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78] gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78] Length = 157 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 62/130 (47%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V + + + ++GLP ++ Sbjct: 11 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + VP DER+TTV+A Q L V+ KK +D A Sbjct: 71 GGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 130 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 131 AVIILQTALE 140 >gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis ATCC 33277] gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277] Length = 150 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID G KR GLA++DP + P + T T L+ L +++ E + F++GLP Sbjct: 16 ILAIDYGRKRTGLAVTDPLKII----PGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPR 71 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MN E + R F + +P + DER T+ AQ+ +++ + + KR K Sbjct: 72 RMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 131 Query: 136 VDSIAAALILQEVLD 150 VD ++A +ILQ LD Sbjct: 132 VDEVSAVIILQSYLD 146 >gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis W83] gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis W83] Length = 138 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID G KR GLA++DP + P + T T L+ L +++ E + F++GLP Sbjct: 4 ILAIDYGRKRTGLAVTDPLKII----PGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPR 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MN E + R F + +P + DER T+ AQ+ +++ + + KR K Sbjct: 60 RMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 119 Query: 136 VDSIAAALILQEVLD 150 VD ++A +ILQ LD Sbjct: 120 VDEVSAVIILQSYLD 134 >gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium HTCC2181] gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium HTCC2181] Length = 148 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAA 70 +++PN + + D G K+IG+AI + + AHP +RK +E++ + E Sbjct: 9 NIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLE-TIRKVKKSERIEIIENLLNEWEPGI 67 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SR 129 ++GLPLN +G+E + F + +R VP V DER T+V A +IL++ NV S Sbjct: 68 VVVGLPLNEDGTESRLTLLAQNFAKKIKNR-FQVPIVMVDERYTSVEA-KILLNENVKSI 125 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 KK Q +D +AA +IL DR Sbjct: 126 KKGNQVIDQVAAQIILGSYFDR 147 >gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis Il1403] gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis Il1403] Length = 119 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP +MNG EG R ++R + + + + + + DERLTT A+++LID V RK+ Sbjct: 36 VLGLPKHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKE 94 Query: 132 RIQKVDSIAAALILQEVLD 150 R + +D +AA LILQ LD Sbjct: 95 RKKSIDKLAAVLILQNYLD 113 >gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1] gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1] Length = 137 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 14/140 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +IDLGTKR GLA++DP + A+P + K+ + ++I E + ++GLP Sbjct: 4 VLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDF---IKAYIAKEEVDTLVLGLPTK 60 Query: 79 MNGSEG---PRVHSTRAFVH-NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +NG + P+V + + + N +KV DER T+ A Q +I M +K R + Sbjct: 61 LNGKDNEMTPKVMAMKTKLEKNFPSQKVE----LVDERFTSKMAMQSMITMGSKKKDRRE 116 Query: 135 K---VDSIAAALILQEVLDR 151 K +D ++AA+ILQ L+R Sbjct: 117 KAGNLDKVSAAIILQSYLER 136 >gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21] gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21] Length = 137 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GTKRIG+A++DP + A + K V + L +++ E + +F++G+P Sbjct: 3 IMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEY---LKKYVSQEQVESFVVGMPKQ 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 ++GS+ + F++ + +P V DER T+ A + + + R KR +K V Sbjct: 60 LDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGLV 119 Query: 137 DSIAAALILQEVLDRI 152 D+I+A +ILQ+ L I Sbjct: 120 DAISAVIILQDYLKTI 135 >gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str. F0108] gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str. F0108] Length = 138 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D G KR G+A++DP + + LV + LL + E + ++G P Sbjct: 4 ILSVDYGQKRTGIAVTDPLQIICNG---LVTVSSSTLVDFLLDYTKREEVELIVVGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG + R FV +P V++DER T+V A + +ID + +K R K V Sbjct: 61 TNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES + Sbjct: 121 DEISATIILQ------SYLESKR 137 >gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071] gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071] Length = 154 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 62/130 (47%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V + + + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + VP DER+TTV+A Q L V+ KK +D A Sbjct: 68 GGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 128 AVIILQTALE 137 >gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] Length = 139 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SD A P + R+KV + + + EN + +IG+P +++ Sbjct: 7 ALDVGDVRIGVAKSDIMGILATPLEVIDRRKV-KAVKRIEEILIQENTKSLVIGIPKSLD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 G+E + R F+ + + DERLTTVSA ++L + N +K ++K VD Sbjct: 66 GTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETN--KKGALEKRKVVD 123 Query: 138 SIAAALILQEVLDR 151 +AAA+ILQ LDR Sbjct: 124 KVAAAIILQTFLDR 137 >gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC 33331] Length = 157 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 59/130 (45%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + I+GLP ++ Sbjct: 11 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVGLPRSLG 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF +P DER+TTV+A Q L V KK +D A Sbjct: 71 GGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRSVIDQAA 130 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 131 AVVILQNALE 140 >gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 152 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 66/133 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M+ Sbjct: 8 AIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLPKLMS 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R++ ++ R +P DERL++ A L V +++ + VD +A Sbjct: 68 GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQLA 127 Query: 141 AALILQEVLDRIS 153 A IL L+ ++ Sbjct: 128 AVTILTRALETLT 140 >gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC 33269] gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC 33269] Length = 137 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G KR G+A++DP + A L ++ L+ ++ E + +IG P+ Sbjct: 4 ILSIDYGRKRTGVAVTDPLQLIAGG---LATVATSELFNYLMQYVQHEEVERIVIGKPMQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG + FV +P ++DER T+V AQ+++ID + +K R K V Sbjct: 61 TNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKALV 120 Query: 137 DSIAAALILQEVL 149 D I+A +IL++ + Sbjct: 121 DEISATIILEDWM 133 >gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 148 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID G KR GLA++DP R P + + L+ LS +I E + ++G P Sbjct: 4 ILAIDYGKKRTGLAVTDPLRI----TPGGLATVASSELLQYLSEYIPREGVDLVVVGYPR 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MN E + FV + R + V++DER T+ AQ+ +++ + ++KR K Sbjct: 60 QMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNKAL 119 Query: 136 VDSIAAALILQEVLDRISF 154 VD ++A +ILQ ++ +++ Sbjct: 120 VDEVSAIIILQSYMESLAY 138 >gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075] gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075] Length = 136 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A+SD A P L R+ + + E ++GLPL+ + Sbjct: 2 ALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLHND 61 Query: 81 --GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E RV S + + R++ +P F +E TT+ A + +++ ++SRK+R + VD Sbjct: 62 QIGPEAQRVIS----LGRRLQRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDK 117 Query: 139 IAAALILQEVLD 150 +AAALIL+ LD Sbjct: 118 VAAALILRRWLD 129 >gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis] gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis] Length = 168 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELL 60 I L DL+KS K N + +D+G K +GLAISD + A P L+RKK + A + Sbjct: 7 IALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDFQ 65 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSA 118 S I+ ++A F++G P + S +H + F+ ++ I + + + FWDE T+ + Sbjct: 66 SLISELSLAGFVVGYPFDRQRSTPDALH-VKLFIDDLRKIGKLEGLKYTFWDECFTSKNV 124 Query: 119 QQIL--IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + ++ +D++ K I +D AA ILQ LD ++ Sbjct: 125 ELLVQPLDLHPVEAKTI--MDKFAAVGILQGYLDYVN 159 >gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 142 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78 +D+G+K IG+A+SDP G + + + L + E A F++GLP N Sbjct: 5 GLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136 M+G+ G V ++A +++K +P + DERLTTV++++IL++ R++R + V Sbjct: 65 MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1] gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1] Length = 134 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+SDP + A P L RK +T ELL + + + ++G+P+N Sbjct: 2 ALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINAQ 61 Query: 81 GSE---GPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G + G ++ A + + + + Y +P DE +T A+++ + K +++ Sbjct: 62 GEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEEL 117 Query: 137 DSIAAALILQEVLD 150 D AAALIL+E L+ Sbjct: 118 DDYAAALILKEWLE 131 >gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74] gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74] Length = 142 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G KR G+A++DP + A + +V + L +++ E + AF++GLP ++ Sbjct: 6 AIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKF---LKAYLVREPVEAFVVGLPKGLD 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 G + R FV ++ + +P + DER T+V A Q +I ++K R +K +D Sbjct: 63 GEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREKGNIDK 122 Query: 139 IAAALILQEVLDR 151 ++AA+ILQ ++R Sbjct: 123 VSAAIILQSYMER 135 >gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13] Length = 140 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 13/137 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFII 73 I ++D G R GLA D A P +++T E+ T E ++ Sbjct: 3 ILAVDFGDARTGLACCDRSELLASPAGV-----ISETDFEVCIQKTAEAAREHRAEQIVV 57 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKR 132 G P NMNG+ G R F + R + + V WDER TTVSA + L N KKR Sbjct: 58 GYPKNMNGTIGERAEKCALFAEKL--RTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKR 115 Query: 133 IQKVDSIAAALILQEVL 149 VD++AA +IL+ L Sbjct: 116 KAVVDAVAATIILESYL 132 >gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4] gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4] Length = 166 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79 ++D+G+ R+G+A+SDP A P L R + L+ L+ + TE+ + I+GLP + Sbjct: 24 AVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVIVGLPRTL 83 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G A+ + R VP DERLTTV+A ++L V +K+ VD Sbjct: 84 ANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQRAVVDQA 143 Query: 140 AAALILQEVLDRISFLESSKG 160 AA ILQ LD + + KG Sbjct: 144 AAVEILQAWLDAAAAHRARKG 164 >gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22] gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei 87.22] Length = 154 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 60/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + I+GLP ++ Sbjct: 8 ALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVGLPRSLK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + VP DER+TTV+A Q L V KK +D A Sbjct: 68 GGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ+ L+ Sbjct: 128 AVIILQQALE 137 >gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans ASO3-1] gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans ASO3-1] Length = 140 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID G KR+GLA+SD + P + R LELL+ I I A ++GLPL + Sbjct: 5 GIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGPD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + F+ ++ DR+ +P +E T++ A+ IL + +K+ + +D A Sbjct: 65 GEKSLTCRQAENFMQSL-DRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLDQAA 123 Query: 141 AALILQEVLDRISFLES 157 A +IL+ L I E Sbjct: 124 AVIILESFLAGIPLREG 140 >gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM 16992] gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM 16992] Length = 151 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 13/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 IDLG R+GLA+SDPG A+P + + AL E++ I E + I+GLPL + Sbjct: 5 GIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPLLL 64 Query: 80 NGSEGPRVHSTRAFVHNM-------IDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127 +G EG R + N+ ++ Y VP + DERLTTV+A L D + Sbjct: 65 SGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDAQI 124 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + VD +A +ILQ +DR Sbjct: 125 GGHEHRPMVDQQSAVVILQTAIDR 148 >gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106] gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106] Length = 149 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D FA L R + +L + + ++GLP +MN Sbjct: 14 GLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSMN 73 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G + + + + + + +P + DERLT+ A+Q+L D ++S + +D A Sbjct: 74 GTIGFQAKKVQKYATGLA-KALDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRKA 132 Query: 141 AALILQEVLDR 151 AA+ILQ+ LD+ Sbjct: 133 AAIILQQWLDQ 143 >gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 142 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78 +D+G+K IG+A+SDP G + + + L + E A F++GLP N Sbjct: 5 GLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136 M+G+ G V ++A +++K +P + DERLTTV++++IL++ R++R + V Sbjct: 65 MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 142 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78 +D+G+K IG+A+SDP G + + + L + E A F++GLP N Sbjct: 5 GLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136 M+G+ G V ++A +++K +P + DERLTTV++++IL++ R++R + V Sbjct: 65 MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501] gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501] Length = 143 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A + RK Q +L + +T N+ ++GLP M+ Sbjct: 8 GLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVVGLPYCMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + F I + + +P + DERLT+V A+ L + VD +A Sbjct: 68 GSIGFQAKQVQKFAKR-ISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNKGLVDRLA 126 Query: 141 AALILQEVLD--RISFL 155 A +ILQ+ LD R SF+ Sbjct: 127 ATIILQQWLDQRRASFV 143 >gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis ATCC 25196] gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC 25196] Length = 151 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 6 IEDLVKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 +E+ K+ +P+ A + D G KRIG+AI + AHP L K + + + Sbjct: 1 MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD 60 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 ++GLP++ +G+E +R F H + R + V DER T++SA L + Sbjct: 61 EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQAR-FGIRTVLEDERYTSISASSALDE 119 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151 +V +++ Q +D IAA LILQ D+ Sbjct: 120 ASVRGRRQKQVLDQIAAQLILQSYFDQ 146 >gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM 43160] gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM 43160] Length = 222 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+GT R+G+AISDP A P + R + + + + + I+G P +++ Sbjct: 87 GIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHLS 146 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G RA+ + R VP DERL+TV+A L + +++ +D A Sbjct: 147 GASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQAA 206 Query: 141 AALILQEVLD 150 A +ILQ LD Sbjct: 207 AVVILQAYLD 216 >gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 434/Bu] gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70] gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70s] gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis D(s)2923] gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis L2tet1] gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis] gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu] gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis Sweden2] gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis E/150] gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis E/11023] Length = 148 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 14 KPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIA 69 K Q ID G KRIGLA S P P P R +T TA L+S I + Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSP---LLIPLPIGNVEARSSLTLTAQALVSIIKERAVT 61 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS 128 + G PL M + V S + +I + + WDERL++ A+++L D ++ Sbjct: 62 TVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLN 121 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 RK+R DS+AA LIL LD Sbjct: 122 RKQRKNSSDSLAATLILSSFLD 143 >gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold, yqgF family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 155 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 + +KS+ ++ I +D+G K+IG+A SD + A RK +++ L Sbjct: 8 EFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLNRIFKKNE 67 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + +IGLPL ++G + + F + MI +K V DE L+T A L V Sbjct: 68 AGSIVIGLPLEIDGQKSEWCKTIIKFANKMI-KKYKVSTYLQDESLSTSIAAHTLKISGV 126 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLE 156 S K + D I+A +ILQ LD+I+ ++ Sbjct: 127 STTKSKRIDDKISACIILQRTLDKINVIK 155 >gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712] gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712] Length = 141 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 5/135 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR+GLA+SDP A ++ +++ + L ++++ E + F++G P Sbjct: 4 ILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRF---LEAYLSHEKVDLFVVGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+ S+ + + F+ + R ++P V +DER T+V A + L++ +K R K + Sbjct: 61 MDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDKALI 120 Query: 137 DSIAAALILQEVLDR 151 D+++A +IL +++ Sbjct: 121 DTMSATIILTSYMEQ 135 >gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 144 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID G KR G+A++DP + A+ + V ++S++ E++ ++GLP Sbjct: 4 VLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVRQEHVERIVVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K V Sbjct: 61 ANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNKALV 120 Query: 137 DSIAAALILQ 146 D I+A +ILQ Sbjct: 121 DEISATIILQ 130 >gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] Length = 143 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130 P NM+GS G V ++ + + + K +P + DERLTTV A +IL++ V RK Sbjct: 62 PKNMDGSSGRSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 K I D +AA LILQ L+ Sbjct: 121 KVI---DQMAAVLILQNYLE 137 >gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4] gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4] Length = 139 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR+GLA++D A+ + +V T LE +I E + F+IGLP Sbjct: 4 ILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEVL-TYLE--KYIAKEPVEKFVIGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MNG + + R F + + + V+ DER T+V A + +++ + +K R K V Sbjct: 61 MNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNKELV 120 Query: 137 DSIAAALILQEVLDRI 152 D I+A +ILQ L+ I Sbjct: 121 DKISATIILQSYLESI 136 >gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 138 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 5/137 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTKRIG+A++DP + A+ + ++ L +++ TE + F++G P M+ Sbjct: 5 AFDYGTKRIGIAVTDPLQIVANALTTVHPDEIVDF---LKNYLQTEQVETFVVGKPRQMD 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 GS+ F+ + + +P DER T+ A ++ + + KR QK VD+ Sbjct: 62 GSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGLVDT 121 Query: 139 IAAALILQEVLDRISFL 155 I+A +ILQ +D SFL Sbjct: 122 ISATIILQSYMDSRSFL 138 >gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis audaxviator MP104C] gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis audaxviator MP104C] Length = 141 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G +RIG+A++D A+P L R + + I + + GLP Sbjct: 3 LMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPKT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G GP+ +F+ + R VP + WDERLTT +++L+ ++ R++R + VD Sbjct: 63 LSGQIGPQGDKVLSFLDKLRVRST-VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVDK 121 Query: 139 IAAALILQEVLD 150 +AA LIL L+ Sbjct: 122 LAATLILNSYLN 133 >gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 138 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 5/139 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTKRIG+A++DP + A+ L + L +++ TE + F++G P Sbjct: 3 LMAFDYGTKRIGIAVTDPLQIVANA---LTTVHPNEIFDFLKNYLQTEQVETFVVGKPRQ 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+GS+ F+ + + +P DER T+ A ++ + + KR QK V Sbjct: 60 MDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGLV 119 Query: 137 DSIAAALILQEVLDRISFL 155 D+I+A +ILQ +D SFL Sbjct: 120 DTISATIILQSYMDSRSFL 138 >gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis DSM 16047] gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis DSM 16047] Length = 142 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +D+G+K +G+A+SD A + K L + + F++GLP N Sbjct: 5 GLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRIQKV 136 M+G+ G V ++A+ + D K +P + DERLTT+ ++++L+ D + RKKR Q + Sbjct: 65 MDGTSGASVARSKAYGKRLED-KFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRKQVI 123 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 124 DQMAAVLILQNYLD 137 >gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026] Length = 143 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130 P NM+GS G V ++ + + + K +P + DERLTTV A +IL++ V RK Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 K I D +AA LILQ L+ Sbjct: 121 KVI---DQMAAVLILQNYLE 137 >gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 141 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G K+IG+A+SDP A+P + RK +T +LL I ++ IIG+P++ Sbjct: 4 VMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGIPIS 63 Query: 79 MNGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 G E + F + +R + VF DE +++ A+++ + + K + Sbjct: 64 SEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLGKTEK---E 120 Query: 135 KVDSIAAALILQEVL 149 ++D IAAAL+L+E L Sbjct: 121 EIDDIAAALMLKEWL 135 >gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis 3_1_12] gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 138 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 I +ID G KR G+A+SD + A+ T + ELL FIT E + IIG Sbjct: 4 IIAIDYGRKRTGIAVSDAMQIIAN-------GLTTVPSHELLDFITNYVKQEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +I+ + +K R Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISFLESSK 159 K VD I+A +ILQ S+LES + Sbjct: 117 KALVDEISATIILQ------SYLESKR 137 >gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium mcbrellneri ATCC 49030] gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium mcbrellneri ATCC 49030] Length = 147 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ID+G R+G+A SDP A P + R+ AL + I E + +IG P ++ Sbjct: 8 GIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVIGDPTSL 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G R F ++DR +P + DER TT A +L + + K+R + VD+ Sbjct: 68 DGKARQSADKARRFAQKIVDR-TGLPVRYVDERFTTTQAHLMLQEAGKTSKQRRETVDAQ 126 Query: 140 AAALILQEVLDRISFLESS 158 AA +ILQ LD ++ ++S Sbjct: 127 AAVVILQTALDALAREDNS 145 >gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str. F0039] gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str. F0039] Length = 137 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID G KR GLA++D + A+ + T T E L ++I E + IIGLP Sbjct: 4 ILAIDYGQKRTGLAVTDTLQLIANGLDTIP----THTLYEFLCAYIEKEPVERIIIGLPR 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV + VP ++DER T+V A + +ID + +K R K Sbjct: 60 QTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDKAL 119 Query: 136 VDSIAAALILQEVLD 150 VD I+A +ILQ+ L+ Sbjct: 120 VDKISATIILQDYLE 134 >gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis Fe/C-56] gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56] Length = 150 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 8/139 (5%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D G +RIGLA + + P F+ K + TA L I ++ ++G P+ M Sbjct: 13 VDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCVVLGNPIPMQ 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVDSI 139 + + + ++I +V V WDERL++ A+++L D +SRK+R K DS+ Sbjct: 73 IGQKSSLQEEILKISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSRKQRKGKTDSV 132 Query: 140 AAALILQEVLDRISFLESS 158 AA LIL +FLESS Sbjct: 133 AATLIL------TNFLESS 145 >gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis D/UW-3/CX] gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis A/HAR-13] gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis B/Jali20/OT] gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 6276] gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 6276s] gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX] gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13] gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis B/Jali20/OT] gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/9768] gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/11222] gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/11074] gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/9301] gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC] gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC] Length = 148 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 14 KPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIA 69 K Q ID G KRIGLA S P P P R +T TA L+S I + Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSP---LLIPLPIGNVEARSSLTLTAQALVSIIKERAVT 61 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS 128 + G PL M + V S + +I + + WDERL++ A+++L D ++ Sbjct: 62 TVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLN 121 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 RK+R DS+AA LIL LD Sbjct: 122 RKQRKNPSDSLAATLILSSFLD 143 >gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533] gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533] Length = 143 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130 P NM+GS G V ++ + + + K +P + DERLTTV A +IL++ V RK Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 K I D +AA LILQ L+ Sbjct: 121 KVI---DQMAAVLILQNYLE 137 >gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W] Length = 151 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 1/140 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74 N +DLG K +G+A+S G + + F K + L I+ I ++G Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLG 65 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q Sbjct: 66 YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQ 125 Query: 135 KVDSIAAALILQEVLDRISF 154 D IAA +ILQ LD I Sbjct: 126 MKDEIAATIILQNYLDYIKL 145 >gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39] gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39] Length = 138 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%) Query: 19 IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 I + D GTKR+G+A++DP G HP+ + L ++ TE + AF+ Sbjct: 4 ILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEY---------LKKYLLTEQVEAFV 54 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IG P M+GS + F + +P + DER T+ A Q ++ + ++ R Sbjct: 55 IGDPKQMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDR 114 Query: 133 IQK--VDSIAAALILQEVLDR 151 K VD+IAA +ILQ +++ Sbjct: 115 KDKSRVDTIAATIILQYFMEQ 135 >gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1] gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22] gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1] gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22] Length = 143 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 17/146 (11%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+GS G V ++ + + + K +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159 + +D +AA LILQ S+LE+++ Sbjct: 121 KVIDQMAAVLILQ------SYLEATR 140 >gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii FI9785] gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii FI9785] Length = 143 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 17/140 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130 P NM+GS G V ++ + + K +P + DERLTTV A +IL++ V RK Sbjct: 62 PKNMDGSSGHSVERSKQY-GGRLKEKFDLPVYYVDERLTTVQADRILVEEAGVHDRVERK 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 K I D +AA LILQ L+ Sbjct: 121 KVI---DQMAAVLILQNYLE 137 >gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245] gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245] Length = 142 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 SL + I +ID GTKRIG A SDP + FA P + R ++ + +L E I Sbjct: 2 SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRAELFE---KLEQMARNEEIDKI 58 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G PLN +G++ F+ + +P DE ++ A QIL +SRK+ Sbjct: 59 LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118 Query: 132 RIQK--VDSIAAALILQEVLD 150 R +K +D AA +IL+E LD Sbjct: 119 RNRKGRLDCAAACVILREYLD 139 >gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE] gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE] Length = 154 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 61/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVGLPRSLG 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + VP DER++TV+A Q L V+ KK +D A Sbjct: 68 GGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRSVIDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 128 AVVILQNALE 137 >gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7] gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19] gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3] gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19] gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3] Length = 140 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GLP Sbjct: 4 IIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + AFV ++ +P ++DER T+V A + +++ + +KKR K V Sbjct: 61 MNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDKGLV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ ++LES K Sbjct: 121 DEISAVIILQ------AYLESKK 137 >gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 148 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 5/139 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 LK I +ID GTKR G+A++D + A L + T+ L + +E++ I Sbjct: 10 LKAQMRILAIDYGTKRCGIAVTDELKLIASA---LATVETTELLDFLQQYCQSESVERII 66 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP +G + +F+ + ++ +P +DER T+ A IL++ +KKR Sbjct: 67 IGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKKR 126 Query: 133 IQK--VDSIAAALILQEVL 149 K +D I+A LILQ+ L Sbjct: 127 QDKALLDRISATLILQDYL 145 >gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC 6506] gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC 6506] Length = 170 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A + R + + +T + + GLP NMN Sbjct: 11 GLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQVLVSGLPYNMN 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G + + + + + +P + DERLT++ A+Q+++ +S + +D A Sbjct: 71 GTLGFQARQVQKYASRLAS-ALALPLEYVDERLTSIQAEQLMLTEKISPSRNKALIDRKA 129 Query: 141 AALILQEVLD 150 AA+ILQ+ LD Sbjct: 130 AAIILQQWLD 139 >gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] Length = 143 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 17/146 (11%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 +D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133 P NM+GS G V ++ + + + K +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159 + +D +AA LILQ S+LE+++ Sbjct: 121 KVIDQMAAVLILQ------SYLEATR 140 >gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum IMS101] gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101] Length = 149 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KR+G+A D A + R + +L + + I+GLP +MN Sbjct: 10 GLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSMN 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + + + + + +P + DERLT+V A+++L N+S + +D A Sbjct: 70 GSIGFQAKKVQRYAQRL-SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRKA 128 Query: 141 AALILQEVLD 150 AALILQ+ LD Sbjct: 129 AALILQQWLD 138 >gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii M21/2] gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii M21/2] Length = 143 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74 I ++D G R GLA D P+ L R KV E+ I E I +IG Sbjct: 3 ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMI---LIG 59 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+EG R +R ++ +P WDER TT +A +L + +R + Sbjct: 60 LPLNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKE 118 Query: 135 KVDSIAAALILQEVL 149 +DS++A +IL++ L Sbjct: 119 ILDSVSATVILEDYL 133 >gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 138 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 18/144 (12%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77 I +D+G++RIG+AISDP + A P F V + L I E+ I +IG P+ Sbjct: 3 ILCLDIGSRRIGVAISDPLKIAAQP--FCVLDLQKEDLYSCLDKIFNEHQIEKIVIGYPV 60 Query: 78 NMNGSEGPRVHSTRAF--------VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 + + H +A + + ++R+ V + WDER +T + ++IL + NVS Sbjct: 61 S-------KFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSW 113 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 +KR + VD +AA ILQ LD I+ Sbjct: 114 QKRKKVVDKLAAVYILQGYLDFIN 137 >gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN] gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN] Length = 139 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D G KR GLA++DP + A+ LV ++ L ++ EN+ ++G P Sbjct: 4 ILSVDYGKKRTGLAVTDPLQIIANG---LVTVATSELFDFLKDYVQRENVECIVVGRPTQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 +NG + FV+ +P ++DER T+ AQQ ++ V +K R + Sbjct: 61 LNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRREDKGL 120 Query: 136 VDSIAAALILQEVL 149 VD ++A +ILQ+ + Sbjct: 121 VDEVSATIILQDYM 134 >gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469] gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469] Length = 140 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIG+A+SDP A P L ++V A + + + G P Sbjct: 3 VLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRPKT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G +GP+ I + +P F DERL++ A++IL +S K KVD Sbjct: 63 LAGEDGPQAQKITVQAEQ-IAKNCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKVDM 121 Query: 139 IAAALILQEVLD 150 +AA+L LQ LD Sbjct: 122 VAASLFLQSWLD 133 >gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J] gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448] Length = 130 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 9/136 (6%) Query: 27 KRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNMNGSEG 84 K G AISD + ++P F + + + ++F E I+ ++G PL + G Sbjct: 2 KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 PR F +++ + + VF DERLTT AQ L+D+ +S KKR + +D +AA +I Sbjct: 62 PRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120 Query: 145 LQEVLDRISFLESSKG 160 L+ FL + KG Sbjct: 121 LER------FLNTKKG 130 >gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium prausnitzii SL3/3] Length = 143 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74 I ++D G R GLA D P+ L R KV E+ I E I +IG Sbjct: 3 ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMI---LIG 59 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+EG R +R ++ +P WDER TT +A +L + +R + Sbjct: 60 LPLNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKE 118 Query: 135 KVDSIAAALILQEVL 149 +DS++A +IL++ L Sbjct: 119 ILDSVSATVILEDYL 133 >gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205] gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205] Length = 153 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74 +D+G R+G+A SDP A P L R + V EL + + ++G Sbjct: 11 GVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEAVEVVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+N+ G GP + +V +++ VP DER++TV A + L + V +++ Sbjct: 71 LPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQRA 130 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 131 VVDQAAAVEILQSWLD 146 >gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus S26/3] gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3] Length = 150 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79 +D G +RIGLA + + P F+ K + +LL I E ++ ++G PL M Sbjct: 12 GVDYGERRIGLAYAAYPLGISLPIGFIATGKTLEATAKLLVGIIQERRVSTVVLGNPLPM 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138 + + + +++ V + WDERL++ A+++L D +SRKKR K DS Sbjct: 72 QKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDS 131 Query: 139 IAAALILQEVLDRISFLESS 158 IAA LIL SFLE S Sbjct: 132 IAATLIL------TSFLEHS 145 >gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase Length = 171 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 17/151 (11%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75 +D+GT RIGLA+SD G R A P L R K + ++ ++ + +N I ++GL Sbjct: 20 GVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHIVEVVVGL 79 Query: 76 P--LNMNGSEGPRVHSTRAFVHNMIDRKVY------VPFVFWDERLTTVSAQQILIDMNV 127 P L NGS+ + AF I R+++ V DERLTTV A Q L V Sbjct: 80 PRDLKGNGSKSVKHAKDVAF---RIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGV 136 Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157 S KK + VD AA ILQ LD RI+ LE+ Sbjct: 137 SEKKGRRVVDQAAAVEILQSWLDARINVLEN 167 >gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120] gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC 29413] gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120] gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413] Length = 151 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KR+G+A D A + R + ++ + + + ++GLP +M+ Sbjct: 9 GLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSMD 68 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + F + + + +P + DERLT+ A+Q+LI NVS + +D A Sbjct: 69 GSLGFQARQVQKFTSRLA-KALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRKA 127 Query: 141 AALILQEVLD 150 AALILQ+ LD Sbjct: 128 AALILQQWLD 137 >gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis YCH46] gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC 9343] gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46] gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC 9343] gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R] Length = 138 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 13/138 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL FIT E++ IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTMQIIANGL-------TTVPTHELLDFITNYVKQESVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLD 150 K VD I+A +ILQ L+ Sbjct: 117 KALVDEISATIILQSYLE 134 >gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074] gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 158 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + + ++GLP ++ Sbjct: 12 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEPIEVVVGLPRSLK 71 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F + VP DER++TV+A Q + V KK +D A Sbjct: 72 GGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVRSKKGRAVIDQAA 131 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 132 AVVILQSALE 141 >gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium diphtheriae NCTC 13129] gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 183 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 17/151 (11%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75 +D+GT RIGLA+SD G R A P L R K + ++ ++ + +N I ++GL Sbjct: 32 GVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHIVEVVVGL 91 Query: 76 P--LNMNGSEGPRVHSTRAFVHNMIDRKVY------VPFVFWDERLTTVSAQQILIDMNV 127 P L NGS+ + AF I R+++ V DERLTTV A Q L V Sbjct: 92 PRDLKGNGSKSVKHAKDVAF---RIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGV 148 Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157 S KK + VD AA ILQ LD RI+ LE+ Sbjct: 149 SEKKGRRVVDQAAAVEILQSWLDARINVLEN 179 >gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205] gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205] Length = 137 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 14/138 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 I SID G KR GLA++DP + A+ T + EL ++I T E + +IG Sbjct: 3 ILSIDYGKKRTGLAVTDPLQIIAN-------GLATVSTHELFTYIETYIQKEQVERIVIG 55 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P+ NG + F + +P ++DER T+V A + +ID V +K R + Sbjct: 56 KPMQPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKE 115 Query: 135 K---VDSIAAALILQEVL 149 VD I+A +ILQ+ L Sbjct: 116 NKGLVDEISATIILQDYL 133 >gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1] gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1] Length = 142 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 11/141 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +D+G+K IGLA S G + + + LL+ FI ++ F+ G P Sbjct: 4 ILGLDVGSKTIGLA-SSTGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVFGYPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP------FVFWDERLTTVSAQQILIDMNVSRKK 131 NMNGS G R F+ + VY P + DER TT A+ I+I+ +SR+K Sbjct: 63 NMNGSIGERAEMVDYFIEGFM---VYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQK 119 Query: 132 RIQKVDSIAAALILQEVLDRI 152 + + D++AA LIL+ L++I Sbjct: 120 QKENKDTLAAQLILETYLEKI 140 >gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM 5692] gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM 5692] Length = 142 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 ID G KR+GLA+SD P + R T+ AL ELL++I T I A +IGLP + Sbjct: 5 GIDFGLKRVGLALSDSQATVVTPLATVQRS--TRQALFEELLAYIETYAIEAVVIGLPYD 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G+ R F ++ R++ +P + DE LT+ A + L + V R KR +D Sbjct: 63 LEGTATLTTRQARNFGTSLA-RRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLDQ 121 Query: 139 IAAALILQEVL 149 AA IL+ L Sbjct: 122 HAAVAILESFL 132 >gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT 11841] gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT 11841] Length = 141 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID G KR G+A++DP + A+ + V ++S++ E++ ++G P Sbjct: 4 VLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVQQEHVERIVVGQPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K V Sbjct: 61 ANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNKALV 120 Query: 137 DSIAAALILQ 146 D I+A +ILQ Sbjct: 121 DEISATIILQ 130 >gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec] gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec] Length = 188 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLP 76 +D+G+ R+G+A+SDP A P L R+ V++ EL + + ++GLP Sbjct: 33 GVDVGSVRVGVAVSDPDGLLAVPVTTL-RRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +++G EG V R + + R VP DERLTTV A + + + + + R V Sbjct: 92 RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151 Query: 137 DSIAAALILQEVLD 150 D AA ILQ LD Sbjct: 152 DQEAAVQILQHHLD 165 >gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 136 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID GTKR GLA++DP + A L Q L + E + AF+IGLP Sbjct: 3 ILSIDYGTKRTGLAVTDPLKLIASG---LTTVDTPQLLPFLEKYTAEEAVEAFVIGLPKR 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 +N + + + + +R + +DER T+ A Q +ID + +K+R K + Sbjct: 60 LNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKALI 119 Query: 137 DSIAAALILQEVLD 150 D I+A LILQ+ L+ Sbjct: 120 DEISATLILQDFLN 133 >gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ] gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ] Length = 147 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 +ID G R+GLA++DP R P L + T+ AL ELL+ I+ + + ++G P+ Sbjct: 6 AIDYGQARVGLAVTDPEARVVFPLRTLAWE--TRDALFHELLAVISDQAVTRIVVGYPMR 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G EG R FV + R+ VP DE +T A + L + + K+ + +VD+ Sbjct: 64 AGGDEGLTGRQVRNFVSRLT-RRTTVPVELVDEAHSTEEAAERLREAGYAGKELLARVDA 122 Query: 139 IAAALILQEVL 149 AAA+IL+ L Sbjct: 123 QAAAVILERYL 133 >gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL 2338] Length = 158 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 ID+G R+G+A+SDP A P L R L L+ + + ++G+P + Sbjct: 17 GIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTL 76 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+ VD Sbjct: 77 AGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQA 136 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 137 AAVEILQAWLD 147 >gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492] gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36] gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492] gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36] Length = 141 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 7/141 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++GLP Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + FV ++ + +P + DER T+V A + +++ + +K R K V Sbjct: 61 MNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLD--RISFL 155 D I+A +ILQ L+ R SFL Sbjct: 121 DEISATIILQTYLENKRFSFL 141 >gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32] gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei U32] Length = 133 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNMNGSEGPRVHS 89 +A+SDP A P L R T L+ L+ + TE+ + I+GLP + +GP Sbjct: 1 MALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAEL 60 Query: 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 A+ + R VP DERLTTV+A +IL V +K+ VD AA ILQ + Sbjct: 61 AIAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWI 120 Query: 150 DRISFLESSKG 160 D + + +G Sbjct: 121 DAAAAHRAREG 131 >gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 199 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VT 53 M +L E+L + L K + +D+G+K +GLA+SD R A P L R K + Sbjct: 13 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72 Query: 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111 A + + + ++A ++G P N+ G P V + + + +WDE Sbjct: 73 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132 Query: 112 RLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153 T+ + +L +N++ + + + D AA ILQ LD ++ Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175 >gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana] Length = 548 Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL-N 78 +D+G K +GLAISDP A P L+RKK + A + + + +++ ++G P Sbjct: 405 LDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPFGK 464 Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +N E V + F+ + ++ V + +WDERL++ + + +L +N+ + + Sbjct: 465 LNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTML 522 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQE LD Sbjct: 523 DKLAAVVILQEYLD 536 >gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD] gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD] Length = 124 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 12/105 (11%) Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-----------YVPF 106 E+L I N+ +IGLPL ++G+EG + N+I R Y+P Sbjct: 13 EVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPE 72 Query: 107 VFW-DERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 V W DERLTTVSA + L+ ++S KK VD +A LILQ LD Sbjct: 73 VVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALD 117 >gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp. lyrata] gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp. lyrata] Length = 542 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL-N 78 +D+G K +GLAISDP A P L+RKK + A + + + +++ ++G P Sbjct: 399 LDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVGYPFGK 458 Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +N E V + F+ + ++ V + +WDERL++ + + +L +N+ + + Sbjct: 459 LNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTML 516 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQE LD Sbjct: 517 DKLAAVVILQEYLD 530 >gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855] gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855] gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 139 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++D + A+ L Q +L ++ E + I+G P Sbjct: 4 ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K V Sbjct: 61 MNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES K Sbjct: 121 DEISATIILQ------SYLESKK 137 >gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5] gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5] Length = 131 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D GTKR+GLAI D + P+ + K+ + E+ + + I+GLPL Sbjct: 3 VLAVDYGTKRVGLAIGDEELKIVSPKGTVSSKEAVKKIKEI---VEKSRVGKVIVGLPLT 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EG R + FV + + + WDER TT A + L + KK+ + D Sbjct: 60 PSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELKDV 117 Query: 139 IAAALILQEVLDRI 152 I+A +IL+E L+ + Sbjct: 118 ISAMIILEEYLNSV 131 >gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f] gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f] Length = 200 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77 +D+G+ R+G+A SDP A P L R + + EL + + ++GLP Sbjct: 45 GVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVVGLPR 104 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G EG V R + + R VP DERLTTV A + + + + + R + VD Sbjct: 105 QLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRELVD 164 Query: 138 SIAAALILQEVLD 150 AA ILQ LD Sbjct: 165 QEAAVQILQHHLD 177 >gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 187 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VT 53 M +L E+L + L K + +D+G+K +GLA+SD R A P L R K + Sbjct: 1 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60 Query: 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111 A + + + ++A ++G P N+ G P V + + + +WDE Sbjct: 61 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120 Query: 112 RLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153 T+ + +L +N++ + + + D AA ILQ LD ++ Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163 >gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens XB1A] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T + ELL+FI E + IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIANGL-------TTVSTHELLNFIGEYMAKEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM 15272] gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM 15272] Length = 149 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D+G RIG+A+ DP A P + LL + + ++GLPL+++G Sbjct: 1 MDVGDVRIGVAMCDPDGMIATPVETVPAGPAAHA--RLLQIASEIEVVEIVVGLPLSLSG 58 Query: 82 SEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 EGP RAFV M DR P DERL+TV+A L D + + + +D Sbjct: 59 REGPAAGKVRAFVQVLAAMSDR----PVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQ 114 Query: 139 IAAALILQEVLD 150 AA +ILQ LD Sbjct: 115 AAAVVILQNALD 126 >gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946] gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946] Length = 135 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +A++D+G RIGLA+ + G +A R +LVR+ L L +F E +A I+GLPL Sbjct: 3 VAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ P + R R+ + DER TT Q L + ++ K+D Sbjct: 63 TDGT--PSAQAARVLELVRALREAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKLDE 120 Query: 139 IAAALILQEVLDR 151 AA +L+ L+R Sbjct: 121 AAAVALLESYLER 133 >gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 161 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ++D+G RIGLA SDP A P + R + + + TE + A ++GLPL + Sbjct: 8 AVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLAL 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G F + D +P DERL+TVSAQ L +K+ +D + Sbjct: 68 SGRATASTDDAEGFARRLAD-ATEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQV 126 Query: 140 AAALILQEVLD 150 AA +ILQ L+ Sbjct: 127 AAVIILQHALE 137 >gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium prausnitzii L2-6] Length = 143 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLV---RKKVTQTALELLSFITTENIAAFIIG 74 I ++D G R GLA D P P + R KV E+ I E I +IG Sbjct: 3 ILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELI---VIG 59 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+EG R +R ++ +P WDER TT +A +L + KR Sbjct: 60 LPLNMDGTEGERARKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKS 118 Query: 135 KVDSIAAALILQEVL 149 +DS++A +IL + + Sbjct: 119 ILDSVSATVILDDYI 133 >gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group] gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group] gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group] gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group] Length = 178 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +D+G+K +GLA+SD R A P L R K ++ A + ++ ++ ++A F++G P N Sbjct: 26 GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G P R V + + + +WDE T+ + +L + + + + Sbjct: 86 LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKCVEALLHPLKLHDPVETKTM 145 Query: 137 -DSIAAALILQEVLDRIS 153 D AA ILQ LD ++ Sbjct: 146 TDKFAAVCILQRYLDNMN 163 >gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279] gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279] Length = 136 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA+ + G +A R +LVRK + L +F E F++GLPL Sbjct: 3 VVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G + +A V M +R + + + DER TT Q L ++ K+D Sbjct: 63 TDGRPSAQAERVQALVEAMRERGMQLELL--DERYTTKLGQNRLKHAPKRIRQEKGKLDE 120 Query: 139 IAAALILQEVLDRIS 153 AA +L+ L R+ Sbjct: 121 AAAIALLESYLARVG 135 >gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase [Arabidopsis thaliana] gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana] gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein [Arabidopsis thaliana] Length = 170 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +D+G K +GLAISDP A P L+RKK + A + + + +++ ++G P Sbjct: 26 GLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPFG 85 Query: 79 -MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +N E V + F+ + ++ V + +WDERL++ + + +L +N+ + Sbjct: 86 KLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTM 143 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQE LD Sbjct: 144 LDKLAAVVILQEYLD 158 >gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii ATCC 33406] gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC 33406] Length = 152 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 19/142 (13%) Query: 19 IASIDLGTKRIGLAISDPGRRFA------HPRPFLVRKKVTQTALELLSFITTENIAAFI 72 I + D GTKRIG+A +DP + A HP+ +V L ++ TE + AF+ Sbjct: 4 ILAFDFGTKRIGIASTDPMQIIANALDTVHPKDVVVY---------LKKYLNTEPVEAFV 54 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLP + E + +AF+ N+I + P DER T+ A ++ VS+K Sbjct: 55 VGLPRTLQNEESSNAANVKAFI-NLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKG 113 Query: 132 RIQK--VDSIAAALILQEVLDR 151 R K +D I+A +ILQ +++ Sbjct: 114 RRDKATIDKISATIILQSFMEQ 135 >gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 139 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++D + A+ L Q +L ++ E + I+G P Sbjct: 4 ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K V Sbjct: 61 MNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES K Sbjct: 121 DEISATIILQ------SYLESKK 137 >gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M] gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M] Length = 151 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74 N +DLG K +G+A+S G + + F K + L I I ++G Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLG 65 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q Sbjct: 66 YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQ 125 Query: 135 KVDSIAAALILQEVLDRISF 154 D IAA +ILQ LD I Sbjct: 126 MKDEIAATIILQNYLDYIKL 145 >gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011] gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011] Length = 139 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 13/138 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT----TENIAAFIIG 74 I +ID G KR G+A++DP + A+ T +L+ F+T E++ IIG Sbjct: 4 ILAIDYGRKRTGIAVTDPMQIIANGL-------TTVRTHDLMDFLTDYTQKESVEKIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP M+ + + FV N + +P + DER T+V AQ+ +I+ + +K R Sbjct: 57 LPKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLD 150 K VD ++A +ILQ L+ Sbjct: 117 KALVDEVSATIILQTYLE 134 >gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a] gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b] gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a] gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b] Length = 141 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 13/148 (8%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENI 68 + P I +ID G KR G+A+SD + A+ T ELL+FI E + Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYMAKEPV 53 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 IIGLP MN + + FV ++ R +P + DER T+V A + +++ + Sbjct: 54 ERIIIGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLK 113 Query: 129 RKKRIQK--VDSIAAALILQEVLDRISF 154 +K R K VD I+A +ILQ L+ F Sbjct: 114 KKDRQNKALVDEISATIILQTYLESKRF 141 >gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae GPIC] gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae GPIC] Length = 163 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G +RIGLA + + P + V TA L + I +++ ++G P+ M Sbjct: 14 GIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVVLGNPIPM 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138 + + + ++I V + WDERL++ A+++L D +SRKKR K D+ Sbjct: 74 QKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDT 133 Query: 139 IAAALILQEVLDRISFLESS 158 IAA LIL SFLESS Sbjct: 134 IAATLIL------TSFLESS 147 >gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC 8482] gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510] gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A] gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482] gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510] gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A] Length = 139 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++D + A+ L Q +L ++ E + I+G P Sbjct: 4 ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K V Sbjct: 61 MNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES K Sbjct: 121 DEISATIILQ------SYLESKK 137 >gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973] gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973] Length = 140 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 I SID G KR GLA++DP + + T EL F+ T E + +IG Sbjct: 6 ILSIDYGKKRTGLAVTDPLQ-------MICGGLATVPTSELFKFLQTYMEKEPVERIVIG 58 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NG + + FV+ +VP F+DER T++ A + ++D + +K R Sbjct: 59 EPKQPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRD 118 Query: 135 K--VDSIAAALILQEVLDRI 152 K VD I+A +ILQ L+ I Sbjct: 119 KALVDEISATIILQSYLESI 138 >gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM 18228] gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM 18228] Length = 142 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++DP + A+ L Q LL ++T E++ I+G P Sbjct: 4 IIAIDYGRKRTGIAVTDPMQIIANG---LTTVPTHQLMDFLLKYVTQESVERIIVGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + + F++ + + +P DER T+V A Q ++ + +K R K V Sbjct: 61 MNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLD 150 D I+A +ILQ L+ Sbjct: 121 DEISATIILQSYLE 134 >gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12] gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 139 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID G K +GLAISDP R A K L + + ++G P++ Sbjct: 3 VLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYPIS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G E R R + +I+ + +P F DERLTT+ A+++L++ ++ RKKR + Sbjct: 63 LRGHENERTQKVR-HIAELIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLKNK 121 Query: 139 IAAALILQEVLDRISF 154 AA +ILQ+ LD S Sbjct: 122 QAAVIILQKYLDSSSL 137 >gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp. SA3_actG] gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp. SA3_actF] Length = 154 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V + + + ++GLP ++ Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG RAF + VP DER+TTV+A Q L V+ KK +D A Sbjct: 68 GGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 128 AVIILQTALE 137 >gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM 17565] gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM 17565] Length = 141 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAA 70 P I +ID G KR G+A+SD + A+ T ELL+FI E + Sbjct: 3 PMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGDYIAKEPVER 55 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 IIGLP MN + + FV ++ R +P + DER T+V A + +++ + +K Sbjct: 56 IIIGLPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKK 115 Query: 131 KRIQK--VDSIAAALILQEVLDRISF 154 R K VD I+A +ILQ L+ F Sbjct: 116 DRQNKALVDEISATIILQTYLESKRF 141 >gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 161 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D G RIG+A SDP A P + R K + LL + ++G P +++ Sbjct: 8 AVDPGNARIGVAASDPSGMLASPVETIRRGKGDTQRIALL--VLERQAREVVVGYPASLS 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRK------KRI 133 G EGP S R F + VP DERLTTV+AQ Q+L + + K R Sbjct: 66 GEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAKGGRARR 125 Query: 134 QKVDSIAAALILQEVLDR 151 +D AA ++LQ LD+ Sbjct: 126 SVIDQAAATVLLQSALDQ 143 >gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010] gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010] Length = 139 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++DP R A+ L ++ L+++I +E + +IG P+ Sbjct: 4 ILAIDYGKKRTGIAVTDPLRIIANG---LATVPTSELYDYLVAYIRSEAVDKIVIGKPIQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 NG F + + +P F+DER T+V A Q +I V +K R + Sbjct: 61 ANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRREDKGL 120 Query: 136 VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 121 VDEISATIILQDFM 134 >gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae bacterium DG1235] gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae bacterium DG1235] Length = 149 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G +R+G+A D G A P +V+ + L+ F+ G P NM Sbjct: 5 GVDYGERRVGVAFGDDIG--VATPLQAIVKATEEERIQALVDLARERRATDFVFGYPYNM 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NGS G + AF+ ++ + + +P DERLT+V A + +R K+DS+ Sbjct: 63 NGSVGFKAKEVDAFIDKLL-KAIDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKIDSV 121 Query: 140 AAALILQEVLDR 151 AA+LILQ+ L++ Sbjct: 122 AASLILQDYLNQ 133 >gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC 73102] gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102] Length = 158 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP +D G KRIG+A D A + R Q ++ + + ++ Sbjct: 8 KPFISALGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVM 67 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +M+GS G + + F + + + +P + DERLT+ A+Q+LI N S + Sbjct: 68 GLPYSMDGSIGFQARQVQKFTTRL-SKALKLPVEYVDERLTSFQAEQLLIAENRSPSRHK 126 Query: 134 QKVDSIAAALILQEVLD 150 +D AAALILQ+ LD Sbjct: 127 GLIDRKAAALILQQWLD 143 >gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W] Length = 151 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74 N +DLG K +G+A+S G + F K + L I+ I ++G Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLG 65 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G + + F + ++ V + WDERL+TV A Q+L N + + +Q Sbjct: 66 YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQ 125 Query: 135 KVDSIAAALILQEVLDRISF 154 D IAA +ILQ LD I Sbjct: 126 MKDEIAATIILQNYLDYIKL 145 >gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 143 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D+G K +G+A+SDP A P L R A ++ + + A +IGLP Sbjct: 5 VIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLPRL 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--QKV 136 +NG G + + F + VP +F DER +T SA+ I+ RK ++ Sbjct: 65 LNGVVGTQAERVQYFARRLAS-LTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRERD 123 Query: 137 DSIAAALILQEVLD 150 D++AAA+ILQ+ LD Sbjct: 124 DAVAAAVILQDWLD 137 >gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170] gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170] Length = 139 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++DP + A L Q LL ++ E + IIG P Sbjct: 4 ILAIDYGKKRTGIAVTDPMQVIASG---LTTVPTHQLMDFLLGYVRQEAVERIIIGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + F++ + + +P +DER T+V A Q ++ + +K R K V Sbjct: 61 MNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 D I+A +ILQ S+LE+ +G Sbjct: 121 DEISATIILQ------SYLEAKRG 138 >gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1] gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1] gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT] gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1] gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT] Length = 133 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 +G K IG A+SDP R A P L R T+T + S + T IIGLP+++NG+ Sbjct: 1 MGDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTI 60 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 GP+ ++F ++ R + + ++ DER +T A++ + D + + + D+ AAA+ Sbjct: 61 GPQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117 Query: 144 ILQEVLDRIS 153 ILQ+ LD + Sbjct: 118 ILQDYLDETN 127 >gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM 45221] gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G KRIGLA +D G P V KK +E + I + ++G PLNM Sbjct: 5 GIDWGEKRIGLAFADEVGIALPLPAAVAVSKKERMRHIEQM--IQERRVRELVVGYPLNM 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + AF+ + +++ +P DERL++ S +Q L ++ ++DS Sbjct: 63 DGSVGFKAKEVDAFIEEL-EKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121 Query: 140 AAALILQEVLD 150 AAALILQ+ ++ Sbjct: 122 AAALILQDFIE 132 >gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC 7335] gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC 7335] Length = 144 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG KRIG+A D A L + + L + I ++ ++GLP M+ Sbjct: 6 GLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + + F H + + + +P F DERLT+ A+Q+L+ S + +D A Sbjct: 66 GQIGFQAKKIQKFAHRL-SKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRKA 124 Query: 141 AALILQEVLD 150 AA+ILQ+ LD Sbjct: 125 AAIILQQWLD 134 >gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1] gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1] gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL-SFITTENIAAFIIGLP 76 I ++DLG+K G AISD R + P F ++ + +E L + I +IG P Sbjct: 4 IIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLIGYP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+M ++ FV N+ +P DER TT A I+I+ +SR+KR + Sbjct: 64 LSMQLNQTKSSKRVDYFV-NLFKTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRKKNK 122 Query: 137 DSIAAALILQEVLDR 151 D +AA LIL + L++ Sbjct: 123 DKLAAQLILDDYLNQ 137 >gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5] gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5] Length = 153 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74 +D+G R+G+A DP A P L R V EL+ ++G Sbjct: 11 GVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+N+ G GP + A+ + D +P DER++TV A + L + V K++ Sbjct: 71 LPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRA 130 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 131 VVDQAAAVEILQSWLD 146 >gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC 27029] gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC 27029] Length = 153 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74 +D+G R+G+A DP A P L R V EL+ ++G Sbjct: 11 GVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+N+ G GP + A+ + D +P DER++TV A + L + V K++ Sbjct: 71 LPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRA 130 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 131 VVDQAAAVEILQSWLD 146 >gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22] gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYMAKEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135] gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++DP + A+ L + LL ++ E + ++G P Sbjct: 4 ILAIDYGRKRTGIAVTDPMQIIANG---LTTVPTHELMDFLLKYVAQEKVERIVVGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + + FV + + +P DER T+V A Q ++D + +K R K V Sbjct: 61 MNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES + Sbjct: 121 DEISATIILQ------SYLESRR 137 >gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14] gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTLQLIANGL-------TTVPTHELLNFIGEYVAKEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL 15998] gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL 11379] gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 157 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 58/130 (44%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + I+GLP ++ Sbjct: 11 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILGLPRSLG 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F VP DER+TTV+A Q + V KK +D A Sbjct: 71 GGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 130 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 131 AVVILQNALE 140 >gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 169 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLP 76 + +D+G K +GLA+SD + A P L+RKK + A + S I+ ++A FI+G P Sbjct: 24 LLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYP 83 Query: 77 LNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 N S P + + F+ ++ + V + +WDE T+ + + +L +N+ + Sbjct: 84 FNRQRSS-PTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKPLNLHPVQSKT 142 Query: 135 KVDSIAAALILQEVLDRIS 153 +D AA ILQ LD ++ Sbjct: 143 ILDKFAAVGILQGYLDHVN 161 >gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1] Length = 142 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+G R+G+A+ DP A P + R + ++ + E ++ ++GLP N+ Sbjct: 10 GVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVVLGLPRNL 69 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G +GP + R F + + + VP DER+TTV A + L V +K+ VD Sbjct: 70 RGEDGPAARAAREFA-DALQAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQRSVVDQA 128 Query: 140 AAALILQEVLDR 151 AA ILQ LD+ Sbjct: 129 AAVQILQGWLDQ 140 >gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2] gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23] gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2] gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23] gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIANGL-------TTVPTHELLNFIGEYIAKEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 141 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++G P Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGFPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + FV ++ + +P + DER T+V A + +++ + +K R K V Sbjct: 61 MNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLD--RISFL 155 D I+A +ILQ L+ R SFL Sbjct: 121 DEISATIILQTYLENKRFSFL 141 >gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides thetaiotaomicron VPI-5482] gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482] gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTLQLIAN-------GLTTVPTHELLNFIGGYVAKEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483] gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + IIG Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYIAKEPVERIIIG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_33] gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_33] Length = 147 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 ++D+G RIG+A SD A P + RKKV +++ ++ I EN I+ G+P ++ Sbjct: 6 ALDIGDVRIGVAKSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136 +G E + R ++ + + + DER +TV A IL ++N + K+++ V Sbjct: 64 DGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121 Query: 137 DSIAAALILQEVLD--RISFLESSK 159 D +AA++ILQ LD ++ FLE K Sbjct: 122 DKVAASIILQTYLDMKKLKFLEEGK 146 >gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2] gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2] Length = 140 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G R G+A+SD R A P L +V A + + G PL + Sbjct: 5 AIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTLA 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G GP+ RA I +P F DER+++ A++IL + + ++ K+D IA Sbjct: 65 GELGPQAERIRAEAEA-IGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMIA 123 Query: 141 AALILQEVLDR 151 A+L LQ LDR Sbjct: 124 ASLFLQTWLDR 134 >gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145] gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145] Length = 135 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 13/137 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ------TALELLSFITTENIAAFI 72 + D GTK IG+A+ G+ L K T +LL E + + Sbjct: 3 VVGFDFGTKSIGVAV---GQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERV---V 56 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+G+E P + F N I + VP VF DERLT+ +A++ L + + R Sbjct: 57 VGLPLNMDGTEQPLTQRAKKF-GNRIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLE 115 Query: 133 IQKVDSIAAALILQEVL 149 KVDS AA LI+++ L Sbjct: 116 KGKVDSAAALLIVEDYL 132 >gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf. prausnitzii KLE1255] gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf. prausnitzii KLE1255] Length = 191 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74 I ++D G R GLA D P+ L R KV E+ I E I +IG Sbjct: 51 ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIGAELI---VIG 107 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+EG R +R ++ +P WDER TT +A IL + KR + Sbjct: 108 LPLNMDGTEGERAIKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADILDESGTFGTKRKE 166 Query: 135 KVDSIAAALILQEVL 149 +DS++A +IL + L Sbjct: 167 ILDSVSATVILDDYL 181 >gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23] gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23] Length = 137 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G KR GLA++DP + A L ++ L ++I E + +IG P Sbjct: 4 ILSIDYGKKRTGLAVTDPLQIIAGG---LATVATSELFDFLKAYIAREQVEMIVIGEPRQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG + + FV+ VP ++DER T+V A Q ++D + +K R K V Sbjct: 61 PNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNKGLV 120 Query: 137 DSIAAALILQEVL 149 D I+A +IL++ + Sbjct: 121 DEISATIILEDFM 133 >gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus XylebKG-1] gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus XylebKG-1] Length = 154 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 58/130 (44%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 8 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLGLPRSLG 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F VP DER+TTV+A Q + V KK +D A Sbjct: 68 GGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 127 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 128 AVVILQNALE 137 >gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 145 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 1/128 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GTK IG+AI A P K T +++ ++ ++G PLN Sbjct: 6 IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P S R F H + R+ + VF DERL+T A+ L D + VD+ Sbjct: 66 MDGTEQPITESARQFGHALY-RRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124 Query: 139 IAAALILQ 146 +A +IL+ Sbjct: 125 TSAVIILE 132 >gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 161 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 58/130 (44%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A DP A P + + V L + ++GLP ++ Sbjct: 15 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLGLPRSLG 74 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R F VP DER+TTV+A Q + V KK +D A Sbjct: 75 GGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 134 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 135 AVVILQNALE 144 >gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1] gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1] Length = 156 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 3/147 (2%) Query: 2 SILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59 SI L + KPN + + D GT RIG+AI A P L K+ E+ Sbjct: 4 SISTGTSLDDNQKPNTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEI 63 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 + AF++GLPL+M+GSE R F + R +P+ DERL++ A+ Sbjct: 64 TRIVEEWKPDAFVVGLPLDMDGSENEMCQRARKFAKRLHGR-FNLPYHMMDERLSSYEAK 122 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQ 146 +I +R + VD +AA +IL+ Sbjct: 123 GQVIARGGNRNFKENSVDGLAAQMILE 149 >gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1] gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1] Length = 132 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR+GLAI D A P+ L +E + ++ + ++GLPL Sbjct: 3 IIAIDFGTKRVGLAIGDTDLGIAVPKGVLRNDANLLDRIE--DIVRSKGVKKVVVGLPLT 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EG R R F + R V WDER +T+ A+ L D+ R++ + +D+ Sbjct: 61 PSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRDLPPRRRREV--LDA 118 Query: 139 IAAALILQEVL 149 I+A +IL+E L Sbjct: 119 ISAQIILEEYL 129 >gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of Drosophila ananassae] gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi] gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of Drosophila ananassae] gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi] Length = 155 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L L I E Sbjct: 7 DEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKD-LGYLHRIFKE 65 Query: 67 NIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123 N A + +IG+PLN++ E + F + +I +K V DE L+T A L Sbjct: 66 NEAGSMVIGIPLNIDEQETKWCKTIIQFANKII-KKYKVNTYLQDESLSTSIATHTLKIT 124 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 +++++ K+I D I+A +ILQ LD+I+ ++ Sbjct: 125 GISITKSKKID--DKISACIILQRTLDKINTIK 155 >gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] Length = 147 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 ++D+G RIG+A SD A P + RKKV +++ ++ I EN I+ G+P ++ Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136 +G E + R ++ + + + DER +TV A IL ++N + K+++ V Sbjct: 64 DGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121 Query: 137 DSIAAALILQEVLD--RISFLESSK 159 D +AA++ILQ LD ++ FLE K Sbjct: 122 DKVAASIILQTYLDMKKLKFLEEGK 146 >gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp. MED92] gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp. MED92] Length = 158 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 2/135 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 NQ +A D GT+RIG+A A P L+ K E+ I+ A ++G+ Sbjct: 6 NQALA-FDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGI 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLN +G+ H R F N + + P DERL+T A++I S R + Sbjct: 65 PLNADGTISDMAHRARKFA-NRLHERYKTPCFLMDERLSTAEAKEIHFASGGSDNFREES 123 Query: 136 VDSIAAALILQEVLD 150 VD IAA LIL+ + Sbjct: 124 VDGIAAQLILESWFN 138 >gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093] gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093] Length = 154 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + ++D+G +RIG+A + G FA R + R+ + + + E A ++GL Sbjct: 2 SEVVLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + G + + RAF + + + VF DER T+ A Q L+ + R +R +K Sbjct: 62 PRRLRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEK 119 Query: 136 --VDSIAAALILQEVL 149 VD AA LIL+ L Sbjct: 120 GRVDEGAAVLILETYL 135 >gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310] gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310] Length = 138 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I SID G KR G+A++DP + A+ + T T + L ++ E + +IG P+ Sbjct: 3 ILSIDYGKKRTGIAVTDPLQIIANGLATVS----TSTLFDYLKDYVAREEVERIVIGKPM 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV+ +P ++DER T+V A + ++ + +K R K Sbjct: 59 QTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKAL 118 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 VD I+A +ILQ S++ES + Sbjct: 119 VDEISATIILQ------SYMESKR 136 >gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp. D11] gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D11] gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D11] Length = 147 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 8/144 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SD A P + RKKV ++A + + ++G+P +++ Sbjct: 6 ALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGIPKSLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137 G E + R ++ + + + DER +TV A IL ++N + K+++ VD Sbjct: 65 GEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--VD 122 Query: 138 SIAAALILQEVLD--RISFLESSK 159 +AA++ILQ LD ++ FLE K Sbjct: 123 KVAASIILQTYLDMKKLKFLEEGK 146 >gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM 17132] gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM 17132] Length = 140 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G R GLA++DP + A L K Q L +I E + A ++GLPL+ Sbjct: 4 ILAIDYGKVRTGLAVTDPLQIIATA---LETVKTDQLINYLERYIQNEEVDALVLGLPLS 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 + + P R+F + D+ +P F DER T+ A LI V +K R K Sbjct: 61 LRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVKGNT 120 Query: 137 DSIAAALILQEVL 149 D I+A +ILQ L Sbjct: 121 DLISAVIILQSYL 133 >gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella denticola F0289] gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289] Length = 139 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID G KR GLA++DP R A+ + T + L+ +I TE + +IG P+ Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIANGLATVA----TSGLFDFLTQYIGTETVEQLVIGRPV 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +G + FV+ +P ++DER T+V A Q +I V +K R + Sbjct: 60 QPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRRENKG 119 Query: 136 -VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 120 LVDEISATIILQDYM 134 >gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f] gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f] Length = 141 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 17/150 (11%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENI 68 + P I +ID G KR G+A+SD + A+ T ELL+FI E + Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYIAKEPV 53 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMN 126 IIGLP MN + + FV ++ +K Y +P + DER T+V A + +++ Sbjct: 54 ERIIIGLPKQMNNEVSENMKNIEPFVRSL--KKCYPDLPVEYVDERFTSVLAHRTMLEAG 111 Query: 127 VSRKKRIQK--VDSIAAALILQEVLDRISF 154 + +K R K VD I+A +ILQ L+ F Sbjct: 112 LKKKDRQNKALVDEISATIILQTYLESKRF 141 >gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria bacterium BBFL7] gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria bacterium BBFL7] Length = 139 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++DP + A L + ++ L ++ TE++ +IG P Sbjct: 4 ILAIDYGKKRTGIAVTDPMQIIASG---LTTVATHELSVFLEKYLNTEDVETIVIGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+ ++ AF + ++ + DER T+ A Q +ID +S+ KR K V Sbjct: 61 MDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNKALV 120 Query: 137 DSIAAALILQEVLDRIS 153 D IAA +ILQ +DR S Sbjct: 121 DEIAATIILQTYMDRKS 137 >gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales bacterium ALC-1] gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales bacterium ALC-1] Length = 137 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR GLA++D + A + K++ L +++ TE++ F++GLP Sbjct: 4 ILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPF---LKNYVDTESVEKFVVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+ + + F+ + ++P DER T+ A Q +ID + +K+R K + Sbjct: 61 MDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNKALI 120 Query: 137 DSIAAALILQEVL 149 D I+A LILQ L Sbjct: 121 DEISATLILQSYL 133 >gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis NRRL B-59395] gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis NRRL B-59395] Length = 142 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 66/138 (47%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++P +ID+G+ R+G+A+ DP A P + R K ++ IT + + Sbjct: 2 IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP + G EGP V + R F + V F+DERLTTV+A L V K Sbjct: 62 IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121 Query: 133 IQKVDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 122 RAVIDQAAAVAILQGWLD 139 >gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271] gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271] Length = 143 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 +ID GTKR G+A++DP + A + T T L L + E + AF+IG P M Sbjct: 5 AIDYGTKRTGIAVTDPLQIIASGLCTVE----TSTLLAFLKQYTAEEAVEAFVIGQPKRM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137 N + + F+ + +P DER T+ A Q +ID + +K+R K +D Sbjct: 61 NSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALID 120 Query: 138 SIAAALILQEVL 149 I+A +ILQE L Sbjct: 121 EISATIILQEFL 132 >gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM 44963] gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM 44963] Length = 162 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G RIG+A D A P + V + QT + I + +IGLP+++ Sbjct: 8 ALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIGLPVSL 67 Query: 80 NG---SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133 +G ++G R+ AFV + + VP FWDERL+TV A+++ + K Sbjct: 68 DGQIHAQGERI---MAFVERL-KAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTGGR 123 Query: 134 -----------QKVDSIAAALILQEVLD 150 ++D++AAA+ LQE LD Sbjct: 124 QHSQGKRRRPGHEIDALAAAVFLQEYLD 151 >gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU144] Length = 123 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L R Q L +L+ I + +I Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKR 121 >gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS 18C-A] gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS 18C-A] Length = 139 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID G KR GLA++DP R A+ + T + L+ +I TE + +IG P+ Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIANGLATVA----TSGLFDFLTQYIETETVERLVIGRPV 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +G + FV+ +P ++DER T+V A Q +I V +K R + Sbjct: 60 QPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRRENKG 119 Query: 136 -VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 120 LVDEISATIILQDYM 134 >gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa] gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa] Length = 170 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61 L +L+K+ NQ +D+G K +GLA+SDP + A P L+RKK + A + S Sbjct: 9 LFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATDFQS 68 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQ 119 I+ ++ FI+G P + P + FV ++ + V F +WDE T+ + + Sbjct: 69 LISELSLGGFIVGYPFDRQRG-APDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSKNVE 127 Query: 120 QIL--IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++ +D++ K I +D AA ILQ LD ++ Sbjct: 128 LLVKPLDLHPVHAKSI--MDKFAAVGILQGYLDYVN 161 >gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032] gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032] Length = 152 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74 +D+G RIG++ SDP A P + R++ V + +E+ + + ++G Sbjct: 11 GVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALVVEHEAVEVVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+N+ G GP +A+ + + VP DER++TV A + L + V KK+ Sbjct: 71 LPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLAERGVRGKKQRA 130 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 131 VVDQAAAVEILQSWLD 146 >gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae AR39] gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] Length = 154 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 4/143 (2%) Query: 14 KPNQPIA--SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAA 70 KP+ A ID G KRIGLA + P + K + +A L I + NI Sbjct: 6 KPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITC 65 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129 ++G PL M + + + + + V + WDERL++V A+++L D +SR Sbjct: 66 VVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSR 125 Query: 130 KKRIQKVDSIAAALILQEVLDRI 152 K R K DS+AA LIL LD + Sbjct: 126 KDRKGKTDSLAATLILTSFLDSL 148 >gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae CWL029] gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae J138] gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae TW-183] gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029] gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138] gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183] gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae LPCoLN] Length = 151 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 4/143 (2%) Query: 14 KPNQPIA--SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAA 70 KP+ A ID G KRIGLA + P + K + +A L I + NI Sbjct: 3 KPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITC 62 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129 ++G PL M + + + + + V + WDERL++V A+++L D +SR Sbjct: 63 VVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSR 122 Query: 130 KKRIQKVDSIAAALILQEVLDRI 152 K R K DS+AA LIL LD + Sbjct: 123 KDRKGKTDSLAATLILTSFLDSL 145 >gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera] Length = 224 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +D+G K +GLA+SD + A P L+RKK + A + S I+ ++A FI+G P N Sbjct: 81 GLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYPFN 140 Query: 79 MNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 S P + + F+ ++ + V + +WDE T+ + + +L +N+ + + Sbjct: 141 RQRSS-PTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKPLNLHPVQSKTIL 199 Query: 137 DSIAAALILQEVLDRIS 153 D AA ILQ LD ++ Sbjct: 200 DKFAAVGILQGYLDHVN 216 >gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931] gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931] Length = 175 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 +D+G R+G ++SDP A P L R + +L + ++ +GLP M Sbjct: 2 GVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKTM 61 Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQ 134 G E R + H + +D + W DERLTTVSA + L + VS + Sbjct: 62 RGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFKT 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + ++ G Sbjct: 122 MVDQVAAVNILQYSLDALKAGQAVAG 147 >gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium BAL38] gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium BAL38] Length = 137 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID G KR G+A++D + A F + ++TA+ L + + E + + IIG P Sbjct: 4 ILAIDYGIKRTGIAVTDEMQMIA----FGLTTIPSETAITFLKDYFSKEKVESVIIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MNG AFV + +P DER T+ A Q +ID +++K+R K Sbjct: 60 QMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKAL 119 Query: 136 VDSIAAALILQEVL 149 VD IAA +ILQ+ L Sbjct: 120 VDEIAATIILQDYL 133 >gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567] gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567] Length = 184 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 +D+G R+G ++SDP A P L R + +L + ++ +GLP M Sbjct: 11 GVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKTM 70 Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQ 134 G E R + H + +D + W DERLTTVSA + L + VS + Sbjct: 71 RGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFKT 130 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + ++ G Sbjct: 131 MVDQVAAVNILQYSLDALKAGQAVAG 156 >gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str. Hildenborough] gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4] gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4] gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1] Length = 142 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 1/129 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID G +R G+A++D G R A PR + +ELL + E AF++GLP Sbjct: 5 GIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLPG 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E R FV + R+ +P F E L++ A+ L D + ++ VD A Sbjct: 65 GEETLTTRQVRNFVERL-KRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVDQQA 123 Query: 141 AALILQEVL 149 A IL+ L Sbjct: 124 AVRILESFL 132 >gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 135 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR G+A++D + A L + T+ L + E + I+GLP Sbjct: 3 ILAIDYGTKRCGIAVTDELKLIASA---LATVETTELLDFLEKYCQAEQVERIIVGLPKQ 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 ++G + F+ + ++ +P +DER T+ A IL+ +KKR K + Sbjct: 60 VSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKALL 119 Query: 137 DSIAAALILQEVL 149 D I+A LILQ+ L Sbjct: 120 DRISATLILQDYL 132 >gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg] gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 148 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 2/143 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENI 68 + S+K + +D G KRIGLA + P + + TA L++ I + Sbjct: 1 MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127 + G PL M S V S + ++ + + WDERL++ A+++L D + Sbjct: 61 TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 SRK+R DS+AA LIL LD Sbjct: 121 SRKQRKNSSDSLAATLILSSFLD 143 >gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM 14600] gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM 14600] Length = 147 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I ++D G K +G+A +D A + RK K+ +T + I ++GL Sbjct: 10 IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+NM+ SEG R R F + + ++ + +DERL+T+ A +IL V KR + Sbjct: 70 PVNMDDSEGERAGMARDFA-DQVAQRTGIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128 Query: 136 VDSIAAALILQEVLD 150 +D ++A LIL+ L+ Sbjct: 129 LDELSAQLILERYLE 143 >gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244] gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244] Length = 147 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P Q I + D GT+++G+AI A+P P K +LL + FI Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFI 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+ SE R F + + ++ DERLTT A++ L + + Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQTNITTWMV-DERLTTREAREELEFYQSKGQAK 122 Query: 133 IQKVDSIAAALILQ 146 DS AAAL++Q Sbjct: 123 RLSADSFAAALLIQ 136 >gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287] gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287] Length = 143 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 +ID GTKR G+A++DP + A + T T L L + E + AF+IG P M Sbjct: 5 AIDYGTKRTGIAVTDPLQIIASGLCTVE----TPTLLAFLKQYTAEEAVEAFVIGQPKRM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137 N + + F+ + +P DER T+ A Q +ID + +K+R K +D Sbjct: 61 NSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALID 120 Query: 138 SIAAALILQEVL 149 I+A +ILQE L Sbjct: 121 EISATIILQEFL 132 >gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27] gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27] Length = 168 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 ++D G KRIGLA+SD A P + R+ + + E++ ++ +I GLPL+ Sbjct: 10 AVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYIFGLPLDP 69 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G E R R + R+ +P DER TT +A + + + S + R VD++ Sbjct: 70 GGDETDRSREVREVAGKLATRQ-PLPVRLVDERFTTSAALRSIREQGGSTRGRKGDVDAL 128 Query: 140 AAALILQEVL 149 AA ++L+ VL Sbjct: 129 AACVLLEGVL 138 >gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 848 str. F0332] Length = 156 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 4/129 (3%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNMNG 81 D+G RIG+A DP A P L R ++ ++ + I + A I+GLPLNM+G Sbjct: 10 DVGQVRIGVAQCDPEGILATPVETLWRG---ESDIDDAAQIVRDCEAMEVIVGLPLNMDG 66 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 +EG RA+ + + P DERL+TV+A LI + +K+ VD AA Sbjct: 67 TEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQRSIVDQAAA 126 Query: 142 ALILQEVLD 150 +IL L+ Sbjct: 127 VVILNTALE 135 >gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58] gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum E58] Length = 146 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D G KR+GLA + + P + R K + L I E +++ I+G P+ M Sbjct: 12 GVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIPM 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138 G++ + A + + + WDERL++ A+++L D +SRK+R K D+ Sbjct: 72 YGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTDT 131 Query: 139 IAAALILQEVLDRI 152 +AA LIL L+R Sbjct: 132 LAATLILSSFLERC 145 >gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal Fragment) Length = 98 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL Sbjct: 3 VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115 + E + V + R V V WDER TT Sbjct: 63 TDLKESAQAGKVLPLVEALRARGVEVE--LWDERFTT 97 >gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans Agy99] gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M] gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 170 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 62/139 (44%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+GT RIG+A SDP A P + R++ + L + + I+GLP + Sbjct: 29 GIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGLPRTLA 88 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + R +P DERLTTVSAQ+ L + V K + +D A Sbjct: 89 DRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAVIDQAA 148 Query: 141 AALILQEVLDRISFLESSK 159 A ILQ LD+ L + Sbjct: 149 AVAILQAWLDQRRTLAGGR 167 >gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319] gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319] Length = 139 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR GLA++DP R A+ L + L ++ E + +IG P+ Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIAN---GLATIPTSDIFDYLTQYVAKEPVDQLVIGKPIQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 NG + FV+ +P ++DER T+V A Q +I V +K R + Sbjct: 61 PNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKGL 120 Query: 136 VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 121 VDEISATIILQDYM 134 >gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus elongatus BP-1] gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1] Length = 151 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +DLG KRIG+A D + A + R+ +L + I+GLP Sbjct: 4 VLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPYT 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G G + + I + +P + DERLT+ A++IL S + VD Sbjct: 64 LDGQLGSQARQVQHLAEK-IGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVDQ 122 Query: 139 IAAALILQEVLD 150 IAAALILQ+ LD Sbjct: 123 IAAALILQQWLD 134 >gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110] gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110] Length = 143 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A + R+ Q +L + +T +IGLP +M+ Sbjct: 8 GLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVIGLPYSMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + F I + + +P + DERLT+V A+ L + VD +A Sbjct: 68 GSIGFQAKQVQKFAKR-ISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNKGLVDRLA 126 Query: 141 AALILQEVLDR 151 A +ILQ+ LD+ Sbjct: 127 ATIILQQWLDQ 137 >gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis] gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC 23114] Length = 144 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 15/146 (10%) Query: 19 IASIDLGTKRIGLAISDPGR---------RFAHPRPFLVRKKVTQTALELLSFITTE-NI 68 I ++DLGTK G AISDP RF LV +KV L L+ + +I Sbjct: 3 ILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKV----LHYLNKSEYQGSI 58 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++G PL M+ S+ R + F + + V +P VF DER +T+ AQ+IL + Sbjct: 59 GTIVLGYPLRMDLSKSQRTYMVERFGERL-KKVVDIPVVFQDERQSTIGAQEILQSAGWN 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154 KK K DS+AA LIL++ L I + Sbjct: 118 TKKSKSKKDSLAAQLILEDYLKGIKY 143 >gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3] gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3] Length = 140 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75 Q I +ID GTKRIG+A SDP FA P + R +++ LLS + + ++G Sbjct: 5 QRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSK----LLSPMVEAGEVQLVVVGY 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLN +G + F+ ++ +P +E ++ SA Q+L+ SRK+R K Sbjct: 61 PLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKERKTK 120 Query: 136 --VDSIAAALILQEVLDR 151 +D+ AA L+L + L++ Sbjct: 121 GRLDTAAACLLLSDYLEQ 138 >gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides distasonis ATCC 8503] gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503] Length = 140 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GL Sbjct: 4 IIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGLRKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + AFV ++ +P ++DER T+V A + +++ + +KKR K V Sbjct: 61 MNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDKGLV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ ++LES K Sbjct: 121 DEISAVIILQ------AYLESKK 137 >gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans Sphe3] gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter phenanthrenivorans Sphe3] Length = 199 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+GT R+G+AI D A P L R + + +++ + E I+GLP M Sbjct: 17 GVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIVGLPRTM 76 Query: 80 NGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 G E R + + R + VP DERL++V+A + L + +S + + Sbjct: 77 KGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSSRNHRKV 136 Query: 136 VDSIAAALILQEVLD 150 VD +AAA ILQ +D Sbjct: 137 VDQVAAAGILQHAID 151 >gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] Length = 178 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 +D+G R+G A+SDP A P L R + +L I + +GLP M Sbjct: 2 GVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKTM 61 Query: 80 NGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 G + P R + + + K ++ DERLTTVSA + L + VS + Sbjct: 62 RGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFKT 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + +S G Sbjct: 122 MVDQVAAVNILQYSLDALKAGQSVAG 147 >gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi 35000HP] gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 138 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 31/147 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GT IG A+ + +T+TA L +F + + I + Sbjct: 5 ILAFDFGTYSIGCAVG---------------QSITKTAQSLTAFKSQDGIPNWQHIEKII 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+GSE P R F N ++ + +P DERLTT A+ + Sbjct: 50 KEWQPDLLVVGLPLNMDGSEQPLTQRARKFA-NRLNGRFNLPVALQDERLTTTEAKSEIF 108 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 + + K+D+I+A LIL+ D Sbjct: 109 SRGGYKALKKDKIDTISACLILESWFD 135 >gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317] Length = 124 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 + +D+G+K +G+A+SDP F + ++ + E L + + F++ Sbjct: 3 VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132 GLP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR Sbjct: 60 GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118 >gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM 44728] gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM 44728] Length = 151 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75 +D+G R+G+A+SDP A P + R K V + ++ + E+ + +IGL Sbjct: 12 GVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSVVEIVIGL 71 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ ++G E +RA+ + VP F DERLTT A + L + V K+R Sbjct: 72 PVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSERGVKGKRRKAV 131 Query: 136 VDSIAAALILQEVLDR 151 VD AA ILQ L++ Sbjct: 132 VDQAAAVEILQLWLEK 147 >gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 155 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 7/153 (4%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L L I E Sbjct: 7 DEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKD-LGYLHRIFKE 65 Query: 67 N-IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123 N + +IGLPL M+ E + F + +I +K V DE +T A L Sbjct: 66 NESGSMVIGLPLKMDEQETKWCKTIIQFANKII-KKYKVNIYLQDESFSTSIATHTLKIT 124 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 +++++ K+I D I+A +ILQ LD+I+ ++ Sbjct: 125 GISITKSKKID--DKISACIILQRTLDKINTIK 155 >gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35239] gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35239] Length = 153 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G R+G+A + A P L + EL SFI E A +GLP +N Sbjct: 8 GVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLN 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R++ + + +P DERL++V+A + L VS ++ + VD +A Sbjct: 68 GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127 Query: 141 AALILQEVLD 150 A IL++ L+ Sbjct: 128 AQQILEQALE 137 >gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae L20] gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 137 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT IG A+ A P + ++ I ++GLPLN Sbjct: 5 ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSE P + F N ++ + +P DERLTTVSA+ + + + + KVDS Sbjct: 65 MDGSEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123 Query: 139 IAAALILQEVLD 150 I+A LIL+ + Sbjct: 124 ISACLILESWFE 135 >gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia mucilaginosa DY-18] gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia mucilaginosa DY-18] Length = 187 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 +D+G R+G A+SDP A P L R + +L I + +GLP M Sbjct: 11 GVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKTM 70 Query: 80 NGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 G + P R + + + K ++ DERLTTVSA + L + VS + Sbjct: 71 RGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFKT 130 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + +S G Sbjct: 131 MVDQVAAVNILQYSLDALKAGQSVAG 156 >gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1] gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1] Length = 137 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I SID G KR G+A++D + A+ + T + L +++ E + +IG P+ Sbjct: 3 ILSIDYGKKRTGIAVTDSLQIIANGLATVA----TSALFDFLKTYVAQEEVERIVIGKPM 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV+ +P F+DER T+V A Q ++ + +K R K Sbjct: 59 QTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKAL 118 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 VD ++A +ILQ S++ES + Sbjct: 119 VDEVSATIILQ------SYMESRR 136 >gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM 4136] Length = 151 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID GT RIGLA+SD AHP + V Q E+ + + + ++GLPL M Sbjct: 5 GIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVEQ---EIAEIVRQKRVTTVVLGLPLRM 61 Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135 +G G AF + + +V V FV DERLT+V+A++ L + +K + QK Sbjct: 62 DGHRGEAATRVEAFADRLSKALRHEVTVKFV--DERLTSVAAERSL-GLEGKQKTKEQKK 118 Query: 136 -VDSIAAALILQEVLD 150 VD +AA ILQ+ L+ Sbjct: 119 LVDQVAAVAILQDYLN 134 >gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810] gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium DSM 4810] Length = 181 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 15/138 (10%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAFIIGLP 76 +D+G R+GLA SD A P L R +V + A EL + + ++GLP Sbjct: 21 GVDVGDVRVGLARSDLDGMIATPVETLERGSAVARVVEEARELEARV-------IMVGLP 73 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW----DERLTTVSAQQILIDMNVSRKKR 132 ++NG+EG R F ++ P DERLTTV+A Q L +K Sbjct: 74 RSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTVTAHQALHRSGRKGRKH 133 Query: 133 IQKVDSIAAALILQEVLD 150 VD +AA +ILQ+ LD Sbjct: 134 RSVVDQVAAVMILQQALD 151 >gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16] gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16] Length = 153 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G R+G+A + A P L + EL SFI E A +GLP +N Sbjct: 8 GVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGLPRLLN 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R++ + + +P DERL++V+A + L VS ++ + VD +A Sbjct: 68 GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127 Query: 141 AALILQEVLD 150 A IL++ L+ Sbjct: 128 AQQILEQALE 137 >gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis str. MC2 155] gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 170 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFIIGLPL 77 ID+GT RIG+A SDP A P + R K +T L + + I+GLP Sbjct: 23 GIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVEVIVGLPR 82 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + H + R P DERLTTVSAQ+ L + V + + +D Sbjct: 83 TLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRARGQKAVID 142 Query: 138 SIAAALILQEVLDR 151 +AA ILQ LD+ Sbjct: 143 QVAAVGILQGWLDQ 156 >gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855] gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8] gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM 13855] gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 7/145 (4%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENI 68 + +L + ID+GTKR+G+A++DP R FA P AL++L + + I Sbjct: 1 MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTY----APDEALDVLQALRDADGI 56 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++G PL G+ A+V + + V DER T+ A+ +L + VS Sbjct: 57 ARIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVS 116 Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151 + R K VD+ AAA+ILQ L+R Sbjct: 117 QPGRYDKGRVDAAAAAVILQGFLNR 141 >gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2] gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2] Length = 144 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GT+RIGLA D A P P L + L + + I ++G P NM+ Sbjct: 5 GIDYGTRRIGLAYGDE-LGIATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYPYNMD 63 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + AF ++ + +P DERLT+ A+ + + + VDS A Sbjct: 64 GSAGFKAKEVDAFAESL-RAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIVDSRA 122 Query: 141 AALILQEVLDR 151 AALILQ+ LD+ Sbjct: 123 AALILQDFLDQ 133 >gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1] gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1] Length = 153 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G R+G+A + A P L + EL SFI E A +GLP +N Sbjct: 8 GVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLN 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EG R++ + + +P DERL++V+A + L VS ++ + VD +A Sbjct: 68 GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127 Query: 141 AALILQEVLD 150 A IL++ ++ Sbjct: 128 AQQILEQAIE 137 >gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845] gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845] Length = 139 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID G KR GLA++DP A+ + T E L+ +I E ++ +IG P+ Sbjct: 4 ILAIDYGKKRTGLAVTDPLCIIANGLATVP----TSELFEFLNQYIAKEAVSQLVIGKPI 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV+ +P ++DER T+V A Q +I V +K R + Sbjct: 60 QPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKG 119 Query: 136 -VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 120 LVDEISATIILQDYM 134 >gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A] gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii PG-8A] Length = 140 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +DLG K +G+AIS+ G ++ + + + A+E LL + I ++GLP +M Sbjct: 5 GLDLGEKSLGVAISESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKHM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 N G + F ++ K V + WDERL+T +A +IL D N K+ D + Sbjct: 65 NNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDEV 123 Query: 140 AAALILQEVLD 150 AA +ILQ L+ Sbjct: 124 AAQVILQNYLN 134 >gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter proteolyticus DSM 5265] gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM 5265] Length = 137 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 19/139 (13%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA--AFIIGLP 76 I ++D G KRIG+A SD +A P K + LE I + I ++GLP Sbjct: 2 IVAVDFGLKRIGMARSDDSETWAFP-----HKTLEGNDLETKLIIELKKIGPRVVVLGLP 56 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134 NM+G+EG + RA + D V FWDERLT+ VS Q S KK I+ Sbjct: 57 RNMDGTEGEMAVAVRALGQRLED--VGFTVDFWDERLTSRLVSRQD-----PRSLKKAIK 109 Query: 135 ---KVDSIAAALILQEVLD 150 KVD ++A LILQE ++ Sbjct: 110 DKGKVDLMSAVLILQEYIN 128 >gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054] Length = 157 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A+ DP A P + +Q L+ + + + ++GLP ++N Sbjct: 13 AVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQARLK--AIVEEYDAVEVVVGLPRSLN 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP R + + V DER+TTV+A L S KK +D A Sbjct: 71 GKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSKKGRSVIDQAA 130 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 131 AVVILQSALE 140 >gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147] gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147] Length = 164 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G RIG A D R AHP + + + + I I+GLP++++ Sbjct: 14 AFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQEWQPENLIVGLPVHID 73 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSE R F H + R +P + DERL++V A+++L + V +K+ +D +A Sbjct: 74 GSEHALTRLARKFGHRLNGR-FRLPVYWVDERLSSVYAEELLRENGVRGRKQKPVLDQVA 132 Query: 141 AALILQEVLD 150 A ILQ D Sbjct: 133 AQAILQSFFD 142 >gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC 43183] gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056] gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC 43183] gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056] Length = 141 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + ++G Sbjct: 4 IIAIDYGKKRTGIAVSDTLQMIAN-------GLTTVPTHELLAFIMDYVAKEPVERILVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLENRRF 138 >gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli] Length = 139 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G K IG+AI A P L KK E+ + + ++G+P N Sbjct: 7 VIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIVVGVPFN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P R F+ + +R +P DERLTTV A+ L + + + + +DS Sbjct: 67 MDGTEQPITREARNFLMELKNR-FEIPVFPVDERLTTVEARSRLFALGGYKALKKKSIDS 125 Query: 139 IAAALILQEVLD 150 IAA LI++ L+ Sbjct: 126 IAAQLIVEIWLE 137 >gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18] gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18] Length = 139 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID G KR GLA++DP A+ + T E L+ +I E ++ +IG P+ Sbjct: 4 ILAIDYGKKRTGLAVTDPLCIIANGLATVP----TSELFEFLNQYIVKEAVSQLVIGKPI 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV+ +P ++DER T+V A Q +I V +K R + Sbjct: 60 QPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKG 119 Query: 136 -VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 120 LVDEISATIILQDYM 134 >gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii 1_2_48FAA] gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii 1_2_48FAA] Length = 141 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + ++G Sbjct: 4 IIAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVAKEPVERILVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + FV ++ + +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLD--RISFL 155 K VD I+A +ILQ L+ R +FL Sbjct: 117 KALVDEISATIILQTYLENKRFAFL 141 >gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus chthonoplastes PCC 7420] gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus chthonoplastes PCC 7420] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G+KRIG+A D A + R Q + + ++ ++GLP +MN Sbjct: 2 GLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSMN 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G + + + + + +P + DERLT+ A+Q+L +S + +D A Sbjct: 62 GTLGFQARQVQKYARRL-SAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRKA 120 Query: 141 AALILQEVLD 150 AA+ILQ+ LD Sbjct: 121 AAIILQQWLD 130 >gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori] gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori] Length = 138 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P P L + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK] gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1] gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK] gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1] Length = 175 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 ID+G+ RIG+A+SDP A P + R + + L L+ + E A +IGLP + Sbjct: 30 GIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVVIGLPRTL 89 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + R VP DER TTV+AQ+ L + V + + +D Sbjct: 90 GNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQKSMIDQA 149 Query: 140 AAALILQEVLDR 151 AA ILQ LD+ Sbjct: 150 AAVGILQNWLDQ 161 >gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640] gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 151 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA ILQ + S Sbjct: 123 SVLDQVAAQAILQSFFEGGS 142 >gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC 43768] gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC 43768] Length = 151 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 123 SVLDQVAAQAILQSFFE 139 >gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID GTKR G+A++DP + A + T T L L + T E + F+IG P Sbjct: 3 ILAIDYGTKRTGIAVTDPLQIIASGLCTVE----TPTLLAFLKQYTTEEAVEGFVIGQPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +N + + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 59 RLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQE L Sbjct: 119 IDEISATIILQEFL 132 >gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter haemolyticus ATCC 19194] gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter haemolyticus ATCC 19194] Length = 147 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P Q I + D GT+++G+AI A+P P K +LL + FI Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFI 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+ SE R F + + ++ DERLTT A++ L + + Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQTNISTWMV-DERLTTREAREELEFYQSKGQAK 122 Query: 133 IQKVDSIAAALILQ 146 DS AAAL++Q Sbjct: 123 RLSADSFAAALLIQ 136 >gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group] Length = 180 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +D+G+K +GLA+SD R A P L R K ++ A + ++ ++ ++A F++G P N Sbjct: 26 GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134 + G P R V + + + +WDE T+ + + +L + + + Sbjct: 86 LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKVMCVEALLHPLKLHDPVETK 145 Query: 135 KV-DSIAAALILQEVLDRIS 153 + D AA ILQ LD ++ Sbjct: 146 TMTDKFAAVCILQRYLDNMN 165 >gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 147 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ +Q I + D GT+++G+AI A+P P + K +LL + F+ Sbjct: 4 IQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFL 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+ SE R F + + ++ DERLTT A++ L + + Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQTNIQTWMV-DERLTTREAREELESYQSKGQAK 122 Query: 133 IQKVDSIAAALILQ 146 DS AAAL++Q Sbjct: 123 RLSADSFAAALLIQ 136 >gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP] gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 146 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++DLGTK G AISDP FA P KKV +L + I+G Sbjct: 9 ALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVIN---KLKHYEKKYEFDTIILG 65 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PL M G+ R F ++ + V DERL+TV A+ +L + N+S+ K + Sbjct: 66 YPLRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQSKIKE 124 Query: 135 KVDSIAAALILQEVLD 150 K DS+AAAL+L L+ Sbjct: 125 KKDSMAAALLLNYYLN 140 >gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group] Length = 180 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +D+G+K +GLA+SD R A P L R K ++ A + ++ ++ ++A F++G P N Sbjct: 26 GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134 + G P R V + + + +WDE T+ + + +L + + + Sbjct: 86 LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKVMCVEALLHPLKLHDPVETK 145 Query: 135 KV-DSIAAALILQEVLDRIS 153 + D AA ILQ LD ++ Sbjct: 146 TMTDKFAAVCILQRYLDNMN 165 >gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 138 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P P + + T + + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1] gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 128 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 7/131 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +A+ID+G KRIG AI GR P+ ++RK Q A +++SF+ I ++GLP Sbjct: 3 LAAIDVGLKRIGTAICLDGR-IVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLPKG 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + SE R H + ++ +P V+ DE+ ++ A+++ R K+ K+DS Sbjct: 62 GSSSE----EMERRIQHFVSLLELDIPVVYQDEQGSSFEAKEMT--QGQFRHKKDGKIDS 115 Query: 139 IAAALILQEVL 149 IAA +IL+ L Sbjct: 116 IAAKIILERHL 126 >gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185] gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185] Length = 138 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + I+G Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGDYIAKEPVERIIVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + + + + +K R Sbjct: 57 LPRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLESKRF 138 >gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108] gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108] Length = 141 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A+SD + A+ L Q ++ ++ E + ++GLP Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANG---LTTVPTHQLLAFIIDYVAKEPVERILVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + FV ++ ++ +P + DER T+V A + +++ + +K R K V Sbjct: 61 MNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLDRISF 154 D I+A +ILQ L+ F Sbjct: 121 DEISATIILQTYLENKRF 138 >gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5] Length = 137 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 17/140 (12%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIAAFIIGLP 76 I +ID GTKR G+A+SDP R A + V LE L + E++ ++G P Sbjct: 4 ILAIDYGTKRTGIAVSDPLRLIAGG-----LETVETKGLEAWLAKYFAAEDVTTIVVGKP 58 Query: 77 LNMNGSEGPRVHSTRAFVHNMID--RKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKR 132 M+G+ T FV + R+ Y VF+DER T+V A + +++ + R R Sbjct: 59 TQMDGTP----SETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMAR 114 Query: 133 IQK--VDSIAAALILQEVLD 150 K VD I+A +ILQ ++ Sbjct: 115 RNKALVDKISATIILQSYME 134 >gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366] gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366] Length = 138 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 17/141 (12%) Query: 19 IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 I + D GTKRIG+A++DP G HP+ + L ++ E + AF+ Sbjct: 4 ILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEY---------LKKYLLAEQVEAFV 54 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 G P M+G+ + F + +P + DER T+ A Q ++ + ++ R Sbjct: 55 FGDPKQMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDR 114 Query: 133 IQK--VDSIAAALILQEVLDR 151 K VD+I+A +ILQ +++ Sbjct: 115 KNKERVDTISATIILQYFMEQ 135 >gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057] gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057] Length = 141 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A+SD + A+ L Q +L ++ E + ++GLP Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANG---LTTVPTHQLLTFILDYVAKEPVERILVGLPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN + + FV ++ + +P + DER T+V A + +++ + +K R K V Sbjct: 61 MNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNKALV 120 Query: 137 DSIAAALILQEVLDRISF 154 D I+A +ILQ L+ F Sbjct: 121 DEISATIILQTYLENRRF 138 >gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685] gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685] Length = 151 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 123 SVLDQVAAQAILQSFFE 139 >gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195] gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides ethenogenes 195] Length = 133 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 +G K IG+A+SDP R A P L R +T + + + T +IGLP+++NG+ Sbjct: 1 MGDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTI 60 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 GP+ +AF ++ + + +F DER +T A++ + D + + + D+ AAA+ Sbjct: 61 GPQAEKVKAF-SGLLSQSLNTEIIFRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117 Query: 144 ILQEVLDRIS 153 ILQ+ LD + Sbjct: 118 ILQDYLDETN 127 >gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius LAA1] gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius LAA1] Length = 105 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 E + ++G PL+M+G F M+ + +P +DERLTTVSA++ILI+ Sbjct: 8 EEVGRIVVGRPLHMSGQPSEMTSRAEKFAR-MLAARTGLPVDLYDERLTTVSAERILIEQ 66 Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149 NV R++R VD+ AA ++L++ L Sbjct: 67 NVRRRERRATVDAAAAQVLLEDYL 90 >gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9] gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9] Length = 158 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G+KR+G+A D A + RK + E+ + + ++G+P + + Sbjct: 14 GLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSRD 73 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + F N + + + +P + DERLT+ A+Q+L+ N S VD A Sbjct: 74 GSIGEQARRIQKFA-NRLAKTLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRKA 132 Query: 141 AALILQEVLD 150 A++ILQ+ LD Sbjct: 133 ASIILQQWLD 142 >gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1] gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1] Length = 175 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+GT RIG+A+SDP A P + R K+ T+ L + + + ++GLP + Sbjct: 30 GVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVVVGLPRTL 89 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + R VP DER TTV+AQ+ L + V + + +D Sbjct: 90 ADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQRSVIDQA 149 Query: 140 AAALILQEVLDR 151 AA ILQ LD+ Sbjct: 150 AAVGILQNWLDQ 161 >gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina MBIC11017] gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina MBIC11017] Length = 144 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG +RIG+A D A + R T+ L + + ++GLP M Sbjct: 8 GLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVVGLPYTMK 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + T+ I + + +P F DERLT+ A+ ++ + ++ ++ +D A Sbjct: 68 GEVGTQAQKTQKLAKR-IAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMIDRKA 126 Query: 141 AALILQEVLDRISFLESS 158 AALILQ LD+ +L S+ Sbjct: 127 AALILQRWLDQKPWLSST 144 >gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg] gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum Weiss] gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum MopnTet14] Length = 145 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 2/140 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAF 71 +K + +D G KRIGLA + P + + TA L++ I + Sbjct: 1 MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130 + G PL M S V S + ++ + + WDERL++ A+++L D +SRK Sbjct: 61 VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 +R DS+AA LIL LD Sbjct: 121 QRKNSSDSLAATLILSSFLD 140 >gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C] gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C] Length = 158 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 61/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + + L + ++GLP +++ Sbjct: 12 AIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEPLEVVVGLPRSLS 71 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + + V DER+TTV+A Q L + KK +D A Sbjct: 72 GREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRNAKKGRSVIDQAA 131 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 132 AVVILQNALE 141 >gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 155 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 7/153 (4%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ++ +KS+ ++ I +D+G K+IG+A SD + A R+ +++ L L+ + E Sbjct: 7 DEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKD-LGYLNRVLKE 65 Query: 67 NIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123 N A + +IGLP ++ E F + +I +K V DE L+T A L Sbjct: 66 NEAGSMVIGLPFTIDEQETEWCKVIIQFANKII-KKCKVHIYLQDESLSTSLATHALKIT 124 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 +++++ K+I D IAA +ILQ LD+I+ ++ Sbjct: 125 GISITKSKKID--DKIAACIILQRTLDKINAIK 155 >gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 169 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 57/131 (43%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G+ RIG+A SDP A P + R + + L ++GLP + Sbjct: 26 GVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVVGLPRTLA 85 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GP + R P DERLTTVSAQ+ L V K++ +D A Sbjct: 86 DRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQRAVIDQAA 145 Query: 141 AALILQEVLDR 151 A ILQ LD+ Sbjct: 146 AVAILQSWLDQ 156 >gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327] gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77 I ID GTKRIG+A SDP FA P V + L LS I E I ++G PL Sbjct: 8 IIGIDFGTKRIGVAKSDPLGMFAQP----VGTFDMEGLLGALSKIRNEEGIERIVVGYPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 + G E F + VP DE ++ SA ++L SRKKR +K Sbjct: 64 SDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEKGR 123 Query: 136 VDSIAAALILQEVLD 150 +D+ AA LILQ LD Sbjct: 124 LDTAAACLILQSWLD 138 >gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 137 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT IG A+ A P + ++ I ++GLPLN Sbjct: 5 ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F N ++ + +P DERLTTVSA+ + + + + KVDS Sbjct: 65 MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123 Query: 139 IAAALILQEVLD 150 I+A LIL+ + Sbjct: 124 ISACLILESWFE 135 >gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 137 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT IG ++ A P + ++ I ++GLPLN Sbjct: 5 ILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSE P + F N ++ + +P DERLTTVSA+ + + + + KVDS Sbjct: 65 MDGSEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123 Query: 139 IAAALILQEVLD 150 I+A LIL+ + Sbjct: 124 ISACLILESWFE 135 >gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107] gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus Ueda107] Length = 143 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A R A P L + E+ + + T ++GLPLNM+ Sbjct: 7 AFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 GSE R F + R V V V DERL++ A+ +++ SR R VDSI Sbjct: 67 GSESELSARARKFANRTQGRFGVKVEMV--DERLSSFEAKGEVMERGGSRDYRHNPVDSI 124 Query: 140 AAALILQEVLDR 151 AA LIL+ L+R Sbjct: 125 AARLILEAWLER 136 >gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA 1090] gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] Length = 151 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRLNGR-FNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL L+ Sbjct: 124 VLDQVAAQAILHGFLE 139 >gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC 25976] gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC 25976] Length = 137 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 31/147 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GT IG A+ + +T TA L SF + I + Sbjct: 5 ILAFDFGTYSIGCAVG---------------QDITGTAQGLSSFKAQDGIPNWDQIEKVI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+G+E P + F N ++ + +P DERLTTVSA+ + Sbjct: 50 QEWLPERLVVGLPLNMDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIF 108 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 + + + KVDSI+A LIL+ + Sbjct: 109 ERGGYKALKKDKVDSISACLILESWFE 135 >gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 142 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTKR G+A SD G A PR +V + ELL+ E A+++GLPL + Sbjct: 5 GIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLHD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G++ R FV + R+ +P +E L++ A+ L D +S + VD A Sbjct: 65 GTDTLTTRQVRNFVERL-KRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVDQQA 123 Query: 141 AALILQEVLD 150 A ILQ L+ Sbjct: 124 AVRILQSFLN 133 >gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697] gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697] Length = 141 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + ++G Sbjct: 4 IIAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVAKEPVERILVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + FV ++ + +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQTYLENKRF 138 >gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1] gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1] Length = 153 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 7/131 (5%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS--FITTENIAAFIIGLPLNM 79 ID+G R+G+A SDP A P + R + + LL+ F E ++GLP+ + Sbjct: 9 IDVGKVRVGVARSDPHGMIATPVETVQRASSSIKRILLLAVEFEAVE----LVVGLPIAL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G + P RAF + D + DER+TT+SAQ L + K VD + Sbjct: 65 SGRDTPSTADARAFAQELADGS-DITVRLVDERMTTMSAQSALRASGRTTKNSRSVVDQV 123 Query: 140 AAALILQEVLD 150 AA +ILQ LD Sbjct: 124 AAVIILQHALD 134 >gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 138 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS] gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 142 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAA 70 S ++ I ID GTKRIG+A+SDP R FA P + + + +LS + E I Sbjct: 2 SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVR----VLSRVRDDEGIEL 57 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G P++ G E FV + + +DE ++ +A +IL SRK Sbjct: 58 VVVGYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRK 117 Query: 131 KRIQK--VDSIAAALILQEVLD 150 KR +K +D+ AA LILQ LD Sbjct: 118 KRNEKGRLDTAAACLILQGYLD 139 >gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii CS-505] gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii CS-505] Length = 154 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G+KR+G+A D A + RK + E+ + + ++G+P + + Sbjct: 14 GLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSGD 73 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + F N + + + +P DERLT+ A+Q+L+ N S VD A Sbjct: 74 GSMGEQARRIQKFA-NRLAKALGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRKA 132 Query: 141 AALILQEVLD 150 A++ILQ+ LD Sbjct: 133 ASIILQQWLD 142 >gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis] Length = 167 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 20/164 (12%) Query: 1 MSILLIEDL------VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54 M++L ++ L V ++P + +D+GT +G+A+SDP A P+ L+R + Sbjct: 1 MAVLTVKQLQSLYSKVAHIRPR--LLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLR 58 Query: 55 --TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDE 111 + L+ + AF++GLPL +G E + + F+H + ++ +P VF DE Sbjct: 59 PFKSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDE 118 Query: 112 RLTTVSAQQILIDMNVSRKKR-----IQKVDSIAAALILQEVLD 150 +T Q+ +D +KKR ++K D AAA+ILQ LD Sbjct: 119 WGST----QMAMDDYRYQKKRDWNRGLRKKDENAAAIILQSFLD 158 >gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS] gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS] Length = 133 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 +G K IG+A+SDP R A P L R +T + + + T ++GLP+++NG+ Sbjct: 1 MGDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTI 60 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 GP+ +AF ++ + + VF DER +T A++ + D + + + D+ AAA+ Sbjct: 61 GPQAEKVKAF-SGLLSQSLDTEIVFRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117 Query: 144 ILQEVLDRIS 153 ILQ+ LD + Sbjct: 118 ILQDYLDETN 127 >gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis L2TR] gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR] Length = 144 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+A+ A P + K+ + ++GLPLN Sbjct: 4 VIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGLPLN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F N + + +P F DERLT+ SA++ L RK + VDS Sbjct: 64 MDGTEQPLTQKAKKF-GNRLHGRFGLPVAFQDERLTSTSARESLFAEGGFRKLKKGAVDS 122 Query: 139 IAAALILQEVLD 150 AA +I+++ ++ Sbjct: 123 QAALIIVEDFMN 134 >gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 138 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 SFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVVILESYFEQ 136 >gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC 29220] gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC 29220] Length = 138 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 SFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group] Length = 237 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+A+ GR PRP V K + + L LL + I+GLP++ Sbjct: 78 GVDLGEARTGVAV---GRGITLPRPLTVLKLRGQKLELMLLDIAQQQEADELIVGLPVSA 134 Query: 80 NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +GSE P+ + R+ V + DR + V DE TT+ A + +I V R R K Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRV--YLQDEHGTTIDALEFMISRGVKRSARDVK 192 Query: 136 VDSIAAALILQ 146 D+ +A +IL+ Sbjct: 193 SDAYSAMMILE 203 >gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836] Length = 141 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 7/135 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79 ++D GTKR G+A+SD + A+ + T T L+ L +++ E++ I+GLP M Sbjct: 6 ALDYGTKRTGIAVSDTLKIIANGLTTVP----THTLLDYLKTYLQKEDVERIIVGLPKQM 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137 N + R FV + + ++DER T+ A + ++D + + R K VD Sbjct: 62 NNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNKSLVD 121 Query: 138 SIAAALILQEVLDRI 152 I+A +ILQ ++ + Sbjct: 122 EISATIILQGYMESL 136 >gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109] gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109] Length = 190 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFI--TTENIAAFI-IGL 75 ++D+GT R+G+A SDP A P L R K + TA ++ E A + +GL Sbjct: 20 AVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVGL 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +++G+EG RA+ + V DER++TVSA L S ++ + Sbjct: 80 PRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHREV 139 Query: 136 VDSIAAALILQEVLD 150 VD AA +ILQ LD Sbjct: 140 VDQAAAVVILQHALD 154 >gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC BAA-974] gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC BAA-974] Length = 164 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 66/148 (44%), Gaps = 12/148 (8%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-------KVTQTALELLSFITTEN 67 P P +DLG RIGLAISD G FA P L R + L + Sbjct: 4 PLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEHR 63 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 IA ++G P N+ G + FV + VP DER+TT+ A + L + V Sbjct: 64 IALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAGV 123 Query: 128 SRKKRIQK-----VDSIAAALILQEVLD 150 S K+ ++K VD +AA ILQ LD Sbjct: 124 SGKRLVRKGQRGVVDQLAATAILQGWLD 151 >gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136] gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136] Length = 138 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A+SDP + A L Q LL++I E + IIG P Sbjct: 4 ILAIDYGRKRTGIAVSDPLQIIASG---LTTVPTHQLMDFLLNYIKQEQVECIIIGHPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 +N + + + F++ + +P DER T+V A Q ++ + +K R K V Sbjct: 61 LNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNKALV 120 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D I+A +ILQ S+LES + Sbjct: 121 DEISATIILQ------SYLESRR 137 >gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 142 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G RIG+A D +HP + + + + F++GLP++ + Sbjct: 2 AFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHTD 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G+E H +R F + R +P V+W DERL++V A+ +L + V KKR +D + Sbjct: 62 GTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119 Query: 140 AAALILQEVLD 150 AA ILQ + Sbjct: 120 AAQAILQSFFE 130 >gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985] gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985] Length = 200 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR------KKVTQTALELLSFITTEN-IAA 70 P IDLG RIGLAISDP FA P L R K L L+ + E+ IA Sbjct: 43 PRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRIAL 102 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G P N+ G + FV + + VP DER+TT+ A + L + VS K Sbjct: 103 VVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVSGK 162 Query: 131 KRIQK-----VDSIAAALILQEVLD 150 + ++K VD +AA ILQ LD Sbjct: 163 RLVRKGQRGVVDQLAATAILQGWLD 187 >gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606] gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606] Length = 146 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I SID G KR GLA++D + A+ + T ++ L +I E + +IG P+ Sbjct: 4 ILSIDYGKKRTGLAVTDSLQIIANGLATVS----TSILIDFLKDYIAKETVELIVIGRPV 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +G+ + FV+ VP ++DER T+V A ++++D + +K R ++ Sbjct: 60 KPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRERKG 119 Query: 136 -VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 120 LVDEISATIILQDFM 134 >gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104] gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 165 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+G+ RIG+A SDP A P + R + + L + +T ++GLP + Sbjct: 24 GIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGLPRTLA 83 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + R P DERLTTV+AQ+ L V K++ +D A Sbjct: 84 DRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAA 143 Query: 141 AALILQEVLD--RISFLESSKG 160 A ILQ LD R + E+ G Sbjct: 144 AVAILQSWLDQRRAAVREAGDG 165 >gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group] gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group] gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group] gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group] gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group] gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group] Length = 237 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+A+ GR PRP V K + + L LL + I+GLP++ Sbjct: 78 GVDLGEARTGVAV---GRGITLPRPLTVLKLRGQKLELMLLDIAQQQEADELIVGLPVSA 134 Query: 80 NGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +GSE P+ + R+ V + DR + V DE TT+ A + +I V R R K Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRV--YLQDEYGTTIDALEFMISRGVKRSARDVK 192 Query: 136 VDSIAAALILQ 146 D+ +A +IL+ Sbjct: 193 SDAYSAMMILE 203 >gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608] gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608] Length = 139 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID G KR GLA++DP R A+ + T + L+ +I E + +IG P+ Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIANG----LATVATSGLFDFLTQYIAEEPVDRLVIGRPV 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +G + FV+ +P ++DER T+V A Q LI V +K R + Sbjct: 60 QPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRRENKG 119 Query: 136 -VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 120 LVDEISATIILQDYM 134 >gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila DSM 44928] gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM 44928] Length = 171 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+GT RIG+A D A P V+ + + +L+ L+ + E A ++GLP ++ Sbjct: 22 GVDVGTVRIGVASCDRDGLLATPV-ETVKAEPRRASLDRLAALAAEYEAFEIVVGLPRSL 80 Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EGP RA+ +++ R P DERL+TV+A Q L V KK VD Sbjct: 81 SGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGRSVVDQ 140 Query: 139 IAAALILQEVLD 150 AA +ILQ LD Sbjct: 141 AAAVVILQNALD 152 >gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35243] gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35243] Length = 145 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 64/129 (49%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D+G R+G+A + A P L + EL SFI E A +GLP +NG Sbjct: 1 MDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNG 60 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 EG R++ + + +P DERL++V+A + L VS ++ + VD +AA Sbjct: 61 KEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAA 120 Query: 142 ALILQEVLD 150 IL++ ++ Sbjct: 121 QQILEQAIE 129 >gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC 19061] gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC 19061] Length = 139 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GT+ IG AI ++VT TA L +F E + Sbjct: 3 NRTIIAFDFGTRSIGAAIG---------------QEVTGTARALSAFKANEGSPNWQLIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I+GLPLNM+G+E P R F N + + V DERLTTV A+ Sbjct: 48 KLLKEWQPDLVIVGLPLNMDGTEQPVTAQARKFA-NRLHGRFGVQVALHDERLTTVEARS 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D + KVD+ +A +IL+ +R Sbjct: 107 HLFDHGGYKALNKGKVDAASAVIILESWFER 137 >gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900] Length = 146 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + FI+GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + ++ DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQ 146 DS AAAL++Q Sbjct: 125 ADSFAAALLIQ 135 >gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 138 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 158 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 60/130 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID+G RIG+A DP A P + + V L + ++GLP +++ Sbjct: 12 AIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEPLEVVVGLPRSLS 71 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G EGP RAF + V DER+TTV+A Q L + KK +D A Sbjct: 72 GREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKNAKKGRSVIDQAA 131 Query: 141 AALILQEVLD 150 A +ILQ L+ Sbjct: 132 AVVILQNALE 141 >gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 138 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 138 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR+GLA++DP + A + K V Q L + E I F++G+P Sbjct: 4 IVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQF---LKDYHEQEGIELFVVGMPKR 60 Query: 79 MNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 ++G+E AF++ N D + DER T+ A +I ++K R + Sbjct: 61 LDGTESHATKHVEAFLNLLKKNFPDTDIET----HDERFTSKIALNAMIAGGTTKKYRRE 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K +D ++A +ILQ L+++ Sbjct: 117 KGNIDKVSAVVILQSYLEKMQL 138 >gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF] gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE] gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii ACICU] gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057] gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein [Acinetobacter baumannii AB307-0294] gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624] gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606] gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii AB056] gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii AB058] gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii AB059] gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013150] gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013113] gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6014059] gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE] gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii] gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU] gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978] gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein [Acinetobacter baumannii AB307-0294] gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624] gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606] gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2] gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii TCDC-AB0715] gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013150] gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013113] gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6014059] Length = 146 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + FI+GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + ++ DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQ 146 DS AAAL++Q Sbjct: 125 ADSFAAALLIQ 135 >gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100] gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100] Length = 135 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID GTKR G+A++DP + A L T+ L + E++ AF++G P N++ Sbjct: 2 AIDYGTKRTGIAVTDPLQIIASG---LDTVPTTELMNFLRQYCQEEDVEAFVVGEPKNLD 58 Query: 81 GSEGPRVHSTRAFV---HNMI-DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135 + H AFV N+ D++V + DER T+ A + + SRKKR K Sbjct: 59 DTPAQIHHLVMAFVAQIENLFPDKRV----ILRDERFTSKDATRSIRQSVPSRKKRRDKG 114 Query: 136 -VDSIAAALILQEVLDRISF 154 VD ++A +ILQE L++ + Sbjct: 115 LVDKVSAVIILQEYLEKYKY 134 >gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena CCY9414] gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena CCY9414] Length = 156 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Query: 17 QPIAS---IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 QP S +D G KR+G+A D A + R + ++ + + + +I Sbjct: 8 QPFISALGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVI 67 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +M+G+ G + + F + + + +P + DERLT+ A+Q+LI N S + Sbjct: 68 GLPYSMDGTLGFQARQVQKFAKRL-GKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHK 126 Query: 134 QKVDSIAAALILQEVLD 150 +D AA++ILQ+ LD Sbjct: 127 GLIDRKAASIILQQWLD 143 >gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str. 'morsitans'] gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 141 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 11/139 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRP---FLVRKKV--TQTALELLSFITTENIAAFII 73 I + D GT+ IG+AI R RP F R V Q +LL E + ++ Sbjct: 7 IMAFDFGTRSIGVAIGQ--RVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETV---VV 61 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+GSE P R F + M R V V DERL+TV A+ L + R Sbjct: 62 GLPLNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALEK 120 Query: 134 QKVDSIAAALILQEVLDRI 152 KVD+ +A +IL+ L++ Sbjct: 121 GKVDAGSAVIILESWLEQF 139 >gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae NCCP11945] gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae 35/02] gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae DGI18] gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA6140] gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA19] gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae MS11] gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID18] gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID1] gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID24-1] gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID332] gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae SK-92-679] gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae SK-93-1035] gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae DGI2] gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945] gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 151 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRLNGR-FNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL L+ Sbjct: 124 VLDQVAAQAILHGFLE 139 >gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168] Length = 91 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+ ++G PL + G PR F +++ + + VF DERLTT AQ L+D+ + Sbjct: 6 ISILVLGYPLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGI 64 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 S KKR + +D +AA +IL+ FL + KG Sbjct: 65 SFKKRQKVIDKLAAQIILER------FLNTKKG 91 >gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC 23970] gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC 23970] Length = 151 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAESLLSEARVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D AA ILQ + Sbjct: 123 SVLDQAAAQAILQSFFE 139 >gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 151 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 124 VLDQVAAQAILHGFFE 139 >gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae 342] gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae 342] Length = 138 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK IG+A+ A P P L + + + A I+GLPLNM+ Sbjct: 7 GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V V DERL+TV A+ L + R VDS + Sbjct: 67 GTEQPLTARARNFA-NKIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVVILESYFEQ 136 >gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM 43017] gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis DSM 43017] Length = 154 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ++D+G+ R+G+A+SDP A P L R T LE L+ + E ++ I+GLP + Sbjct: 11 AVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVIVGLPRTL 70 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + + +R V DERL+TVSA ++L V +K+ VD Sbjct: 71 ADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQRAVVDQA 130 Query: 140 AAALILQEVLD 150 AA LQ LD Sbjct: 131 AAVEFLQAWLD 141 >gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT] gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336] gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus 129PT] gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336] Length = 141 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG A+ A P + L++ + ++GLPLN Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSE H R F N ++ + V DERLTT A+ + R + +KVDS Sbjct: 65 MDGSEQDLTHLARKFA-NRLNGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVDS 123 Query: 139 IAAALILQEVLD 150 I+A LIL+ + Sbjct: 124 ISACLILESWFE 135 >gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM 6946] gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM 6946] Length = 135 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + IAS+D+G KRIG+A+ P+ ++RK Q A E+ +F+T I ++GLP Sbjct: 2 KKIASLDVGLKRIGVALC-LASGIVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGLP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + E R H + V+ DE +++ A++++ + R+KR K+ Sbjct: 61 KGGSSEE----EMKRRITHFVSLLAFSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGKI 114 Query: 137 DSIAAALILQEVLD 150 DSIAA +IL+ LD Sbjct: 115 DSIAAKVILERYLD 128 >gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 233 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLA+S + F+ RP V K + + L+LL E + FIIGLP++ Sbjct: 68 GVDLGMSRTGLALS---KGFS-VRPLSVLKLRGQKLELQLLEIAGREEVDEFIIGLPVSD 123 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ + R + + DE T+ A ++IDM S+ R ++D Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183 Query: 138 SIAAALILQ 146 + AA ++L+ Sbjct: 184 AYAAMMVLE 192 >gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium subsp. avium ATCC 25291] gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 167 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+G+ RIG+A SDP A P + R + + L + +T ++GLP + Sbjct: 26 GIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGLPRTLA 85 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + R P DERLTTV+AQ+ L V K++ +D A Sbjct: 86 DRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAA 145 Query: 141 AALILQEVLD--RISFLESSKG 160 A ILQ LD R + E+ G Sbjct: 146 AVAILQSWLDQRRAATREAGDG 167 >gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22] gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55] gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22] gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55] Length = 139 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK IG+A+ A P P L + + + A I+GLPLNM+ Sbjct: 8 GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V V DERL+TV A+ L + R VDS + Sbjct: 68 GTEQPLTARARNFA-NKIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 126 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 127 AVVILESYFEQ 137 >gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium SCB49] gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium SCB49] Length = 136 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++D + A L + ++ L S++ EN+ A ++G P Sbjct: 4 ILAIDYGGKRTGIAVTDEMQIIASG---LTTVETSKLLPFLESYLANENVTALVVGEPTQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 +G+ + F+ + +P DER T+ A Q +ID + +K+R K V Sbjct: 61 KDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNKALV 120 Query: 137 DSIAAALILQEVL 149 D IAA +ILQE + Sbjct: 121 DEIAATIILQEFM 133 >gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM 14977] gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM 14977] Length = 133 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G RIG+A+++ GR A R ++ R+ + + E ++GLP Sbjct: 3 GLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRTG 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 G EG + RAF + + V FV DER TT A Q L ++ RKKR QK +D Sbjct: 63 GEEGAQAAKVRAFAAALEAAGLEVRFV--DERFTTRVAAQAL--AHLPRKKRQQKGRLDE 118 Query: 139 IAAALILQEVLDR 151 AA IL+ L+R Sbjct: 119 AAAVAILETYLER 131 >gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01] gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 128 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 +G RIGLA+ + G FA R +LVR+ + + LL F+ E + ++GLPL + E Sbjct: 1 MGEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKE 60 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 + V + + V V V DER TT +A + L ++ ++D ++A + Sbjct: 61 SAQAQRVLPLVEALRAKGVEVELV--DERYTTQAAARRLKHAPKRIRREKGRLDEMSAVI 118 Query: 144 ILQEVL 149 +L+ L Sbjct: 119 LLEGYL 124 >gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2] gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2] Length = 139 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLN 78 ++DLG++ G AISD G F + Q L EL + I I+G PL Sbjct: 5 ALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILGYPLK 64 Query: 79 MNGSEGP---RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +GS+ RV S + + + ID KV V DE+ +T +A+ ILI + RKKR Q Sbjct: 65 NDGSKSQSTLRVESFKKMIEDNIDIKV----VLVDEQYSTKNAENILIFSGMKRKKRKQF 120 Query: 136 VDSIAAALILQEVL 149 D +AA LIL++ L Sbjct: 121 KDKLAAQLILEDFL 134 >gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum] Length = 171 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 83/156 (53%), Gaps = 11/156 (7%) Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61 L DLVK+ + + + +D+G K +GLA+SD + A P LVRKK + A + S Sbjct: 9 LFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAADFKS 68 Query: 62 FITTENIAAFIIGLPLNMN--GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVS 117 ++ ++ F+IGLP + + S+ +V + F+ N+ ++ + + +W+E T+ + Sbjct: 69 LVSKYSLKGFVIGLPFDRHLVSSDAVKV---KVFIDNLRRTNMFDGLKYTYWNECFTSKN 125 Query: 118 AQQILIDMNVSRKKRIQK-VDSIAAALILQEVLDRI 152 + ++ +N++ + +D AA ILQ LD + Sbjct: 126 VEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYV 161 >gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus PHEA-2] Length = 146 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + F++GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQ 146 DS AAAL++Q Sbjct: 125 ADSFAAALLIQ 135 >gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 144 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GT+R G+A++D A PR +V ELLS + E A ++GLPL Sbjct: 5 GIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLAG 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E R FV + R+ +P E L++ A + L + +S ++R VD A Sbjct: 65 GEETLITRQVRNFVARL-RRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQA 123 Query: 141 AALILQEVLD 150 A IL+ L+ Sbjct: 124 AVRILESFLN 133 >gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus DSM 14838] gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus DSM 14838] Length = 140 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + ++G Sbjct: 4 ILAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLTFILDYVGKEPVERILVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + FV + + +P + DER T+V A + +++ + +K R Sbjct: 57 LPKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 117 KALVDEISATIILQSYLENKRF 138 >gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1] gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1] Length = 146 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + F++GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQ 146 DS AAAL++Q Sbjct: 125 ADSFAAALLIQ 135 >gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145] gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145] Length = 139 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFA----HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 ++DLG++ G AISD A + R F + + E+L ++ I I+G P Sbjct: 5 ALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKN--EVLRYMKEYKIDGIILGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +GS+ + F +++ + + +P ++ DE+ +T +A++ILI + ++R+KR Sbjct: 63 KKNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKNFK 121 Query: 137 DSIAAALILQEVLD 150 D +AA LIL++ L+ Sbjct: 122 DKLAAQLILEDYLN 135 >gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus asiaticus 5a2] gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus 5a2] Length = 141 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 19/147 (12%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR+GL+++DP + A P L T L +++ EN+ AF++G P + Sbjct: 4 IMAIDYGLKRVGLSVTDPLQIIASP---LTTVAANDTLTFLQTYVKKENVEAFVVGYPTD 60 Query: 79 MNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 + P + + F+ N D++++ DER T+ A L++ +K R Sbjct: 61 IKDKNTPIIVAISQFIELLQRNFPDQQIFQ----HDERYTSKLAAASLVEGGFKKKDRRN 116 Query: 135 K--VDSIAAALILQEVLDRISFLESSK 159 K +D ++A +ILQ SFL S K Sbjct: 117 KENLDKLSATIILQ------SFLSSYK 137 >gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str. CTCB07] gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 155 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+GT RIG++ SD A P + R + +T + I+GLPL ++ Sbjct: 8 GIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLALS 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G AF ++ +V P DERL+TVSA L + K VD A Sbjct: 68 GVHTASTADAVAFAEALV-VEVGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQAA 126 Query: 141 AALILQEVLD 150 A +ILQ LD Sbjct: 127 ATIILQHALD 136 >gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU Goat Q177'] gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii CbuK_Q154] gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU Goat Q177'] gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 141 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 15 PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS---FITTENIA 69 PNQ + ++ D G KRIG+A+ G+ H + K L+ I T + Sbjct: 2 PNQNLIALGFDFGMKRIGVAV---GQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHAN 58 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ Sbjct: 59 VLVVGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPLSMVDERLTTIEAKRQWYEQGLT- 116 Query: 130 KKRIQKVDSIAAALILQEVL 149 KR Q +D+ AA LIL++ L Sbjct: 117 -KRPQHLDNYAAKLILEQWL 135 >gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1] gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1] Length = 123 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID GTKRIGLA+ D + +PF + K L + I ++G PL Sbjct: 2 ILGIDYGTKRIGLALGD--KHLKIYKPFKIIKNDKNLIQTLKHIVKAYKIELIVLGYPLT 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EG R + F + ++ +++ + V DER TT A+ ++S +K I D Sbjct: 60 PSGKEGQRAKKVKKF-YELLKKELNIDIVLQDERYTTFEAK------SLSDEKEI---DH 109 Query: 139 IAAALILQEVLDRI 152 I+A +IL+E + + Sbjct: 110 ISAYIILKEYAENL 123 >gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1] gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1] Length = 168 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTALELLSFITTENIAAFII-GL 75 P+ ++D+G KRIG+A+ D RF R + + L+ + E A ++ GL Sbjct: 28 PLIALDIGMKRIGVAVCD---RFGISCRGVTCLMRRDHGWPQQLAKVVREYGAKSVVAGL 84 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+G+EG + RA V + + + +P F DERL+T +A++ L + KK +K Sbjct: 85 PKNMDGTEGVQAADARAAVAEL-KKTLPLPVTFQDERLSTWTAKERLYAQGLREKKVQEK 143 Query: 136 VDSIAAALILQEVL 149 +D AAA+IL++ L Sbjct: 144 LDQTAAAVILEDFL 157 >gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus PCC 6301] gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 149 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P +D+G +RIG+A D +VR+ + + + +IG Sbjct: 2 PYYAALGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +M+GS G + T+ F + + + +P + DERLT+ A++++ + S + Sbjct: 62 LPYSMDGSLGSQAKQTQRFATRL-SKALQLPITYVDERLTSFEAEEMIKAVGRSPSRDKG 120 Query: 135 KVDSIAAALILQEVLD 150 +D AAALILQ+ LD Sbjct: 121 AIDRKAAALILQQWLD 136 >gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Megamonas hypermegale ART12/1] Length = 75 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 45/74 (60%) Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R + F +++ +FWDERL+TV+A + L++ +VSR KR + +D Sbjct: 1 MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60 Query: 139 IAAALILQEVLDRI 152 +AA ILQ LD + Sbjct: 61 MAAVFILQGYLDSL 74 >gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium kroppenstedtii DSM 44385] gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM 44385] Length = 164 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTEN---IAAFIIGL 75 +D+GT RIG+A+SDP A P + R K+ ++ S + + + I+GL Sbjct: 21 GLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVVEVIVGL 80 Query: 76 PLNMNGSEGPRVHSTRAF---VHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++GS G V + + ++R V VP + DER+TTV AQ L D +S K+ Sbjct: 81 PRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDAGISVKE 140 Query: 132 RIQKVDSIAAALILQEVLDR 151 +D AA ILQ LD+ Sbjct: 141 GRSVIDQAAAVEILQTWLDQ 160 >gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A] gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A] Length = 139 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++DP R A+ L + L +I E + ++G P Sbjct: 4 IIAIDYGKKRTGIAVTDPLRIIANG---LATVSTPELYAFLQEYIQREKVDLIVMGKPTQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 ++G + FV VP ++DER T+ A Q +I V +K R Q Sbjct: 61 LSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQDKGL 120 Query: 136 VDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 121 VDEISATIILQDFM 134 >gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis SH0165] gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction endodeoxyribonuclease [Haemophilus parasuis SH0165] Length = 138 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GT IG A+ A P + ++ I ++GL Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P + F N ++ + +P DERLTTV A+ + + + K Sbjct: 62 PLNMDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120 Query: 136 VDSIAAALILQEVLDRIS 153 VD+I+A LIL+ ++ S Sbjct: 121 VDAISACLILESWFEQQS 138 >gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica PHL213] gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica PHL213] gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 141 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 31/147 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 + + D GT IG A+ + +T TA L +F + I + Sbjct: 9 VIAFDFGTNSIGCAVG---------------QSITGTAQGLTTFKAQDGIPNWEEIGKLL 53 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+G+E P R F N ++ + +P DERLTTV A+ + Sbjct: 54 QDWKPDMLVVGLPLNMDGTEQPLTQRARKFA-NRLNGRFNLPVELQDERLTTVEAKAEIF 112 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 + + KVDSI+A LIL+ + Sbjct: 113 SRGGYKALKKDKVDSISACLILESWFE 139 >gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila UNI-1] gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila UNI-1] Length = 152 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLP 76 I ++D G RIGLAISDP A R V V + A + T + + I+G Sbjct: 5 ILAVDPGDVRIGLAISDPTGTIA--RALGVIHHVARAIDAATIAQIATEQGVVRIIVGQA 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ +G P+ + A + I ++ +P WDE +T AQ M V RK+R + Sbjct: 63 LDDHGLPTPQGRKS-ARLAEAIQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGHL 121 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ+ L+ Sbjct: 122 DDLAAVIILQDYLE 135 >gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328] gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328] Length = 148 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G +RIG+A D A +VR + + I + ++GLP N Sbjct: 14 GLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLSN 73 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + + + + + + +P + DERLT+V A+Q+L + + +D A Sbjct: 74 GELGTQARQIQKYTRRL-QKSLALPVEYVDERLTSVEAEQMLKGQKIPLSENKALIDRKA 132 Query: 141 AALILQEVLDR 151 AALILQ+ LD+ Sbjct: 133 AALILQQWLDQ 143 >gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49] Length = 149 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+AI + R A P L R+ + ELL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ L + NV + R+ +D Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVSWVDERYSSVEAEAGLRERNVRGRARVDMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera] Length = 679 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 15/132 (11%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG R GLA+S + F+ RP V K + + L+LL E + FIIGLP++ + Sbjct: 515 VDLGMSRTGLALS---KGFS-VRPLSVLKLRGQKLELQLLEIAGREEVDEFIIGLPVSDD 570 Query: 81 GSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 G E P+ + R+ + R +VY+ DE T+ A ++IDM S+ R Sbjct: 571 GKETPQSNKVRSVAGRLAARAAERGWRVYLQ----DEHGTSEEALSLMIDMGHSKSARQN 626 Query: 135 KVDSIAAALILQ 146 ++D+ AA ++L+ Sbjct: 627 RIDAYAAMMVLE 638 >gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM 13031] gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM 13031] Length = 143 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID GTKRIG+A SDP + FA P + R ++ E+L ++ I IIG PL Sbjct: 9 VIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGMLEEMLR---SDEIGRVIIGYPLG 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 NG F+ +++ + DE ++ A++IL SRK R +K + Sbjct: 66 GNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEKGRI 125 Query: 137 DSIAAALILQEVLD 150 DS AA ++L E L+ Sbjct: 126 DSAAACVLLTEYLE 139 >gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway 5J108-111] gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii CbuG_Q212] gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111] gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 141 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 15 PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 PNQ + ++ D G KRIG+A+ A+ L + ++ I T + + Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ KR Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118 Query: 133 IQKVDSIAAALILQEVL 149 Q +D+ AA LIL++ L Sbjct: 119 PQHLDNYAAKLILEQWL 135 >gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972] gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972] gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972] Length = 138 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis HAW-EB4] gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4] Length = 140 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73 ++ + D GTK IG+AI A RP L K V E+ + IT ++ Sbjct: 3 DKSVLGFDYGTKSIGIAIGQ--ELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVV 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+G+E R F N I + V DERLTT A+ L +M + Sbjct: 61 GLPLNMDGTEQEMTQRARKFA-NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTK 119 Query: 134 QKVDSIAAALILQEVLD 150 +VD+++A LI++ + Sbjct: 120 GQVDAMSAVLIVESYFE 136 >gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 138 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 ++D+G RIG+A SD A P + RKKV +++ ++ I EN ++ G+P ++ Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLVVVGIPKSL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136 +G E + R ++ + + + DER +TV A IL ++N + K+++ V Sbjct: 64 DGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121 Query: 137 DSIAAALILQEVLD 150 D +AA++ILQ LD Sbjct: 122 DKVAASIILQTYLD 135 >gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 143 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I ++D+G+K IGLA S + Q +L S++ N + ++G P Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131 NMN + G R + +D +Y F + DER TT A+ ILI N++R+K Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKNFNEDQIIKIDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLD 150 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLE 139 >gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3] gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3] Length = 149 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP + + D G+K IG+A A P + + L I II Sbjct: 8 KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+G+E + F N + + V DERLTT SA++ + ++ + Sbjct: 68 GLPLNMDGTEQYITQRAKKFA-NRLHGRFGVKIALQDERLTTASAKEFIFELGGYKALDK 126 Query: 134 QKVDSIAAALILQEVLDR 151 K+DS++AALIL+ + + Sbjct: 127 GKIDSVSAALILESWMSQ 144 >gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays] gi|194697900|gb|ACF83034.1| unknown [Zea mays] Length = 174 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +D+G+K +G+AISD R A P L R K + A + + ++ +IA F++G P Sbjct: 27 GLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFK 86 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 + G P + + + + + +P+ +WDE T+ + +L +N+ + Sbjct: 87 IYGQ--PCASAIQVSLAGELCKTGKLDDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKT 144 Query: 136 V-DSIAAALILQEVLDRIS 153 + D AA ILQ LD ++ Sbjct: 145 MTDKFAAVCILQGYLDNMN 163 >gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 107 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 +G+ RIG+AISDP FA FL + L LL I N+ +IGLP+ NG + Sbjct: 1 MGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLALL--IRKHNVKKVVIGLPIRTNGKK 58 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 + + + + F+ WDER TT AQ L D +S KK+ Sbjct: 59 DREADAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107 >gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302] gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302] Length = 144 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G KR GLA++D + A+ L + L +I E + +IG P Sbjct: 4 ILSIDYGKKRTGLAVTDSLQIIANG---LATVSTSSLIDYLKDYIAKEPVERIVIGRPTQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 +G + FV+ +P ++DER T+V A Q++ID V +K R + Sbjct: 61 PDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKENKGL 120 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQ+ + Sbjct: 121 IDEISATIILQDYM 134 >gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica W22703] Length = 140 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GTK IG+AI ++VT TA L SF + + Sbjct: 3 NRTIVAFDFGTKSIGVAIG---------------QEVTGTARALTSFKAQDGTPDWQKVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLKEWQPDLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQIALQDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L D R VD+ +A +IL+ D Sbjct: 107 NLFDSGGYRALDKGSVDAASAVIILESWFD 136 >gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str. 301] gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str. 2457T] gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046] gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227] gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str. 8401] gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A] gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5] gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC 3083-94] gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A] gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22] gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019] gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171] gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012] gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1] gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6 str. E2348/69] gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii ATCC 35469] gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1] gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026] gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43] gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9] gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str. 12009] gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str. 11368] gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str. 11128] gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli FVEC1412] gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088] gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302] gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 107-1] gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 198-1] gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1] gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 187-1] gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W] gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 145-7] gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143] gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280] gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299] gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9] gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T] gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227] gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A] gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5] gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94] gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A] gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22] gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019] gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171] gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012] gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1] gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469] gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1] gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026] gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43] gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11 str. 11368] gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2 str. 12009] gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H- str. 11128] gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017] gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088] gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli FVEC1412] gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302] gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 198-1] gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1] gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 187-1] gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 107-1] gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W] gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 145-7] gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T] gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W] gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC 74-1112] gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905] gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83] gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14] gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010] gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G] gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68] gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180] gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357] gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11] gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120] gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489] gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863] gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509] gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253] gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii ECD227] gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v] gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143] gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280] gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299] gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82] gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74] gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74] gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9] gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70] gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671] gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71] gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71] gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6] gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218] gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272] gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304] gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227] Length = 138 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103] gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103] gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis AJ13355] Length = 138 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+A+ A P + + T L++ + ++GLP Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P R F N + + + DERL+TV A+ L + R V Sbjct: 64 LNMDGTEQPLTARARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122 Query: 137 DSIAAALILQEVLD 150 DS +AA+ILQ+ + Sbjct: 123 DSQSAAIILQDWFE 136 >gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae NTUH-K2044] gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 138 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK IG+A+ A P P L + + + A I+GLPLNM+ Sbjct: 7 GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V + DERL+TV A+ L + R VDS + Sbjct: 67 GTEQPLTARARNFA-NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVVILESYFEQ 136 >gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1] gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1] Length = 138 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P L + T + +T A I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N + + V DERL+TV A+ L + R +VDS + Sbjct: 67 GTEQPLTARARKFA-NKLHGRFGVKIELHDERLSTVEARAGLFEHGGYRALNKGRVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str. REL606] gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50] gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)] gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str. REL606] gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli BL21(DE3)] Length = 138 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis] Length = 178 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 4/139 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 + +D+G + +GLA+S+ A P L+RK+ ++ +L + ++ F+IG P Sbjct: 24 LLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRFSLVGFVIGYP 83 Query: 77 LNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L + + + + FV + R + + +WDERLTT + + +L + + + Sbjct: 84 LPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKPLKIHPLQMKH 143 Query: 135 KVDSIAAALILQEVLDRIS 153 +D AA ILQ+ LD + Sbjct: 144 MMDKFAAVGILQDFLDNLQ 162 >gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718] gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718] Length = 138 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735] gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735] Length = 144 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G KR GLA++D + A+ L + L +I E + +IG P Sbjct: 4 ILSIDYGKKRTGLAVTDSLQIIANG---LATVSTSSLIDYLKDYIAKEPVERIVIGRPTQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 +G + FV+ +P ++DER T+V A Q++ID V +K R + Sbjct: 61 PDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKENKGL 120 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQ+ + Sbjct: 121 IDEISATIILQDYM 134 >gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. MG1655] gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073] gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. W3110] gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89] gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536] gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1] gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS] gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC 8739] gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr. DH10B] gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638] gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11] gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88] gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a] gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989] gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952] gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B] gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354] gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 119-7] gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1] gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 115-1] gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1] gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 116-1] gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1] gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1] gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1] gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1] gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 196-1] gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 185-1] gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1] gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1] gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 146-1] gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101] gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736] gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736] gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605] gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206] gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271] gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591] gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical Protein gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical Protein gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073] gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. MG1655] gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12 substr. W3110] gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89] gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536] gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1] gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS] gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739] gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. DH10B] gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638] gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11] gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989] gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88] gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a] gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82] gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952] gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1] gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15] gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042] gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354] gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034] gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 196-1] gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 185-1] gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1] gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1] gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1] gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1] gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1] gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 115-1] gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 116-1] gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1] gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 119-7] gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1] gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1] gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 146-1] gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101] gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146] gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407] gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1 str. NRG 857C] gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1] gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1] gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 153-1] gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3] gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431] gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327] gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1] gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520] gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482] gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252] gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007] gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1] gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167] gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86] gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736] gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605] gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206] gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271] gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591] gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 138 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays] gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays] Length = 235 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 11/143 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLAI GR PRP V R + + L LL + IIGLP++ Sbjct: 76 GVDLGDARTGLAI---GRGITFPRPLTVLRLRGQKLELALLDVARQQEADELIIGLPVSA 132 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137 +GSE P+ + R+ V + + + DE T+ A +I V + R K D Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192 Query: 138 SIAAALILQEVLDRISFLESSKG 160 + AA +IL+ F S +G Sbjct: 193 AYAAVMILKRY-----FTSSGRG 210 >gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From Escherichia Coli Length = 138 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis str. Paraca] gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 148 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G +RIG+A D A +VR + + I + ++GLP N Sbjct: 14 GLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLSN 73 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + + + + + + +P ++DERLT++ A+++L + + +D A Sbjct: 74 GELGTQARQIQKYTRRL-QKSLALPVEYFDERLTSIEAEEMLKGQKIPLSENKALIDRKA 132 Query: 141 AALILQEVLDR 151 AALILQ+ LD+ Sbjct: 133 AALILQQWLDQ 143 >gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734] gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734] Length = 155 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79 +D+GT RIG+AISDP A P V+ ++ ++ I EN + ++GLP+ + Sbjct: 19 GLDVGTVRIGVAISDPDCILATPVE-TVQATADDADVQRVAEICRENFVVEIVVGLPVAL 77 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G+ + F + + +P DER++T++A Q V+ KK +K+D Sbjct: 78 RGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGRKKIDQA 137 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 138 AAVHILQGWLD 148 >gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus PCC 7942] gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942] Length = 149 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P +D+G +RIG+A D +VR+ + + + +IG Sbjct: 2 PYYAALGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +M+GS G + T+ F + + + +P + DERLT+ A++++ S + Sbjct: 62 LPYSMDGSLGSQAKQTQRFA-TRLSKALQLPITYVDERLTSFEAEEMIKAEGRSPSRDKG 120 Query: 135 KVDSIAAALILQEVLD 150 +D AAALILQ+ LD Sbjct: 121 AIDRKAAALILQQWLD 136 >gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC 23834] gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC 23834] Length = 148 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D G RIG+A D AHP + + + + + + F++G Sbjct: 5 PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +GSE R F H + R +P + DERLT++ A ++L + +K+ Sbjct: 65 LPFSTDGSEHEMTRLARKFGHRLNGR-FGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC 700345] gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345] Length = 141 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73 ++ + D GTK IG+AI A RP L K V E+ + IT ++ Sbjct: 3 DKSVLGFDYGTKSIGIAIGQ--ELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVV 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+G+E R F N I + V DERLTT A+ L +M + Sbjct: 61 GLPLNMDGTEQEMTQRARKFA-NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTK 119 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 +VD+++A LI++ S+ E+ G Sbjct: 120 GQVDAMSAVLIVE------SYFENQYG 140 >gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum ATCC 51196] gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum ATCC 51196] Length = 146 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 1/129 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G +R+G+A+SD A P LVR Q L + ++G PL M+ Sbjct: 2 ALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYMS 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G P+ +AF + + +P WDERLTT A + L + + VD +A Sbjct: 62 GDISPQALKAQAFA-AWVREEFGLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQVA 120 Query: 141 AALILQEVL 149 A LIL L Sbjct: 121 AVLILDGFL 129 >gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae Sd197] gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11] gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185] gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11] gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185] gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B] gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158] gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158] Length = 149 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ L + NV + R+ +D Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVDMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str. K-12 substr. MG1655] Length = 180 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 49 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 108 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 109 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 167 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 168 AVIILESYFEQ 178 >gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 143 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I ++D+G+K IGLA S + Q +L S++ N + ++G P Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131 NMN + G R + +D +Y F + DER TT A+ ILI N++R+K Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKNFNKDQIIKIDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLD 150 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLE 139 >gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC 51142] gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp. ATCC 51142] Length = 143 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A + R+ Q +L + + + +IGLP +M+ Sbjct: 8 GLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVIGLPYSMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G + + F + + +P + DERLT+V A+ L + VD +A Sbjct: 68 GTIGFQAKKVQKFAKRL-STALELPIEYIDERLTSVEAETHLKSQKKYSRYNKGLVDRLA 126 Query: 141 AALILQEVLDR 151 A +ILQ+ LD+ Sbjct: 127 ATIILQQWLDQ 137 >gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C] gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C] Length = 137 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D GTKR G+A++DP + A ++ + L S++ +E ++ ++G P Sbjct: 4 IIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISF---LKSYMVSEPVSTIVLGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+ + + AF+ + + DER T+ A Q +I + +KKR +K V Sbjct: 61 MDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEKGRV 120 Query: 137 DSIAAALILQEVLDRIS 153 D I+A LILQ L+RIS Sbjct: 121 DQISATLILQAYLNRIS 137 >gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica PR426713P-I] gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica PR426713P-I] Length = 141 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 8/142 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID GTKR GLA++DP P + T L L+ ++ E + I+G P Sbjct: 4 ILAIDYGTKRTGLAVTDP----LQITPGALDTVPTHQLLNYLADYLGREKVETIILGKPT 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 M+ + + +A + + + DER T+V AQQ + + + +++R + Sbjct: 60 QMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRDKG 119 Query: 136 -VDSIAAALILQEVLDRISFLE 156 VD ++A +ILQ L+ +S L Sbjct: 120 LVDRVSATIILQSYLESLSMLH 141 >gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 ++D+G RIG+A SD A P + RKK+ +++ ++ I EN I+ G+P ++ Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKIK--SVKRIAEICKENDTNLIVVGIPKSL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136 +G E + R ++ + + + DER +TV A IL ++N + K+++ V Sbjct: 64 DGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121 Query: 137 DSIAAALILQEVLD 150 D +AA++ILQ LD Sbjct: 122 DKVAASIILQTYLD 135 >gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii F0264] gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii F0264] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 10/137 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLN 78 +D+G RIG+A SDP A + R V Q E+LS T+ I A GLP + Sbjct: 6 GLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNPVQRIKEILSDEGTKKIVA---GLPKS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135 ++G++ + FV + + + + DER TT A+ L N S+ K+R + Sbjct: 63 LDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYL--KNYSKKNGKERRKV 120 Query: 136 VDSIAAALILQEVLDRI 152 VD +AA++ILQ+ LDRI Sbjct: 121 VDMVAASIILQKYLDRI 137 >gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39] gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + + DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 EDL933] gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. Sakai] gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4113] gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4401] gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4501] gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4486] gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4196] gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4076] gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC869] gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC508] gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. EC4024] gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4206] gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4045] gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4042] gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4115] gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. TW14588] gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. TW14359] gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK2000] gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK966] gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str. CB9615] gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4196] gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4113] gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4076] gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4401] gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4486] gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4501] gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC869] gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC508] gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4206] gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4045] gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4042] gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4115] gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli] gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. TW14588] gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7 str. TW14359] gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str. CB9615] gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC1212] gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. G5101] gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H- str. 493-89] gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H- str. H 2687] gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7 str. USDA 5905] gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. LSU-61] gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str. 1044] gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str. 1125] Length = 138 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R K+DS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA 331] gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493] gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA 331] gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493] Length = 141 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 15 PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 PNQ + ++ D G KRIG+A+ A+ L + ++ I T + + Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P NM+GSE + R F + + +P DERLTT+ A++ + ++ KR Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKL-QMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118 Query: 133 IQKVDSIAAALILQEVL 149 Q +D+ AA LIL++ L Sbjct: 119 PQHLDNYAAKLILEQWL 135 >gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea ATCC 19718] gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 148 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 + + D G +RIG+AI + R AHP + + +T+ E ++ I ++GL + Sbjct: 12 VLAFDFGKRRIGVAIGEHELRMAHPLT-TIDQSMTRPRFEKIAELIEAWQPVLLVVGLSV 70 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+E R F + + + +P DER TTV A+ +L ++ V+ KK+ +D Sbjct: 71 HADGTEHEITRLCRRFARRL-EGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRPMLD 129 Query: 138 SIAAALILQEVLD 150 IAA ILQ D Sbjct: 130 QIAAQHILQTYFD 142 >gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084] gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084] Length = 137 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G R+G+A SD A P L ++V + + + G PL M Sbjct: 5 ALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRPLTMA 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G +GP+ I +P F DERL++ A++IL + S + +VD +A Sbjct: 65 GEDGPQADRVMGQARR-IATSCDLPLEFADERLSSQEAKRILREEGYSERDMRGRVDMVA 123 Query: 141 AALILQEVLD 150 A+L LQ LD Sbjct: 124 ASLFLQAWLD 133 >gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 146 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI +P P V K +LL + F++GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQ 146 DS AAAL++Q Sbjct: 125 ADSFAAALLIQ 135 >gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM 17393] gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM 17393] Length = 140 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 13/143 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A+SD + A+ T ELL+FI E + ++G Sbjct: 4 ILAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVGKEPVERILVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + FV + + +P + DER T+V A + + + + +K R Sbjct: 57 LPKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQN 116 Query: 135 K--VDSIAAALILQEVLDRISFL 155 K VD I+A +ILQ L+ F+ Sbjct: 117 KALVDEISATIILQSYLENKRFI 139 >gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10] gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10] Length = 149 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ L + NV + R + +D Sbjct: 70 HPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens CN-32] gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32] Length = 141 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ + D GTK IG+AI +++T +A LLS + I + Sbjct: 3 SKTVLGFDFGTKSIGVAIG---------------QEITASATPLLSLKAVDGIPNWDQIG 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E H R F N I+ K V V DERLTT A+ Sbjct: 48 DLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L ++ + +VD+++A LI++ + Sbjct: 107 RLFELGGFKALTKGQVDAVSAVLIIESYFE 136 >gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50] gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50] Length = 143 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 7/139 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I ++D+G+K IGLA S + Q +L S++ N ++G P Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131 NMN + G R + +D +Y F + DER TT A+ ILI N++R+K Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKNFNKDQIIRIDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLD 150 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLE 139 >gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2] Length = 138 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R K+DS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 110-3] gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263] Length = 138 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + + DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium Broad-1] gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium Broad-1] Length = 156 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 63/135 (46%), Gaps = 8/135 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFIIGL 75 +D G RIG+A SDP A P L K + L L I E + ++GL Sbjct: 8 GLDPGDARIGVARSDPTGFLATP---LETVKKGRGDLARLQAIVAEIGEESTMLEVVVGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++ G E P R F ++ R VP DERLTTVSA+ +L D + R Sbjct: 65 PRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDRRAV 124 Query: 136 VDSIAAALILQEVLD 150 VD AA +ILQ LD Sbjct: 125 VDMAAAVVILQHALD 139 >gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus succinogenes 130Z] gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z] Length = 140 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 31/147 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 + + D GTK IG A+ + +T TA L +F + I + Sbjct: 5 VIAFDFGTKSIGCAVG---------------QSITGTAQSLPAFKAQDGIPDWADIEKCL 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+G+E R F H + R V + DERLTT A+ + Sbjct: 50 KEWKPDMVVVGLPLNMDGTEQDLTRRARKFGHRLNGR-FGVKVAWQDERLTTTQARTEIF 108 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 + R + KVDSI+A LIL+ + Sbjct: 109 ERGGYRALKKGKVDSISACLILESWFE 135 >gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 144 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N + S D GTK IG+AI + P + K ++ + I I+GL Sbjct: 5 NNLLISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYIIVGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GS + F + K ++P + DERLTT+ A+ +L + + + Sbjct: 65 PLNMDGSYQTSTIKAKKFAKQL-RNKFFMPVMMHDERLTTIEAKSVLFKKYGYKGLKKKL 123 Query: 136 VDSIAAALILQEVLDRISF 154 +DS +A +IL ++ I F Sbjct: 124 IDSESAVIILDSWMNSIYF 142 >gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4] gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4] gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169] gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis 46P47B1] gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis 103P14B1] gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1] gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis 12P80B1] gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8] gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7] gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72] gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E] gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis 101P30B1] Length = 158 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D G K++G+A+ + A P L LL I I ++GLPLNM+ Sbjct: 9 ALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNMD 68 Query: 81 GSEG---PRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G+E R H R H + +R+ V +DERL++ A+ I +D N + + Sbjct: 69 GTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALD-NGWIASSSEPI 127 Query: 137 DSIAAALILQ 146 D IAA L+L Sbjct: 128 DDIAACLLLD 137 >gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1] gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1] gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200] Length = 141 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 31/149 (20%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF----- 71 + + D GTK IG+AI +++T +A LLS + I + Sbjct: 4 KTVLGFDFGTKSIGVAIG---------------QEITASATPLLSLKAVDGIPNWDQIGD 48 Query: 72 ----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 ++GLPLNM+G+E H R F N I+ K V V DERLTT A+ Sbjct: 49 LIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKAR 107 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L ++ + +VD+++A LI++ + Sbjct: 108 LFELGGFKALTKGQVDAVSAVLIIESYFE 136 >gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria AMMD] gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria MC40-6] gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD] gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6] Length = 149 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+ Sbjct: 13 GFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ L + NV + R + +D Sbjct: 70 HPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor NM305] gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor NM305] Length = 140 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GT IG A+ A P + ++ I ++GLPLN Sbjct: 5 VLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F N ++ + +P DERLTTV A+ + + + KVD+ Sbjct: 65 MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKVDA 123 Query: 139 IAAALILQEVLDRIS 153 I+A LIL+ + S Sbjct: 124 ISACLILESWFENQS 138 >gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC 23685] gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC 23685] Length = 140 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 31/145 (21%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GT+ IG AI +++T +A L SF E I + Sbjct: 8 AFDFGTRSIGCAIG---------------QELTGSARPLQSFKANEGIPDWQQIEKVLRE 52 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLPLNM+GSE P R F N + + V DERL+TV A+ L Sbjct: 53 WQPDLVVVGLPLNMDGSEQPLTQLARKFA-NRLHGRFGVQIALHDERLSTVEARAHLFAD 111 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 R +VD+ +AALIL+ D Sbjct: 112 GGYRALEKGRVDAASAALILESWFD 136 >gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum ATCC 33209] gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 169 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGLPLNM 79 +D+GT R+G+A+ DP A P + R + L ++ E A I +GLP + Sbjct: 14 GVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYVGLPQTL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 G+E RA + D V DERL++VSA Q L ++ +++ + Sbjct: 74 RGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAGREQRKV 133 Query: 136 VDSIAAALILQEVLDRISFLESSKG 160 +D +AAA ILQ L+ +E S+G Sbjct: 134 IDQVAAAGILQHALE----MEKSRG 154 >gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC 6803] gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803] Length = 152 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 12/144 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A +VR Q ++ + N+ ++GLP M Sbjct: 9 GLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTMA 68 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK----- 135 G G + + F + + ++++P + DERL++V A+ L +KR Sbjct: 69 GEIGSQAKQVQKFARRVAE-QLHLPLEYMDERLSSVEAENQL-----KARKRFSSYDKGL 122 Query: 136 VDSIAAALILQEVLD-RISFLESS 158 +D AA +ILQ+ LD R S L+ Sbjct: 123 IDQQAAEIILQQWLDLRRSHLQEG 146 >gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM 20707] gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM 20707] Length = 141 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 8/142 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I +ID GTKR GLA++DP P + T L L+ ++ E + ++G P Sbjct: 4 ILAIDYGTKRTGLAVTDP----LQITPGALDTVPTHQLLNYLADYLGREKVETIVLGKPT 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 M+ + + +A + + + DER T+V AQQ + + + +++R + Sbjct: 60 QMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRDKG 119 Query: 136 -VDSIAAALILQEVLDRISFLE 156 VD ++A +ILQ L+ +S L Sbjct: 120 LVDRVSATIILQSYLESLSMLH 141 >gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2] gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFI 72 N I +ID GTK IG AI+D P ++T L+ +L + ENI + Sbjct: 5 NSKILAIDFGTKIIGTAINDINLNLCLPYC-----EITNNELKFKKILEIVEEENIKEIV 59 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 IG P N R F + + + + + F+DE +T S+++ L++ NV Sbjct: 60 IGFPKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTS 119 Query: 131 KRIQKVDSIAAALILQEVL 149 K + D IAA++IL+ L Sbjct: 120 KLKKNKDMIAASIILENYL 138 >gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641] gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum DSM 15641] Length = 140 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D+G R G+AISDP R A P L +V A + + GLPL Sbjct: 3 VLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLPLT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++GS G + RA + D +P F DERL++ A+++L + ++ + K+D Sbjct: 63 LSGSSGGQAQRIRAQAQQIAD-TSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKIDM 121 Query: 139 IAAALILQEVLDR 151 IAA++ LQ LDR Sbjct: 122 IAASIFLQAWLDR 134 >gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans ATCC 17616] gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans ATCC 17616] gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC 17616] gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC 17616] Length = 149 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+AI + R A P L R+ + ELL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ + + NV + R +D Sbjct: 70 HPDGTPHDMTQQAKRF-GNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTDMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1] gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 11V1-d] gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 09V1-c] gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 03V1-b] gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 01V1-a] gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 2503V10-D] gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 3008A-a] gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2062A-h1] gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2052A-d] gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2053A-b] gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC 55195] gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 143-D] gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B] gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 1401G] gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 11V1-d] gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 09V1-c] gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 03V1-b] gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 01V1-a] gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 2503V10-D] gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2053A-b] gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2052A-d] gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2062A-h1] gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 3008A-a] gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC 55195] gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 143-D] gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B] gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 1401G] Length = 143 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 11/137 (8%) Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 +D+G+K +G+A+SD G + + + + + E ++ F++GLP N Sbjct: 5 GLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGLPKN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133 M+G+ G + + K +P + DERLTT+ A++IL++ V+RKK I Sbjct: 65 MDGTCGESAQRCLDYGERL-KAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARKKII 123 Query: 134 QKVDSIAAALILQEVLD 150 D +AA LILQ L+ Sbjct: 124 ---DQMAAVLILQNFLE 137 >gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii ATCC 14266] gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii ATCC 14266] Length = 174 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 10/148 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75 +D+GT RIG+A+S A P + R K ++ ++ L++ IT N+ I+GL Sbjct: 21 GVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNNVVEVIVGL 80 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++ G+ V + + R ++ +P DERL+TV A Q L VS K Sbjct: 81 PRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRASGVSEKS 140 Query: 132 RIQKVDSIAAALILQEVLD-RISFLESS 158 + +D AA ILQ LD R ++L + Sbjct: 141 GRKIIDQAAAVEILQSWLDGRTNYLHRT 168 >gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC 23330] Length = 151 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 15 PNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 P Q A + D G +RIG+A + AHP + + ++ I + ++ Sbjct: 5 PTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPSCLVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132 GLP +++G+E R F + R + V+W DERL++V A+++L V +K+ Sbjct: 65 GLPSHLDGTEHEITQLARKFGRRLHGR--FALPVYWVDERLSSVYAEELLRQAQVFGRKQ 122 Query: 133 IQKVDSIAAALILQEVLD 150 K+D +AA ILQ D Sbjct: 123 KAKLDQVAAQAILQSFFD 140 >gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588] gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588] Length = 136 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 21/141 (14%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73 I +ID G KR GLA++DP + L+ +T A L ++ E + F+I Sbjct: 4 ILAIDYGKKRTGLAVTDPLQ--------LIASGLTTVATHDLIPYLKKYLAQEAVELFLI 55 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNM-IDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRK 130 G P N++G H+T V + I K + VP DER T+ A Q +ID + +K Sbjct: 56 GEPKNLDGGA---THATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKK 112 Query: 131 KRIQK--VDSIAAALILQEVL 149 R K VD I+A +ILQE L Sbjct: 113 DRQNKGLVDEISATIILQEYL 133 >gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2M] gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2] gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD1] gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD1] gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2] gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2M] Length = 149 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+AI + R A P L R+ + ELL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ + + NV + R +D Sbjct: 70 HPDGTPHDMTQQAKRF-GNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARADMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219] gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219] Length = 140 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78 +DLG+ G++ S+ G AH + K + ++L+ I E ++G PL Sbjct: 6 GLDLGSVTCGVSASETGL-IAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVLGYPLL 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG GPR + F + + +P DER TTV A++IL+ ++SRKKR +K+D Sbjct: 65 LNGDVGPRAQLSEEFKEVLE-EECGLPVHLMDERFTTVEAEEILLQADISRKKRKKKIDQ 123 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LDRI Sbjct: 124 LAAVQILQYYLDRIG 138 >gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145] gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145] Length = 147 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I + D GT+++G+++ A+P P K ELL + + F++GLP Sbjct: 8 QTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLP 67 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+ SE R F + + ++ DERLTT A+ L + + Sbjct: 68 LNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREARDELDHYQAQGRGKKLSA 126 Query: 137 DSIAAALILQ 146 DSIAAAL+++ Sbjct: 127 DSIAAALLIE 136 >gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216] gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216] Length = 137 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR G+A+SDP R A + K + + L + +++ +IG P+ Sbjct: 4 ILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERW---LAQYFAANDVSTIVIGKPMQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135 M+G+ + R+ Y VF+DER T+V A + +++ + + R K Sbjct: 61 MSGAPSETWRYVEPLAARL--RRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDKA 118 Query: 136 -VDSIAAALILQEVLD 150 VD I+A +ILQ ++ Sbjct: 119 LVDKISATIILQGYME 134 >gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 137 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT IG A+ A P + ++ I ++GLPLN Sbjct: 5 ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSE P + F N ++ + + DERLTTVSA+ + + + + KVDS Sbjct: 65 MDGSEQPLTQRAKKFA-NRLNGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123 Query: 139 IAAALILQEVLD 150 I+A LIL+ + Sbjct: 124 ISACLILESWFE 135 >gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A] gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A] Length = 140 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTKR GLA +DP + A L +V L + E + F++G PL + Sbjct: 6 GIDFGTKRTGLACTDPLKIIASGLKNLSTPEVIPF---LKKYCEMEEVDTFVVGKPLQKD 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 G+ + F+ + ++ +DER T+ A Q +I+ + +K+R K +D Sbjct: 63 GTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADKGMIDQ 122 Query: 139 IAAALILQEVLD 150 ++A LILQ LD Sbjct: 123 VSATLILQSYLD 134 >gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. F] Length = 142 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G+K +G+A D + A P + ++ + + + SF F+IG Sbjct: 5 ALDVGSKTLGIATGDGEFKIASPYCVISFNQYDFKQCLAELKEKTASFFYD---FKFVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR + Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120 Query: 135 KVDSIAAALILQEVLD 150 K+D +AA +ILQ D Sbjct: 121 KIDKLAAFVILQSFFD 136 >gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170] gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170] Length = 154 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 13/139 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF----ITTENIAAFIIG 74 I ++D G R G+A++D + A T +EL+SF ++ EN+ F++G Sbjct: 22 IVALDYGKVRTGIAVTDELQLIASGL-------TTVKTVELISFLKKYVSEENVEKFVVG 74 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P M+ + + F+ ++ + +P DER T+ A Q +ID + +K+R Sbjct: 75 EPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIKKKQRKN 134 Query: 135 K--VDSIAAALILQEVLDR 151 K VD I+A LILQ L++ Sbjct: 135 KALVDEISATLILQAYLNK 153 >gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799] gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799] Length = 138 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GTK IG+A+ A P + + E+ + + ++GLPLN Sbjct: 4 IMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGLPLN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G++ + R F + + R + + DERLTTV A+ L + R + +VD+ Sbjct: 64 MDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQVDA 122 Query: 139 IAAALILQEVLDRI 152 +AAALIL+ + + Sbjct: 123 LAAALILESYFETL 136 >gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202] gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202] Length = 140 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GT IG A+ A P + ++ I ++GLPLN Sbjct: 5 VLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F N ++ + +P DERLTTV A+ + + + KVD+ Sbjct: 65 MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKVDA 123 Query: 139 IAAALILQEVLDRISFLESSKG 160 I+A LIL+ S+ E+ G Sbjct: 124 ISACLILE------SWFENQTG 139 >gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC 7002] gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday junction resolvase [Synechococcus sp. PCC 7002] Length = 144 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 17 QPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +P+A++ D+G KRIG+A D A + R + + +I +I ++G Sbjct: 2 KPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP M+GS G + T+ F + + +P + DERLT+V A+ L +++ Sbjct: 62 LPYAMDGSLGKQAKQTQKFARKLAE-AFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD AA +ILQ+ L+ Sbjct: 121 LVDQRAAQIILQQWLE 136 >gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4] gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7] gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3] gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4] gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7] gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3] Length = 141 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIG 74 + + D GTK IG+AI + A P L K V E+ I ++G Sbjct: 4 KTVLGFDFGTKSIGVAIGQ--QITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+E H R F N ++ K V V DERLTT A+ L ++ + Sbjct: 62 LPLNMDGTEQEMTHRARKFA-NRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKG 120 Query: 135 KVDSIAAALILQEVLD 150 +VD+++A LI++ + Sbjct: 121 QVDAVSAVLIVESYFE 136 >gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1] gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter aurescens TC1] Length = 196 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 9/137 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGLPLNM 79 +D+GT R+GLA+ DP A P + R + + +L + A I +GLP M Sbjct: 17 GVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFVGLPRTM 76 Query: 80 NGSEGPRVHSTRA------FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G E R + A V ++ + VP DERL+TV+A + L +S K Sbjct: 77 KGEE--RASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSSKNHR 134 Query: 134 QKVDSIAAALILQEVLD 150 + VD +AAA ILQ +D Sbjct: 135 KVVDQVAAAGILQHAID 151 >gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis Z2491] gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 151 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G++ H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 123 SVLDQVAAQAILHGFFE 139 >gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 139 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 I SID G KR GLA++DP + + T + ++L F+ E + I+G Sbjct: 4 ILSIDYGKKRTGLAVTDPMQ-------IIANGLTTVSTVDLWDFLQNYCKKEGVERIIMG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NG + F + +P ++DER T+V A + +ID V +K R + Sbjct: 57 KPTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRRE 116 Query: 135 K---VDSIAAALILQEVL 149 VD ++A +IL++ + Sbjct: 117 NKGLVDEVSATIILEDWM 134 >gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. R(low)] gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. R(low)] gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. R(high)] Length = 142 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G++ +G+A D + A P + R+ + + + SF F+IG Sbjct: 5 ALDVGSRTLGIATGDGEFKIASPYCVISFNQYDFRQCLAELKEKTASFFYD---FKFVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR + Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120 Query: 135 KVDSIAAALILQEVLD 150 K+D +AA +ILQ D Sbjct: 121 KIDKLAAFVILQSFFD 136 >gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis 053442] gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis 053442] Length = 151 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G++ H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 123 SVLDQVAAQAILHGFFE 139 >gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542] gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM 10542] Length = 167 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--------TALELLSFITTE-NIAAF 71 +D+G+ R+G+A+SDP A P L R VT T L L+ E + Sbjct: 14 CVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAEQVVERGVKVV 73 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLP +++G+EG S RA+ + VP DER++TV+A Q L + +K Sbjct: 74 YVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQALHASGRAGRK 133 Query: 132 RIQKVDSIAAALILQEVLD 150 VD +AA +ILQ LD Sbjct: 134 HRAVVDQVAAVVILQSALD 152 >gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis MC58] gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis FAM18] gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha14] gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis ATCC 13091] gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha14] gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha153] gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha275] gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis ATCC 13091] gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis alpha710] gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568] gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis OX99.30304] gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190] gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399] gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579] gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis ES14902] gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385] gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136] gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 151 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G++ H +R F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 123 SVLDQVAAQAILHGFFE 139 >gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7 single-cell isolate TM7c] Length = 134 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A++D G + A P L +V T +E +L EN ++G P N Sbjct: 7 CLDVGEKRIGVAVADLGVKIAIP---LTTIEVDGTEIEQILRLYGRENARTLVVGYPRNQ 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137 G + FV + + Y+ F DE LT+V A+Q L SR + K +D Sbjct: 64 QGETTAQTVFVEEFVKPL---EEYINIEFQDESLTSVQAEQRL----KSRGQNYTKGDID 116 Query: 138 SIAAALILQEVLD 150 S AA +ILQ+ ++ Sbjct: 117 SEAATIILQDYME 129 >gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069] gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069] Length = 145 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 27/153 (17%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS---------- 61 +L Q D G KR+G+A VR +++ AL +L+ Sbjct: 3 TLTTAQRYLCFDFGEKRLGVATG-------------VRTQMSSQALTVLAVTNDQPDWKL 49 Query: 62 ---FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 I N+ AF++GLPLNM+ SE R F N + + +P DERL++ Sbjct: 50 IENLIREWNVEAFVVGLPLNMDDSEQELTQKARKFA-NRLHGRFGLPTHLHDERLSSAEV 108 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 + L ++ +K + +D+ AA LIL+ ++ Sbjct: 109 KDYLYEIGGYKKLKQNPIDAYAAELILKSFFEQ 141 >gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 143 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGL 75 P+ ID G +RIG+A+ G P+ +R + + I E A ++GL Sbjct: 7 PLLGIDFGERRIGIAVL--GESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+M+GSEG V R F ++ R+ +P + DERL++ +A +L + +S KKR + Sbjct: 65 PLHMDGSEGFMVGRVRKFAESL-QRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGRL 123 Query: 136 VDSIAAALIL 145 +D AA IL Sbjct: 124 LDQAAACEIL 133 >gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis subsp. sepedonicus] gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 161 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 ++D+G RIGLA SDP A P + R + + + E + ++GLPL + Sbjct: 8 AVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLAL 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G F + D + DERL+TVSAQ L +K+ +D + Sbjct: 68 SGRATASTDDAEGFARRLAD-ATEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQV 126 Query: 140 AAALILQEVLD 150 AA +ILQ L+ Sbjct: 127 AAVIILQHALE 137 >gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca volvulus] Length = 136 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+G K+IG+A SD + A RK +++ L L+ + EN A + +IGLPL Sbjct: 2 CLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKD-LGYLNRVFKENEAGSVVIGLPLET 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 N + F M+ +K V DE L+T A L VS K + D I Sbjct: 61 NRKSSEWYETIIQFATKMV-KKYKVNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119 Query: 140 AAALILQEVLDRISFLE 156 +A +ILQ LD+I+ ++ Sbjct: 120 SACIILQRTLDKINAIK 136 >gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis IP 32953] gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis PB1/+] gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia pseudotuberculosis IP 32953] gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis PB1/+] Length = 140 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GTK IG+AI ++VT TA L +F + + Sbjct: 3 NRTIIAFDFGTKSIGVAIG---------------QEVTGTARALTAFKAQDGTPDWQQVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLKEWQPNLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQIALQDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L D R VD+ +A +IL+ D Sbjct: 107 NLFDRGGYRALDKGSVDAASAVIILESWFD 136 >gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37] gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37] Length = 145 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 31/159 (19%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + LK + D GTK IG+A + +T TA L + + I Sbjct: 1 MTEPLKSPSNLLGFDFGTKSIGVATG---------------QMITATAQPLSAIKANDGI 45 Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113 + ++GLPLNM+GSE P + F N ++ + V DERL Sbjct: 46 PNWDIVEKVIRDWMPDLIVVGLPLNMDGSEQPITQRAKKFA-NRLNGRFGVKVALQDERL 104 Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 TT SA++ + + K+DS++AALIL+ ++ Sbjct: 105 TTASAKEFIFTHGGYKALEKGKIDSVSAALILESWMENF 143 >gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4] gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4] Length = 137 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G R+G+A+SD A P L ++V A + + GLP + Sbjct: 3 VVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLPKS 62 Query: 79 MNGSEGPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G+ G + T+ H I +P F DERL++ A++IL K+ +D Sbjct: 63 LDGACGAQAEKITQQAQH--IAACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHID 120 Query: 138 SIAAALILQEVLD 150 IAA+L LQ LD Sbjct: 121 MIAASLFLQAYLD 133 >gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens DSM 45100] Length = 192 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+GT RIGLA+SDP A P + + ++ + + IIGLP+ + Sbjct: 45 GIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVVEVIIGLPVALR 104 Query: 81 GSEGPRVHSTRAFV---HNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 G+ +AF H+ + ++ + +P DER++TV+A + V+ KK ++ Sbjct: 105 GNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHASGVNVKKGRKR 164 Query: 136 VDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 165 IDQAAAVHILQGWLD 179 >gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10] gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar Microtus str. 91001] gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua] gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516] gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides F] gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125] gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis IP 31758] gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola] gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. F1991016] gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. IP275] gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1] gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis YPIII] gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92] gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A] gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. India 195] gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516] gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27] gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003] gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10] gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Yersinia pestis biovar Microtus str. 91001] gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516] gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua] gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F] gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125] gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia pseudotuberculosis IP 31758] gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola] gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. IP275] gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. F1991016] gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. B42003004] gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis YPIII] gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516] gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. India 195] gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A] gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004] gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038] gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27] gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003] gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 140 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GTK IG+AI ++VT TA L +F + + Sbjct: 3 NRTIIAFDFGTKSIGVAIG---------------QEVTGTARALTAFKAQDGTPDWQQVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLKEWQPNLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQVALQDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L D R VD+ +A +IL+ D Sbjct: 107 NLFDRGGYRALDKGSVDAASAVIILESWFD 136 >gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627] gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627] Length = 138 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00] gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Lawsonia intracellularis PHE/MN1-00] Length = 142 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID GTK G+A+SD FA P+ ++ + ++L+ I E+ A ++GLP+ + Sbjct: 5 AIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLFD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSI 139 SE R F+ + K+ +P E L++ A+ L + RK +I+ V D Sbjct: 65 NSETLITRQVRNFIKRL-KHKIMLPVFLMKEILSSYEAKLDLQSVGY-RKNKIKSVLDQQ 122 Query: 140 AAALILQEVLDR 151 AA ILQ LD+ Sbjct: 123 AAVRILQSFLDQ 134 >gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp. JA-3-3Ab] gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. JA-3-3Ab] Length = 159 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D+G +RIG+A SD A + R+ + + ++ ++I ++G+PL +G Sbjct: 19 LDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLADG 78 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 S G + + FV + V +P V +E L+TV A+ L + K + +D +A Sbjct: 79 SVGSQARKVQRFVR-ALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQSA 137 Query: 142 ALILQEVLDRISFLESSKG 160 A+ILQ LD + +SSK Sbjct: 138 AVILQTWLDERRYSQSSKA 156 >gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma proteobacterium HTCC2143] gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma proteobacterium HTCC2143] Length = 153 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IGLAI A+P L K ++ I +IGLPLN Sbjct: 14 VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS + F N + + +P DERL++ A+ +I SR + VDS Sbjct: 74 MDGSFSELSRRAKKFA-NRLHGRFGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132 Query: 139 IAAALILQEVL 149 +AA +IL+ L Sbjct: 133 LAAKIILESWL 143 >gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707] gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani AFC27] gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707] gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani AFC27] Length = 152 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 15 PNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 P++P + D G + IG+A+ A+P L + ++ I N I Sbjct: 10 PSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKK 131 +GLPLNM+ SE + R F H + R Y V W DERL+TV A++ L ++ S Sbjct: 70 VGLPLNMDQSEQFLTKAARRFGHRLHGR--YGLAVEWVDERLSTVEARERL-NIKSSASG 126 Query: 132 RIQKVDSIAAALILQEVL 149 R Q +D +AA ILQ L Sbjct: 127 RRQGIDQMAAQCILQTWL 144 >gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3] gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3] Length = 138 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK IG+A A P P L + + + A I+GLPLNM+ Sbjct: 7 GFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V + DERL+TV A+ L + R VDS + Sbjct: 67 GTEQPLTARARNFA-NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVVILESYFEQ 136 >gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii ATCC 27126] Length = 143 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKV-TQTALELLSFITTENIAAFII 73 N+ + + D GTK IG+A+ A P L R + T +E L I ++ Sbjct: 6 NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIV--VV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 GLPLNM+G+E R F + + R KV V DERLTT A+ +L ++ +K Sbjct: 64 GLPLNMDGTEQEMTQRARKFANRLHGRFKVAVDTC--DERLTTTDAKAMLFELGGYKKLT 121 Query: 133 IQKVDSIAAALIL 145 KVDS++A +I Sbjct: 122 KDKVDSVSACVIF 134 >gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1] gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1] Length = 159 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 15 PN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 PN + + D GT RIG+AI A P L + + + F+ Sbjct: 18 PNIAKTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFV 77 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+GSE R F + R P+ DERL++ A+ +I R + Sbjct: 78 VGLPLNMDGSENEMCQRARKFAKRLHGR-YNRPYHMMDERLSSYDAKGQVIAQGGHRNFK 136 Query: 133 IQKVDSIAAALILQ 146 VD +AA LI++ Sbjct: 137 ENSVDGLAAQLIIE 150 >gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 140 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GTK IG AI +++T TA L +F + + Sbjct: 3 NRTIIAFDFGTKSIGAAIG---------------QEITGTARALAAFKAQDGTPDWQKIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+GSE P R F N + + V DERL+TV A+ Sbjct: 48 KLLKEWQPDLVVVGLPLNMDGSEQPLTERARKFA-NRLHGRFGVKIDLHDERLSTVEARS 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D R VDS +A +IL+ ++ Sbjct: 107 HLFDRGGFRALDKGSVDSASAVVILESWFEQ 137 >gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM 265] gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM 265] Length = 142 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTKRIGLA++DP R FA P R+ + Q ALE + + IA ++G PL+ Sbjct: 6 LVGIDYGTKRIGLAVADPLRIFARPVGTFSREGL-QGALEEIE--RQDGIATLVVGYPLS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 G F+ + + V DE ++ A IL SRK R +K + Sbjct: 63 SGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKKGRL 122 Query: 137 DSIAAALILQEVLDRIS 153 D+ AA ++L L+ S Sbjct: 123 DTAAACVLLTRYLEESS 139 >gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus ATCC 53653] gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus ATCC 53653] Length = 124 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 41/80 (51%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 +IGLP ++NG EGP R F + R V DER+TTV+A L VS K Sbjct: 28 VVIGLPRSLNGREGPAAAKVRTFARELARRVQPVSVRLVDERMTTVTAAHGLRASGVSSK 87 Query: 131 KRIQKVDSIAAALILQEVLD 150 K VD AA +ILQ L+ Sbjct: 88 KGRSVVDQAAAVVILQSALE 107 >gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602] gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602] Length = 142 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ + + D GTK IGLAI ++VT TA L SF + + Sbjct: 3 NRTVFAFDFGTKSIGLAIG---------------QEVTGTARPLTSFKAQDGTPDWQKIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLKEWLPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVQVELHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D R VD+ +A +IL+ ++ Sbjct: 107 DLFDRGGFRALDKGSVDAASAVIILESWFEK 137 >gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis MED134] gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis MED134] Length = 163 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR G+A++D + A + K + + L +++ E + A +IG P Sbjct: 31 IIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKF---LATYLAEEKVEAMVIGEPKR 87 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN F ++ + + + DER T+ A Q +ID + +KKR K V Sbjct: 88 MNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIGKKKRQNKALV 147 Query: 137 DSIAAALILQEVL 149 D I+A +ILQ+ L Sbjct: 148 DQISATIILQDYL 160 >gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis ATCC BAA-1200] gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis ATCC BAA-1200] Length = 153 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G KRIG+A AHP L Q + + I ++G Sbjct: 8 PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E R F + +R +P F DER T++ A+ +L + V +K+ Sbjct: 68 LPVHSDGTEHELTRLARKFGRRLHER-FALPVYFADERHTSLLAESLLAEAQVFGRKQKS 126 Query: 135 KVDSIAAALILQEVLD 150 +DS+AA +IL + D Sbjct: 127 VLDSVAAQVILFDFFD 142 >gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2] gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2] Length = 146 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 30/146 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-------------- 66 S DLGTK G AISD +++ ALE + F+ + Sbjct: 5 SFDLGTKTCGFAISDI-------------LEISANALETIRFVENDFNAVIVKVKEIIKM 51 Query: 67 ---NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 +I AF++G PL NGS+ R F + + + DE +T+ AQ+IL Sbjct: 52 YQNSIDAFVLGYPLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILK 111 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149 D +S KK K D+++A +IL + L Sbjct: 112 DAKLSNKKTKSKKDTVSAVIILNDFL 137 >gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684] gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684] Length = 133 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 10/134 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D G+ R G A+SDP A P + R + L++ + + ++GLPL Sbjct: 3 VLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLPLG 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G++ + RAF + + +P +DER TTV A+++ + D Sbjct: 63 LSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRESED 113 Query: 138 SIAAALILQEVLDR 151 S AAA++L+ L R Sbjct: 114 SRAAAVLLEGWLVR 127 >gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 143 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG+A+ A P P L + + ++GLPLN Sbjct: 9 VLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGLPLN 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F N + + V DERLTT A+ +L ++ +K KVDS Sbjct: 69 MDGTEQEMTQRARKFA-NRLHGRFRVAVETCDERLTTTDAKSMLFELGGYKKLTKDKVDS 127 Query: 139 IAAALIL 145 ++A +I Sbjct: 128 VSACVIF 134 >gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC 29453] gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC 29453] Length = 154 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G RIG+A + AHP + + + + + IT ++GLP++ + Sbjct: 17 AFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVGLPVHAD 76 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E R F H + + + +P + DER +++ A+++L V KK +D +A Sbjct: 77 GTEHEVTALARKFGHRL-NARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKAVLDQVA 135 Query: 141 AALILQEVLD 150 A ILQ D Sbjct: 136 AQAILQSFFD 145 >gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis 29755] gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis 29755] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 31/153 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 +Q + + D GT IG A+ + +T TA L +F + I + Sbjct: 2 SQTVLAFDFGTNSIGCAVG---------------QSITGTAQGLSAFKAQDGIPNWEQIG 46 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P + F + R +P DERLTTV A+ Sbjct: 47 KVIAQWQPDLLVVGLPLNMDGTEQPLTQRAKKFAKRLNGR-FNLPVELQDERLTTVEAKS 105 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + + + KVD+I+A LIL+ ++ S Sbjct: 106 EIFTRGGFKALKKGKVDAISACLILESWFEQQS 138 >gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+G K+IG+A SD + A R+ +++ L L+ + EN A + +IGLP + Sbjct: 2 CLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKD-LGYLNRVLKENEAGSMVIGLPFTI 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--IDMNVSRKKRIQKVD 137 + E F + +I +K V DE L+T A L +++++ K+I D Sbjct: 61 DEQETEWCKVIIQFANKII-KKCKVHIYLQDESLSTSLATHALKITGISITKSKKID--D 117 Query: 138 SIAAALILQEVLDRIS 153 IAA +ILQ LD+I+ Sbjct: 118 KIAACIILQRTLDKIN 133 >gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146] gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 140 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 31/147 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GT+ IG AI +++T +A L SF + + + Sbjct: 6 ILAFDFGTRSIGCAIG---------------QELTGSARPLQSFKANDGVPDWQQIEKVL 50 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+GSE P R F N + + V DERL+TV A+ L Sbjct: 51 REWQPDLVVVGLPLNMDGSEQPLTQQARKFA-NRLHGRFGVQIALQDERLSTVEARAHLF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 R +VD+ +AALIL+ + Sbjct: 110 AGGGYRALEKGRVDAASAALILESWFE 136 >gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans WP3] gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans WP3] Length = 140 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73 ++ + D GTK IG+AI + A RP L K V E+ + IT ++ Sbjct: 3 SKTVLGFDYGTKSIGIAIGQ--QLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVV 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+G+E + F N ++ + V V DERLTT A+ L +M + Sbjct: 61 GLPLNMDGTEQDITLRAKKF-GNRLNGRFGVKVVTQDERLTTADAKARLFEMGGYKALTK 119 Query: 134 QKVDSIAAALILQEVLD 150 +VD+++A LI++ + Sbjct: 120 GQVDAMSAVLIIESYFE 136 >gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis MR-1] gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis MR-1] Length = 141 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIG 74 + + D GTK IG+A+ + A P L K V E+ I ++G Sbjct: 4 KTVLGFDFGTKSIGVAVGQ--QITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+E H R F N ++ K V DERLTT A+ L ++ + Sbjct: 62 LPLNMDGTEQEMTHRARKFA-NRLNAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKG 120 Query: 135 KVDSIAAALILQEVLD 150 +VD+++A LI++ + Sbjct: 121 QVDAVSAVLIIESYFE 136 >gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor kronotskyensis 2002] gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor kronotskyensis 2002] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G R+G+AISDP + A P + + EL NI +IG PL+ Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQGYNIEKVVIGYPLS 61 Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136 ++ + + I+ + V V WDER +T + ++++ ++N RKK+I + Sbjct: 62 KLHPDQKDEKLKKIDEISEKIESRYNVEIVKWDERFSTKAVERVIDEELNWKRKKKI--I 119 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 120 DKVAAVYILQGYLD 133 >gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SD A P + RKKV ++ + N + ++G+P +++ Sbjct: 6 ALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGIPKSLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137 G E + R ++ + + + DER +TV A IL D+N + K+++ VD Sbjct: 65 GEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRKV--VD 122 Query: 138 SIAAALILQEVLD 150 +AA++ILQ LD Sbjct: 123 KVAASIILQTYLD 135 >gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae T7901] gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 146 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + + I + D GT+ IG+A+ + A P L K +L + ++ Sbjct: 5 RSEETILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+NM+GSE R F N ++ + F+DERLTT +A++ R Sbjct: 65 GLPVNMDGSEMEMTRRARKF-GNRLNGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRA 123 Query: 134 QKVDSIAAALILQ 146 + VDSIAA LIL+ Sbjct: 124 KPVDSIAARLILE 136 >gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 2_1_31] gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum ATCC 33693] gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 2_1_31] gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum ATCC 33693] Length = 138 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A SD A P + RKKV ++ + N + ++G+P +++ Sbjct: 6 ALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGIPKSLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137 G E + R ++ + + + DER +TV A IL D+N + K+++ VD Sbjct: 65 GEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRKV--VD 122 Query: 138 SIAAALILQEVLD 150 +AA++ILQ LD Sbjct: 123 KVAASIILQTYLD 135 >gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155] gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185] gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195] gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223] gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183] gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175] gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155] gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185] gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195] gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223] gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183] gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175] gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678] Length = 141 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ + D GTK IG+AI +++T +A LLS + I + Sbjct: 3 SKTVLGFDFGTKSIGVAIG---------------QEITASATPLLSIKAVDGIPNWDQIG 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E H R F N I+ K V DERLTT A+ Sbjct: 48 DLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFKVKIATQDERLTTTDAKA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L ++ + +VD+++A LI++ + Sbjct: 107 RLFELGGFKALTKGQVDAVSAVLIIESYFE 136 >gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM 3776] gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM 3776] Length = 199 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D G KR+GLAIS + A P RK + + +A ++GLPL+ +G Sbjct: 32 VDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAGLVVGLPLHTSG 91 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 E R F + R +P FWDER T+VSA+ ++ V Sbjct: 92 EESELSREVRQF-GEWLARCTNLPLRFWDERYTSVSAELLMWQDGV 136 >gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes DSM 20306] gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes DSM 20306] Length = 175 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 19/148 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+GT RIG+A+SD R A P + R+ + + + LL+ I+ I ++GL Sbjct: 21 GLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAIVEIVVGL 80 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV-------------FWDERLTTVSAQQIL 122 P ++ G+ V + + R++ PF DERLTTV+A L Sbjct: 81 PRDLQGNGSASVKHAKEIAFRL-KRRLNKPFAPDPTPPHPVPVVRMGDERLTTVAATTAL 139 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150 VS KK +D AA ILQ LD Sbjct: 140 RASGVSEKKGRAVIDQAAAVEILQSWLD 167 >gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella insecticola LSR1] gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella insecticola LSR1] Length = 140 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG+AI A L + L++ + ++GL Sbjct: 3 NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N + + V DERL+TV+A+ L + R Sbjct: 63 PLNMDGTEQPLTSRARKFA-NRLHSRFNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121 Query: 136 VDSIAAALIL 145 VD+ +AA+IL Sbjct: 122 VDAASAAVIL 131 >gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby] gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella pneumophila str. Corby] Length = 142 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G KRIG+A+ A P + K + IT N A I+GLP ++ Sbjct: 11 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA Sbjct: 71 DRELYTTSAARCFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 129 Query: 141 AALILQEVLDR 151 A +IL++ L + Sbjct: 130 ACVILEQWLQQ 140 >gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae D-4968] gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150] gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae D-4968] gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150] Length = 139 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ D G KRIG+A+ A P L + + I + A ++G Sbjct: 2 PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P ++GSE R F + R V +P DERL+TV+A++ L RK + Sbjct: 62 IPTCIDGSELYTTVPARRFAQELHKRFV-LPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120 Query: 135 KVDSIAAALILQEVLDR 151 +VDS+AA +IL++ L Sbjct: 121 EVDSVAACVILEQWLQH 137 >gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 139 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GT+ IG AI +++T TA L SF T+ I + Sbjct: 3 NRTIMAFDFGTRSIGAAIG---------------QEITGTARALTSFKATDGIPNWGQIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I+GLPLNM+G+E R F N + + V DERLTTV A+ Sbjct: 48 KLLKEWQPDLVIVGLPLNMDGTEQFVTVQARKFA-NRLHGRFGVQVQLQDERLTTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D + KVD+ +A +IL+ ++ Sbjct: 107 HLFDRGGYKALNKGKVDATSAVIILESWFEQ 137 >gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii ATCC 33806] gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii ATCC 33806] Length = 174 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 10/148 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75 +D+GT RIG+A+S A P + R K ++ ++ L++ IT ++ I+GL Sbjct: 21 GVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNDVVEVIVGL 80 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++ G+ V + + R ++ +P DERL+TV A Q L VS K Sbjct: 81 PRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRASGVSEKS 140 Query: 132 RIQKVDSIAAALILQEVLD-RISFLESS 158 + +D AA ILQ LD R ++L + Sbjct: 141 GRKIIDQAAAVEILQSWLDGRTNYLHRT 168 >gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM 16511] gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM 16511] Length = 130 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IA++D+G KRIG+AIS P R P+ + R+ Q A EL F+ + ++GLP Sbjct: 2 IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 SE R FV ++++ + + DE ++ A++ + R+KR ++DS Sbjct: 61 -GSSEEEMERRIRHFV-SLLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116 Query: 139 IAAALILQEVLDR 151 +AA +IL+ L+R Sbjct: 117 LAAQIILERWLER 129 >gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM 15434] gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM 15434] Length = 160 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 55/130 (42%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D+G R+G+A D A P L R + E + ++GLP+ ++ Sbjct: 10 AFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQLS 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G R + + R VP DERL+TVSA Q L K VD A Sbjct: 70 GGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQAA 129 Query: 141 AALILQEVLD 150 A +IL++ L+ Sbjct: 130 AVVILEQALE 139 >gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM 12112] gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM 12112] Length = 142 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 13/138 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G RIG+A SD FA ++ + +T + I +E + A ++GLP + Sbjct: 6 GLDIGDVRIGVAKSDGLAMFASSYE-VIDRNITDPFERIKEIINSEKVIALVLGLPKTKD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRK---KRI 133 G +V FV + K+++P + DER TT A+ L N S+K +R Sbjct: 65 GQNSIQVEKIERFVSEL---KLFIPENLPIHYIDERYTTKEAEYYL--KNFSKKNGKERR 119 Query: 134 QKVDSIAAALILQEVLDR 151 + VD +AA +ILQ LD+ Sbjct: 120 KVVDMVAAQIILQNFLDK 137 >gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4] gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4] Length = 139 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+AI A P L E+ + I ++GLPLN Sbjct: 6 VLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F N I + V DERLTT A+ L +M + +VDS Sbjct: 66 MDGTEQEMTQRARKFA-NRISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKGQVDS 124 Query: 139 IAAALILQEVLDRI 152 ++A LI++ + + Sbjct: 125 MSAVLIIESYFENL 138 >gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia vietnamiensis G4] gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4] Length = 149 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+A+ + R A P L R+ + ELL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ L + NV + R +D Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTDMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ D +S E Sbjct: 129 AEAARVILQQYFDELSDHE 147 >gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1] gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1] Length = 148 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GT IG+A+ A L + L++ I AFI+G+PLNM+ Sbjct: 8 GFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPLNMD 67 Query: 81 GSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---QK 135 G+E R F + + RK + P DERL+T A Q L + K+ + Q+ Sbjct: 68 GTETILAPRARKFGNRLTGRFRKPWFPV---DERLSTREAWQALESQHQLHKRALRGNQR 124 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 VD++AAALIL S+LES K Sbjct: 125 VDAVAAALILG------SWLESHK 142 >gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1] gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1] Length = 135 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID G KR G+A++D + A VR T ++ L ++ EN+ F+IG P Sbjct: 4 ILAIDYGKKRTGIAVTDEMQLIASGLT-TVR---THDLIKFLKEYVAKENVELFLIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MN + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 60 QMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNKSL 119 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQ L Sbjct: 120 IDEISATIILQSYL 133 >gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 139 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG A+ A P + + I A ++GLPLN Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F + R +P DERLTT A+ + R KVD Sbjct: 65 MDGTEQPLTLRAKKFAKRLHGR-FNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVDG 123 Query: 139 IAAALILQEVLDRIS 153 I+A LIL+ + + Sbjct: 124 ISACLILESWFENYA 138 >gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG 18818] gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 140 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 8/138 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D+G KRIGLA++ G P ++RK Q + EL + T I ++GL Sbjct: 3 NKKILACDVGLKRIGLAVTQLG--IILPIEPIIRKNRNQASKELSEILKTREIEILVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G E + + +H + + DE T++ A Q M V + +IQK Sbjct: 61 P---SGGEAGHSDTRKRILHFVGLVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117 Query: 136 ---VDSIAAALILQEVLD 150 +DS++A LIL+ L+ Sbjct: 118 DGRLDSLSATLILERFLE 135 >gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of Yqgf From Escherichia Coli, A Hypothetical Protein gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of Yqgf From Escherichia Coli, A Hypothetical Protein Length = 138 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG+A+ A P P + + T + + I+GLPLN Sbjct: 5 LXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+E P R F N I + V DERL+TV A+ L + R KVDS Sbjct: 65 XDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123 Query: 139 IAAALILQEVLDR 151 +A +IL+ ++ Sbjct: 124 ASAVIILESYXEQ 136 >gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24] gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24] Length = 199 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+GT R+G+A+ D A P L R T + +L+ + +E +GLP + Sbjct: 17 GVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFVGLPRTL 76 Query: 80 NGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 G E + + + R +P DERL+TV+A + L + +S + + Sbjct: 77 KGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSSRNHRKV 136 Query: 136 VDSIAAALILQEVLD 150 VD +AAA ILQ +D Sbjct: 137 VDQVAAAGILQHAID 151 >gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4] gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 177 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 ++KP+ I ++D G K++G+A+ + A L LL I +A Sbjct: 23 AIKPHL-ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKV 81 Query: 72 IIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++GLPLNM+GS R H R H ++++ + V DERLT+V+A++I + Sbjct: 82 VVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGW 141 Query: 128 SRKKRIQKVDSIAAALILQ 146 + +R +D I+A +++ Sbjct: 142 IQNER-DPIDDISACILMS 159 >gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM 20162] gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM 20162] Length = 161 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G RIG+A+SDP A P + + + +T +IGLP + Sbjct: 14 ALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGLPRTLR 73 Query: 81 GSEGPRVHSTRAF------VHNMIDRKVYVPFV-FWDERLTTVSAQQILIDMNVSRKKRI 133 G G F V + D+ P V F DER TTV+AQ+ L D V K++ Sbjct: 74 GDRGESARMAEGFAARLATVLDATDQPS--PRVCFSDERFTTVTAQRALRDNGVRAKEQR 131 Query: 134 QKVDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 132 AVIDQAAAVAILQGWLD 148 >gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp. SB155-2] gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 130 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 8/131 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IA+ID+G KRIG AI G+ P+ ++RK Q A ++ SF+ NI ++G+P Sbjct: 5 IAAIDVGLKRIGTAICLDGK-IVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP-- 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ + A +++D V FV DE T+ A++ V + K+ K+DS Sbjct: 62 -DGTSKEEMQRRIAHFVSLLDFDGVVEFV--DEGFTSHEAKEAT--KGVIKHKKDGKIDS 116 Query: 139 IAAALILQEVL 149 IAA IL+ L Sbjct: 117 IAAQKILERWL 127 >gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB] gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB] Length = 139 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+A+ A P L + L + + ++GLP Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P R F N + + + DERL+TV A+ L + R V Sbjct: 64 LNMDGTEQPLTDRARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122 Query: 137 DSIAAALILQEVLD 150 DS +AA+ILQ+ + Sbjct: 123 DSQSAAIILQDWFE 136 >gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 143 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 16/150 (10%) Query: 15 PNQPIASIDLGTKRIGLAISD-----PGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 P I +ID GTKR GLA++D PG P L+ L ++ E + Sbjct: 2 PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTHQLLNY--------LADYLGREEVE 53 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++G P M+ + + +A + + + DER T+V AQQ + + + + Sbjct: 54 TIVLGKPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGK 113 Query: 130 KKRIQK---VDSIAAALILQEVLDRISFLE 156 ++R Q VD ++A +ILQ L+ + L Sbjct: 114 QRRRQDKGLVDRVSATIILQSYLESLRMLH 143 >gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus flagellatus KT] gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT] Length = 146 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G KRIG+AI + AHP + + + + I ++GLP Sbjct: 12 VLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEMLVVGLPSY 71 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG E R F + R +P DERL++ A Q L +S +K+ +D Sbjct: 72 LNGDEHALTQLCRKFARRLEGR-FNLPVQLVDERLSSAEASQTLKQSGISGRKQKSVLDQ 130 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ D ++ Sbjct: 131 VAAQHILQSYFDGLA 145 >gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis ATCC 33393] gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis ATCC 33393] Length = 139 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG A+ A P + + I ++GLPLN Sbjct: 5 VIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F N + + +P DERLTT A+ + R KVD Sbjct: 65 MDGTEQPLTLRAKKFA-NRLHGRFNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVDG 123 Query: 139 IAAALILQEVLDRIS 153 I+A LIL+ ++ Sbjct: 124 ISACLILESWFEQYC 138 >gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER] gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64] gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER] gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64] Length = 144 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 ++DLGTK G AISD G A L ++ A+ ++ + T I ++G PL Sbjct: 5 ALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPLR 64 Query: 79 MNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 N + R +F H + D K+Y +E TT++A IL + +S KKR Sbjct: 65 SNNTSSERTVLFESFAHKLKGIFKDYKIYQV----NEYGTTIAATNILKEAKLSIKKRKA 120 Query: 135 KVDSIAAALILQEVLD 150 D+++A LILQE L+ Sbjct: 121 HKDTLSAVLILQEFLN 136 >gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis ATCC 25486] gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis ATCC 25486] Length = 135 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 42/80 (52%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLP +++G EGP R+F + VP DER+TTV+A Q L V K Sbjct: 39 VVVGLPRSLSGREGPAAKKIRSFAQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSK 98 Query: 131 KRIQKVDSIAAALILQEVLD 150 K +D AA +ILQ L+ Sbjct: 99 KGRSVIDQAAAVVILQNALE 118 >gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 139 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GT+ IG AI +++T TA L SF T+ I + Sbjct: 3 NRTIMAFDFGTRSIGAAIG---------------QEITGTARALTSFKATDGIPNWQQIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I+GLPLNM+G+E R F N + + V DERLTTV A+ Sbjct: 48 KLLKEWQPDLVIVGLPLNMDGTEQFVTIQARKFA-NRLHGRFGVQVELQDERLTTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D + KVD+ +A +IL+ ++ Sbjct: 107 HLFDRGGYKALDKGKVDATSAVIILESWFEQ 137 >gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont] Length = 138 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTE-NIAAFII 73 ++ + D GTK IG+AI + RP K T EL+ + E ++ Sbjct: 3 SETLLGFDFGTKSIGVAIGQ--QLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVV 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+GSE P R F N + + V DERL+TV A+ L + R + Sbjct: 61 GLPLNMDGSEQPLTARARKFA-NRLHGRFGVRVELQDERLSTVEARADLFERGGYRALQK 119 Query: 134 QKVDSIAAALILQEVLD 150 +DS +A +ILQ+ + Sbjct: 120 GHIDSQSAVIILQDWFE 136 >gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri JV22] gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri JV22] Length = 126 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 16/134 (11%) Query: 19 IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +ASID+G KRIG+AI SD P+ ++RK Q A ++ +F+ I I+G Sbjct: 3 LASIDVGLKRIGVAICLTSD----IVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGF 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + + H FV+ + K+ +P+ F +E ++++ A++ LI + + KR + Sbjct: 59 PTSSEDMQNRIKH----FVNLL---KLQIPYEFCEENMSSIEAEE-LIKGEI-KYKRDGR 109 Query: 136 VDSIAAALILQEVL 149 VDS+AA +IL+ L Sbjct: 110 VDSLAAKIILERYL 123 >gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 145 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78 ++DLGTK G AISD G A L ++ A+ ++ + T I ++G PL Sbjct: 6 ALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPLR 65 Query: 79 MNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 N + R +F H + D K+Y +E TT++A IL + +S KKR Sbjct: 66 SNNTSSERTVLFESFAHKLKGIFKDYKIYQV----NEYGTTIAATNILKEAKLSIKKRKA 121 Query: 135 KVDSIAAALILQEVLD 150 D+++A LILQE L+ Sbjct: 122 HKDTLSAVLILQEFLN 137 >gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5] gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5] Length = 149 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 11/141 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75 + D G KRIG+AI + R A R +V R+ + +LL+ + A ++GL Sbjct: 13 AFDYGEKRIGVAIGNALTRSA--RALVVISNLNREHRFKAVGDLLAEWRPD---ALVVGL 67 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P++ +G+ + F N ++ + +P + DER ++V A+ L + NV + R + Sbjct: 68 PMHPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEM 126 Query: 136 VDSIAAALILQEVLDRISFLE 156 +D+ AA +ILQ+ LD++S E Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147 >gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 143 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I + D+G+K IGLA S + Q +L ++ N + ++G P Sbjct: 3 QSIIAFDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVGYP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131 NMN + G R + +D +Y F + DER TT A+ ILI N++R+K Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKSFNKDQIIKVDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLD 150 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLE 139 >gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121] gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121] Length = 152 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78 D GT RIG+A+ A P P R + + ++ + E F++GLPLN Sbjct: 19 GFDFGTTRIGIAVGQEITATATPINPIKARDGIPN--WDTIAEVVKEWQPDGFVVGLPLN 76 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F N + + P DERL++ A+ +I +R + VD Sbjct: 77 MDGTENEMCQRARKFA-NRLHGRYNKPSYMMDERLSSYEAKGQVIKEGGNRNFKANSVDG 135 Query: 139 IAAALILQ 146 +AA +IL+ Sbjct: 136 LAAQMILE 143 >gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus denitrificans ATCC 25259] gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC 25259] Length = 145 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFI 72 + + + + DLG KR G+A + AHP +++ + T + + + E A F+ Sbjct: 5 QTHGTVLAFDLGLKRTGVASGELAIGIAHPLT-VIQAESTDARMAAIEKLAAEWQPALFV 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP +GSE R F + + + P DERLT+ +A+ L + KK Sbjct: 64 LGLPTRADGSENEMTRVARNFARRL-ESRFERPVFLIDERLTSATAESELHARGIHGKKN 122 Query: 133 IQKVDSIAAALILQEVLD 150 D++AA LILQ D Sbjct: 123 KALTDAVAAQLILQGFFD 140 >gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium pseudotuberculosis FRC41] gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium pseudotuberculosis FRC41] gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis C231] gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis 1002] gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis I19] Length = 197 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ID+GT RIG+A SD R A P R +R + LL I + ++GL Sbjct: 20 GIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAVVEVVVGL 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++ G+ V + + R + +P DERLTTV A Q L +S K Sbjct: 80 PRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRASGISEKT 139 Query: 132 RIQKVDSIAAALILQEVLD 150 + +D AA ILQ LD Sbjct: 140 GRKVIDQAAAVEILQSWLD 158 >gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823] gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823] Length = 142 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID G KR GLA+SD + FA + K + EL ++ E I +IG P Sbjct: 3 KILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTLMD---ELKKLVSKEKITEIVIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 ++ S+ + R + +KV+ V DER T+ A ++ + +K R QK Sbjct: 60 RLDTSDSHITQNVRLLKEAV--QKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117 Query: 136 --VDSIAAALILQEVL 149 +D+++A +ILQ+ L Sbjct: 118 GLIDTVSATIILQDYL 133 >gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164] gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164] Length = 147 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 1/128 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT+++G+AI + A+P K LL + F++GLPLN Sbjct: 10 IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+ SE R F + + + + DERLTT A+ L R DS Sbjct: 70 MDESESELSARARKFARR-LRHQTNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128 Query: 139 IAAALILQ 146 IAAAL+++ Sbjct: 129 IAAALLIE 136 >gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4] gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4] gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 177 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLP 76 +ID+G+ RIG+A SDP A P + R K +++ ++ I+GLP Sbjct: 23 AIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAVEVIVGLP 82 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G +G AF + +P DERLTTV+A + L + V + + + Sbjct: 83 QTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKARGQRPMI 142 Query: 137 DSIAAALILQEVLDRISFL----ESSK 159 D AA ILQ LD S ESSK Sbjct: 143 DQAAAVEILQGWLDERSRAVKPGESSK 169 >gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis Bu] Length = 149 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+ Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F N ++ + +P + DER ++V A+ L + +V + R +D Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAGMLD 128 Query: 138 SIAAALILQEVLDRISFLE 156 + AA +ILQ+ LD++S E Sbjct: 129 AEAARVILQQYLDQLSDHE 147 >gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist] gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27] gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist] Length = 145 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 9/142 (6%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +VKS+ ++ +D G+ RIG+A + G A P L R + E+L +I+ +I Sbjct: 1 MVKSV-ADRFFLGLDFGSTRIGVA-RNCGS-LAVPVGVLPR----ASCAEILGYISRYSI 53 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +IGLPL + G E + F ++ V V F +DER TTV A Q + Sbjct: 54 DEVVIGLPLTLAGKEKQSARLAKEFSRFLVSSGVQVRF--FDERFTTVIATQKFYSLGKG 111 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 K+ + VD+ AA ++LQ LD Sbjct: 112 VKQIRKCVDAAAATVMLQLFLD 133 >gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430] gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430] gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC BAA-2158] Length = 141 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 NQ + D GTK IG+AI A P L + L + + ++GL Sbjct: 4 NQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L + R Sbjct: 64 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122 Query: 136 VDSIAAALILQEVLD 150 VDS++A +IL+ + Sbjct: 123 VDSLSAVIILESWFE 137 >gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5] gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5] Length = 173 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +KP+ I ++D G K++G+A+ + A L LL I +A + Sbjct: 20 IKPHL-ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVV 78 Query: 73 IGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +GLPLNM+GS R H R H ++++ + V DERLT+V+A++I + Sbjct: 79 VGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWI 138 Query: 129 RKKRIQKVDSIAAALILQ 146 + +R +D I+A +++ Sbjct: 139 KHER-APIDDISACILMS 155 >gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946] gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946] Length = 140 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 NQ + D GTK IG+AI A P L + L + + ++GL Sbjct: 3 NQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L + R Sbjct: 63 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121 Query: 136 VDSIAAALILQEVLD 150 VDS++A +IL+ + Sbjct: 122 VDSLSAVIILESWFE 136 >gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6] gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6] Length = 207 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+GT R+G+AI D A P L R + + L++ + E I+G+P M Sbjct: 26 GVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIVGMPRTM 85 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY--------VPFVFWDERLTTVSAQQILIDMNVSRKK 131 G E H++ + VP DERL++VSA + L + +S + Sbjct: 86 KGEE----HASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSSRN 141 Query: 132 RIQKVDSIAAALILQEVLD 150 + VD +AAA ILQ +D Sbjct: 142 HRKVVDQVAAAGILQHAID 160 >gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium psychrophilum JIP02/86] gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum JIP02/86] Length = 137 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +ID G KR G+AI+D + A + ++T++ L + T E + +IG P Sbjct: 4 ILAIDYGQKRTGIAITDEMQIIASGLTTIA----SETSIAFLRDYFTKEKVEKVLIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MNG FV + + DER T+ A Q +ID + +K+R K Sbjct: 60 QMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119 Query: 136 VDSIAAALILQEVLDR 151 VD I+A ++LQ+ L R Sbjct: 120 VDEISATIMLQDYLTR 135 >gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis M01-240013] gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 151 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP++ +G++ H + F + R +P V+W DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSHKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 123 SVLDQVAAQAILHGFFE 139 >gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45] gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45] Length = 146 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query: 21 SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 S DLGTK G AISD RF +V KV E++ + +I AF Sbjct: 5 SFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVK----EIIK-MYQNSIDAF 59 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G PL NGS+ R F + + + DE +T+ AQ+IL D +S KK Sbjct: 60 VLGYPLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKK 119 Query: 132 RIQKVDSIAAALILQEVL 149 K D+++A +IL + L Sbjct: 120 TKSKKDTVSAVIILNDFL 137 >gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247] gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247] Length = 143 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+G+ RIG+A+ DP A P + R +E ++ + E + A I+GLP + Sbjct: 10 GVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAEVIVGLPKTL 69 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + R F + R V + DERLTTV+A Q + + K +D Sbjct: 70 RNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAKSSRAVIDQA 129 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 130 AAVAILQGWLD 140 >gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661] gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661] Length = 140 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P L + T ++ + + ++GLPLNM+ Sbjct: 8 AFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPLNMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+TV A+ L + R VDS++ Sbjct: 68 GTEQPLTARARKFA-NRIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGSVDSLS 126 Query: 141 AALILQEVLD 150 A +IL+ + Sbjct: 127 AVIILESWFE 136 >gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 140 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GTK IG AI ++VT TA L SF E + Sbjct: 3 NRTIIAFDFGTKSIGAAIG---------------QEVTGTARPLASFKANEGSPDWSKIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N I + V DERL+TV A+ Sbjct: 48 KMLKEWQPDLVVVGLPLNMDGTEQPVTAQARKFA-NRIHGRFGVQVALHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L R VD+ +A +IL+ ++ Sbjct: 107 HLFAGGGYRALDKGSVDAASAVIILESWFEQ 137 >gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202] gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60] Length = 140 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 31/151 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GT+ IG AI +++T +A L SF + + Sbjct: 6 ILAFDFGTRSIGCAIG---------------QELTGSARPLQSFKANDGAPDWQQIEKVL 50 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+GSE P R F N + + V DERL+TV A+ L Sbjct: 51 REWQPDLVVVGLPLNMDGSEQPLTQMARKFA-NRLHGRFGVQIALQDERLSTVEARAHLF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 R +VD+ +AALIL+ + ++ Sbjct: 110 AGGGYRALEKGRVDAASAALILESWFEHQTY 140 >gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae UW101] gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101] Length = 138 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I SID G KR G+A++D + A + T T ++ L + E + A +IG P Sbjct: 4 ILSIDYGQKRTGIAVTDEMQIIASGLTTIP----THTLIDFLKDYFAKEKVEAVLIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MNG FV + + + + DER T+ A Q ++D +S+K+R K Sbjct: 60 QMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGL 119 Query: 136 VDSIAAALILQEVLDRISF 154 +D I+A ++LQ+ L F Sbjct: 120 IDEISATIMLQDYLSSKRF 138 >gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425] gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG KRIG+A D A L R+ + +L + + ++GLP M+ Sbjct: 6 GLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + I + + +P + DERLT+ A+ +L + +D A Sbjct: 66 GSIGFQARRVQRLAQR-IAQALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRKA 124 Query: 141 AALILQEVLDR 151 AALILQ+ L++ Sbjct: 125 AALILQQWLEQ 135 >gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1] gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1] Length = 145 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GT+RIGLA D A P P LV + LL+ + ++G PLNM+ Sbjct: 5 GIDYGTRRIGLAYGDE-LGVATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHPLNMD 63 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 + GP+ A + V DERLT+ A+ + + +DS A Sbjct: 64 DTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVIDSRA 123 Query: 141 AALILQEVLDR 151 A LILQ+ LD+ Sbjct: 124 ATLILQDFLDQ 134 >gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis UMN179] gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis UMN179] Length = 139 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N + + D GT+ IG A+ + +TQTA L +F + I + Sbjct: 3 NLTVIAFDFGTQSIGCAVG---------------QSITQTAQALPAFKAQDGIPNWDAIK 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E R F N ++ + V DERLTT A+ Sbjct: 48 KCLDEWKPDLVVVGLPLNMDGTEQEITQRARKFA-NRLNGRFGVKIALQDERLTTTEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + R K+DSI+A LIL+ + Sbjct: 107 EIFSRGGYRALNKGKIDSISACLILESWFE 136 >gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM 43183] gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM 43183] Length = 152 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 ID+G+ RIG+A SDP A P + R K L+ ++ + E+ A I+GLP ++ Sbjct: 4 GIDVGSVRIGVARSDPAGILATPLETVRRGK---GDLDRIAELVAEHEAVEVIVGLPTSL 60 Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +G GP R F + R +P +DERLTTV+A+ L V K R Q Sbjct: 61 SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120 Query: 136 VD 137 VD Sbjct: 121 VD 122 >gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC BAA-895] gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895] Length = 138 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + V DERL+T+ A+ L + R KVDS + Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGKVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESYFEQ 136 >gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b] Length = 142 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G KRIG+A+ A P + K + IT N A I+GLP ++ Sbjct: 11 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVGLPTCID 70 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA Sbjct: 71 DRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 129 Query: 141 AALILQEVLDR 151 A +IL++ L + Sbjct: 130 ACVILEQWLQQ 140 >gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM 6725] gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM 6725] Length = 138 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G R+G+AISDP + A P + + EL NI +IG PL+ Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQGYNIEKVVIGYPLS 61 Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136 ++ + + I + V V WDER +T + ++++ ++N RKK+I + Sbjct: 62 KLHPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDEELNWKRKKKI--I 119 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 120 DKVAAVYILQGYLD 133 >gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM 7454] gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM 7454] Length = 76 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV +++ ++ + + DER+TT+ + ++L+DM+V R+ R + +D Sbjct: 1 MNNTLGPQAMKVISFV-DLLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59 Query: 139 IAAALILQEVLD 150 IAA+ ILQ LD Sbjct: 60 IAASFILQTYLD 71 >gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 135 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K+IG+A+ + + P L + + + I ++GLPLN Sbjct: 3 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S Sbjct: 63 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121 Query: 139 IAAALILQEVLDR 151 AA +IL+ ++ Sbjct: 122 CAAVIILESWFNQ 134 >gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5] gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5] Length = 136 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR G+A++D + A + K + L +++ E + A +IG P Sbjct: 4 IIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTF---LKKYLSEEKVEAMVIGEPKR 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN F ++ + + + DER T+ A Q ++D + +KKR K V Sbjct: 61 MNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNKALV 120 Query: 137 DSIAAALILQEVL 149 D I+A +ILQ+ L Sbjct: 121 DQISATIILQDYL 133 >gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 146 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K+IG+A+ + + P L + + + I ++GLPLN Sbjct: 14 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S Sbjct: 74 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 132 Query: 139 IAAALILQEVLDR 151 AA +IL+ ++ Sbjct: 133 CAAVIILESWFNQ 145 >gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str. F0058] gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str. F0058] Length = 138 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID GTKR+G+A++DP A + ++ L ++T + +IG PL Sbjct: 4 ILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDF---LNEYLTVNDCNRLVIGYPLT 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 + F+ Y+ + +DER T+ A ++ + R+KR K + Sbjct: 61 LRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDKAVI 120 Query: 137 DSIAAALILQEVLDRIS 153 D I+A +ILQ L+ IS Sbjct: 121 DRISATIILQNYLESIS 137 >gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis 158L3-1] gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis 158L3-1] Length = 147 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTALELLSFITTEN-----IAAFIIG 74 +DLG K G AISD + A F + + + + E+ + I+G Sbjct: 5 CLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDEIILG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL M+ SE + F ++ + + +P DER +T +A+ IL + K++ Sbjct: 65 LPLRMDLSESKTTKMVKKFA-TVLAKNITLPIRLQDERQSTKNAEAILSQGGYNAKQKKL 123 Query: 135 KVDSIAAALILQEVLDR 151 K DS+AA LIL++ L+R Sbjct: 124 KKDSLAAQLILEDYLER 140 >gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila str. Paris] gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris] Length = 139 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G KRIG+A+ A P + K + IT N A I+GLP ++ Sbjct: 8 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA Sbjct: 68 DRELYTTSAARHFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126 Query: 141 AALILQEVLDR 151 A +IL++ L + Sbjct: 127 ACVILEQWLQQ 137 >gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM 9187] gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187] Length = 146 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + D GTK IG+A A P L + ++ + I+GL Sbjct: 6 NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + R + F DERLTT A+ L + R + Sbjct: 66 PLNMDGTEQEMTQRARKFGQRLHGRFGF-QVEFKDERLTTTDAKARLFEHGGYRALGKSR 124 Query: 136 VDSIAAALILQEVLDRISFLESSKG 160 VD+++A LIL+ S++ES G Sbjct: 125 VDAVSAQLILE------SWMESHYG 143 >gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617] Length = 141 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTK IG+AI A P L + + + + ++GL Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L + R Sbjct: 64 PLNMDGSEQPLTARARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122 Query: 136 VDSIAAALILQEVLD 150 VDS++A +IL+ + Sbjct: 123 VDSLSAVIILESWFE 137 >gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829] gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829] gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829] Length = 141 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G R+G+A+SD A P L ++V A + + GLP Sbjct: 3 VLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLPRT 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G G + I R + F DERL++ A++IL + S K+ +D Sbjct: 63 LAGDVGAQAQKLMEQAQT-IARACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHIDM 121 Query: 139 IAAALILQEVLD 150 IAA+L LQ LD Sbjct: 122 IAASLFLQAWLD 133 >gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 137 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D GTK IG+A+ A P + K +L I A ++G PLN Sbjct: 3 IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G++ + F + + ++ +P + DERL+TV A+ IL + + + +++D Sbjct: 63 IDGTKQKITQCSENFSKKL--KNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERID 120 Query: 138 SIAAALILQ 146 S++A +IL+ Sbjct: 121 SMSAVIILE 129 >gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002] gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002] Length = 146 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 + D G KRIG+A+ + R A P +V+ + + E L + E A ++GLP++ Sbjct: 13 AFDYGVKRIGVAVGNSLTRRARPL-VVVQNRSKEYRFEALGKLIAEWKPDALVVGLPMHP 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ R + F N ++ + +P + DER ++V A+ + N R +D+ Sbjct: 72 DGTPHERTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAEIRAGNA----RADMLDAE 126 Query: 140 AAALILQEVLDRIS 153 AA++ILQ+ LD +S Sbjct: 127 AASIILQQYLDELS 140 >gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL 2338] gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL 2338] Length = 124 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 42/77 (54%) Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G+P + G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+ Sbjct: 37 GMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQR 96 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 97 AVVDQAAAVEILQAWLD 113 >gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383] gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383] Length = 149 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 11/141 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75 + D G KRIG+A+ + R A R +V R+ + +LL+ + A ++GL Sbjct: 13 AFDYGEKRIGVAVGNALTRSA--RALVVIQNLNREHRFKAVGDLLAEWRPD---ALVVGL 67 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P++ +G+ + F N ++ + +P + DER ++V A+ L + NV + R + Sbjct: 68 PMHPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEM 126 Query: 136 VDSIAAALILQEVLDRISFLE 156 +D+ AA +ILQ+ LD++S E Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147 >gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy] gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy] Length = 142 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + ++ +P DERL+TV A+ L + R+ + Sbjct: 65 LPTCIDDRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 124 EVDSIAACVILEQWLQQ 140 >gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa] gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa] Length = 254 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+A+S + F RP V + + + L LL E + FIIGLP + Sbjct: 93 GVDLGLSRSGVALS---KGFTV-RPLTVLELRGQKLELRLLEIAENEEVDEFIIGLPKSW 148 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-----DERLTTVSAQQILIDMNVSRKKRIQ 134 +G E P+ + R+ V W DE T+ A +IDM +++ R + Sbjct: 149 DGKETPQSNKVRSVAGRFA---VLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQK 205 Query: 135 KVDSIAAALILQ 146 KVD+ AA ++L+ Sbjct: 206 KVDAYAAVMVLE 217 >gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone HF10-88D1] Length = 153 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127 FI+G+PL+ G + + + ++ R++ +PF + +E +T S+ + I Sbjct: 61 TGFIVGIPLDEEGQMTTQAIDCKKY-GQLLSRELMLPFSYVNEHSSTWESSYRFGI---- 115 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ + LE G Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIAEGPELEEIAG 147 >gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037] gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037] Length = 157 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75 ID+G R+G+A SDP A P + RK ++ A E +F ++GL Sbjct: 11 GIDVGRARVGVARSDPDGVLAVPVETVPRKGEPVRRIVALAAEYEAF-------EVLVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLN+ G + RAF + + P DERL+TVSA +L S++ Sbjct: 64 PLNLRGEDTASTADARAFAQELAA-ALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRSI 122 Query: 136 VDSIAAALILQEVLD 150 VD +AA ++LQ+ LD Sbjct: 123 VDQVAAVVLLQQALD 137 >gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386] gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386] Length = 137 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G RIG+A SD A P + R T + + EN ++G+P +++ Sbjct: 6 GLDVGDVRIGVAKSDILGILATPLEVINRND-TDPVKRIKELLQQENTNGLVVGIPKSLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVD 137 G+ +V F+ + + + DER TTV A+ L N S+K +R + VD Sbjct: 65 GTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYL--RNYSKKNPRERRKVVD 122 Query: 138 SIAAALILQEVLD 150 +AA++ILQ+ LD Sbjct: 123 MVAASIILQKFLD 135 >gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC 49989] gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC 49989] Length = 148 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 8/143 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G IG+A SD A + R+ + + +++ + ++ + +IG+PLN Sbjct: 3 VLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMPLN 62 Query: 79 MNGSEGPRVHS--TRAFVHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 G E S T F + ++ + F+DER TT A+ +LI + KK Sbjct: 63 TYG-EAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGKK 121 Query: 132 RIQKVDSIAAALILQEVLDRISF 154 + +D AA ++LQ LD+ S+ Sbjct: 122 QKDVIDKQAAVILLQSYLDKKSY 144 >gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha C91] gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91] Length = 157 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPL 77 + + D G +RIG+AI + R AHP + + +T+ E + I T ++GL + Sbjct: 21 VLAFDFGVRRIGVAIGEYELRLAHPL-MTIDQAMTKPRFEKIAELIETWQPVLLVVGLSV 79 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+E + F + + + +P V DER TT A+ L ++ ++ +K+ +D Sbjct: 80 HADGAEHEITRLCQRFARRL-EGRFGIPVVMEDERYTTAIARLTLEEVGITGRKQRPMLD 138 Query: 138 SIAAALILQEVLD 150 IAA ILQ D Sbjct: 139 QIAAQHILQTFFD 151 >gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G KRIG+A+ A P + K + IT N A I+GLP ++ Sbjct: 8 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA Sbjct: 68 DRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126 Query: 141 AALILQEVLDR 151 A +IL++ L + Sbjct: 127 ACVILEQWLQQ 137 >gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia AU 1054] gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia HI2424] gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia MC0-3] gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia J2315] gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054] gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424] gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3] gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 149 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 11/141 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75 + D G KRIG+AI + R A R +V R+ + +LL+ + A ++GL Sbjct: 13 AFDYGEKRIGVAIGNALTRSA--RALVVIQNLNREHRFKAVGDLLAEWRPD---ALVVGL 67 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P++ +G+ + F N ++ + +P + DER ++V A+ L + NV + R Sbjct: 68 PMHPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTDM 126 Query: 136 VDSIAAALILQEVLDRISFLE 156 +D+ AA +ILQ+ LD++S E Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147 >gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC 25986] gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC 25986] Length = 119 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 + G PL M G GP+ A + D ++ +P F DERL++ A++IL + ++ K Sbjct: 32 LVSGRPLTMAGEPGPQAERVAAVAQKIAD-ELDLPLEFEDERLSSQEAKRILREQGLNEK 90 Query: 131 KRIQKVDSIAAALILQEVLDR 151 + K+D IAA+L LQ LDR Sbjct: 91 QMRGKIDMIAASLFLQTWLDR 111 >gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans OS217] gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217] Length = 141 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 NQ + D GTK IG+A+ A P L + E+ I ++GL Sbjct: 4 NQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F N I + V + DERLTT A+ L ++ + + Sbjct: 64 PLNMDGTEQDITQRAKKFA-NRISGRFGVKVLTQDERLTTADAKARLFELGGYKALTKGQ 122 Query: 136 VDSIAAALILQEVLD 150 VD+++A LI++ + Sbjct: 123 VDAVSAVLIIESYFE 137 >gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581] gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581] Length = 143 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GT+RIG+A+ + R A L + + + F++GLPLN Sbjct: 7 ILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F + R +P DER +T A+ I D R VD Sbjct: 67 MDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYRDDGVDG 125 Query: 139 IAAALILQEVL 149 +AA LIL+ L Sbjct: 126 LAAVLILEGWL 136 >gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L] gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L] Length = 151 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG+KRIG+A D A + R + +L + T + ++GLP +M+ Sbjct: 8 GLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYSMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G + + + + +P + DERLT+ A+ L S + +D A Sbjct: 68 GTLGFQARKVQKLATRLAA-ALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLIDRHA 126 Query: 141 AALILQEVLDR 151 AA+ILQ+ LDR Sbjct: 127 AAIILQQWLDR 137 >gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72] gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72] Length = 156 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 + D G RIG+A+ + R A+P V ++ +++ + E A ++GLP ++ Sbjct: 20 AFDFGLARIGVAVGELETRHANPL-LTVHEEANAARFAIIARLLDEWKPVALVVGLPGHL 78 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138 +G E R F N + + +P DERL++ +A++ L D +S + R +D+ Sbjct: 79 DGREHELAPRCRRFA-NQLHGRFGIPVHLVDERLSSAAAERQLHDAGLSGWQARKPVLDA 137 Query: 139 IAAALILQEVLD 150 +AA LILQ LD Sbjct: 138 VAAQLILQHFLD 149 >gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99] gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99] Length = 140 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q S D GTK IG+AI A P L + + + + ++GL Sbjct: 3 SQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L + R Sbjct: 63 PLNMDGSEQPLTARARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121 Query: 136 VDSIAAALILQEVLD 150 VDS++A +IL+ + Sbjct: 122 VDSLSAVIILESWFE 136 >gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens Pf-5] gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens Pf-5] Length = 145 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+GS F + R VPF DERLTT A+ + L R VD Sbjct: 66 MDGSPSDMCVRAEKFARRLNGR-FNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD + L Sbjct: 125 AIAAALLLQGWLDENAGL 142 >gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens] gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G KRIG+A+ A P + K + IT N A I+GLP ++ Sbjct: 8 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA Sbjct: 68 DRELYTTSAARRFAKQL-HKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126 Query: 141 AALILQEVLDR 151 A +IL++ L + Sbjct: 127 ACVILEQWLQQ 137 >gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium atrosepticum SCRI1043] gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ + + D GTK IG+AI +++T TA L SF E I + Sbjct: 3 NRTLLAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L + + VD+ +A +IL+ + Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136 >gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae WPP163] gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ + + D GTK IG+AI +++T TA L SF E I + Sbjct: 3 NRTLLAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L + + VD+ +A +IL+ + Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136 >gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601] gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. AS9601] Length = 153 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127 FI+G+PL+ G + + + ++ ++ +PF + +E +T S+++ I Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERFGI---- 115 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ ++ LE G Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147 >gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri RM4018] gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction resolvase [Arcobacter butzleri RM4018] Length = 126 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 16/134 (11%) Query: 19 IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +ASID+G KRIG+AI SD P+ ++RK Q A ++ +F+ I I+G Sbjct: 3 LASIDVGLKRIGVAICLTSD----IVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGF 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + + H FV N+++ + +P+ F +E ++++ A++ LI + + KR + Sbjct: 59 PTSSEDMQNRIKH----FV-NLLE--LQIPYEFCEENMSSIEAEE-LIKGEI-KYKRDGR 109 Query: 136 VDSIAAALILQEVL 149 VDS+AA +IL+ L Sbjct: 110 VDSLAAKIILERYL 123 >gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9215] gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9215] Length = 153 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 8/153 (5%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+G KRIGLA DP ++ P + R K Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127 FI+G+PL+ G + + + ++ ++ +PF F +E +T S+ + I Sbjct: 61 TGFIVGIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRFGI---- 115 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ ++ LE G Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147 >gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 139 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG A+ A P + + I A ++GLPLN Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + F + R VP DERLTT A+ + KVD Sbjct: 65 MDGTEQPLTLRAKKFAKRLHGR-FNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVDG 123 Query: 139 IAAALILQEVLDRIS 153 I+A LIL+ + + Sbjct: 124 ISACLILESWFENYA 138 >gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 143 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 21/143 (14%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-------- 70 + + D GTK IG+A+ A P A+ + I +I A Sbjct: 9 VLAFDFGTKSIGVAVGQEVTGTASPL----------DAINAVDGIPNWDIVAKVFEQWQP 58 Query: 71 --FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 I+GLPLNM+GS + + F N ++ K VP DERLTTV A+ L +M Sbjct: 59 DLAIVGLPLNMDGSFQQVTFAAKKFA-NRLNAKYRVPIETVDERLTTVDAKARLFEMGGF 117 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 +K +K+DS +A LI + +++ Sbjct: 118 KKLDKRKIDSASACLIFESWVEQ 140 >gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004] gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004] Length = 141 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GT IG AI +++T TA L +F E ++ Sbjct: 3 NRTIIAFDFGTHSIGTAIG---------------QEITGTARALSAFKAKEGSPSWELIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I+GLPLNM+G+E R F N + + V DERLTT+ A+ Sbjct: 48 KLLKEWQPDLIIVGLPLNMDGTEQLVTAQARKFA-NRLHGRFGVQVELHDERLTTIEARS 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D + KVDS++A +IL+ ++ Sbjct: 107 HLFDHGGYKALDKGKVDSVSAVVILESWFEQ 137 >gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 178 str. F0338] Length = 156 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GT R+G+A +DP + P L R EL + + + ++GLP ++ Sbjct: 4 GVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHLK 63 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G EG R + + KV P V DERL++ A Q L V +D Sbjct: 64 GGEGVSAKGARRYARRV---KVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVID 120 Query: 138 SIAAALILQEVLD--RIS 153 +AA +I++ LD RIS Sbjct: 121 QVAAQIIIEHALDTERIS 138 >gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str. Tucson] gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str. Tucson] Length = 140 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D G+K IG AI A + + ++ + ++GL Sbjct: 3 NRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L D R Sbjct: 63 PLNMDGSEQPVTEQARKFA-NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ R Sbjct: 122 VDSASAVVILESWFGR 137 >gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans 2-40] gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40] Length = 142 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTKRIG A+ A+ + K+ + + + I+GL Sbjct: 3 SQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F N I + VP +DERLTT A+++ + Sbjct: 63 PLNMDGTENELCRRAKKF-GNRIHGRFRVPVEMFDERLTTREAKELAWEEGHKGNYANDP 121 Query: 136 VDSIAAALILQ 146 VDSIAA LIL+ Sbjct: 122 VDSIAARLILE 132 >gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703] gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703] Length = 139 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + T ++ + + I+GL Sbjct: 3 NRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPITARARKFAQRLHGR-FGVAIQLHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD+ +A +IL+ ++ S Sbjct: 122 VDAASAVIILESWFEQQS 139 >gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4] gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4] Length = 151 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL---SFITTENIAAFIIGLP 76 +D+GT RIG+A DP A P V A EL I + ++GLP Sbjct: 12 GLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEYDAVGVVVGLP 71 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++ G E R+F + VP DERLTTV+A L + +K+ + Sbjct: 72 TSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAGRNTRKQRDVI 131 Query: 137 DSIAAALILQEVLD 150 D AA ++LQ +D Sbjct: 132 DQAAAVVLLQAWID 145 >gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter aphrophilus NJ8700] gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700] Length = 139 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG A+ A P + + I A ++GLPLN Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E + F N + + +P DERLTT A+ + R KVD Sbjct: 65 MDGTEQELTLRAKKFA-NRLHGRFNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVDG 123 Query: 139 IAAALILQEVLDRIS 153 I+A LIL+ ++ S Sbjct: 124 ISACLILESWFEQYS 138 >gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens] Length = 172 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 10/132 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79 +DLG + GLAIS G +A PRP V ++ LE +L + F++GLP Sbjct: 17 GVDLGDAKTGLAISLGG--YA-PRPLTVVRQRGDKLLETILQVGIPQRADEFVVGLPKAW 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFV-FW-----DERLTTVSAQQILIDMNVSRKKRI 133 +G + + + R+F + + V + W DE T+ A +IDM +R+ R Sbjct: 74 DGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSRK 133 Query: 134 QKVDSIAAALIL 145 +++D+ AA +L Sbjct: 134 EQLDAYAATALL 145 >gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163] Length = 141 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTK IG+AI A P L + + + + ++GL Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L + R Sbjct: 64 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122 Query: 136 VDSIAAALILQEVLD 150 VDS++A +IL+ + Sbjct: 123 VDSLSAVIILESWFE 137 >gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96] gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96] Length = 140 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTK IG+AI A P L + + + + ++GL Sbjct: 3 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F N + + V DERL+TV A+ L + R Sbjct: 63 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121 Query: 136 VDSIAAALILQEVLD 150 VDS++A +IL+ + Sbjct: 122 VDSLSAVIILESWFE 136 >gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 156 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + +D G ++G+A+ + + A P ELL I + ++ IIGLP Sbjct: 12 ETVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLP 71 Query: 77 LNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 LNM+GS + + F H++ + P + DERLT+ A+ + + + + + Sbjct: 72 LNMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSDK 131 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 + +DSIA+A++L S+L S +G Sbjct: 132 -EPIDSIASAIMLG------SWLRSGEG 152 >gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM 10152] gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 180 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74 ID+G+ RIG+A SDP A P + R K V+ + + I+G Sbjct: 23 GIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYEAVEVIVG 82 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + G +G + AF + V DERLTTVSA + L D V + + Q Sbjct: 83 LPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGVRARGQRQ 142 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA ILQ LD S + S G Sbjct: 143 VIDQAAAVSILQGWLDERSAVMRSVG 168 >gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003] gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003] Length = 146 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + + A P + + E+ I A ++GLP++ + Sbjct: 13 AFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVGLPMHPD 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ R F N ++ + +P + DER ++V A+ L + K R ++D+ A Sbjct: 73 GTPHEMTQLARRF-GNQLNGRFNLPVTWVDERYSSVEAEAGL----RATKGRADRLDAEA 127 Query: 141 AALILQEVLDRIS 153 A++ILQ+ LD +S Sbjct: 128 ASIILQQYLDGLS 140 >gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65] gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65] Length = 154 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 10/152 (6%) Query: 14 KPNQPIASI---DLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTE-N 67 KP + I + D GTKR+G+A+ G+R + + K + E L + E Sbjct: 5 KPTEKIKRVMGFDFGTKRMGVAM---GQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQ 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 F++GLP NM+GSE F + R +P DERLTT A+ I Sbjct: 62 PDGFVVGLPFNMDGSESDMSRRANKFSKRLHGR-YGLPSYTIDERLTTFEAKHIARQQGH 120 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 + VD +AA IL+ L E S+ Sbjct: 121 KGHYKSDPVDELAAQFILETWLSEFPLSEQSQ 152 >gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens Pf0-1] gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens Pf0-1] Length = 145 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + R +PF DERLTT A+ + L+ R VD Sbjct: 66 MDGTPSEMCARAEKFARRLNGR-FNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFLESS 158 +IAAAL+LQ LD + L S Sbjct: 125 AIAAALLLQGWLDENTALFES 145 >gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ I + D GTK IG+AI +++T TA L SF E I + Sbjct: 3 SRTILAFDFGTKSIGVAIG---------------QEITGTARPLTSFKAQEGIPDWQKVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIALHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L + + VD+ +A +IL+ + Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136 >gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212] gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212] Length = 161 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G KR+G+AI + AHP + + + + + I T F++G+PL+ Sbjct: 23 ILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGMPLH 82 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G ++ F + R +P V DER T+ A IL + V +++ +D Sbjct: 83 SDGIVHELTQLSQRFARRLAGR-FNIPVVMQDERYTSQIASTILREAGVVGREQKSVLDQ 141 Query: 139 IAAALILQEVLD 150 IAA ILQ D Sbjct: 142 IAAQQILQSFFD 153 >gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A] gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A] Length = 136 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A + R+ T +L I T ++GLP+ M+ Sbjct: 2 GLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILMD 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 GS G + + F N I + +P + DER T++ A + ++ RK + VD Sbjct: 62 GSLGSQAKQIQKF-GNRISTILNLPIEYIDERFTSLEA---VSELKAQRKYSSYEKGLVD 117 Query: 138 SIAAALILQEVLDR 151 AA +ILQ LD+ Sbjct: 118 CYAAKIILQRWLDQ 131 >gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563] gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563] Length = 141 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D G K+ G A D + P + + L+ I +NI + GLPL+ Sbjct: 2 VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-- 136 G E R F ++ + V V VF DE T+ A IL RKK ++K Sbjct: 62 DEGKESEWCSEIRRFSDFLL-KSVKVNVVFVDEYGTSKEADYIL----RGRKKNVKKKAN 116 Query: 137 DSIAAALILQEVLD 150 D IAAALIL+ L+ Sbjct: 117 DLIAAALILENYLN 130 >gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 138 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 19/141 (13%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI--TTEN--IAAFIIG 74 I +ID G KR G AISDP + +V VT + + + ++ TEN I F++G Sbjct: 4 IVAIDYGEKRTGFAISDPLK-------MIVSSFVTVLSRKAVMYLKNCTENYDIELFVLG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKK 131 P M+ + + F N+ R+V +P + DER T+V A +I+I+ V + K Sbjct: 57 EPRQMDYTPSENMPRVEKFKRNL--RRV-IPSIDVQMVDERFTSVLAHRIMIEGGVKKIK 113 Query: 132 RIQK--VDSIAAALILQEVLD 150 R K VD ++AA++LQ L+ Sbjct: 114 RQDKGLVDRLSAAILLQTYLE 134 >gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella blandensis MED217] gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella blandensis MED217] Length = 134 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I ++D GTKR G+A++D + A T ELL F+ EN+ ++G Sbjct: 4 ILALDFGTKRTGIAVTDELQLIASGL-------TTVNTKELLDFLKKYFAEENVELILLG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P MN +E V + +++ +P DER T+ A Q ++D + +K+R Sbjct: 57 EPKRMN-NEASHVEAEILKFRESLEKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKN 115 Query: 135 K--VDSIAAALILQEVL 149 K +D I+A +ILQ L Sbjct: 116 KALLDEISATIILQTYL 132 >gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916] gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916] Length = 157 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D+G KRIGLA DP P P + R + Q L + TT + A ++GLPL+ Sbjct: 9 VLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVVGLPLD 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G + + + + + +P + +E ++ +A + +++ R R+ DS Sbjct: 69 DKGQRTAQAEHCERYGRRLA-QTLALPLAWVNEHSSSWAAGESR-NLHGDRSGRL---DS 123 Query: 139 IAAALILQEVL 149 AAAL+L++ L Sbjct: 124 EAAALLLEQWL 134 >gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN] gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae Br4923] gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 184 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 1/146 (0%) Query: 8 DLVKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 DL K+L P + ID+G+ RIG+A SDP A P + R + + L + Sbjct: 16 DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 + ++GLP + G + R VP DERLTTVSAQ++L Sbjct: 76 QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRI 152 V K + +D AA +ILQ LD+ Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQC 161 >gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2] Length = 144 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+A+ A P L + + ++GL Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PLNM+G+E + F + + R KV V DERLTT A+ +L ++ +K + Sbjct: 66 PLNMDGTEQEVTQRAKKFANRLHGRFKVAVDLC--DERLTTTDAKSMLFELGGYKKLTKE 123 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 K+DS++A +I S++E+ G Sbjct: 124 KIDSVSACVIF------TSWVENQYG 143 >gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906] gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ + D GTK IG+AI ++VT TA L SF + I + Sbjct: 3 NRTVMGFDFGTKSIGVAIG---------------QEVTGTARPLASFKAKDGIPDWSQIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E + F N + + V DERL+TV A+ Sbjct: 48 KIIKEWQPDLVVVGLPLNMDGTEQLVTTQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L + R VD+ +A +IL+ +R Sbjct: 107 HLFEQGGYRSLDKGSVDATSAVIILESWFER 137 >gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM 14884] gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM 14884] Length = 141 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA D RFA R +L R + + +F E ++GLPL Sbjct: 3 VVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +GS + V + R+ + DER TT AQ + + +++ ++D Sbjct: 63 TDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRLDE 120 Query: 139 IAAALILQEVL 149 AA IL+ L Sbjct: 121 AAAVAILETYL 131 >gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein) [Campylobacter lari RM2100] gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein) [Campylobacter lari RM2100] Length = 128 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ + A P ++RK Q A E+ +I ++ ++G+PL Sbjct: 5 ALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPLG-G 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE F+ + D++V+ F DE ++ +AQ++ + V+ KK+ K+DS+ Sbjct: 63 SSEDEMRKRVEHFISLLDFDKEVF----FVDESFSSKNAQELGM---VNLKKKDGKLDSL 115 Query: 140 AAALILQE 147 AA L L++ Sbjct: 116 AAYLFLKD 123 >gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor lactoaceticus 6A] gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor lactoaceticus 6A] gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 138 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G R+G+AISDP + A P + + EL S +I +IG PL+ Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDSIFQRFSIEKVVIGYPLS 61 Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKV 136 ++ + + I + V V WDER +T + ++++ ++N RKK++ + Sbjct: 62 KLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVERVMNEELNWKRKKKV--I 119 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 120 DKVAAVYILQGYLD 133 >gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c] gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c] Length = 143 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 31/148 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 + + D GTK IG+A+ ++VT TA L + + I + Sbjct: 9 VLAFDFGTKSIGVAVG---------------QEVTGTASPLDAIKAVDGIPNWDVVAKVF 53 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+G+ + + F N + K VP DERLTTV A+ L Sbjct: 54 EQWQPDLALVGLPLNMDGTFQQVTFAAKKF-GNRLSAKYRVPVETVDERLTTVDAKARLF 112 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDR 151 +M +K QK+DS +A LI + +++ Sbjct: 113 EMGGFKKLDKQKIDSASACLIFESWVEQ 140 >gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. NATL2A] gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. NATL2A] Length = 144 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + S+D+G KRIG+A DP G H P + R + E + I G PL Sbjct: 9 VLSLDIGDKRIGIAGCDPLGISITH-LPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG E + + + + + + +P F +E +TV A++ N + ++D Sbjct: 68 DMNGMETKQSIRCKKYGIKLA-KCLKLPLAFINEHCSTVEAKEKFSLKN----DKTGRID 122 Query: 138 SIAAALILQEVL 149 S AAA++LQ+ L Sbjct: 123 SAAAAILLQQWL 134 >gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002] gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002] Length = 142 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D G +RIG+A+ + AHP + + Q + I A ++G Sbjct: 2 PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E +R F N + + +P DER T++ A+ +L + V +K+ Sbjct: 62 LPVHADGTEHDLTRLSRRFA-NRLKGRFGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA ILQ ++ Sbjct: 121 ALDQVAAQAILQTWFEQ 137 >gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM 9941] gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM 9941] Length = 139 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P +A++DLG G+A+SDP R A P L + ++ L + E + ++G Sbjct: 4 PEGRVAALDLGEVWTGVAVSDPTRTLARP---LEVVRTSELPGVLRRLVREEGVGEVLVG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + G G + + ++ V FV WDERLTT L + ++ + Sbjct: 61 LPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR--E 118 Query: 135 KVDSIAAALILQEVLD 150 +VD +AAA +LQE L+ Sbjct: 119 RVDHLAAARMLQEYLE 134 >gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii ATCC BAA-894] gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894] Length = 138 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ----TALE-LLSFITTENIAAFIIGL 75 + D GTK IG+AI R A RP K T +E LL +++ I+GL Sbjct: 7 AFDFGTKSIGVAIGQ--RVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDV---IVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N + + + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARTFA-NRLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836] gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836] Length = 152 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 12/137 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT-TENIAAF--IIGLPL 77 ++D+G RIG+A SDP A P + V + +L +T ++ AF ++GLP Sbjct: 8 ALDIGDARIGVASSDPHGILATPV-----ETVRRGPGDLDRIVTLVADLEAFEIVVGLPR 62 Query: 78 NMNGSEGP---RVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 ++NG EGP ++ +T V ++ R+V DER TTV+A+++L + KR Sbjct: 63 SLNGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRERGKKGSKRR 122 Query: 134 QKVDSIAAALILQEVLD 150 VD AA +ILQ LD Sbjct: 123 AVVDQAAAVVILQHALD 139 >gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638] gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638] Length = 138 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P + + T + + A I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGLPLNMD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E P R F N I + DERL+TV A+ L + R VDS + Sbjct: 67 GTEQPLTARARKFA-NKIHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGSVDSAS 125 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 126 AVIILESFFEQ 136 >gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM 3043] gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM 3043] Length = 148 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GT+RIG+A+ + A L + ++ + + ++GLPLN Sbjct: 9 VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F N + + P +DER +T +A++I D R VD Sbjct: 69 MDGTESDMSRRARKF-GNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127 Query: 139 IAAALILQEVLDRISFLE 156 IAA LIL+ +FL+ Sbjct: 128 IAAQLILESFFADDTFLQ 145 >gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7] gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7] Length = 137 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + + D GTK+IG+AI + R A P L Q + + ++G Sbjct: 5 PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL +GSE R F N + + V V DER +++ AQQ+L + Sbjct: 65 LPLATDGSEQYASLRCRRFA-NQLHGRFGVETVLVDERGSSMEAQQMLGNNTDD------ 117 Query: 135 KVDSIAAALILQEVLDRIS 153 D++AAA+ILQ LD ++ Sbjct: 118 --DAVAAAIILQRYLDGLA 134 >gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1] gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1] Length = 147 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q I + D GT+++G+AI + P K +LL + F++GL Sbjct: 7 HQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGL 66 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + ++ DERLTT A+ L + + Sbjct: 67 PLNMDDSESELSARARKFARRLRHQTNITTWMV-DERLTTREARDELESYQEQGRAKKIA 125 Query: 136 VDSIAAALILQ 146 DSIAA+L++Q Sbjct: 126 ADSIAASLLIQ 136 >gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ I + D GTK IG+AI +++T TA L SF E I + Sbjct: 3 SRTILAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + V DERL+TV A+ Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L + + VD+ +A +IL+ + Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136 >gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703] gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703] Length = 151 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D HP + + + + F++G Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 123 SVLDQVAAQAILQGFFE 139 >gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301] gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301] Length = 153 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+G+KRIGLA DP ++ P + R + Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127 FI+G+PL+ G + + + ++ ++ +PF + +E +T S+++ I Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERFGI---- 115 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ ++ LE G Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147 >gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans SRS30216] gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans SRS30216] Length = 188 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 ++D+G+ R+GLA DP A P LVR + ++ A I+ GLPL++ Sbjct: 8 AVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEIVLGLPLSL 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GSEGP + ++ VP DERL+TV A + L + K+ VD Sbjct: 68 DGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQFRAVVDQA 127 Query: 140 AAALILQEVLD 150 AA ++LQ LD Sbjct: 128 AAVVLLQATLD 138 >gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1] gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GL 75 Q + D GTK IG+A+ A P ++ + +++ + E F++ GL Sbjct: 4 QTLLGFDFGTKSIGVAVGQELTGSARPLT-AIKAQDGIPDWQVIEKLLKEWQPDFVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N + + + DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTDRARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGS 121 Query: 136 VDSIAAALILQEVLD 150 VDS +AA+ILQ+ + Sbjct: 122 VDSQSAAIILQDWFE 136 >gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum] Length = 168 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 13/142 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFI----TTENIAA 70 + ID G +R+G+A+SDP R A P LVR Q +LL+ + T ++ Sbjct: 11 LMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDVTG 70 Query: 71 FIIGLP-LNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 + G+P +++G P H+ V + R + +P DE ++ +A++I + Sbjct: 71 LVFGIPYYHLSGD--PNPHAPLFLRVARDLSRDLALPLFLHDEGQSSEAAREIR-KGHPG 127 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R+ Q +D +AAA +LQ LD Sbjct: 128 RRNSAQSLDHVAAATLLQGFLD 149 >gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus ATCC 35316] gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus ATCC 35316] Length = 138 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 11/136 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENIAAFIIGL 75 + D GTK IG+A+ R RP K T LL +++ I+GL Sbjct: 7 AFDFGTKSIGVAVGQ--RITGTARPLTALKANDGTPDWNLIERLLKEWQPDDV---IVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARKFA-NKIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 138 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 11/136 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENIAAFIIGL 75 + D GTK IG+A+ R RP K T LL +++ I+GL Sbjct: 7 AFDFGTKSIGVAVGQ--RITGTARPLTALKANDGTPDWNLIERLLKEWQPDDV---IVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARKFA-NKIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1] gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1] Length = 178 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 4/137 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIA-AFIIGLP 76 ID+G+ RIG+A SDP A P + R K + ++ I E A I+GLP Sbjct: 23 GIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAVEVIVGLP 82 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G G F + + +P DERLTTV+A + L + VS + + + Sbjct: 83 QTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSARGQRPVI 142 Query: 137 DSIAAALILQEVLDRIS 153 D AA ILQ LD S Sbjct: 143 DQAAAVAILQGWLDERS 159 >gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4] gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4] Length = 178 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 4/137 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIA-AFIIGLP 76 ID+G+ RIG+A SDP A P + R K + ++ I E A I+GLP Sbjct: 23 GIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAVEVIVGLP 82 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G G F + + +P DERLTTV+A + L + VS + + + Sbjct: 83 QTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSARGQRPVI 142 Query: 137 DSIAAALILQEVLDRIS 153 D AA ILQ LD S Sbjct: 143 DQAAAVAILQGWLDERS 159 >gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens NRL30031/H210] gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens NRL30031/H210] Length = 151 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D HP + + + + F++G Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 123 SVLDQVAAQAILQGFFE 139 >gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus] Length = 258 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TAL---ELLSFITTENIA 69 P+ +D+ G+A+SD + A P + R++ T+ AL +L + + Sbjct: 97 GSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLDPALVIGKLREIVEDCSAC 156 Query: 70 AFIIGLPLNMNG-SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++G PL+ +G +EG + + + KV +P +DER+T+V A+ IL D + Sbjct: 157 GLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLG 216 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 RK ++ D AA +ILQ LD Sbjct: 217 RKI-AEREDETAAMVILQGFLD 237 >gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium genitalium ATCC 33030] gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium genitalium ATCC 33030] Length = 167 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ID+GT RIG+A SD A P R + + LL I+ + ++GL Sbjct: 20 GIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDAVEVVVGL 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++ G+ V + + R VP F DERLTTV A L V+ + Sbjct: 80 PRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVNARDGRAV 139 Query: 136 VDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 140 IDQAAAVAILQSWLD 154 >gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320] gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320] Length = 139 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ + D GTK IG AI ++VT TA L SF + I + Sbjct: 3 NRTVMGFDFGTKSIGAAIG---------------QEVTGTARPLASFKAKDGIPDWSQIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E + F N + + V DERL+TV A+ Sbjct: 48 KIIKEWQPDLVVVGLPLNMDGTEQLVTTQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L + R VD+ +A +IL+ +R Sbjct: 107 HLFEQGGYRSLDKGSVDATSAVIILESWFER 137 >gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237] gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 13/140 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R G+A++D + A + K++ L +++ TE + ++G P Sbjct: 4 IVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDF---LKNYVATEKVELLVVGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVF---WDERLTTVSAQQILIDMNVSRKKRIQ 134 MN +V + A + I++ K P + DER T+ A Q +ID + +K+R Sbjct: 61 MNN----QVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRD 116 Query: 135 K--VDSIAAALILQEVLDRI 152 K VD I+A +ILQ L+RI Sbjct: 117 KALVDEISATIILQAYLNRI 136 >gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM 20595] gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM 20595] Length = 153 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+GLP NM+GSEG + R + + R V DERLTTVSA Q+L + Sbjct: 56 VIVGLPRNMDGSEGKSAKNARRWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEI 115 Query: 131 KRIQKVDSIAAALILQEVL 149 VD +AA +IL+ L Sbjct: 116 NHRSVVDQVAAVIILESAL 134 >gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160] gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160] Length = 146 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 + D G KRIG+A+ + R A P +V+ + + E L + E A ++GLP++ Sbjct: 13 AFDYGEKRIGVAVGNSLTRRARPL-VVVQNRSKEYRFEALGKLIAEWKPDALVVGLPMHP 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ R + F N ++ + +P + DER ++V A+ + N R +D+ Sbjct: 72 DGTPHERTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAEIRAGNA----RADMLDAE 126 Query: 140 AAALILQEVLDRIS 153 AA++ILQ+ LD ++ Sbjct: 127 AASIILQQYLDGLT 140 >gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Rv] gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis CDC1551] gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis AF2122/97] gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Ra] gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis F11] gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Ra] gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis 02_1987] gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis 94_M4241A] gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis T92] gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis EAS054] gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis GM 1503] gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis T17] gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN 1435] gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis CPHL_A] gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis T46] gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis K85] gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis K85] gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85] gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85] gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis 210] gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis KZN 4207] gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis KZN R506] gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis SUMu001] gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis SUMu003] gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis SUMu005] gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis SUMu012] gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis KZN V2475] gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Ra] gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85] gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85] gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis SUMu001] gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis SUMu003] gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis SUMu005] gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis SUMu012] gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis CDC1551A] gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148] gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 170 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 54/130 (41%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID+G RIG+A SDP A P + R + + L + I+GLP + Sbjct: 26 GIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLA 85 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + R P DERLTTVSAQ+ L V ++ +D A Sbjct: 86 DRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAA 145 Query: 141 AALILQEVLD 150 A ILQ LD Sbjct: 146 AVAILQSWLD 155 >gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii ATCC 12478] Length = 141 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 54/124 (43%) Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87 RIG+A SDP A P + R + + L++ ++GLP + GP Sbjct: 2 RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61 Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147 + R P DERLTTVSAQ+ L + K++ +D AA ILQ Sbjct: 62 QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121 Query: 148 VLDR 151 LD+ Sbjct: 122 WLDQ 125 >gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 164 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 17/149 (11%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA----------LELLSFITTENIAA 70 +D+GT RIG+A+SD R A P + R VT +EL+ F + Sbjct: 20 GLDVGTVRIGVAVSDRDARLAMPVETVDR--VTNFGDDDGADVDRLVELIGFYGAVEV-- 75 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLP ++ G+ V + R VP DERLTTV+A L VS K Sbjct: 76 -VVGLPRDLKGNGSKSVKHAEDIAARLRAR-CGVPVRMGDERLTTVAATHALRASGVSAK 133 Query: 131 KRIQKVDSIAAALILQEVLD-RISFLESS 158 + +D AA ILQ LD R++ L+ + Sbjct: 134 AGRKVIDQAAAVEILQSWLDGRLTTLKET 162 >gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor hydrothermalis 108] gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor hydrothermalis 108] Length = 138 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +D+G R+G+AISDP + A P + + EL +I +IG PL+ Sbjct: 3 ILCLDMGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQRYSIEKVVIGYPLS 61 Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136 ++ + + I + V V WDER +T + ++++ ++N RKK++ + Sbjct: 62 KLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVEKVINGELNWKRKKKV--I 119 Query: 137 DSIAAALILQEVLD 150 D +AA ILQ LD Sbjct: 120 DKVAAVYILQGYLD 133 >gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_27] gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_27] Length = 138 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 ++D+G RIG+A SD A P + RKKV +++ ++ I EN I+ G+P ++ Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136 +G E + R ++ + + + DER +TV A IL ++N + K+++ V Sbjct: 64 DGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRKV--V 121 Query: 137 DSIAAALILQEVLD 150 D +AA++ILQ LD Sbjct: 122 DKVAASIILQTYLD 135 >gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922] gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922] Length = 132 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 13/137 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIGLP 76 ++D G KR G+A++D + A P L K EL +F T E ++ +IGLP Sbjct: 2 ALDFGEKRTGIAVTDELQIIATPVDTLETK-------ELFNFFETYFAKEKVSELVIGLP 54 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135 + +G P + + F+ +P +E T+ A Q I + +K R K Sbjct: 55 MKFSGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKG 114 Query: 136 -VDSIAAALILQEVLDR 151 +D I+A +ILQ L + Sbjct: 115 SLDKISATIILQSFLSK 131 >gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 140 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF---ITTENIAAFIIGLPLN 78 +D G R GLA+SDP R A P + + T L L + I A ++GLPL Sbjct: 1 MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLT 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G E R V + R++ +PF + E L++ A L + + +KR +D Sbjct: 61 QDGKESLTTRQVRN-VTQRLKRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQ 119 Query: 139 IAAALILQEVL 149 AA IL L Sbjct: 120 QAAVRILSSFL 130 >gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens SBW25] gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6] gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens SBW25] gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6] Length = 145 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137 M+G+ F + R +PF DERLTT A+ D + R VD Sbjct: 66 MDGTPSDMCLRAEKFARRLNGR-YNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFLESS 158 +IAAAL+LQ LD + L S Sbjct: 125 AIAAALLLQGWLDENTALFES 145 >gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma australiense] gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma australiense] Length = 140 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG K +G+A+S+ G + F + Q L I I I+G P +M Sbjct: 2 GLDLGEKTLGIALSETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPKHM 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 N G + + F + V + WDERL+TV + +IL N +KK D I Sbjct: 62 NNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKDVI 121 Query: 140 AAALILQEVLD 150 AA +ILQ LD Sbjct: 122 AATIILQNYLD 132 >gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822] gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822] Length = 142 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G +R+G+A D A +VR +L + ++GLP MN Sbjct: 8 GLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCMN 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + + + I + + +P + DERLT+ A++ L + +D A Sbjct: 68 GDIGSQARQVQNYATR-IGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQA 126 Query: 141 AALILQEVLD 150 AA+ILQ+ LD Sbjct: 127 AAIILQQWLD 136 >gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium K411] gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium K411] Length = 155 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79 +D+GT RIG+AISDP A P ++ ++ + I +N + ++GLP+ + Sbjct: 19 GLDVGTVRIGVAISDPDCILATPVE-TIQATADDADVQRVVEICRDNFVVEIVVGLPVAL 77 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G+ + F + + +P DER++T++A V+ KK +K+D Sbjct: 78 RGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGRKKIDQA 137 Query: 140 AAALILQEVLD 150 AA ILQ LD Sbjct: 138 AAVHILQGWLD 148 >gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1] gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1] Length = 148 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTKRIG+A+ + A P + +K + + AA ++GLP N + Sbjct: 12 AFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPAALVVGLPCNDD 71 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ +R F N + + +P + DER T+ +A L + +K+ +D A Sbjct: 72 GTPHEMTALSRRFA-NRLKGRFNLPTLLIDERYTSAAASSALDKEGIHGRKQKNLIDQYA 130 Query: 141 AALILQEVLDRIS 153 A ILQ D S Sbjct: 131 AQQILQAYFDEPS 143 >gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali] gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali] Length = 145 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 P +DLG K +G++IS+ G + + L+ L I +NI I+GLP Sbjct: 6 PYLGLDLGEKTLGISISEAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGLP 65 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +MN G + + F + D K+ V + WDERL+T + L + N ++KK Q Sbjct: 66 KHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQL 125 Query: 136 VDSIAAALILQEVLDRIS 153 D +AA ILQ LD S Sbjct: 126 KDEVAAMFILQNFLDYQS 143 >gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae T3T1] Length = 139 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 31/148 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG A+ + +T TA L +F + I + Sbjct: 7 AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIEKCLKD 51 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLPLNM+G+E + F N ++ + + DERLTTVSA+ + Sbjct: 52 WKPDVIVVGLPLNMDGTEQDLTLRAKKFA-NRLNGRFGIKVELQDERLTTVSARDEIFQR 110 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153 R KVD I+A LIL+ + S Sbjct: 111 GGYRALNKGKVDGISACLILESWFENYS 138 >gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8] gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8] Length = 164 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 16/151 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G +RIGLAI+DP A P L R + + FI + ++G PL+ Sbjct: 7 ILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVVVGNPLH 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-------- 130 +GS P+ AF + + + DERLTT+ A +L S + Sbjct: 67 ADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTAGRSHGK 126 Query: 131 --KRIQKVDSIAAALILQEVLDRISFLESSK 159 R +D +AA L+L+ SFL K Sbjct: 127 TIDRKDLIDQVAATLLLE------SFLSGDK 151 >gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 140 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GTK IG A+ R A P + + + ++GLPLN Sbjct: 5 VLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPLN 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F N ++ + V DERLTT A+ + + + KVD Sbjct: 65 MDGTEQELTTRARKFA-NRLNGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVDG 123 Query: 139 IAAALILQEVLDR 151 I+A LIL+ ++ Sbjct: 124 ISACLILESWFEK 136 >gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia succiniciproducens MBEL55E] gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 140 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 31/148 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG A+ + +T TA L +F I + Sbjct: 9 AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQNGIPNWDSIEKCLKE 53 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLPLNM+G+E R F N + + V DERLTT A+ + Sbjct: 54 WKPDILVVGLPLNMDGTEQEFTSRARKFA-NRLHGRFGVKVELQDERLTTTEARTEIFQR 112 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153 + KVD I+AALIL+ +R S Sbjct: 113 GGYKALNKSKVDGISAALILESWFERHS 140 >gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis z3032] gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032] Length = 138 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ----TALE-LLSFITTENIAAFIIGL 75 + D GTK IG+AI R A RP K T +E LL +++ I+GL Sbjct: 7 AFDFGTKSIGVAIGQ--RVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDV---IVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N + + + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTSRARTFA-NRLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 140 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78 ID G RIG+A+SD A + ++ T+ + +AA +IGLP Sbjct: 6 GIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVIGLPRR 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G G R +++ + ++ DER TTV A ++L + V ++++ VD Sbjct: 66 TDGKIGVSEEKARQL-GDLLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKRSVVDQ 124 Query: 139 IAAALILQEVLD 150 +AA +ILQ+ L+ Sbjct: 125 VAAEIILQDFLE 136 >gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM 266] gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM 266] Length = 142 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 7/142 (4%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAA 70 L + I +ID GTKRIGLA +DP + FA R T LL + N I Sbjct: 2 GLTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFER----TTLFALLEKMAANNEIEK 57 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G PL+ + S F+ + +P DE ++ A QILI +K Sbjct: 58 ILVGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKK 117 Query: 131 KRIQK--VDSIAAALILQEVLD 150 R +K +DS AA +IL++ L+ Sbjct: 118 ARKEKGRIDSAAACVILRDYLE 139 >gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 139 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ I + D GTK IG+AI +++T TA L SF E I + Sbjct: 3 SRTILAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E P R F N + + + DERL+TV A+ Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGIAIELHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L + + VD+ +A +IL+ + Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136 >gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis OL] gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis OL] Length = 138 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77 I +D+G R+G+AISDP + A P + K EL +I +IG PL Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELKNKDLFDELDKIFQRYSIEKVVIGYPLS 61 Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKR 132 ++ + ++ + I + V V WDER +T + ++++ ++N RKK+ Sbjct: 62 KLHPDLKDEKLKKIDE----ISEKIGSRYNVEIVKWDERFSTKAVERVMNEELNWKRKKK 117 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA ILQ LD Sbjct: 118 V--IDKVAAVYILQGYLD 133 >gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515] gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. MIT 9515] Length = 151 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 10 VKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP ++ I S+D+GTKRIGLA D + P L R+K + S I N+ Sbjct: 1 MKYSKPKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+GLPL+ G + + + + + ++ +PF F +E +T ++ Sbjct: 61 TGFIVGLPLDDKGRMTSQAFDCKTYGEYLFN-ELKLPFSFVNEHSSTWESENRF----GV 115 Query: 129 RKKRIQKVDSIAAALILQE 147 +K + +DS++A +IL++ Sbjct: 116 KKDKSGLIDSLSAKVILEQ 134 >gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586] gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586] Length = 143 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + ++ + A I+GL Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARKFSQRLQGR-FGVTVELHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053] gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053] Length = 137 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 11/139 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G KR G+A++DP + A + ++T L + +E + AF++G+P ++ Sbjct: 6 AIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDF---LKKYTLSEQVEAFVVGMPKKLD 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 ++ AFV ++ + DER T+ A Q +I + R K +D Sbjct: 63 NTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGNIDK 122 Query: 139 IAAALILQEVLDRISFLES 157 ++A +ILQ SF+ES Sbjct: 123 VSATIILQ------SFMES 135 >gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis HAW-EB3] gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3] Length = 139 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+AI A+P + E+ I ++GLPLN Sbjct: 6 VLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSE + F N I+ + V DERLTT A+ L +M + +VD+ Sbjct: 66 MDGSEQEMTQRAKKFA-NRINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVDA 124 Query: 139 IAAALILQEVLDRI 152 ++A LI++ + + Sbjct: 125 MSAVLIIESYFENL 138 >gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina NCIMB 400] gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB 400] Length = 139 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 31/149 (20%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF----- 71 Q + D GTK IG+AI + +T +A LLS + I + Sbjct: 4 QTVLGFDYGTKSIGVAIG---------------QAITASATPLLSIKAVDGIPNWDDIDK 48 Query: 72 ----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 ++GLPLNM+G+E R F N I+ + V DERLTT A+ Sbjct: 49 LLKEWQPDLVVVGLPLNMDGTEQEMTQRARKFA-NRINGRFGVKIATQDERLTTADAKAR 107 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L ++ + +VD+++A LI++ + Sbjct: 108 LFELGGFKALTKGQVDAVSAVLIIESYFE 136 >gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus parainfluenzae ATCC 33392] gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus parainfluenzae ATCC 33392] Length = 139 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 31/148 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG A+ + +T TA L +F + I + Sbjct: 7 AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIEKCLKD 51 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLPLNM+G+E + F N ++ + + DERLTTVSA+ + Sbjct: 52 WKPDVIVVGLPLNMDGTEQDLTLRAKKFA-NRLNGRFGIKVELQDERLTTVSARDEIFQR 110 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153 R KVD I+A LIL+ + S Sbjct: 111 GGYRALNKGKVDGISACLILESWFESYS 138 >gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424] gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424] Length = 151 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KR+G+A D A + R + + +I ++GLP +MN Sbjct: 9 GLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSMN 68 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ G + + + + + + +P + DERLT+ A++ L VD A Sbjct: 69 GTLGSQAKQVQNYATRLA-KALQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQA 127 Query: 141 AALILQEVLDR 151 AA+ILQ+ LD+ Sbjct: 128 AAIILQQWLDQ 138 >gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12] gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12] Length = 138 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ D G KRIG+A+ A P + + + + A I+G Sbjct: 2 PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P ++G E + R F + ++ +P DERLTTV A+ L RK + Sbjct: 62 IPTCIDGREQYTTSAARRFAKEL-RKRFTLPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120 Query: 135 KVDSIAAALILQEVL 149 +VDSIAA +IL++ L Sbjct: 121 EVDSIAACVILEQWL 135 >gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens BL2] Length = 150 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 +D+G+ RIG+A SDP A P +VR+ AL+ L I E +IG P ++ Sbjct: 2 GLDIGSVRIGVAASDPDGILATPL-TVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS + F I P DER TTV A L + ++R + VD+ Sbjct: 61 DGSARAAAATALEFAKR-ISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119 Query: 140 AAALILQEVLD 150 AA +ILQ L+ Sbjct: 120 AAVIILQNALE 130 >gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937] gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937] Length = 143 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + ++ + A I+GL Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC 51908] gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908] Length = 139 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + D GTK IG+AI A+P + E+ I ++GL Sbjct: 3 SQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE + F N I + V DERLTT A+ L +M + + Sbjct: 63 PLNMDGSEQEMTQRAKKFA-NRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQ 121 Query: 136 VDSIAAALILQEVLDRI 152 VD+++A LI++ + + Sbjct: 122 VDAMSAVLIVESYFESL 138 >gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M] gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M] Length = 146 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A P + + E+ I A ++GLP++ + Sbjct: 13 AFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVGLPMHPD 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ + F N ++ + +P + DER ++V A+ + K R +D+ A Sbjct: 73 GTPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAT----TRANKGRADMLDAEA 127 Query: 141 AALILQEVLDRIS 153 A++ILQ+ LD +S Sbjct: 128 ASIILQQYLDGLS 140 >gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group II '5-way CG'] Length = 171 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 18/150 (12%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTE-NIA 69 P+ ID G RIGLAISD RF+ P F+ ++ + + L I TE I Sbjct: 17 PLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKKIR 76 Query: 70 AFIIGLPL-NMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTT--VSAQQILID 124 I G+P +++G P+ + FV +I P WDE LT+ + +++I Sbjct: 77 GIIFGVPWYHLSGDPNPK---SEIFVEYARLIRSLTGCPVFLWDEGLTSDVLKSERISGK 133 Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152 SR K+ +D +A LILQ LD Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163 >gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium glutamicum ATCC 13032] gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium glutamicum ATCC 13032] gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Corynebacterium glutamicum ATCC 13032] gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium glutamicum ATCC 13032] Length = 182 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 18/150 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---------LLSFITTENIAAF 71 +D+GT RIG+A SD + A P + R +T + L++ + N Sbjct: 20 GLDVGTVRIGVAASDRDAKLAMPVETVPR----ETGFKGPDLADIDRLVAIVEEYNAVEV 75 Query: 72 IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+GLP ++ G+ V + + + +P DERLTTV A Q L V Sbjct: 76 IVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGV 135 Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLE 156 S K + +D AA ILQ LD R LE Sbjct: 136 SEKAGRKVIDQAAAVEILQTWLDARTRALE 165 >gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium glutamicum R] gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R] Length = 182 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 18/150 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---------LLSFITTENIAAF 71 +D+GT RIG+A SD + A P + R +T + L++ + N Sbjct: 20 GLDVGTVRIGVAASDRDAKLAMPVETVPR----ETGFKGPDLADIDRLVAIVEEYNAVEV 75 Query: 72 IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+GLP ++ G+ V + + + +P DERLTTV A Q L V Sbjct: 76 IVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGV 135 Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLE 156 S K + +D AA ILQ LD R LE Sbjct: 136 SEKAGRKVIDQAAAVEILQTWLDARTRALE 165 >gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K] gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K] Length = 144 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLPLNM 79 IDLG R G AISD + + P ++K LE+ + I +IGLP+ + Sbjct: 6 IDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIGLPIKI 65 Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 N + ST FV N +++++ +P F +E ++V A + +M ++K I V Sbjct: 66 NNE---KTKST-IFVENFKKHLEKEINLPIFFVNEYNSSVLANLSINEMKSKKRKTI--V 119 Query: 137 DSIAAALILQEVLDR 151 D I+A +IL + L+ Sbjct: 120 DKISAQIILNDFLNN 134 >gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis JLW8] gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8] Length = 156 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + + D G +RIG+A+ + A P + + + + ++++ + +E ++GLP Sbjct: 20 VLAFDFGERRIGIAVGE--HLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVGLP 77 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+++GSE + F + R +P DER ++ A Q+L + + + + + + Sbjct: 78 LSLDGSEHGVTQLCKKFARRLNGR-FNLPVALIDERYSSAEASQLLNEAGIRGRAQKEML 136 Query: 137 DSIAAALILQEVLDRIS 153 D +AA ILQ D+ S Sbjct: 137 DQVAAQTILQSYFDQAS 153 >gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica] Length = 170 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61 L +DL+K+ + + +D+G K +G+A+SD + A P L+RKK + A + S Sbjct: 9 LFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAADFQS 68 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID-RKVY-VPFVFWDERLTTVSAQ 119 I+ ++ FI+G P + P + F+ ++ RK+ + + +WDE T+ + + Sbjct: 69 LISELSLVGFIVGYPFDRQKGT-PDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSKNVE 127 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +L +N+ + +D AA ILQ LD ++ Sbjct: 128 LLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVN 161 >gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str. F0310] Length = 162 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GT R+G++ DP P L+R + L + + I+GLP ++ Sbjct: 10 GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEVIVGLPRHLR 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G EG R + + K +P V DERL++ A L V + +D Sbjct: 70 GGEGVSAKGARKYARRL---KTLIPSVRVALVDERLSSNQAHARLRASGVPEHEHRSVID 126 Query: 138 SIAAALILQEVLD 150 +AA +IL++ L+ Sbjct: 127 QVAAQIILEQALE 139 >gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833] gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833] Length = 163 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 4/131 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79 +D+G+ RIG+A SDP A P + R + L+ ++ I E+ A ++GLP ++ Sbjct: 8 GVDVGSVRIGVARSDPSGVLAVPVETVRRGR---DDLDRIAEIAAEHEAIEVVVGLPTSL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G E + R + + R +P DERLTTV+AQ+ L + +++ +D Sbjct: 65 SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124 Query: 140 AAALILQEVLD 150 AA +LQ LD Sbjct: 125 AAVELLQAALD 135 >gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484] gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484] Length = 186 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENIAAFII 73 ++D+G+ R+GLA SDP A P L R ++V ++ A + Sbjct: 13 AVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGAAVVYV 72 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +++G+EG + RA+ + VP DER++TV+A Q L S ++ Sbjct: 73 GLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRSGRRHR 132 Query: 134 QKVDSIAAALILQEVLD 150 Q VD AA +ILQ LD Sbjct: 133 QVVDQAAAVVILQYALD 149 >gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens] gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 145 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK+IG+A+ A L + ++ + I A ++GLPLNM+ Sbjct: 8 GFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLNMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDSI 139 G+ F + R +PF DERLTT A+ + L+ R VD+I Sbjct: 68 GTPSDMCLRAEKFARRLNGR-YNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVDAI 126 Query: 140 AAALILQEVLD 150 AAAL+LQ LD Sbjct: 127 AAALLLQGWLD 137 >gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591] gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591] Length = 143 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + ++ + A I+GL Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVNVELHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium HTCC5015] gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium HTCC5015] Length = 141 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID G KRIG+A A P L L + A ++GLPLN + Sbjct: 6 GIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGLPLNKD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQKV 136 GS+ R F + + + P + DER ++ A+Q L S RK + + + Sbjct: 66 GSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKVKKEDI 124 Query: 137 DSIAAALILQEVLDR 151 D +AAALILQ L++ Sbjct: 125 DQLAAALILQRWLNK 139 >gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++D+GT RIG+A+S+ A P R + + +L I + + ++GL Sbjct: 21 ALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDAVEVVVGL 80 Query: 76 PLNMNGSEGPRVHSTR--AF-VHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNV 127 P ++ G+ V + AF + ++R KV P DERLTTV+A L V Sbjct: 81 PRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATTALRASGV 140 Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157 S KK + +D AA ILQ LD R S L S Sbjct: 141 SEKKGRKVIDQAAAVEILQTWLDGRASALRS 171 >gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3] gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3] Length = 142 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 10/135 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ID G R GLA+SDP R A P + RK L + IT E A ++G Sbjct: 2 GIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAA---LAARITAEEAEAVVMG 58 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL +G++ R V + R+V +P + E L++ A L D ++ +KR Sbjct: 59 LPLLDDGTDSLTTRQVRN-VTERLKRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKA 117 Query: 135 KVDSIAAALILQEVL 149 +D AA IL L Sbjct: 118 VLDQQAAVRILASFL 132 >gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102] gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102] Length = 151 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A + +HP + + + + F++G Sbjct: 5 PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 123 SVLDQVAAQAILQGFFE 139 >gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256] gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256] Length = 155 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D +HP + + + I ++G Sbjct: 5 PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ D Sbjct: 124 VLDQVAAQAILQGFFD 139 >gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC 19977] gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus] Length = 166 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79 +D+GT RIG++ SDP A P + R + ++ + E ++ GLP N+ Sbjct: 24 GVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVVVGLPRNL 83 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G F + +R VP DER TT +AQ+ L + V +++ +D Sbjct: 84 REGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQRGIIDQA 143 Query: 140 AAALILQEVLD 150 AA ILQ+ L+ Sbjct: 144 AAVAILQDWLE 154 >gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++D+GT RIG+A+S+ A P R + + +L I + + ++GL Sbjct: 21 ALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDAVEVVVGL 80 Query: 76 PLNMNGSEGPRVHSTR--AF-VHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNV 127 P ++ G+ V + AF + ++R KV P DERLTTV+A L V Sbjct: 81 PRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATTALRASGV 140 Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157 S KK + +D AA ILQ LD R S L S Sbjct: 141 SEKKGRKVIDQAAAVEILQTWLDGRASALRS 171 >gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168] gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168] Length = 122 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 I+GLPLNM+G+E P R F N I + V DERL+TV A+ L + R Sbjct: 42 IVGLPLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRAL 100 Query: 132 RIQKVDSIAAALILQEVLDR 151 K+DS +A +IL+ ++ Sbjct: 101 NKGKIDSASAVIILESYFEQ 120 >gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans ATCC 33394] gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans ATCC 33394] Length = 159 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 15 PNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 P Q + D G RIG+A + AHP + + ++ I ++ Sbjct: 5 PKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPEYLVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132 GLP +++G+E R F + R + V+W DERL++V A+++L + V KK+ Sbjct: 65 GLPTHIDGTEHEMTRLARQFGRRLHGR--FGKPVYWVDERLSSVYAEELLREAAVFGKKQ 122 Query: 133 IQKVDSIAAALILQEVLD 150 +D +AA IL D Sbjct: 123 KPVLDQVAAQAILHYFFD 140 >gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM 18603] gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM 18603] Length = 151 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 17/143 (11%) Query: 19 IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 I + D GTKRIG+A++DP G HP+ + L + + FI Sbjct: 17 IMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEY---------LKKYFVLNPVERFI 67 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P M+ + + FV + +P DER T+ A ++ + + R Sbjct: 68 VGEPKQMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDR 127 Query: 133 IQK--VDSIAAALILQEVLDRIS 153 K VD+I+A +ILQ ++R + Sbjct: 128 QNKALVDTISATIILQSWMERFN 150 >gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas haloplanktis ANT/505] gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas haloplanktis ANT/505] Length = 149 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 19/157 (12%) Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 KSLKP + + D GTK IG+AI G+ L K Q + I + + Sbjct: 4 KSLKPQGERTVMGFDFGTKSIGIAI---GQELTGSASSLKAVKA-QDGIPNWDHIAVQ-V 58 Query: 69 AAF-----IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 A + ++GLPLNM+G+ + F N + +P DERLTT A+ L Sbjct: 59 AEWQPDLMVVGLPLNMDGTSQEVTFKAKKFA-NRLHNHYGIPVQTQDERLTTADAKARLF 117 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + + VD+++A +IL+ SF ESS G Sbjct: 118 ESGGYKNLGKGNVDNMSAVIILE------SFFESSYG 148 >gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus] Length = 296 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +P++ +D GT+R+GLAI A P V + + A ++L E I ++ Sbjct: 75 RPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRDIVV 133 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 GLPL NG+E R F + D + WDER ++ A +L Sbjct: 134 GLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGM 193 Query: 130 KKRIQKVDSIAAALILQEVLD 150 +++ +DS+AA+LIL+ + Sbjct: 194 SSKVE-IDSLAASLILKHFFE 213 >gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A] gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. NATL1A] Length = 144 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + S+D+G KRIG+A DP G H P + R + E + I G PL Sbjct: 9 VLSLDIGDKRIGIAGCDPLGISITH-LPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG E + + + + + + +P F +E +T+ A++ N + ++D Sbjct: 68 DMNGMETKQSIRCKKYGIKLA-KCLKLPLAFINEHCSTLEAKEKFSLKN----DKTGRLD 122 Query: 138 SIAAALILQEVL 149 S AAA++LQ+ L Sbjct: 123 SAAAAILLQQWL 134 >gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17] gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17] Length = 140 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GT+RIG+A+ P + + T +L + ++GLPLN Sbjct: 9 VMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGLPLN 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+ SE R F + R V V V DERLT+ A+ ++ SR R +D Sbjct: 69 MDDSENEMCVRARKFGKRLHGRFHVTVEMV--DERLTSYQAKGEVMAAGGSRNYRRDGID 126 Query: 138 SIAAALILQ 146 AA LIL+ Sbjct: 127 DRAAVLILE 135 >gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase Length = 181 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+GT RIG+A SD R A P + R+ + L+ IT + ++GL Sbjct: 20 GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++ G+ V R + R +P DERLTTV A Q L ++ + Sbjct: 80 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 139 Query: 132 RIQKVDSIAAALILQEVLD 150 + +D AA ILQ LD Sbjct: 140 GRKVIDQAAAVEILQTWLD 158 >gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001] gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001] Length = 146 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + EL I A ++GLP++ + Sbjct: 13 AFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVGLPMHPD 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ + F N ++ + +P + DER ++V A+ L + K R +D+ A Sbjct: 73 GTPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEATL----RANKGRADMLDAEA 127 Query: 141 AALILQEVLDRIS 153 A++ILQ+ LD +S Sbjct: 128 ASVILQQYLDGLS 140 >gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina NK-01] gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina NK-01] Length = 144 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 5/139 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP + + D GTK+IG+A+ A L + + + I A ++ Sbjct: 4 KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63 Query: 74 GLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 GLPLNM+G+ P S RA F + R +P DERLTT A+ + S Sbjct: 64 GLPLNMDGT--PSEMSARAEKFARRLNGR-FNLPAYTHDERLTTFEAKGQRLREGQSGGY 120 Query: 132 RIQKVDSIAAALILQEVLD 150 R + VD+IAAAL+LQ L+ Sbjct: 121 RERPVDAIAAALLLQGWLE 139 >gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii] gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii] Length = 186 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 12/138 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G +R G+A++ G PRP V K K +LLS E FI+GLP + Sbjct: 28 GIDYGLERTGIAVTFCG---LAPRPLSVSKLKGDNLIKKLLSVAKKEKADEFIVGLPRSW 84 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + E + + TR F + V DE +T+ A + +I ++K R +VD Sbjct: 85 DAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDALEFMIYRGSTKKSRRLEVD 144 Query: 138 SIAAALI------LQEVL 149 + AA L+ LQE L Sbjct: 145 AYAAVLMVPKRGELQETL 162 >gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM 1131] gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM 1131] Length = 139 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P L ++ + I+GLPLNM+ Sbjct: 8 AFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGLPLNMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E R F N I + V DERL+TV A+ L + R KVDS + Sbjct: 68 GTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKGKVDSAS 126 Query: 141 AALILQEVLDR 151 A +IL+ ++ Sbjct: 127 AVVILESWFEQ 137 >gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis SB2B] gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B] Length = 139 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+A+ A+P + ++ I +IGLPLN Sbjct: 4 VMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F N ++ + V DERLTT A+ L ++ + +VD+ Sbjct: 64 MDGTEQEMTQRARKFA-NRLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQVDA 122 Query: 139 IAAALILQEVLDRISFLESSKG 160 ++A LI++ S+ E+ G Sbjct: 123 VSAVLIVE------SYFENQYG 138 >gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314] gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314] Length = 188 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+GT RIG+A SD R A P + R+ + L+ IT + ++GL Sbjct: 27 GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 86 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++ G+ V R + R +P DERLTTV A Q L ++ + Sbjct: 87 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 146 Query: 132 RIQKVDSIAAALILQEVLD 150 + +D AA ILQ LD Sbjct: 147 GRKVIDQAAAVEILQTWLD 165 >gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens YS-314] gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 204 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75 +D+GT RIG+A SD R A P + R+ + L+ IT + ++GL Sbjct: 43 GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 102 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131 P ++ G+ V R + R +P DERLTTV A Q L ++ + Sbjct: 103 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 162 Query: 132 RIQKVDSIAAALILQEVLD 150 + +D AA ILQ LD Sbjct: 163 GRKVIDQAAAVEILQTWLD 181 >gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 170 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G +RIG+A SD A + R+ +++ ++ +I ++G+PL + Sbjct: 18 GLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLAD 77 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + FV + V +P V +E L+T A+ L + + K + +D + Sbjct: 78 GSVGSQARKVQRFVR-ALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQS 136 Query: 141 AALILQEVLD 150 AA+ILQ LD Sbjct: 137 AAVILQTWLD 146 >gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL082PA2] gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL060PA1] gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL050PA2] gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes HL103PA1] Length = 160 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +ID G RIG+A SD A P + + V + A + + E I+GLP+ Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 73 LNGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132 Query: 139 IAAALILQEVLD--RISFLESSKG 160 AA IL+ VL+ R+ LE++ G Sbjct: 133 AAAVAILEHVLEQVRLGQLETATG 156 >gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA3] gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA4] Length = 160 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +ID G RIG+A SD A P + + V + A + + E I+GLP+ Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 73 LNGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132 Query: 139 IAAALILQEVLD--RISFLESSKG 160 AA IL+ VL+ R+ LE++ G Sbjct: 133 AAAVAILEHVLEQVRLGQLETATG 156 >gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium accolens ATCC 49725] gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium accolens ATCC 49725] Length = 173 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75 ++D+GT RIG+A S+ A P + RK + + +L I I+GL Sbjct: 11 ALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTAVEVIVGL 70 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQILIDMNV 127 P +++G+ V + + R KV P DERLTTV+A L V Sbjct: 71 PRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATTALRASGV 130 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 S KK + +D AA ILQ LD Sbjct: 131 SEKKGRKIIDQAAAVEILQSWLD 153 >gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 146 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 6/134 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ AH L + ++ + I A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 G+ P S RA F + R + DERLTT A+ + + R VD Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDR 151 +IAAAL+LQ LD Sbjct: 126 AIAAALLLQGWLDE 139 >gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801] gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802] gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801] gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A D A + R +L ++ ++GLP +M+ Sbjct: 8 GLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVVGLPYSMD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS G + + F I + +P + DERLT+V A+ L +D A Sbjct: 68 GSLGFQAKQVQKFTRR-ISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDKGAIDRQA 126 Query: 141 AALILQEVLD 150 A +ILQ+ LD Sbjct: 127 ATIILQQWLD 136 >gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113] gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113] Length = 152 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 15 PNQP-IA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 P++P IA D G + IG+A+ A+P L + ++ I N I Sbjct: 10 PSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKK 131 +GLPLNM+ SE + R F + R Y + W DERL+TV A++ L ++ S Sbjct: 70 VGLPLNMDQSEQFLTKAARRFGRRLHGR--YGLTIEWIDERLSTVEARERL-NIKSSASG 126 Query: 132 RIQKVDSIAAALILQEVL 149 R Q +D +AA ILQ L Sbjct: 127 RRQGIDQMAAQCILQTWL 144 >gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM 15894] gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM 15894] Length = 184 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTA-LELLSFITTENIAAFI-IGL 75 +D+G RIGLA SDP A P + R T +A + ++ E AA + +GL Sbjct: 33 GVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAAVVYVGL 92 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +++G EG RAF + VP DER++TV+A L K Sbjct: 93 PRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKSKSHRPV 152 Query: 136 VDSIAAALILQEVLD 150 +D AA +ILQ LD Sbjct: 153 IDQAAAVIILQSALD 167 >gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139] gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139] Length = 147 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +ID G RIG+A SD A P + + V + A + + E I+GLP+ Sbjct: 4 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 60 LNGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 119 Query: 139 IAAALILQEVLD--RISFLESSKG 160 AA IL+ VL+ R+ LE++ G Sbjct: 120 AAAVAILEHVLEQVRLGQLETATG 143 >gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium accolens ATCC 49726] gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium accolens ATCC 49726] Length = 183 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 13/143 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75 ++D+GT RIG+A S+ A P + RK + + +L I + I+GL Sbjct: 21 ALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSAVEVIVGL 80 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQILIDMNV 127 P +++G+ V + + R KV P DERLTTV+A L V Sbjct: 81 PRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATTALRASGV 140 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 S KK + +D AA ILQ LD Sbjct: 141 SEKKGRKIIDQAAAVEILQSWLD 163 >gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996] gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996] Length = 158 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D +HP + + + I ++G Sbjct: 5 PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ D Sbjct: 124 VLDQVAAQAILQGFFD 139 >gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans 568] gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568] Length = 140 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG AI A + + ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N + + V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQLVTEQARKFA-NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ +R Sbjct: 122 VDSASAVVILESWFER 137 >gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis HLHK9] gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis HLHK9] Length = 155 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G RIG+A+ D AHP L + + I I+ ++GLP + + Sbjct: 9 GFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLPTHAD 68 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ R F + R +P V DER +++ A+ +L + +K+ +D +A Sbjct: 69 GTPHEMTRLARRFAQRLHGR-FGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVLDQVA 127 Query: 141 AALILQEVLDR 151 A +ILQ D+ Sbjct: 128 AQVILQSFFDQ 138 >gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM 10331] gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM 10331] Length = 138 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLGTKRIG+A+++ A P + + + L L ++ LP+ ++ Sbjct: 11 GVDLGTKRIGVAVAEG--SLALPLEVIDARGPWRARLAELVASVGASVVVVG--LPIGLD 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GSEG R + + + + VP VF DERL++ +A++ L V + R VD+ A Sbjct: 67 GSEGRAAARVRQWSEGLAE-HLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGAVDAFA 125 Query: 141 AALILQEVL 149 A IL+ L Sbjct: 126 ATEILERWL 134 >gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL037PA2] gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL044PA1] gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL037PA3] Length = 160 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTE-NIAAFIIGLP 76 +ID G RIG+A SD A P + QTA ++ L+ I E I+GLP Sbjct: 17 AIDWGKARIGVAASDRDAILAFP------VETVQTANRPMQRLAEIVAEYEPVEVIMGLP 70 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +NG+E R + + +P + DER+TT +A + L D + +++ + Sbjct: 71 VALNGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVI 130 Query: 137 DSIAAALILQEVLDRI 152 D AA IL++VL+++ Sbjct: 131 DQAAAVAILEDVLEQV 146 >gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC 6940] gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC 6940] Length = 180 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75 ++D+GT RIG+A+SD A P + R K + ++ +L I ++ ++GL Sbjct: 20 ALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHVVEVVVGL 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNM-----IDRKVYVPFV-FWDERLTTVSAQQILIDMNVSR 129 P ++ G+ V + + D + P V DERLTTV+A L VS Sbjct: 80 PRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTALRASGVSE 139 Query: 130 KKRIQKVDSIAAALILQEVLD-RISFLES 157 KK + +D AA ILQ LD R + L+S Sbjct: 140 KKGRKVIDQAAAVEILQSWLDARHNALQS 168 >gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198] gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ + D GTK IG+AI +++T TA L SF + I + Sbjct: 3 NKTVMGFDFGTKSIGVAIG---------------QEITGTARPLASFKAKDGIPDWAQIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E + F N + + V DERL+TV A+ Sbjct: 48 KIIKEWQPDLVVVGLPLNMDGTEQLVTAQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L + R VD+ +A +IL+ ++ Sbjct: 107 HLFERGGYRSLDKGSVDAASAVIILESWFEQ 137 >gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114] Length = 151 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+ D HP + + + + F++G Sbjct: 5 PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133 LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122 Query: 134 QKVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 123 SVLDQVAAQAILQGFFE 139 >gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae] gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae] Length = 146 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 21 SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 + DLGTK G AISD F+ V KV + + +I AF Sbjct: 5 AFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQY-----QNSIDAF 59 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G PL NG++ R F + + DE +T+ AQ+IL D+ S KK Sbjct: 60 VLGYPLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKK 119 Query: 132 RIQKVDSIAAALILQEVL 149 K D+++A +IL + L Sbjct: 120 TKSKKDTLSAVIILNDFL 137 >gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565] gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565] Length = 140 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P L E+ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G++ R F N + + P F DERLTT A+ L + R Sbjct: 63 PLNMDGTDQEITVRARKF-GNRLHGRFGKPVEFKDERLTTTDARARLFERGGYRALEKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD ++A LI++ ++ Sbjct: 122 VDGVSAQLIVEAWME 136 >gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str. F0314] gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str. F0314] Length = 153 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73 P + D G RIG+A D +HP V + E ++ + E F++ Sbjct: 5 PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLT-TVTGGSNEVKFEAVAKLVDEWQPVQFVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132 GLP++ +G+E +R F + R +P V+W DER++++ A+ +L + V +K+ Sbjct: 64 GLPVHADGTEHELTRLSRKFGRRLQGR-FKLP-VYWVDERMSSLYAESLLAEAQVFGRKQ 121 Query: 133 IQKVDSIAAALILQ 146 +D +AA ILQ Sbjct: 122 KAVLDQVAAQAILQ 135 >gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa NIES-843] gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa NIES-843] Length = 145 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KR+G+A D A ++R + + + NI + GLP M Sbjct: 8 GLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTMA 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + + + + + +P + DER T++ A++ L +D A Sbjct: 68 GELGFQAQQVQKYAQKLAI-ALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDREA 126 Query: 141 AALILQEVLDR 151 AA+ILQ+ LDR Sbjct: 127 AAIILQQWLDR 137 >gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 162 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KR+G+A D A ++R + + + NI + GLP M Sbjct: 8 GLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTMA 67 Query: 81 GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G G + + + + +D +P + DER T++ A++ L +D Sbjct: 68 GELGFQAKQVQKYAQKLAITLD----LPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAID 123 Query: 138 SIAAALILQEVLDR 151 AAA+ILQ+ LDR Sbjct: 124 REAAAIILQQWLDR 137 >gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis ATCC 700755] gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis ATCC 700755] Length = 137 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 9/138 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D G KR G+AISD + A + + + Q EL I E++ ++G P + Sbjct: 5 VIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQPKH 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTVSAQQILIDMNVSRKKRIQK- 135 ++G + F+ ++ + ++ V DER T+ A Q +ID + +K+R K Sbjct: 62 IDGKPMQLEKNILYFIEDV--QALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKG 119 Query: 136 -VDSIAAALILQEVLDRI 152 VD I+A +ILQ L I Sbjct: 120 LVDEISATIILQNYLQYI 137 >gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida subsp. multocida str. Pm70] gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 140 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 31/147 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 + + D GTK IG A+ + +T TA L +F + I + Sbjct: 5 VLAFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIGKCL 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLPLNM+G+E R F H + R V DERLTT A+ + Sbjct: 50 AEWQPDRVVVGLPLNMDGTEQDLTVRARKFAHRLHGR-FGVAVELQDERLTTTEARAEIF 108 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 + KVD I+A LIL+ + Sbjct: 109 GRGGYKALNKSKVDGISACLILESWFE 135 >gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2] gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2] Length = 134 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G KRIG+AI R A P + K + +A ++GLP+ Sbjct: 9 VIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVVGLPMR 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG E R F + R P + +E+L+++ A+Q + K Q +D Sbjct: 69 LNGEEQALTQPARKFGQRLSGR-YQRPVYYIEEQLSSIEAEQ-------RKTKTDQPMDD 120 Query: 139 IAAALILQEVLD 150 AA +IL+ LD Sbjct: 121 HAAQIILENWLD 132 >gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299] gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299] Length = 126 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 10/131 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +ASID+G KRIG+A+S + P+ ++RK Q + ++ +F+ I I+G P Sbjct: 3 LASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFP-- 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 S + FV+ + K VF +E ++++ A++++ + KR +VDS Sbjct: 60 --SSSDDMQKRVKHFVNLL---KFEGEIVFQEENMSSIEAEELM--KGDIKYKRDGRVDS 112 Query: 139 IAAALILQEVL 149 +AA +IL+ L Sbjct: 113 LAAKIILERYL 123 >gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 140 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 31/151 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 N+ I + D GTK IG AI +++T +A L +F + + Sbjct: 3 NRTIIAFDFGTKSIGAAIG---------------QELTGSARALAAFKAQDGSPDWQKIE 47 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLPLNM+G+E R F N + + V DERL+TV A+ Sbjct: 48 KLLKEWQPDLVVVGLPLNMDGTEQLVTDQARKFA-NRLHGRFGVQIALHDERLSTVEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L D R VDS +A +IL+ +R Sbjct: 107 NLFDRGGFRALDKGSVDSASAVVILESWFER 137 >gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1] gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae SmR1] Length = 128 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G KRIG+A+ + G + A P + + I A ++GLPL+ Sbjct: 4 ILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPLH 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+E R F N + + V V DER ++ V + +R +++D Sbjct: 64 PDGAEHEMSVRCRRFA-NQLHGRYGVEVVLVDERYSSA----------VIQHQRGEQIDD 112 Query: 139 IAAALILQEVLD 150 AAA+ILQ+ D Sbjct: 113 QAAAIILQQYFD 124 >gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina ymp] gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp] Length = 144 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 S KP + + D GTK+IG+A+ A L + + + I A Sbjct: 2 SDKPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAV 61 Query: 72 IIGLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++GLPLNM+G+ P S RA F + + +P DERLTT A+ + S Sbjct: 62 VVGLPLNMDGT--PSEMSARAEKFARRL-NGHFNLPAYTHDERLTTFEAKGQRLREGQSG 118 Query: 130 KKRIQKVDSIAAALILQEVLD 150 R + VD+IAAAL+LQ L+ Sbjct: 119 GYRERPVDAIAAALLLQGWLE 139 >gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum STM815] gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815] Length = 151 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A P L + + I A ++GLP++ + Sbjct: 13 AFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVGLPMHPD 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ R + F N ++ + +P + DER ++V A+ + S ++ +D+ A Sbjct: 73 GTPHERTQLAKRF-GNQLNGRFNLPVTWIDERYSSVEAEAGI----RSGTRQAGMLDAEA 127 Query: 141 AALILQEVLDRISF 154 A +ILQ+ LD +S Sbjct: 128 ACIILQQYLDGLSL 141 >gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978] Length = 128 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 29 IGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88 +G+AI A+P P V K +LL + FI+GLPLNM+ SE Sbjct: 1 MGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELST 60 Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQ 146 R F + + ++ DERLTT A++ L + + DS AAAL++Q Sbjct: 61 RARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQ 117 >gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis SK2] gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax borkumensis SK2] Length = 133 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT++IG+A + A P L K ++ + + A ++GLPLN Sbjct: 2 ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61 Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 M+GS+ R F +H +KV++ DERL+T A++ KK + Sbjct: 62 MDGSDSESTVRARKFANRLHGRFGKKVWLI----DERLSTREARE-----RTGIKKADSR 112 Query: 136 VDSIAAALILQ 146 VDS+AA +I + Sbjct: 113 VDSMAAVIIAE 123 >gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 167 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 10/139 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTE-NIAAFIIGL 75 ID+G R+G+A+SDP A P + R K ++ L + TE + ++G+ Sbjct: 21 GIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEVVEIVVGM 80 Query: 76 PLNMNGSEG--PRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 PL ++GS G R + F + + +V V + DER+TTV AQ L + K Sbjct: 81 PLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYA--DERMTTVMAQSRLHAAGIDVKSG 138 Query: 133 IQKVDSIAAALILQEVLDR 151 + +D AA ILQ LDR Sbjct: 139 RKIIDQAAAVEILQSWLDR 157 >gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b] gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b] Length = 138 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+A+ A L + T ++ + ++GL Sbjct: 3 SETLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE R F N + + V DERL+TV A+ L + R + Sbjct: 63 PLNMDGSEQELTARARKFA-NRLHGRFGVRVELQDERLSTVEARAGLFERGGYRALQKGA 121 Query: 136 VDSIAAALILQEVLD 150 VDS +A +IL++ D Sbjct: 122 VDSQSAVIILEDWFD 136 >gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium glucuronolyticum ATCC 51866] gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium glucuronolyticum ATCC 51866] Length = 189 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVT------QTALELLSFITTENIAAFI 72 ++D+GT RIG+A SD R A P + R K+V + ++ + I Sbjct: 23 ALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVREYEPVEVI 82 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 IGLP ++ G+ V R + +P F DERLTTV A Q L ++ Sbjct: 83 IGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQALHASGLT 142 Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESSK 159 + + VD AA ILQ LD R S+L +S+ Sbjct: 143 ERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174 >gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 117 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L S++ E + +IG P+ ++G+ FV +P V++DER T+V A Sbjct: 20 LSSYVKQEEVERIVIGKPMQLDGNPSENFARVENFVGRWRKSHPAIPIVYYDERFTSVLA 79 Query: 119 QQILIDMNVSRKKRIQK---VDSIAAALILQEVLD 150 + +++ V +K R + D I+A +ILQ+ ++ Sbjct: 80 HRAILESGVKKKTRRENKGLADEISATIILQDYMN 114 >gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp. GTL1] gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp. GTL1] Length = 138 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 8/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77 + ++D+GTKRIG+A +D RF P L +V +E L I E + I+G P Sbjct: 8 VIALDVGTKRIGIAHADTAVRFPVPYGTL---EVDGLEIERLREIIAELEPSLIIVGYPR 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N G + + F + + +F DE LT+V A++ L N K +D Sbjct: 65 NQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQNKPYTKS--DID 120 Query: 138 SIAAALILQEVLDR 151 + AAA+IL + L+ Sbjct: 121 AHAAAIILGDYLEE 134 >gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL001PA1] Length = 160 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +ID G RIG+A SD A P + + V + A + + E I+GLP+ Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG+E + R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 73 LNGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132 Query: 139 IAAALILQEVLDRISFLESS 158 AA IL+ VL+++ +S Sbjct: 133 AAAVAILEHVLEQVRLGQSE 152 >gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803] gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803] Length = 135 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D GTKR G+A++D + A L + + L + E + ++G P Sbjct: 4 ILALDYGTKRTGVAVTDELKMIASG---LTTVQTPELIKFLEDYFKNEKVERVLVGEPKR 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 M+ + + F+ + + +P DER T+ A Q +ID + +KKR K V Sbjct: 61 MDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDKALV 120 Query: 137 DSIAAALILQ 146 D I+A +ILQ Sbjct: 121 DEISATIILQ 130 >gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20] Length = 155 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D+G RIG+A D + P L R + E + + I+GLP +M Sbjct: 4 AFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMG 63 Query: 81 GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G RA+ ++ + R+V V V DERLTTVSA + L + + VD Sbjct: 64 GGSSSSTKDARAWARDLASRLPRRVCVRLV--DERLTTVSAHRDLHAAGLKERSFRGIVD 121 Query: 138 SIAAALILQEVL 149 AA +IL++ + Sbjct: 122 QAAAVVILEQAI 133 >gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum] Length = 171 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTE-NIA 69 P+ ID G R+GLA+SD RF+ P FL ++ + L I TE I Sbjct: 17 PLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKKIQ 76 Query: 70 AFIIGLPL-NMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTT--VSAQQILID 124 + G+P +++G P+ + FV +I P WDE LT+ + ++++ Sbjct: 77 GIVFGVPWYHLSGDPNPK---SEVFVEYARLIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133 Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152 SR K+ +D +A LILQ LD Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163 >gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688] gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688] Length = 172 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + AHP + + + + I I+GLPL+++ Sbjct: 29 AFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLIVGLPLSLD 88 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E R F + D + +P V DERL++ A L + V +K+ +D +A Sbjct: 89 GEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQKVMLDQVA 147 Query: 141 AALILQEVLDRISFLESSK 159 A ILQ D +S L ++ Sbjct: 148 AQHILQSYFDTLSSLSVAQ 166 >gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180] gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180] Length = 135 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G ++IG+A+ R A P L + + + I +A ++GLP M+ Sbjct: 5 GFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPFQMD 64 Query: 81 GSE---GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +E PRVH ++ + +P DERLT+ A + L + + R ++ VD Sbjct: 65 DTEVAWSPRVHR----FARQLEGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAVD 119 Query: 138 SIAAALILQEVL 149 ++AAALIL+ L Sbjct: 120 ALAAALILETWL 131 >gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999] Length = 137 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+A+ A P + + A ++GLPLNM+ Sbjct: 6 AFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGLPLNMD 65 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E R F + R F DERLTT A+ L ++ +K KVDS++ Sbjct: 66 GTEQEMTLRARKFGRRISARCKSQVFEV-DERLTTTDAKARLFELGGYKKLSKDKVDSVS 124 Query: 141 AALILQ 146 A +I + Sbjct: 125 ACVIFE 130 >gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus HTCC2559] gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus HTCC2559] Length = 135 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 9/137 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G KR G+A++D + A VR ++ L+ + E + +IG P Sbjct: 4 ILAIDYGAKRTGIAVTDELKLIASGLT-TVRTHDLESFLK--DYFEKEKVELVLIGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135 ++G+ F++ +KV+ + F DER T+ A Q +ID + +K+R K Sbjct: 61 VDGTHSENEERIIHFINRF--KKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNKA 118 Query: 136 -VDSIAAALILQEVLDR 151 VD I+A +ILQ L R Sbjct: 119 LVDEISATIILQTYLYR 135 >gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum ATCC 700975] gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium aurimucosum ATCC 700975] gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum ATCC 700975] Length = 182 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 61/146 (41%), Gaps = 12/146 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75 +D+GT RIG+A+SD R A P + R+ + LL I + +GL Sbjct: 20 GLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDAVEVAVGL 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR-------KVYVPFVFWDERLTTVSAQQILIDMNVS 128 P ++ G+ V + + R K P DERLTTV A L VS Sbjct: 80 PRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSALRASGVS 139 Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154 K+ +D AA ILQ LD F Sbjct: 140 EKRGRSVIDQAAAVEILQSWLDARHF 165 >gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii 23-P] gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii 23-P] Length = 151 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 13/137 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74 I +ID G KR G+A++D + A T ELL F+ + E + +IG Sbjct: 18 ILAIDFGKKRTGIAVTDELQIIASGL-------TTVNTDELLPFLKEYSSKEKVGLILIG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P M+ S+ F+ + +P DER T+ A Q +ID + +K+R Sbjct: 71 HPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQTMIDGGMKKKQRRN 130 Query: 135 K--VDSIAAALILQEVL 149 K VD I+A +ILQ L Sbjct: 131 KAMVDEISATIILQSYL 147 >gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii HA] gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 142 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTENIAAFIIGLPLNM 79 D+GTKR G+AI++ A + K T +EL I + NI FI+GLP + Sbjct: 8 GFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLPFDK 67 Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E ++F + +R ++ V F+ DE L++ A+++L + + VD Sbjct: 68 QGKEQIMTFIAKSFGKKLKNRYQIEVEFI--DEYLSSNEAKKLLKYNHHHHNAQRGNVDK 125 Query: 139 IAAALILQEVLDRISF 154 ++ LILQ L+ F Sbjct: 126 QSSQLILQTWLNEKKF 141 >gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805] gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805] Length = 151 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G +RIGLA D P P L R Q L + N+ ++GLPLN Sbjct: 3 SLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLNDQ 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 G + H R + I R + +P F +E ++ +A + Sbjct: 63 GQPTDQAHHCRRYG-RRIARDLGLPLAFVNEHSSSWAAAE 101 >gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae 3655] gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae 6P18H1] gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae 3655] gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae 6P18H1] Length = 139 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG AI + +T TA L +F + I + Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQTLPAFKAQDGIPNWEAIEKCLKE 51 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPLNM+G+E R F N + + V DERLTT A+ + + Sbjct: 52 WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNIHLQDERLTTTQARSEIFER 110 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154 + + K+D ++A LIL+ + + Sbjct: 111 GGFKALKKGKIDGVSACLILESWFEYAEY 139 >gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor] gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor] Length = 214 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLA+ GR PRP V K + + L LL + IIGLP++ Sbjct: 76 GVDLGDARTGLAV---GRGITLPRPLTVLKLRGQKLELTLLDVARQQEADELIIGLPVSA 132 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ V + + + DE T+ A + +I V + R + D Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192 Query: 138 SIAA 141 + AA Sbjct: 193 AYAA 196 >gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd KW20] gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae 86-028NP] gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae 22.1-21] gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittAA] gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittHH] gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittII] gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae R3021] gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittGG] gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047] gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031] gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius ATCC 11116] gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae 86-028NP] gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae 22.1-21] gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittAA] gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittHH] gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittII] gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae 22.4-21] gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittGG] gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae 10810] gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866] gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846] gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031] gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047] gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius ATCC 11116] Length = 139 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG AI + +T TA L +F + I + Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPLNM+G+E R F N + + V DERLTT A+ + + Sbjct: 52 WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNVHLQDERLTTTQARSEIFER 110 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154 + + K+D ++A LIL+ + + Sbjct: 111 GGFKALKKGKIDGVSACLILESWFEYAEY 139 >gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 146 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + IT A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138 G+ P S RA ++ + V DERLTT A+ + + R VD+ Sbjct: 69 GT--PSEMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126 Query: 139 IAAALILQEVLD 150 IAAAL+LQ LD Sbjct: 127 IAAALLLQGWLD 138 >gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittEE] gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae 7P49H1] gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127] gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittEE] gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae 7P49H1] gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127] Length = 139 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 31/149 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG AI + +T TA L +F + I + Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPLNM+G+E R F N + + V DERLTT A+ + + Sbjct: 52 WKPDVVIVGLPLNMDGTEQNLTLLARKFA-NRLQGRFGVNVHLQDERLTTTQARSEIFER 110 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154 + + KVD I+A LIL+ + + Sbjct: 111 GGFKALKKGKVDGISACLILESWFECTEY 139 >gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202] gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium acnes KPA171202] Length = 160 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G RIG+A SD A P + + L + I+GLP+ +N Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 74 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E R + + +P + DER+TT +A + L + + +K+ +D A Sbjct: 75 GTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 134 Query: 141 AALILQEVLDRISFLESS 158 A IL+ VL+++ +S Sbjct: 135 AVAILEHVLEQVRLGQSE 152 >gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas tunicata D2] gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas tunicata D2] Length = 149 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GT+ IG+A+ A P + + E+ + + ++GLPLN Sbjct: 14 VLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+ + F N + +P DERLTT A+ L +K VDS Sbjct: 74 MDGTNQEVTFQAKKFA-NRLHNNYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGNVDS 132 Query: 139 IAAALILQEVLDRISFLESSKG 160 ++A LIL+ S+ E+ G Sbjct: 133 MSALLILE------SYFENQYG 148 >gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4] gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4] Length = 136 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G R GLA++D + A + + L + T E++ F++G P Sbjct: 4 ILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDF---LKDYTTKESVELFLVGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN F+ + ++P DER T+ A Q +ID + +K+R K V Sbjct: 61 MNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNKALV 120 Query: 137 DSIAAALILQEVL 149 D I+A +ILQ L Sbjct: 121 DEISATIILQSYL 133 >gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis ATCC BAA-381] gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 127 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 9/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 A +D+G KRIG+A++ + P+ ++RK Q A E+ + + ++G+PL Sbjct: 5 AGLDVGLKRIGVALAFD--KIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPL-- 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 GS + ++++ K + +F DE ++V A ++ S KK+ K+DS+ Sbjct: 61 GGSSEDEMKRRITHFCSLLNFKGEI--IFMDESYSSVEADEM---RQFSGKKKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA +IL+ L Sbjct: 116 AAMVILKRYL 125 >gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4] gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4] Length = 172 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + AHP + + + + I I+GLPL+++ Sbjct: 29 AFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLIVGLPLSLD 88 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E R F + D + +P V DERL++ A L + V +K+ +D +A Sbjct: 89 GEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQKVMLDQVA 147 Query: 141 AALILQEVLDRISFL 155 A ILQ D +S L Sbjct: 148 AQHILQSYFDTLSSL 162 >gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187] gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165] gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137] gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187] gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165] gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137] gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266] Length = 160 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G RIG+A SD A P + + L + I+GLP+ +N Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 74 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E R + + +P + DER+TT +A + L + + +K+ +D A Sbjct: 75 GTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 134 Query: 141 AALILQEVLDRISFLESS 158 A IL+ VL+++ +S Sbjct: 135 AVAILEHVLEQVRLGQSE 152 >gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273] gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273] Length = 141 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 11/150 (7%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +KP I ID GTKRIGLA++DP + FA P + EL + + + + Sbjct: 1 MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTFEPGGLHH---ELRRIMQGDTVDLAV 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P+ +GS FV + + DE ++ A +IL SRK R Sbjct: 58 VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117 Query: 133 IQK--VDSIAAALILQEVLDRISFLESSKG 160 +K +DS AA ++L FLE ++G Sbjct: 118 REKGRLDSAAACVLLTR------FLEENRG 141 >gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 146 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + IT A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138 G+ P S RA ++ + V DERLTT A+ + + R VD+ Sbjct: 69 GT--PSDMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126 Query: 139 IAAALILQEVLD 150 IAAAL+LQ LD Sbjct: 127 IAAALLLQGWLD 138 >gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC3088] gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC3088] Length = 139 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G ++IG+A+ + + A P L + +L + + A ++G P N Sbjct: 4 VLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGEPSN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G++ R F N I + V DERL++ A+Q +M + +D+ Sbjct: 64 MDGTDSDMAARARKFA-NRIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTPIDA 122 Query: 139 IAAALILQEVLDRISFLESSK 159 +AA +ILQ S+ E+++ Sbjct: 123 LAAMIILQ------SYFETAQ 137 >gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL013PA1] gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL074PA1] gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA1] gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA2] gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL087PA2] gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL083PA1] gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL025PA1] gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL059PA1] gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL046PA2] gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL036PA1] gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL036PA2] gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL063PA1] gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL063PA2] gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL007PA1] gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL056PA1] gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL086PA1] gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA4] gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL050PA1] gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL050PA3] gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL036PA3] gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL067PA1] gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL027PA1] gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL002PA1] gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL002PA2] gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL082PA1] gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL037PA1] gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL053PA1] gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL045PA1] gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL072PA2] gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA1] gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA2] gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA3] gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL053PA2] gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL078PA1] gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL027PA2] gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL002PA3] gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL072PA1] gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL038PA1] gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL059PA2] gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL046PA1] gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL030PA1] gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL030PA2] gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes HL096PA2] gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes HL097PA1] gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes HL096PA3] gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL013PA2] gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL043PA2] gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL043PA1] gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL087PA3] gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL092PA1] gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL083PA2] gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL025PA2] gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL020PA1] gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL087PA1] gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes HL099PA1] Length = 147 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G RIG+A SD A P + + L + I+GLP+ +N Sbjct: 4 AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+E R + + +P + DER+TT +A + L + + +K+ +D A Sbjct: 62 GTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 121 Query: 141 AALILQEVLDRISFLESS 158 A IL+ VL+++ +S Sbjct: 122 AVAILEHVLEQVRLGQSE 139 >gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 141 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 8/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 I ID G GL+I+DP ++FA F + T+ + L+ I + I +IGLP Sbjct: 4 ILGIDYGKVITGLSITDPLQKFA----FGLNAIPTKNLMSFLAILIAKKPIKKIVIGLPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +N S + F+ + + V DER T+ A +I++ + +K+R QK Sbjct: 60 TLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRR-QKGL 118 Query: 136 VDSIAAALILQEVLDR 151 ++ I+A +ILQ L + Sbjct: 119 INKISATIILQSYLTK 134 >gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1] gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5] gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5] gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1] Length = 131 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIGLAI ++ P + R Q +LELL + T+ I+GLP Sbjct: 2 IIACDIGLKRIGLAIY--AQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 ++TR V + I+ + P ++ +E ++V A L ++ ++++ K Sbjct: 58 ------HACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111 Query: 136 VDSIAAALILQEVL 149 +DS+AA IL+ L Sbjct: 112 LDSLAACEILRRYL 125 >gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas haloplanktis TAC125] gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas haloplanktis TAC125] Length = 149 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 39/167 (23%) Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 K+ KP + + D GTK IG+AI +++T +A L + + I Sbjct: 4 KNFKPQGQRTVMGFDFGTKSIGIAIG---------------QELTGSASSLKAVKAQDGI 48 Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113 + ++GLPLNM+G+ + F N + +P DERL Sbjct: 49 PNWDDIAVQVNEWQPDLMVVGLPLNMDGTAQEVTFKAKKFA-NRLHNHYAIPVETQDERL 107 Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 TT A+ L + + KVD+++A +IL+ SF E+S G Sbjct: 108 TTADAKARLFEQGGYKNLGKGKVDNMSAVIILE------SFFETSYG 148 >gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15] Length = 131 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 1/126 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GT+RIG+A+ P + + ++ S + ++GLPLNM+ Sbjct: 2 AFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNMD 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 +E R F + R +VP DERLT+ A+ ++ SR VD A Sbjct: 62 DTENDMCARARKFGKRLHGR-YHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDRA 120 Query: 141 AALILQ 146 A LIL+ Sbjct: 121 AVLILE 126 >gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM 30120] gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM 30120] Length = 139 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 31/146 (21%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG+A+ +++T TA L S ++ + Sbjct: 8 AFDFGTKSIGVAVG---------------QEITGTARALTSLKASDGRPDWSQIEKLLKE 52 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPLNM+G+E R F N I + V DERL+TV A+ L + Sbjct: 53 WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVQVQLHDERLSTVEAKAGLFEQ 111 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151 R KVDS +A +IL+ ++ Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137 >gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis SK1302] gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis SK1302] Length = 61 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 104 VPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVDSIAAALILQEVLDR 151 +P + DERLTTV+A+++LI+ ++SR KR + +D +AA LILQ LDR Sbjct: 11 LPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59 >gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus ATCC 51449] gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 138 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N I + D+G KRIGLA + P P ++R Q A EL + + NI ++G+ Sbjct: 2 NHCILACDVGLKRIGLATLK--QEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G E + + H + F +E T+ +A Q L M + R QK Sbjct: 60 P---SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116 Query: 136 ---VDSIAAALILQEVL 149 +DS++A ILQ + Sbjct: 117 DGRIDSLSACEILQRYI 133 >gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 142 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTENIAAFIIGLPLNM 79 D+GTKR G+AI++ A + K T + I+ NI F++GLP N Sbjct: 8 GFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGLPFNQ 67 Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E ++F + + +R ++ V F+ DE L++ A+++L + + VD Sbjct: 68 QGKEQTMTFIAKSFGNKLKNRYQIEVEFI--DEYLSSNEAKKLLKYNHHHHNAQRDDVDK 125 Query: 139 IAAALILQEVLDRISF 154 ++ LILQ L+ F Sbjct: 126 QSSQLILQTWLNEKRF 141 >gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297] gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297] Length = 142 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 F++G+P NM+GSE V R F + R +P DERLTT A Q + + + Sbjct: 56 GFVVGIPYNMDGSESQMVVRARKFRKRLHGR-FGLPAEEADERLTTREAWQHMNPASSLK 114 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 K + +DS+AA +ILQ L++ Sbjct: 115 KAKADDLDSVAAQIILQSWLEQ 136 >gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9312] gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9312] Length = 153 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S D+G KRIGLA DP ++ P + R + + + + I N+ Sbjct: 1 MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127 FI+GLPL+ G P+ + ++ ++ +PF + +E +T S+ + I Sbjct: 61 TGFIVGLPLDEKGKMTPQAIDCMNY-GQLLSNELKLPFSYVNEHSSTWESSNRFGI---- 115 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS AA +IL++ + LE G Sbjct: 116 -KKDKSGLIDSFAAKVILEQWIKEGPELEELAG 147 >gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila] Length = 140 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI P + ++ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N + + + F DERLTT A+ L + R Sbjct: 63 PLNMDGTEQEITVRARKF-GNRLHGRFWQAVEFKDERLTTTDARARLFERGGYRALEKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD ++A LIL+ ++ Sbjct: 122 VDGVSAQLILEAWME 136 >gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489] gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489] Length = 136 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 19/140 (13%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G R G+A++D + A + K++ L +I E + I+G P MN Sbjct: 6 AIDFGKVRTGIAVTDELQIIASGLTTVATKELITF---LKDYIAKEKVDKIIVGEPKQMN 62 Query: 81 GSEG-------PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 + P + A NMI + DER T+ A + +ID +++KKR Sbjct: 63 NTASESEVLIVPFLEKLTAVFPNMIIER-------EDERFTSKMAFKTMIDSGLNKKKRK 115 Query: 134 QK--VDSIAAALILQEVLDR 151 K VD I+A +ILQ L R Sbjct: 116 NKALVDEISATIILQSYLSR 135 >gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827] gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827] Length = 139 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 31/146 (21%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG+A+ +++T TA L S + + Sbjct: 8 AFDFGTKSIGVAVG---------------QEITGTARSLASLKANDGRPDWQQIEKLLKE 52 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPLNM+G+E R F N I + V DERL+TV+A+ L + Sbjct: 53 WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVAAKAELFER 111 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151 R KVDS +A +IL+ ++ Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137 >gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12] gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+AI A+P + E+ I ++GLPLN Sbjct: 6 VLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E + F N I + V DERLTT A+ L ++ + +VD+ Sbjct: 66 MDGTEQEITQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVDA 124 Query: 139 IAAALILQEVLDRI 152 ++A LI++ + + Sbjct: 125 MSAVLIIESYFETM 138 >gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301] gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301] Length = 164 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + D G +RIG+A+ + A P + + + + E +S + E I+GLP Sbjct: 32 VLCFDFGEQRIGVAVGE--HLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+++G+E + F + R +P V DER ++V A +L + + + + + Sbjct: 90 LSLDGAETSVTQLCKKFARRLNGR-FNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148 Query: 137 DSIAAALILQ 146 D +AA ILQ Sbjct: 149 DQVAAQTILQ 158 >gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 154 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A AHP + + + + I ++G Sbjct: 9 PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E R F + R +P + DERLT++ A+ +L + V +K+ Sbjct: 69 LPVHSDGTEHELTRLARKFGRRLHGR-FGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127 Query: 135 KVDSIAAALILQ 146 DS+AA ILQ Sbjct: 128 VSDSVAAQAILQ 139 >gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99] gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+AI +P + E+ I ++GLPLN Sbjct: 6 VLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E + F N I + V DERLTT A+ L ++ + +VD+ Sbjct: 66 MDGTEQEMTQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVDA 124 Query: 139 IAAALILQEVLDRI 152 ++A LI++ + + Sbjct: 125 MSAVLIIESYFENL 138 >gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S] gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC 33707] gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S] gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC 33707] Length = 150 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLPLNMNGSE 83 RIG+A DP A P + R K +++ + I+GLP + G Sbjct: 2 RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 G AF + VP DERLTTV+A + L + V K + +D AA Sbjct: 62 GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121 Query: 144 ILQEVLDRIS 153 ILQ LD S Sbjct: 122 ILQGWLDERS 131 >gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans PsJN] gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN] Length = 146 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 + D G KRIG+A+ + R A P +V+ + + E + + E A ++GLP + Sbjct: 13 AFDYGEKRIGVAVGNSLTRRARPL-VIVQNRSREYRFEAVGKLIAEWKPDALVVGLPFHP 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ + F N ++ + +P + DER ++V A+ + N R +D+ Sbjct: 72 DGAPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAKAEIRAGN----GRADMLDAE 126 Query: 140 AAALILQEVLDRIS 153 AA++ILQ+ LD +S Sbjct: 127 AASIILQQYLDGLS 140 >gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881] gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881] Length = 133 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT++IG+A + A P L K ++ + + A ++GLPLN Sbjct: 2 ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61 Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 M+GS+ R F +H +KV++ DERL+T A++ +K + Sbjct: 62 MDGSDSESTARARKFANRLHGRFGKKVWLV----DERLSTREARE-----RTGIQKADPR 112 Query: 136 VDSIAAALILQ 146 VDS+AA +I + Sbjct: 113 VDSMAAVVIAE 123 >gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium KB13] gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium KB13] Length = 161 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L DL + K + + DLG K+ G+A+ + + + K Q ++ Sbjct: 1 MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVS 117 + ++GLP N + S + T F N I++ + +P F +E ++ S Sbjct: 61 QLVNEWQPIYLVLGLPSNRDSS----ANETTKFCLNTAKEIEKNINLPIFFVNENYSSTS 116 Query: 118 AQQILIDM-NVSRKKRIQKVDSIAAALILQEVLDRI 152 A++++ D+ N +K I VD IAA +ILQ + + Sbjct: 117 AEELIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152 >gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 1/59 (1%) Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 +FV +++ ++ + + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ LD Sbjct: 5 SFV-DLLKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQTYLD 62 >gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae] gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli] gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae] gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes] gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P L E+ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G++ R F N + + P F DERLTT A+ L + + Sbjct: 63 PLNMDGTDQEITVRARKF-GNRLHGRFGKPVEFKDERLTTTDARARLFERGGYKALDKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD ++A LI++ ++ Sbjct: 122 VDGVSAQLIVEAWME 136 >gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM 4541] gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM 4541] Length = 139 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 31/146 (21%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG+A+ +++T TA L S + + Sbjct: 8 AFDFGTKSIGVAVG---------------QEITGTARALTSLKANDGRPDWQQIEKLLKE 52 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPLNM+G+E R F N I + V DERL+TV A+ L + Sbjct: 53 WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVQVKLHDERLSTVEAKAGLFEQ 111 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151 R KVDS +A +IL+ ++ Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137 >gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b] gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b] Length = 138 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G RIG+A DP A + R K T + + E ++G+P +++ Sbjct: 6 GLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKVVVGMPKSLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQKVD 137 G++ +V FV + + +F DER TT A+ L N S+ K+R + VD Sbjct: 65 GTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYL--KNYSKKNGKERRKVVD 122 Query: 138 SIAAALILQEVLD 150 +AA++ILQ+ LD Sbjct: 123 MVAASIILQKYLD 135 >gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales bacterium GD 1] gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales bacterium GD 1] Length = 131 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +IDLG KRIGLA S + P P ++RK Q + E+ + + A +IG+PL Sbjct: 5 AIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVPL--G 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDSI 139 GS + A N+++ + + ++ DE +++ A+ ++ ++ R RI DSI Sbjct: 62 GSSEDEMRRRIAHFMNLVNFEGEI--LYQDEAGSSLEAENMMKGEIKYIRDGRI---DSI 116 Query: 140 AAALILQEVL 149 +A +ILQ L Sbjct: 117 SAMIILQRYL 126 >gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans LB400] gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1] gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400] gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1] Length = 146 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 + D G KRIG+A+ + + A P +V+ + + E + + E A ++GLP++ Sbjct: 13 AFDYGEKRIGVAVGNSLTKSARPL-VIVQNRSREYRFEAVGKLIAEWKPNALVVGLPMHP 71 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ + F N ++ + +P + DER ++V A+ + N R +D+ Sbjct: 72 DGTPHEMTQLAKRF-GNQLNGRFNLPVTWIDERYSSVEAKAEIRAGN----GRADMLDAE 126 Query: 140 AAALILQEVLDRIS 153 AA++ILQ+ LD +S Sbjct: 127 AASIILQQYLDGLS 140 >gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 147 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I + D GT+++G+A+ A P K EL I F++GLP Sbjct: 8 QMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPNVFLVGLP 67 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+ SE R F + + + DERL+T +A+ L + + + Sbjct: 68 LNMDDSESELSARARKFARR-LRHQTNIETWMVDERLSTRAARDELSHYHAQGRGKKVSA 126 Query: 137 DSIAAALILQ 146 DS+AA L ++ Sbjct: 127 DSLAATLFIE 136 >gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 168 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G KRIG+A+ + R AHP + + T+ + + I ++G P + Sbjct: 12 VLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRPTS 71 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G+ R F + R + +ERL++ AQ+ L ++ + + +D+ Sbjct: 72 LDGTPHAMTARCRRFADQLRGR-FGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHLDA 130 Query: 139 IAAALILQEVLDRI 152 +AA LILQ D + Sbjct: 131 VAAQLILQSYFDSV 144 >gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato str. DC3000] gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato T1] gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato Max13] gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato K40] gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato T1] gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 146 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 G+ P S RA F + R + DERLTT A+ + + R VD Sbjct: 69 GT--PSEMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ LD Sbjct: 126 AIAAALLLQGWLD 138 >gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505] gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505] Length = 171 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 6/140 (4%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +P IA D+G RIG+A D + P L R + E + + I Sbjct: 13 FRPGVRIA-FDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVI 71 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSR 129 +GLP +M G R + ++ R +V V V DERLTTVSA + L + Sbjct: 72 VGLPKHMGGGSSSSTRDARQWARDLASRLPQRVCVRLV--DERLTTVSAHRDLHAAGLKE 129 Query: 130 KKRIQKVDSIAAALILQEVL 149 + VD AA +IL++ + Sbjct: 130 RSFRGIVDQAAAVVILEQAI 149 >gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT 12066] gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT 12066] Length = 140 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G IG+A+ + A P + + A ++ + + ++G P+N Sbjct: 3 VLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPIN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQ-ILIDMNVSRKKRIQ 134 M+G++ R F + + D+ KVY F DERLTT A++ I Sbjct: 63 MDGTKEELTFKARKFGNRLADKFKLKVY----FKDERLTTADAKERIFSQYGYKGLASKG 118 Query: 135 KVDSIAAALILQEVLDR 151 K+D ++AALIL+ + Sbjct: 119 KIDCVSAALILEAFFEE 135 >gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis C6786] Length = 146 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68 +L + + + D G KRIG+A+ + R A P L R+ + EL++ + Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ L + Sbjct: 62 -ALVVGLPLHPDGAPHEMTQQAKRF-GNQLNGRFNLPVSWVDERYSSVEARADL----RA 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRI 152 R +VD+ AA +ILQ+ LD + Sbjct: 116 RGSGADRVDAEAARIILQQYLDEL 139 >gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179] gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179] Length = 127 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 12/134 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D+G KRIGLA+ + P P ++R Q +L F+ + ++GLP N Sbjct: 1 MVGCDVGLKRIGLALYT--QETILPMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP-N 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 ++ TRA V + I+ + P + DE ++ AQ+ + + ++++ +K Sbjct: 58 ACYTD------TRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGI 111 Query: 136 VDSIAAALILQEVL 149 +DS+AA ++L+ L Sbjct: 112 LDSLAACILLERYL 125 >gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans DMS010] gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans DMS010] Length = 125 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86 K IG+A+ A+P + + ++ + I+GLPLNM+G+E Sbjct: 2 KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61 Query: 87 VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKVDSIAAALIL 145 + R F N + + +P + DERLTT A Q+ I + ++R VD ++A LIL Sbjct: 62 TAAARRF-GNRLHGRFNIPVEWQDERLTTYEALDQMGIRSKMDTRQR-SDVDQLSAQLIL 119 Query: 146 QEVLDR 151 Q L++ Sbjct: 120 QSWLNQ 125 >gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis EO147] Length = 146 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITT 65 + +L + + + D G KRIG+A+ + R A P L R+ + EL++ Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ L Sbjct: 61 D---ALVVGLPLHPDGAPHEMTQQAKRF-GNQMNGRFNLPVSWVDERYSSVEARADL--- 113 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152 +R +VD+ AA +ILQ+ LD + Sbjct: 114 -RARGSGADRVDAEAARIILQQYLDEL 139 >gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 140 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P + ++ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 PLNM+G+E R F +H ++V F DERLTT A+ L + R Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGRFGKQVE----FKDERLTTTDARARLFERGGYRALE 118 Query: 133 IQKVDSIAAALILQEVLD 150 VD ++A LIL+ ++ Sbjct: 119 KGSVDGVSAQLILEAWME 136 >gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. syringae B728a] gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. syringae FF5] gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv. syringae B728a] gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. mori str. 301020] gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit 7] gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 146 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 G+ P S RA F + R + DERLTT A+ + + R VD Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ LD Sbjct: 126 AIAAALLLQGWLD 138 >gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254] gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254] Length = 138 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G RIG+A DP A + R K T + + E ++G+P +++ Sbjct: 6 GLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKIVVGMPKSLD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQKVD 137 G++ +V FV + + +F DER TT A+ L N S+ K+R + VD Sbjct: 65 GTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYL--KNYSKKNGKERRKVVD 122 Query: 138 SIAAALILQEVLD 150 +AA++ILQ+ LD Sbjct: 123 MVAASIILQKYLD 135 >gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994] gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994] Length = 130 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +IDLG KRIGLA+S G P P + RK Q A ++ + ++G+P+ Sbjct: 4 IIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGIPMG 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + R R H M + + DE ++ A++++ R KR ++DS Sbjct: 63 STTEDEMR----RRVAHFMNLVEFNGEIAYQDESHSSKEAEELM--KGDIRYKRDGRIDS 116 Query: 139 IAAALILQEVL 149 ++A +IL+ L Sbjct: 117 LSAKIILERYL 127 >gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 146 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 G+ P S RA F + R + DERLTT A+ + + R VD Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRNNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ LD Sbjct: 126 AIAAALLLQGWLD 138 >gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J] gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J] Length = 143 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ + F++G+P++ + Sbjct: 20 AFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E P + + F + ++ R +P + DER ++++AQ +V +D+ A Sbjct: 80 GEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957] gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957] Length = 144 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ I+ F++G+P++ Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVGFVVGMPVHPE 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEDQPMIKLAKRF-GNQLRGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. syringae 642] Length = 146 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138 G+ P S RA ++ + V DERLTT A+ + + R VD+ Sbjct: 69 GT--PSDMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126 Query: 139 IAAALILQEVLD 150 IAAAL+LQ LD Sbjct: 127 IAAALLLQGWLD 138 >gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07] gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07] Length = 144 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ ++ F++G+P++ Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPVGFVVGMPVHPE 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547] gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius DSM 20547] Length = 161 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT-----ENIAAFII 73 + ++D+G R+G+A DP A P V L L + E ++ Sbjct: 2 VWAVDVGLARVGVASGDPDGVLATP----VETVAVAPGLTALDRVVQLVRQEERSTGVVV 57 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 GLP +++G E R + + R V V V DERL+TV+A + + + V K Sbjct: 58 GLPRHLDGHESTSAVEARRWATALASRLGPTVRVWLV--DERLSTVAASRGMREAGVRAK 115 Query: 131 KRIQKVDSIAAALILQEVLD 150 ++ ++D AA ILQ LD Sbjct: 116 EQRTRIDQAAAVEILQMSLD 135 >gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia thailandensis E264] gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia thailandensis Bt4] gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia thailandensis E264] gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia thailandensis E264] Length = 146 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 13/143 (9%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68 +L + + + D G KRIG+AI + R A P L R+ + EL++ + Sbjct: 4 ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L Sbjct: 62 -ALVVGLPLHPDGA--PHEMTQRALRFGNQLNGRFNLPVSWVDERYSSVEARAGL----R 114 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 +R +VD+ AA +ILQ+ LD Sbjct: 115 ARGDAANRVDAEAARVILQQFLD 137 >gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM 16294] gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM 16294] Length = 132 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +IDLG KRIGLA S + P P ++RK Q + E+ I A +IG+PL Sbjct: 5 AIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVPL--G 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 GS + N++D + V ++ DE +++ A+ ++ + R +VDS++ Sbjct: 62 GSSEDEMRRRIEHFMNLVDFEGKV--LYQDEAGSSLEAENMM--KGKIKYIRDGRVDSLS 117 Query: 141 AALILQEVL 149 A +ILQ L Sbjct: 118 AMVILQRFL 126 >gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152] gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I ++D G R G+A++D + A ++ T L L +++ E + ++G P Sbjct: 4 ILALDFGKVRTGIAVTDELQIIASG----LKTVATNELLPFLKNYLKQEKVELILLGKPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 M+ S+ + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 60 QMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNKAL 119 Query: 136 VDSIAAALILQEVL 149 VD I+A +ILQ L Sbjct: 120 VDEISATIILQSYL 133 >gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum ATCC 12472] gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 137 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G +RIG+A+ D HP + + + I ++GLP++ + Sbjct: 2 AFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHPD 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 G E +R F N + + +P DER T+V A+Q+L + V +K R QK +D Sbjct: 62 GEEHELSALSRRFA-NRLKGRFGLPVWLVDERYTSVIAEQLLEEAGV-KKGRKQKPALDQ 119 Query: 139 IAAALIL 145 +AA IL Sbjct: 120 VAAQAIL 126 >gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia thailandensis TXDOH] Length = 146 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68 +L + + + D G KRIG+AI + R A P L R+ + EL++ + Sbjct: 4 ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ L + Sbjct: 62 -ALVVGLPLHPDGAPHEMTQQAKRF-GNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R +VD+ AA +ILQ+ LD Sbjct: 116 RGDAANRVDAEAARVILQQFLD 137 >gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ] Length = 153 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRR-FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G K GLA PGR F R ++ + Q EL I + ++G+P Sbjct: 19 ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136 ++G+E R F + ++ + DE L++ +AQ+ + + + K +++ Sbjct: 79 YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138 Query: 137 DSIAAALILQEVL 149 D +AA +IL++ + Sbjct: 139 DEVAATIILEDFM 151 >gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 151 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 6/139 (4%) Query: 10 VKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP ++ I S+D+G KRIGLA D + P L R++ + + I N+ Sbjct: 1 MKYCKPKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+GLPL+ G + + + + + ++ +PF F +E +T + Sbjct: 61 TGFIVGLPLDEAGGMTSQALDCKTYGEFLFN-ELKLPFSFVNEHSSTWESTNRF----GV 115 Query: 129 RKKRIQKVDSIAAALILQE 147 +K + +DS++A +IL++ Sbjct: 116 KKDKSGLIDSLSAKIILEQ 134 >gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis] gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis] Length = 239 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 13/132 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 IDLG R GLAIS G F +R + +T LL E FIIGLP + + Sbjct: 78 GIDLGLSRTGLAISK-GFSFKPLTVLELRGQKLET--RLLEIAEDEEADEFIIGLPKSWD 134 Query: 81 GSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 G E + + R+ + R +VY+ DE T+ A +I++ +S+ R + Sbjct: 135 GKETSQCNKVRSVAGRIAVRAAERGWRVYLQ----DEHGTSTDATYWMINVGLSKGARQK 190 Query: 135 KVDSIAAALILQ 146 +D+ AA ++L+ Sbjct: 191 SIDAYAAVMVLE 202 >gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15] Length = 144 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ + F++G+P++ Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPE 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA] gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ + F++G+P++ + Sbjct: 20 AFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEEQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum DSM 7109] gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum DSM 7109] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 52/111 (46%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G+ RIG+A+SDP A P + ++ I + I+GLP+ + Sbjct: 28 ALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIVGLPVALR 87 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 G+ + F ++ + +P DER++T++A Q VS KK Sbjct: 88 GNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKK 138 >gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum GMI1000] gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia solanacearum GMI1000] Length = 144 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ + F++G+P++ Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPE 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum IPO1609] gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia solanacearum IPO1609] Length = 144 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ I F++G+P++ Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFVVGMPVHPE 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera] Length = 213 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 25/128 (19%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +DLG R GLA+S + F VR + FIIGLP++ + Sbjct: 68 GVDLGMSRTGLALS---------KGFSVR--------------PLSEVDEFIIGLPVSDD 104 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E P+ + R+ + R + + DE T+ A +IDM S+ R +D+ Sbjct: 105 GKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSIDA 164 Query: 139 IAAALILQ 146 AA ++L+ Sbjct: 165 YAAMMVLE 172 >gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata HTCC2501] gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata HTCC2501] Length = 132 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D G KR G+A++DP + A L + + L S++ E + +IG P M+ Sbjct: 1 MDYGQKRTGIAVTDPLQMIASG---LTTVQTPELLDFLESYMGEEQVERIVIGEPRRMDN 57 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKVDSI 139 S R+F+ + R +P DER ++ A + +I+ M +++ VD I Sbjct: 58 SPSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKI 117 Query: 140 AAALILQEVL 149 +A LILQ L Sbjct: 118 SATLILQSYL 127 >gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N] gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N] Length = 131 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + A P + ++ + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L L +G + P R F + + R V V V DER +++ AQ+ L Sbjct: 62 LALATDGGDQPATLRCRRFANQLHGRFGVTVELV--DERGSSMEAQEKLGSHAPD----- 114 Query: 134 QKVDSIAAALILQEVLDRIS 153 D++AAA+ILQ LDR++ Sbjct: 115 ---DAMAAAIILQRYLDRLA 131 >gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098] gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098] Length = 145 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ID G R GLA +DP A+P + RK+ L I E A ++G Sbjct: 5 GIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAA---LAGRILEERPDAVVMG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL +G+E R V + R+V +PF F E L++ +A++ L ++ + ++ Sbjct: 62 LPLLTDGTESMTTRQVRN-VTERLKRRVPLPFYFMSELLSSEAAERELREVGRTGRRCKA 120 Query: 135 KVDSIAAALILQEVL 149 +D AA IL+ L Sbjct: 121 VLDQQAAVRILESFL 135 >gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia solanacearum MolK2] gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia solanacearum MolK2] Length = 144 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ I F++G+P++ Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFVVGMPVHPE 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC 17982] gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC 17982] Length = 162 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GT R+G++ DP P L R L + + + I+GLP ++ Sbjct: 10 GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHLR 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G EG R + + K VP V DER+T+ A L + + +D Sbjct: 70 GGEGISAKGARKYARRL---KKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVID 126 Query: 138 SIAAALILQEVLD 150 +AA +IL++ L+ Sbjct: 127 QVAAQIILEQALE 139 >gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis LMG 19424] gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424] Length = 141 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + L + + + D G K+IG+A+ + R A L V + + I N Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQ 66 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+G+P+N G E P + R F N ++ + +P + DER T+ +A M +R+ Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRF-GNQLNGRFGLPVEWVDERYTSRAA-----SMAGARR 120 Query: 131 KRIQKVDSIAAALILQEVLDRI 152 ++D+ AA +ILQ+ D+ Sbjct: 121 G---ELDAEAARIILQQYFDQF 139 >gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D] gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D] Length = 143 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + V ++ + F++G+P++ + Sbjct: 20 AFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G E P + + F N + + +P + DER ++++AQ +V +D+ A Sbjct: 80 GEEQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130 Query: 141 AALILQEVLD 150 A +ILQ+ D Sbjct: 131 ARIILQQFFD 140 >gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida subsp. salmonicida A449] gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 140 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P + ++ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 PLNM+G+E R F +H ++V F DERLTT A+ L + + Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGRFGKQVE----FKDERLTTTDARARLFERGGYKALD 118 Query: 133 IQKVDSIAAALILQEVLD 150 VD ++A LIL+ ++ Sbjct: 119 KGSVDGVSAQLILEAWME 136 >gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis RM3195] gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis RM3195] Length = 127 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP Sbjct: 6 ALDLGLKRIGLALYVE--NIAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSI 139 SE V T+ H + + +F DE T+ AQ D+ V+ +K+ K+DS+ Sbjct: 63 ASE---VEMTKRVQHFISLLEFDGEVIFVDEAYTSKEAQ----DLGVANSRKKDGKLDSL 115 Query: 140 AAALILQ 146 AA ++L+ Sbjct: 116 AALIMLR 122 >gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117] gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis Re117] Length = 157 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIAAFIIGLPLN 78 +D+G R+G+A SDP A P +R+ V + + LL I + +G P + Sbjct: 7 GVDVGLARVGVAASDPSGILATP-VMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65 Query: 79 MNGSEGPRVHSTR----AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 + G+ R A + + DERL+TV+A + L + + Sbjct: 66 LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125 Query: 135 KVDSIAAALILQEVLD 150 VD +AA ILQ+VL+ Sbjct: 126 VVDQVAATEILQQVLE 141 >gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16] gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia eutropha H16] Length = 141 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + L + + + D G K+IG+A+ + R A L V + + I N Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQ 66 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+G+P+N G E P + R F N ++ + +P + DER T+ +A M +R+ Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRF-GNQLNGRFGLPVEWVDERYTSRAA-----SMAGARR 120 Query: 131 KRIQKVDSIAAALILQEVLDRI 152 ++D+ AA +ILQ+ D+ Sbjct: 121 G---ELDAEAARIILQQYFDQF 139 >gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda SM-A87] gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda SM-A87] Length = 134 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77 + ++D G KR G+A++D + A + T + L L + E + ++G P Sbjct: 4 VMALDYGVKRTGIAVTDELQMIASGLTTVD----TSSLLNFLEDYFKKEKVETVVVGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 + S F+ ++ + V DER T+ A Q +ID + +KKR K Sbjct: 60 QKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNKAL 119 Query: 136 VDSIAAALILQEVL 149 VD ++A +ILQ L Sbjct: 120 VDEVSATIILQSYL 133 >gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus F0309] gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus F0309] Length = 162 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+GT R+G++ DP P L R L + + + I+GLP ++ Sbjct: 10 GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHLR 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G EG R + + K VP V DER+T+ A L + + +D Sbjct: 70 GGEGISAKGARKYARRI---KKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVID 126 Query: 138 SIAAALILQEVLD 150 +AA +IL++ L+ Sbjct: 127 QVAAQIILEQALE 139 >gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter upsaliensis JV21] gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter upsaliensis JV21] Length = 127 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP Sbjct: 6 ALDLGLKRIGLALYVE--NIAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 SE V T+ H + + +F DE T+ AQ + + + +K+ K+DS+A Sbjct: 63 ASE---VEMTKRVQHFISLLEFDGEVIFVDEAYTSKEAQGLGV---ANSRKKDGKLDSLA 116 Query: 141 AALILQ 146 A ++L+ Sbjct: 117 ALIMLR 122 >gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58] gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58] Length = 173 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 +D+G R+G+A +DP A P L R + + EL++ ++ A +GLP+N+ Sbjct: 22 GVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNL 81 Query: 80 NGSEGPRVHST----RAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 G P A +++ VP DERL+TVSAQ L Sbjct: 82 RGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGL 128 >gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803] gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803] Length = 159 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G +RIGLA DP P L R Q L + N+ ++GLPL+ Sbjct: 3 SLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDDQ 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 G + H + I R + +P F +E ++ +A + Sbjct: 63 GQRTDQAHHCHRYG-QRIARDLGLPLAFVNEHSSSWAAAE 101 >gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus str. MIT 9202] gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus str. MIT 9202] Length = 140 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D+GTKRIGLA DP ++ P + R + Q + + I N+ FI+G+PL+ G Sbjct: 1 MDVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKG 60 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 + + + +++ ++ +PF + +E +T + D +K + +DS +A Sbjct: 61 LMTSQAIDCKNYGQLLLN-ELKLPFSYVNEHSSTWESS----DRFGIKKDKSGLIDSFSA 115 Query: 142 ALILQEVLDRISFLES 157 +IL++ ++ LE Sbjct: 116 KIILEQWIEEGPELEE 131 >gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium HTCC2207] gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium HTCC2207] Length = 145 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLPLNM+ SE + R F + R V V V DERLT+ A+ + D Sbjct: 63 VVGLPLNMDDSESDLSNRARKFARRLQGRFAVDVEMV--DERLTSREAKSLGRDQGT--- 117 Query: 131 KRIQKVDSIAAALILQEVLD 150 + + K+D IAA+LILQ LD Sbjct: 118 QDLTKIDHIAASLILQSWLD 137 >gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619] gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619] Length = 141 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G+K+IG+A+ A L + ++ I A ++GLPLNM+ Sbjct: 9 GFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137 G+ P S RA F + R +P DERLTT A+ + R R VD Sbjct: 69 GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603] gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603] Length = 167 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------------VTQTALELLSFITTENI 68 +D+G R+G+A DP A P L R + V T +E L I E + Sbjct: 11 GVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEERL 70 Query: 69 A-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDM 125 A A +GLP +++G+ G V + A + + ++V ++ DERLT+ +A L D Sbjct: 71 AVAVYVGLPKHLSGARG--VSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDA 128 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ++ +D AA +IL L+ L S G Sbjct: 129 GRRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163 >gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea 34H] gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea 34H] Length = 148 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 6/145 (4%) Query: 12 SLKPNQPIA-----SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 S K PI D G K IG+A+ A P + L ++ Sbjct: 2 STKTKSPIGQRTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEW 61 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 ++GLPLNM+GSE + F N I + + F DERLTT A++ L Sbjct: 62 QPDFIVVGLPLNMDGSEQQLTLDAKKF-GNRIHGRFGIQVEFQDERLTTADAKEQLFARG 120 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 + + +D+ +A LI++ ++ Sbjct: 121 GFKNLKKDNIDAESARLIIESYFEQ 145 >gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis MCE9] gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis MCE9] Length = 151 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 9/128 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G K+IG+A+ + + A P + V + ++I N ++GLP+ Sbjct: 14 ILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPIT 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + G E +R F N + + +P DER ++V AQ+I D Sbjct: 74 LGGQEQEASRLSRKFA-NQLHGRFNLPVELIDERYSSVEAQEIC--------HCGPDEDH 124 Query: 139 IAAALILQ 146 AAA+IL+ Sbjct: 125 YAAAVILE 132 >gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus 525.92] gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 127 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 11/134 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ +ID+G KR+G+A G P+ ++RK Q A E+ + + ++G+ Sbjct: 2 SEKFMAIDVGLKRVGVAFGTGG--IVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGV 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + + R R H + ++ V+ DE ++ A +I D KR + Sbjct: 60 PKGGSSEDEMR----RRIEHFVSLLEISAKIVYQDEAFSSFEASEIYTDT-----KRDGR 110 Query: 136 VDSIAAALILQEVL 149 +DS+AA LIL+ L Sbjct: 111 LDSVAAMLILKRYL 124 >gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum SS9] gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 142 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 58/136 (42%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+AI A+P L K ++ + ++GL Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLN+ G E + N I + DERL+TV A+ L + R Sbjct: 64 PLNLEGGELESITPRAKKFANRIHGRFGCVVELHDERLSTVEAKAELFEHGGYRALSKGN 123 Query: 136 VDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 124 IDSQSAVVILESWFER 139 >gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1] gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1] gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51] gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1] gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1] gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1] gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51] Length = 141 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G+K+IG+A+ A L + ++ I A ++GLPLNM+ Sbjct: 9 GFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137 G+ P S RA F + R +P DERLTT A+ + R R VD Sbjct: 69 GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96] gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96] Length = 151 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 D GTK+IG A+ A P +R E++ + E A ++G+ Sbjct: 16 GFDFGTKKIGTAVGQTTTATASPLQ-TIRSINQNPNWEIIGKLIQEWRPAGLVVGISKQA 74 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDS 138 +GS+ P F + R +P DE L+T A+Q+L D ++VS K + D Sbjct: 75 DGSDNPVTPRMLKFCRQLEGR-YQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQDQ 133 Query: 139 IAAALILQEVLDR 151 +AA LILQ L+ Sbjct: 134 LAAQLILQTWLNE 146 >gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8] gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8] Length = 143 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+RIG+A P L + ++ + + ++GL Sbjct: 6 NRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ +E R F + R +V DERLT+ A+ ++ SR Sbjct: 66 PLNMDDTENEMCARARKFGKRLHGR-YHVTVEMVDERLTSYEAKGEVMAGGGSRDFGRHG 124 Query: 136 VDSIAAALILQ 146 VD AA LIL+ Sbjct: 125 VDDRAAVLILE 135 >gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida KT2440] gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida KT2440] Length = 141 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G+K+IG+A+ A L + ++ I A ++GLPLNM+ Sbjct: 9 GFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137 G+ P S RA F + R +P DERLTT A+ + R R VD Sbjct: 69 GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1] gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID G K+ G A D + P + + L+ I +NI + GLPL+ Sbjct: 2 VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E R F ++ + V V VF DE T+ A IL +K + + D Sbjct: 62 DEGKESDWCAEIRRFSEFLL-KSVKVDIVFVDEYGTSKEADFIL--RGKKKKVKNKANDL 118 Query: 139 IAAALILQEVLD 150 IAA LIL+ L+ Sbjct: 119 IAATLILENYLN 130 >gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS] gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS] Length = 133 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 11/132 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G KRIG AI + + A P + + + E+ I A ++GLP + Sbjct: 8 ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+E R F N + + + + DER T+ +V K Q D+ Sbjct: 68 PDGTEHDMTRRCRRFA-NQLHGRFALDTILVDERYTS----------SVLNFKPGQADDA 116 Query: 139 IAAALILQEVLD 150 AAALILQ+ D Sbjct: 117 HAAALILQQYFD 128 >gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 135 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAH----PRPFLVRKKVTQTALELLSFITTENIAAFI 72 Q I ++D+G KRIG+A +F P P ++RK Q A ++ + I +N + Sbjct: 2 QNIIALDIGLKRIGIA------QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILV 55 Query: 73 IGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 IG+P + + S + R H N+++ + F DE ++ A Q + + K Sbjct: 56 IGIPQDGDSS----LEMERRIKHFINLLEIPKGIEICFIDESFSSFEALQKM-QGSKKNK 110 Query: 131 KRIQKVDSIAAALILQEVL 149 K+ +DS+AA +IL+ L Sbjct: 111 KKDGSLDSLAALIILERYL 129 >gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei BCC215] Length = 146 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 7/140 (5%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 +L + + + D G KRIG+A+ + R A + Q + I A Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKPDAL 63 Query: 72 IIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L +R Sbjct: 64 VVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RARG 117 Query: 131 KRIQKVDSIAAALILQEVLD 150 +VD+ AA +ILQ+ LD Sbjct: 118 DAADRVDAEAARVILQQYLD 137 >gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str. BVAF] gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str. BVAF] Length = 146 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 30/148 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT----TENIA----- 69 I + D GTK IG+A+ G++ T T+L +L I +NI Sbjct: 7 IMAFDFGTKNIGVAV---GQKLT----------CTTTSLNVLHSIAGTPDWKNIELMYNE 53 Query: 70 ----AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLPL ++GSE ++ F + K +DER TT+ A+ + Sbjct: 54 WKPKTLIVGLPLQIDGSEQYITILSKKFAIQL-KNKFNTTVEMYDERFTTLEARSNFYNQ 112 Query: 126 NVSR---KKRIQKVDSIAAALILQEVLD 150 S+ K + K+DSIAA +IL+ L+ Sbjct: 113 YCSKFSEKIKKNKIDSIAAEIILKSWLN 140 >gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307] gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307] Length = 151 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G +RIGLA DP P P L R + Q +L + A ++GLPL+ Sbjct: 12 VLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVVGLPLD 71 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +G+ P+ R + + + + +P + +E ++ +A + Sbjct: 72 PDGAFTPQAEHCRRYGERLA-QSLSLPVAWVNEHSSSWAAAE 112 >gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp. SM9913] gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp. SM9913] Length = 149 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 45/170 (26%) Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 K++KP + + D GTK IG+AI +++T +A L + + I Sbjct: 4 KTVKPQGERTVMGFDFGTKSIGIAIG---------------QELTGSATSLKAVKAQDGI 48 Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWD 110 + ++GLPLNM+G+ + F +HN V+ D Sbjct: 49 PNWDDIAVQVKEWQPDLMVVGLPLNMDGTSQEVTFKAKKFANRLHNHYGIAVHTQ----D 104 Query: 111 ERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ERLTT A+ L + + VD+++A +IL+ SF E+S G Sbjct: 105 ERLTTADAKARLFERGGYKNLGKGNVDNMSAVIILE------SFFEASYG 148 >gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia floridanus] gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus Blochmannia floridanus] Length = 142 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 34/150 (22%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELL-------SFITTENI- 68 I + D GTK+IG+AI +K+T T +LE+L ++ E+I Sbjct: 8 IMAFDFGTKKIGIAIG---------------QKITGTTQSLEILPSKFGIPNWKKIEHIF 52 Query: 69 -----AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122 I+GLPL MNG+ ++ F + R K+ V DER TT+ A+ I Sbjct: 53 NVWKPNKLIVGLPLKMNGNTQHITLLSKRFAVQLTHRFKITVEMH--DERFTTIEARSIY 110 Query: 123 ID-MNVSRKKRIQKVDSIAAALILQEVLDR 151 +K+ +DSIAA +IL+ L++ Sbjct: 111 FQHFRYYYRKKTTPIDSIAAEIILKSWLNQ 140 >gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4] gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4] Length = 147 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G ++IG+A+ A P L + + I I+GLPLN Sbjct: 16 VFGFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLPLN 75 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+ SE + R F + + R Y V W DERL+T+ A++ L ++ S R ++D Sbjct: 76 MDQSEQLLTQAARRFGNRLHGR--YGLAVEWVDERLSTIEARERL-NLKPSSLGRHPELD 132 Query: 138 SIAAALILQEVL 149 +AA ILQ L Sbjct: 133 QVAAQCILQTWL 144 >gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica RCB] gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB] Length = 146 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G KRIG+A + AHP + + + + ++GLP + Sbjct: 4 VLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGLPTH 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ F + R+ +P F DERLT++ A+ L + + K +D+ Sbjct: 64 ADGTPHEMTRLATKFGERLA-RRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPLLDA 122 Query: 139 IAAALILQ 146 +AA LILQ Sbjct: 123 VAAQLILQ 130 >gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 124 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 21/136 (15%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID+G KRIG+A++ R+ P+ ++RK Q A ++ + + ++G+PL Sbjct: 3 IMAIDVGLKRIGVALAV--RQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPLG 60 Query: 79 MNGSEGPRVHSTRAFVHNMI-----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GP R + + + D +V V+ DE +++ A +I + +R Sbjct: 61 -----GPSEDEMRRRIEHFVSLLEFDGEV----VYQDEAMSSFEASEIY-----AESRRD 106 Query: 134 QKVDSIAAALILQEVL 149 ++DSIAA +IL+ L Sbjct: 107 GRLDSIAAMIILKRYL 122 >gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium TW-7] gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium TW-7] Length = 149 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 39/167 (23%) Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 ++ KP + + D GTK IG+A+ +++T +A L + + I Sbjct: 4 RTFKPQGERTVMGFDFGTKSIGIAVG---------------QELTGSASSLKAVKAQDGI 48 Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113 + ++GLPLNM+G+ + F N + +P DERL Sbjct: 49 PNWDHIAVQVNEWQPDLMVVGLPLNMDGTSQEVTFKAKKFA-NRLHNHYGIPVQTQDERL 107 Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 TT A+ L + + VD+++A +IL+ SF ES G Sbjct: 108 TTADAKARLFEQGGYKNLGKGNVDNMSAVIILE------SFFESFYG 148 >gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 137 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%) Query: 22 IDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID G RIG AISD F+ F + ++ F+ I FIIG PLN Sbjct: 6 IDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSR 65 Query: 81 GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G + F+ ++ D+K+ + +E ++ A +IL N+ KK+ K D Sbjct: 66 GEKTKTCLLIDEFIIHLEKNFDQKIKLI----NESYSSRKASEILHQANIKNKKQKDKKD 121 Query: 138 SIAAALILQEVLD 150 +AA +ILQ+ LD Sbjct: 122 MLAAKIILQDYLD 134 >gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC 35110] gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC 35110] Length = 143 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 10/146 (6%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 DL+K + + +ID GTKR GLA +DP + F+ + + E+ + Sbjct: 4 DLIK-----KRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKL---DG 55 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++G P N +GS + F+ + +P DE ++ +A ++LI Sbjct: 56 IEKILVGYPTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGE 115 Query: 128 SRKKRIQK--VDSIAAALILQEVLDR 151 RK R +K +DS AAAL+LQ L+R Sbjct: 116 KRKSRQKKGRLDSAAAALLLQNYLER 141 >gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198] gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198] Length = 131 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 10/134 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D+G KRIG+A G P ++R Q A +L + +N I+G+P + N Sbjct: 3 ACDIGLKRIGIAGLIEG--IILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSGN 60 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137 + R F ++++ + +V +E T++ A+Q L + R++ QK +D Sbjct: 61 AEDTKR---RIMFFVSLLETSAKILYV--NEDCTSLEARQDLSHLKKQRRQNAQKNGRID 115 Query: 138 SIAAALILQEVLDR 151 S+AA ILQ L + Sbjct: 116 SLAACKILQRYLQK 129 >gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC 51756] gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC 51756] Length = 148 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAH----PRPF--LVRKKVTQTALELL 60 ED +S P ID G++RIGLAI AH PRP + L Sbjct: 3 EDPAQSA--TGPWLGIDYGSRRIGLAI------LAHLDIAPRPLGTVANGGGGPDWPALE 54 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + A ++GL +G+E R F + R +P ++ DERL++V+A Sbjct: 55 KVLAQWAPVACVVGLTARADGTESAVARGARHFAAALSQR-YGLPILWQDERLSSVTAAV 113 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQ 146 L + + ++++ +D +AA IL+ Sbjct: 114 RLREASPRKRRQRLALDPLAACEILR 139 >gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum 3TCK] gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum 3TCK] Length = 142 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 58/136 (42%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+AI A+P L K ++ + ++GL Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL++ G E + N I + DERL+TV A+ L + R Sbjct: 64 PLDLEGGELESITPRAKKFANRIHGRFGCVVELHDERLSTVEAKADLFERGGYRSLSKGN 123 Query: 136 VDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 124 IDSQSAVVILESWFER 139 >gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium IMCC9480] gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium IMCC9480] Length = 135 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D G KRIG+A+ + R A + + + + A I+G+P Sbjct: 2 ETVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGMP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+E R F N + + +P V DER T+ V ++R +++ Sbjct: 62 FHPDGAEHEMSVRCRRFA-NQLHGRYGLPTVLVDERYTSA----------VLGQQRGERI 110 Query: 137 DSIAAALILQEVLD 150 D AAALILQ+ D Sbjct: 111 DDRAAALILQQYFD 124 >gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei K96243] gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC 23344] gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 1710b] gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei SAVP1] gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC 10229] gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC 10247] gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 1106a] gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei DM98] gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 14] gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 91] gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 9] gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei B7210] gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 7894] gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei NCTC 13177] gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 112] gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576] gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pakistan 9] gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1106b] gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC 10399] gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1655] gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pasteur 52237] gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei S13] gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1710a] gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 406e] gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC 23344] gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1710b] gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei SAVP1] gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC 10229] gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1106a] gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC 10247] gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 406e] gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pasteur 52237] gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC 10399] gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei S13] gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1655] gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576] gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pakistan 9] gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1106b] gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1710a] Length = 146 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69 +L + + + D G KRIG+A+ + R A R ++ + + + + I Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGELIAEWKPD 61 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L + Sbjct: 62 ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R +VD+ AA +ILQ+ LD Sbjct: 116 RGDAADRVDAEAARVILQQYLD 137 >gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp. succinogenes S85] Length = 134 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D G R+G+A D + A R + +K T L + I F++G+P + + Sbjct: 2 ALDYGEHRVGVAFGDSELKMAFSRE-TIDQKTTNLFERLDQLVRLNKIDEFVVGMPYHPD 60 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-VDSI 139 G + + AF+ ++ R + DE ++V AQ+ M+ +K++ + +D Sbjct: 61 GRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDRT 120 Query: 140 AAALILQEVLD 150 AAA+ILQ D Sbjct: 121 AAAIILQRWFD 131 >gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205] Length = 167 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D+G KRIGLA DP P P L R + +L + + I A ++GLPL+ Sbjct: 9 VLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILALVVGLPLD 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + R + + R + +P F +E ++ A + Sbjct: 69 AQQQPTAQAEHCRRYGERLA-RDLDLPLAFVNEYASSWDAGE 109 >gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 130 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +IDLG KRIG+A + P + P ++RK TQ A EL + + + ++G+P Sbjct: 2 IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 SE R F +++D + F DE ++ A + K + DS Sbjct: 61 -GASEEEMSRRIRHFA-SLLDFDGEIK--FQDESFSSAEAAEFASKCAKGGGKD-PRFDS 115 Query: 139 IAAALILQEVL 149 IAA +ILQ L Sbjct: 116 IAATIILQRFL 126 >gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311] gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311] Length = 158 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 5/129 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G KRIGLA D P P L+R+ Q L T + ++GLPL+ Sbjct: 10 SLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVVGLPLDAA 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + + + + + +P +E ++ +A + + R R+ DS A Sbjct: 70 GQFTEQAAHCQRYGQRLA-MALKLPLALVNEHSSSWAAAE-RYGLQGDRSGRL---DSAA 124 Query: 141 AALILQEVL 149 A+L+L++ L Sbjct: 125 ASLLLEQWL 133 >gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902] gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902] Length = 164 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D+G KRIGLA DP P P L R + L L T ++ ++GLPL+ Sbjct: 14 VLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLVVGLPLD 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 G + R + + + + +P + +E +T +A + Sbjct: 74 AAGQPTAQAEHCRRYGVRLA-QSLGLPLAWVNEHSSTWAAGE 114 >gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei MSHR346] gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 146 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 11/142 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69 +L + + + D G KRIG+A+ + R A R ++ + + + + + I Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGALIAEWKPD 61 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L + Sbjct: 62 ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R ++D+ AA +ILQ+ LD Sbjct: 116 RGDAADRIDAEAARVILQQYLD 137 >gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli 95/1000] gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli 95/1000] Length = 137 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G K+ G A D + P + + L+ I + I + GLPL+ Sbjct: 3 ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E R F ++ + V V VF DE T+ A IL + + + D Sbjct: 63 DEGKESEWCAEIRRFSEFLL-KSVKVNIVFVDEYGTSKEADFIL--RGKKKSVKKKANDL 119 Query: 139 IAAALILQEVLD 150 IAA LIL+ L+ Sbjct: 120 IAAVLILENYLN 131 >gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 144 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+AI A P L + + T F++GLPL Sbjct: 10 VMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLK 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM---NVSRKKRIQ 134 ++GSE P + F + ++++ VP DER +T A+ ++ + I Sbjct: 70 IDGSEQPITILAKIFAIQL--KELFPVPVKMHDERFSTSEARLNYFKYYHDDLCARSNI- 126 Query: 135 KVDSIAAALILQEVLDR 151 K+++IAA +IL+ L++ Sbjct: 127 KINAIAAGVILKSWLNK 143 >gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH] Length = 140 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN--IAAFII 73 Q I ID G KRIG A+++ RF P R F V+ + Q L + + +I Sbjct: 2 QYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVI 61 Query: 74 GLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 G P + S +H FV +I + VP DE TT + L ++ + + Sbjct: 62 GFPHFHYQSSIQVSIHK---FVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117 Query: 133 IQKVDSIAAALILQEVLDR 151 + D++AA LIL+ L++ Sbjct: 118 KKAKDTLAATLILERFLNQ 136 >gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola AmH] gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 130 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 19/137 (13%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I ID+G KRIG+A S+ P P ++RK Q A + + I ++GLP Sbjct: 2 EKIIGIDVGLKRIGVAFSNGS--VVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGLP 59 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSAQQILIDMNVSRKKR 132 L N R+ R FV +PF VF DE T+ ++ + V + K+ Sbjct: 60 L-TNEEMQRRI---RHFVS-------LLPFEGKIVFVDESYTSAEVEEEI--KGVIKHKK 106 Query: 133 IQKVDSIAAALILQEVL 149 ++DS+ A +++ L Sbjct: 107 DGRIDSLVAKKLIENYL 123 >gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 668] gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668] Length = 146 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69 +L + + + D G KRIG+A+ + R A R ++ + + + + I Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGELIAEWKPD 61 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L + Sbjct: 62 ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVNWVDERYSSVEARAGL----RA 115 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R +VD+ AA +ILQ+ LD Sbjct: 116 RGDAADRVDAEAARVILQQYLD 137 >gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] Length = 238 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+AIS + +P V K Q LL E + FIIGLP + Sbjct: 69 GVDLGLSRTGVAIS----KGYTVKPLTVLKSRGQKLETRLLEIAEEEEVDEFIIGLPRSS 124 Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +G E + + R+ + + + +VF DE TT A +I M +S+ +R + Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVF-DEHGTTSEASDRMIVMGLSKSERQNRS 183 Query: 137 DSIAAALILQ 146 D+ AA ++L+ Sbjct: 184 DAYAAVILLE 193 >gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium intracellulare ATCC 13950] Length = 250 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 48/111 (43%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G+ RIG+A SDP A P + R + + L + ++GLP + Sbjct: 26 GVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVVGLPRTLA 85 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 GP + DR P DERLTTVSAQ+ L V K+ Sbjct: 86 DRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAKE 136 >gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7] gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7] Length = 163 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D G +RIG+A+ P + + L ++ ++G PLN++ Sbjct: 22 GLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNLD 81 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS--RKKRIQK--V 136 G+ P + F + +R +P DER ++ A++ L + S R +++QK + Sbjct: 82 GTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGDI 140 Query: 137 DSIAAALILQ 146 D+++AA++L Sbjct: 141 DALSAAILLD 150 >gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella excrementihominis YIT 11859] gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella excrementihominis YIT 11859] Length = 150 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G KRIG+A+ + + A P + KK Q E+ ++ AA ++G+P + Sbjct: 16 VIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPAAVVVGVPRH 75 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 +G F N ++ + +P V DER ++V A+ Sbjct: 76 KDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAE 115 >gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila L48] gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 141 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G+K+IG+A+ A L + ++ I A ++GLPLNM+ Sbjct: 9 GFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDSI 139 G+ F + R +P DERLTT A+ + + R VD+I Sbjct: 69 GTPSDMSERAEKFARRLNGR-YNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVDAI 127 Query: 140 AAALILQEVLD 150 AAAL+LQ L+ Sbjct: 128 AAALLLQGWLE 138 >gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium 1_1_47] gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium 1_1_47] Length = 144 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G KRIG+A+ + + A P + KK Q E+ ++ AA ++G+P + Sbjct: 10 VIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPAAVVVGVPRH 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 +G F N ++ + +P V DER ++V A+ Sbjct: 70 KDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAE 109 >gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303] gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. MIT 9303] Length = 214 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 9 LVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 L+ + KP + I S+DLG +RIGLA DP P P L RK + L T+ Sbjct: 53 LMTATKPRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRK 112 Query: 68 IAAFIIGLPLNMNG 81 + ++GLPL+ G Sbjct: 113 VEGLVVGLPLDSKG 126 >gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster bacterium] Length = 140 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75 Q D+GTKR G+AI++ A + K + E I+ ++ FI+GL Sbjct: 3 QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P N +GSE ++F + +++ + DE L++ A+ L + Sbjct: 63 PFNKDGSEQEMTFIAKSFARKL-EKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121 Query: 136 VDSIAAALILQEVLDR 151 VD +A LILQ L+ Sbjct: 122 VDKRSAQLILQTWLNE 137 >gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str. Langford 1] gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str. Langford 1] Length = 143 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%) Query: 19 IASIDLGTKRIGLAISDPGR---------RFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + S+D+GTK++G+A+S + RF + + + +K+ EL +F E I Sbjct: 3 VLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKT---ELRNF--WEEIG 57 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 +IG SEG V S V M+ F E +++ + L +N S Sbjct: 58 VAVIG-----KASEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSS 112 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 K +K+DS +A +IL++ D I+ Sbjct: 113 NKAREKLDSYSALIILKDYFDSIN 136 >gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine bacterium EB0_35D03] Length = 142 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 D+GTKR G+AI++ A L K + +L I FI+G+PL+ Sbjct: 8 GFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGMPLDK 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + E R+F + +++ +F DE L++ A++ L + VD Sbjct: 68 DNKEQEMTFIARSFGRKL-EKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGDVDKR 126 Query: 140 AAALILQEVLDRISF 154 +A LILQ L+ ++ Sbjct: 127 SAKLILQTWLNETTY 141 >gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis OB47] gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis OB47] Length = 172 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77 I +D+G R+G+AISDP + A P + K EL T NI +IG PL Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-LMTIELKNKDLFDELDKIFHTYNIEKVVIGYPLS 61 Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKR 132 ++ + ++ + + I + V V WDER +T + ++++ ++N +++R Sbjct: 62 KLHPDLKDEKLKKIDE----ISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRR 117 >gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822] gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50] gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis] gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 133 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122 LPL ++G E P R F + + R + V V DER +++ AQQ+L Sbjct: 62 LPLTLDGQEQPASARARRFANQLHGRFGLAVELV--DERGSSMEAQQLL 108 >gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis] Length = 227 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPF-----LVRKKVTQTALELLSFITTENIAAFIIGL 75 +D G + +GLA+S G PRP + + Q A +L+ E A ++GL Sbjct: 32 GLDYGRRVVGLAVSTLG---LAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVLGL 88 Query: 76 PLNMNGS------EGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 P+ + GS + + R F NM + +P DER +T++A+++L Sbjct: 89 PVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASSGS 148 Query: 128 SRKKRIQKVDSIAAALILQ 146 R +++DS+AAA+IL+ Sbjct: 149 RRSTLSKRMDSVAAAVILE 167 >gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36] gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36] Length = 148 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 37/155 (23%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 D GTK IG+A+ +++T TA L++F + I + Sbjct: 13 GFDFGTKSIGIAVG---------------QEITGTARPLVAFKANDGIPDWDLIEKQIKE 57 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+G PLNM+G+E F + + R V DERLTT A+ L + Sbjct: 58 WQPDLVIVGKPLNMDGTEQEITKRATKFANRLTGR-FNVKTEMHDERLTTKDAKARLFEE 116 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + + +DS +A +IL+ S++E+ G Sbjct: 117 GGFKALQKGAIDSASAMVILE------SWMEAQYG 145 >gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I] gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS] Length = 133 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 LPL ++G E P R F N + + DER +++ AQQ+L Sbjct: 62 LPLTLDGQEQPASARARRFA-NQLHGHFGLAVELVDERSSSMEAQQLL 108 >gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha JMP134] gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134] Length = 141 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 9/142 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + L + + + D G K+IG+A+ + R A L V + I Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQ 66 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G+P+N G E P + R F N ++ + +P + DER ++ A M +R+ Sbjct: 67 LVVGMPVNPEGGEQPSMRLARRF-GNQLNGRYSLPVEWVDERYSSRMAA-----MGGARR 120 Query: 131 KRIQKVDSIAAALILQEVLDRI 152 ++D+ AA +ILQ+ D++ Sbjct: 121 G---ELDAEAARIILQQYFDQL 139 >gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129] gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 140 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN--IAAFII 73 Q I ID G KRIG A+ + RF P R F V+ + Q L + + +I Sbjct: 2 QYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVI 61 Query: 74 GLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 G P + S +H FV +I + VP DE TT + L ++ + + Sbjct: 62 GFPHFHYQSSIQVSIHK---FVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117 Query: 133 IQKVDSIAAALILQEVLDR 151 + D++AA LIL+ L++ Sbjct: 118 KKAKDTLAATLILERFLNQ 136 >gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08] Length = 134 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 45/82 (54%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+GLP+ +NG+E R + + +P + DER+TT +A + L D + + Sbjct: 39 VIMGLPVALNGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNAR 98 Query: 131 KRIQKVDSIAAALILQEVLDRI 152 ++ +D AA IL++VL+++ Sbjct: 99 QQRGVIDQAAAVAILEDVLEQV 120 >gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. doylei 269.97] gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. doylei 269.97] Length = 129 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + I + +K+ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKKALEYGI---ANTRKKDGKLDSL 115 Query: 140 AAALILQE 147 AA +++++ Sbjct: 116 AAFIMIKD 123 >gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas denitrificans DSM 1251] gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM 1251] Length = 130 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +IDLG KRIGLA S + P + RK Q A ++ + + A ++G+PL Sbjct: 5 AIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIPL--G 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILI-DMNVSRKKRIQKVDS 138 GS + A N++ + +F+ DE +++ A+ ++ ++ R RI DS Sbjct: 62 GSSEDEMRRRVAHFMNLV---AFEGEIFYQDESNSSIEAESMMRGEIKYIRDGRI---DS 115 Query: 139 IAAALILQEVL 149 I+A +ILQ L Sbjct: 116 ISAMIILQRYL 126 >gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana CCMP1335] gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana CCMP1335] Length = 423 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFV-FWDERL 113 ++++ +E + ++GLPL+ NGS + TR F + ++ R Y V WDER Sbjct: 238 IINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMGYNANVTLWDERY 297 Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 T+ A ++ ++R +RI + AL Sbjct: 298 TSKEAASRIVGEAIARNRRIPSASDLNGAL 327 >gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893] gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893] Length = 137 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GT+RIG+A P L + ++ + ++GLPLNM+ Sbjct: 2 AFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNMD 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 +E R F + R +V DERLT+ A+ ++ SR VD A Sbjct: 62 DTENDMCARARKFGKRLHGR-FHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDRA 120 Query: 141 AALILQ 146 A LIL+ Sbjct: 121 AVLILE 126 >gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans ES-2] gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans ES-2] Length = 170 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GT+RIG+A+ + A P + +K + + A ++GLP + + Sbjct: 21 AFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLPCSDD 80 Query: 81 GSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 GS H A R + + + DER ++++A + L V + + +D Sbjct: 81 GSP----HELTALCQRFAKRLHGRYGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALID 136 Query: 138 SIAAALILQEVLDR 151 AA ILQ D Sbjct: 137 QYAAQQILQAYFDE 150 >gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Streptococcus pyogenes M49 591] Length = 83 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78 +D+G+K +G+AISDP A + +K L + + F+IGLP N Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPKN 61 Query: 79 MNGSEGPRVHSTRAF 93 MN + GPRV ++ + Sbjct: 62 MNNTNGPRVDASITY 76 >gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans] gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans] Length = 131 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D G KRIG+A+ + + A P + + +T A I+GLP Sbjct: 2 ETVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+E R F N + + V V DER ++ V +R + Sbjct: 62 RHPDGAEHEMTVRCRRFA-NQLHGRFDVATVLVDERYSSA----------VISHQRGDLI 110 Query: 137 DSIAAALILQEVLD 150 D AAA+ILQ+ D Sbjct: 111 DDQAAAIILQQYFD 124 >gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str. Illinois] gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 159 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G + IG+A+SDP R+ A ++ ++ + + I+G P + Sbjct: 18 IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIMKVVS--DFSGIIVGTPFS 75 Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G +HS F + I +K P + DE +T +L ++ SR+K+ + Sbjct: 76 HIRNNG-WLHSIDKFAQKLSEITKK---PILMCDESSSTSDVMVLLGSLSRSRQKKWK-- 129 Query: 137 DSIAAALILQEVLDRI 152 D IAA IL++ L I Sbjct: 130 DKIAACCILEKTLCTI 145 >gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796] gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796] Length = 140 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 15/142 (10%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID G +GL+ISDP + P + R + ++ I +++ A ++G PL + Sbjct: 5 GIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDPLRTD 64 Query: 81 GSEGPRVHSTRAFVHNMIDRK---VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 S S+++ + + +K + V + +DER +++ A ++ + K K+ Sbjct: 65 FSSA----SSKSILK--VKKKLETIGVKVILFDERYSSIEALKL---QKILGNKDKGKIH 115 Query: 138 SIAAALILQEVLDRISFLESSK 159 IA++++L+ LD FL ++K Sbjct: 116 EIASSIVLKSFLD---FLSNTK 134 >gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile DSM 44702] Length = 178 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-----QTALELLSFITTENIAAFIIGL 75 +D+GT RIG+++SDP A P + K + + +L I + ++GL Sbjct: 29 GLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFVVEVVVGL 88 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+++ + + + + +P DER++T++A + V++KK + Sbjct: 89 PVSLRSHRTRSTRRAENYA-TRLRKNLDIPVRLVDERMSTMAATNAMHASGVNQKKGRSR 147 Query: 136 VDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 148 IDQAAAVHILQGWLD 162 >gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC1989] gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC1989] Length = 139 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLPLNM+ SE R F + R V F DERL+T A+Q Sbjct: 58 VVGLPLNMDDSESELCARARKFGRRLHGR-FSVDVEFMDERLSTFDAKQEAKARGHKGNY 116 Query: 132 RIQKVDSIAAALILQ 146 + +DSIAA LIL+ Sbjct: 117 KQNPIDSIAARLILE 131 >gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT 9313] gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 161 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+DLG +RIGLA DP P P L RK + L T+ + ++GLPL+ Sbjct: 13 SLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVVGLPLDAK 72 Query: 81 G 81 G Sbjct: 73 G 73 >gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665] gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665] gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665] Length = 189 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79 +D+G R+G+A +DP A P L R + + EL++ ++ A +GLP+N+ Sbjct: 38 GVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNL 97 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQIL 122 G P + + VP DERL+TVSAQ L Sbjct: 98 RGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGL 144 >gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34] gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34] Length = 143 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + D GTK IG+AI A P L K ++ + + Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60 Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +GLPL++ G E PR +H +V + DERL+TV A+ L + Sbjct: 61 VGLPLDLKGKELESITPRAKKFANRLHGRFGCQVELH----DERLSTVEAKAELFERGGY 116 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 R +DS +A +IL+ +R Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139 >gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 153 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 11/134 (8%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76 + S D G KRIGLA DP G P + + Q L L+ + E I I+GLP Sbjct: 9 VLSFDYGHKRIGLAGCDPLGITVTALSP--IHRISFQKDLTLIKSLCIEREIKGLIVGLP 66 Query: 77 LNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 L+ +G V S + + I +++ +P + +E ++ A Q N+ + R K Sbjct: 67 LDESGQN--TVQSIHCQNYGIKIAKELDLPLAWVNEHSSSWDAGQ---KYNL-QNDRTGK 120 Query: 136 VDSIAAALILQEVL 149 +DS AAL+L++ L Sbjct: 121 LDSAVAALLLEQWL 134 >gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 260.94] gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 260.94] gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 127 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + I +K+ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALEYGI---ADTRKKDGKLDSL 115 Query: 140 AAALILQE 147 AA +++++ Sbjct: 116 AAFIMIKD 123 >gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral taxon 171 str. F0337] gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral taxon 171 str. F0337] Length = 129 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Query: 66 ENIAAF--IIGLPLNMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQ 120 E AF I+GLP +M G RA+ ++ + R+V V V DERLTTV+A + Sbjct: 21 EEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPRQVCVRLV--DERLTTVTAHR 78 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149 L + + VD AA +IL++ + Sbjct: 79 DLHAAGMKERSFRGIVDQAAAVVILEQAI 107 >gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14] gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14] Length = 143 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + D GTK IG+AI A P L K ++ + + Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60 Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +GLPL++ G E PR +H +V + DERL+TV A+ L + Sbjct: 61 VGLPLDLEGKELESITPRAKKFANRLHGRFGYQVELH----DERLSTVEAKAELFERGGY 116 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 R +DS +A +IL+ +R Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139 >gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille] gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille] Length = 131 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 11/141 (7%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D G KRIG+A+ + + A P + + + A I+GLP Sbjct: 2 ETVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G E R F N + + V V DER ++ V +R + + Sbjct: 62 RHPDGEEHEMTVRCRRFA-NQLHGRFNVATVLVDERYSSA----------VISHQRGELI 110 Query: 137 DSIAAALILQEVLDRISFLES 157 D AAA+ILQ+ D + ES Sbjct: 111 DDQAAAIILQQYFDDYTQSES 131 >gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri GWSS] gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein [Candidatus Sulcia muelleri GWSS] Length = 138 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G KRIGL+I++ R A + + T + L + E+I +IGLP+ Sbjct: 4 ILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNIICTLYKYLKY---EDIDTIVIGLPIR 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKV 136 + S P + F+ + ++ + DER T+ A LI+ + +++ K+ Q Sbjct: 61 FDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKNQNF 120 Query: 137 ---DSIAAALILQEVL 149 D I+A ++LQE + Sbjct: 121 LDKDKISATILLQEYI 136 >gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia thailandensis MSMB43] Length = 146 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68 +L + + + D G KRIG+AI + R A P L R+ + EL++ + Sbjct: 4 ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ + Sbjct: 62 -ALVVGLPLHPDGAPHEMTQRAKRF-GNQLNGRFNLPVSWVDERYSSVEARA----GLRA 115 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R +VD+ AA +ILQ+ LD Sbjct: 116 RGAAADRVDAEAARVILQQYLD 137 >gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN] gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN] Length = 138 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G KRIGL+I++ R A + + T + L + E+I +IGLP+ Sbjct: 4 ILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNIICTLYKYLKY---EDIDTIVIGLPIR 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133 + S P + F+ + ++ + DER T+ A LI+ + + K Sbjct: 61 FDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKNKNF 120 Query: 134 QKVDSIAAALILQEVL 149 D I+A ++LQE + Sbjct: 121 LDKDKISATILLQEYI 136 >gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190] gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190] Length = 149 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 7/136 (5%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74 ID+G R+G+A+SDP A P + R + E+ + + ++ I+G Sbjct: 11 GIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHDVVQVIVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + G+EGP + RAF +++ + VP DERLTTV A + L + V K++ Sbjct: 71 LPRTLAGAEGPAAAAARAFADDLV-AVLDVPVELSDERLTTVVATRQLRERGVKGKRQRA 129 Query: 135 KVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 VVDQAAAVAILQGWLD 145 >gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 160 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 29/160 (18%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74 I ID G KR+G+A + P ++RK Q + +L + + ++G Sbjct: 3 IFGIDFGLKRLGVA--KVVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60 Query: 75 LPL-----------NMNGSEGPRVHSTRAFVHNMIDRKV-----YVPF----VFWDERLT 114 +P N+N G + S RA H ++ +++ + F ++ DE + Sbjct: 61 MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120 Query: 115 TVSAQQILIDMNVSRKKRIQK---VDSIAAALILQEVLDR 151 + A + L+D +++K +K +DSI+A +IL+ L+R Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160 >gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae subsp. damselae CIP 102761] Length = 141 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 8/142 (5%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + + D GTK IG+AI A P L + + + + + Sbjct: 1 MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60 Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +GLPL+M+G E PR +H +V + DERL+T A+ L + Sbjct: 61 VGLPLDMSGHELETITPRAKKFANRLHGRFGCQVELH----DERLSTAEARAELFEFGGY 116 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R +DS +A +IL+ + Sbjct: 117 RNLSKGNIDSQSAVVILESWFE 138 >gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP 101886] gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP 101886] Length = 143 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+AI A P L K + + + + ++GLP Sbjct: 5 QTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVVVGLP 64 Query: 77 LNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 L+++G E PR R F N + + V DERLTT A+ L + + Sbjct: 65 LDLHGGELETITPRA---RKFA-NRLKGRFGVNVELHDERLTTTEARASLFEYGGYKALG 120 Query: 133 IQKVDSIAAALILQEVLD 150 ++DS +A +I++ + Sbjct: 121 KGEIDSQSAVIIVESWFE 138 >gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 137 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K IG+A+ + + L K + + + + ++GLPLN Sbjct: 3 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G+ F ++ K + DERL+T A+ ++ N + + +K+ S Sbjct: 63 IDGTRQDITKKAEKFAF-LLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121 Query: 139 IAAALILQEVLDR 151 +AA +IL+ ++ Sbjct: 122 VAAVIILESWFNQ 134 >gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 124 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 11/131 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID+G KRIG+A++ + P+ ++RK Q A ++ + + ++G+PL Sbjct: 3 IMAIDVGLKRIGVALAVG--QTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPLG 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + + R R H + + V+ DE +++ A +I + +R ++DS Sbjct: 61 GSSEDEMR----RRIAHFVSLLEFDGEVVYQDEAMSSFEASEIY-----AEGRRDGRLDS 111 Query: 139 IAAALILQEVL 149 IAA ++L+ L Sbjct: 112 IAAMIVLKRYL 122 >gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter mediatlanticus TB-2] gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter mediatlanticus TB-2] Length = 130 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 12/134 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +ID+G KRIG+A + P P ++RK Q A E+ + + ++G+P Sbjct: 2 ERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGIP 60 Query: 77 LNMNGSEGPRV-HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 N R+ H T N+ID + FV DE T+ ++ + + KR + Sbjct: 61 -KTNEEMTKRIKHFT-----NLIDFNGKIEFV--DESFTSAIVEEEI--KGKIKHKRDGR 110 Query: 136 VDSIAAALILQEVL 149 +DS+AA IL+ L Sbjct: 111 IDSLAAKKILESFL 124 >gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 148 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K IG+A+ + + L K + + + + ++GLPLN Sbjct: 14 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G+ F ++ K + DERL+T A+ ++ N + + +K+ S Sbjct: 74 IDGTRQDITKKAEKFAF-LLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 132 Query: 139 IAAALILQEVLDR 151 +AA +IL+ ++ Sbjct: 133 VAAVIILESWFNQ 145 >gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1] gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1] Length = 79 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLP+ + G EG + TR FV + + + VF DER T+ A++ Sbjct: 24 VVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFEDERFTSQMAEK 72 >gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 155 Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Query: 12 SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67 +++P+ + D+G++RIG+A+ G R ++ L + E Sbjct: 6 AIRPDATVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHANGPDWVALDRVHKEWR 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 A ++G PL ++ + P AF + +R +P V DER ++V A Q Sbjct: 62 PAGLVVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERA 120 Query: 128 SRKKR---IQKVDSIAAALILQEVL 149 +KR +D++AAA+I++ L Sbjct: 121 DGRKRRRDADTLDAMAAAVIVERWL 145 >gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 142 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + D GTK IG+AI A P + + + + Sbjct: 1 MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60 Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +GLPL++ G E PR VH +V + DERL+TV A+ L + Sbjct: 61 VGLPLDLEGKELETITPRAKKFANRVHGRFGCQVELH----DERLSTVEARAELFERGGY 116 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 R +DS +A +IL+ +R Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139 >gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454] gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454] Length = 146 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 9/134 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+AI + R A + + + I ++GLP++ + Sbjct: 10 AFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPVHPD 69 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G+ R F N ++ + +P + DER ++V+A+ V VD+ A Sbjct: 70 GAPHEMTRQARRF-GNQLNGRFNLPVTWVDERYSSVAAEAAGARGAV--------VDAQA 120 Query: 141 AALILQEVLDRISF 154 A +ILQ+ D S+ Sbjct: 121 ACIILQQYFDEQSY 134 >gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37] gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37] gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium JCVI-1.0] Length = 138 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 12/136 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTEN----IAA 70 + I +ID G K+IG AI++ ++ P F V K +TA+ L F+ +N + Sbjct: 2 KYILAIDFGLKKIGTAIANTLDKY--PSAFHVFEVKNNFKTAVNNL-FLRIKNDGYELEK 58 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 +IG P S+ + + ++F +++++ +P + DE TT + + LI M++ K Sbjct: 59 IVIGFPKFHYYSDIQK--AIKSF-KQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHK 115 Query: 131 KRIQKVDSIAAALILQ 146 + D++AA LIL+ Sbjct: 116 DFKKAKDTLAAVLILE 131 >gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c] gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 155 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D+GT+RIG+A+ A + V L ++G Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKK 131 PL + G + P +AF + +R +P V DER ++V A + R++ Sbjct: 69 DPLTLEGHDQPIRKQAQAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127 Query: 132 RIQKVDSIAAALILQEVL 149 +D+IAAA+IL+ L Sbjct: 128 DADTLDAIAAAVILERWL 145 >gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR5-3] gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR5-3] Length = 142 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G +IG+A+ + P L + E+ ++G PLN Sbjct: 10 VLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPLN 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+G+ R F + R + V V DERL++ +Q + R VD Sbjct: 70 MDGTVSEFAQRARKFARRLEGRLGLSVEMV--DERLSSFEVKQQQKEAGHRGDYREHPVD 127 Query: 138 SIAAALILQEVL 149 +AA LIL++ L Sbjct: 128 DLAAELILRDWL 139 >gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp. jejuni 1336] gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp. jejuni 1336] Length = 127 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + + +K+ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115 Query: 140 AAALILQE 147 AA +++++ Sbjct: 116 AAFIMIKD 123 >gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC 51599] gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC 51599] Length = 156 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + + D G KRIG+A+ + A P L + + + + ++G P Sbjct: 11 QTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQPTGLVVGRP 70 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMN------- 126 L+ +G+ H A R + +P DER ++V+AQ+ + D + Sbjct: 71 LHPDGTP----HEVTALAERFARRLEGRFGLPVFLVDERYSSVAAQERMRDEDDEHVTRG 126 Query: 127 --VSRKKRIQKVDSIAAALILQEVL 149 + Q D+ AAA+IL++ L Sbjct: 127 GRRRKGGASQGDDATAAAIILEQYL 151 >gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54] Length = 133 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 L L+ +G E P R F N + + V DER +++ AQ++L Sbjct: 62 LALDADGGEQPATARCRRFA-NQLHGRFGVAVELVDERGSSMEAQRLL 108 >gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO] gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO] Length = 214 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 29/142 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R GLAI G + A + V KK + + + FI F++GLPL+ Sbjct: 2 IVAVDYGDARCGLAI---GEKLAR-KIMTVEKKKVISEISRIPFIN-----CFVVGLPLS 52 Query: 79 MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 M+G + F + ++VY+ DERLT+ S K + Sbjct: 53 MSGRYSQQTFKAIEFAEKLNRRFKKRVYL----IDERLTS------------SIFKNREN 96 Query: 136 VDSIAAALILQE-VLDRISFLE 156 +D + AA I ++ V ++ F E Sbjct: 97 IDGLCAAEIFEKFVFSKMKFHE 118 >gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp. jejuni 414] gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp. jejuni 414] Length = 127 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + + + +++ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFIDESGTSKEALKYGV---ANAREKDGKLDSL 115 Query: 140 AAALILQE 147 AA +++++ Sbjct: 116 AAFIMIKD 123 >gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus subsp. fetus 82-40] gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp. fetus 82-40] Length = 124 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID+G KRIG+A++ P L RK Q A + L + +N ++GLP Sbjct: 2 IVAIDVGLKRIGVAVAVLPTVVLPSEPIL-RKNRNQAAKDTLKMLKEKNATKLVVGLPKG 60 Query: 79 MNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 E + F+ + D ++ ++ DE ++ A ++ S+ + + D Sbjct: 61 -GSCEDEMERRIKHFISLVGFDSEI----IYVDEAYSSCEASEL------SKDSKDGRFD 109 Query: 138 SIAAALILQEVLD 150 SIAA +IL+ L+ Sbjct: 110 SIAAMVILKRYLN 122 >gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM 21326] gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM 21326] Length = 140 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 36/157 (22%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I S D GTK IG AI +++T TA L +F + I + Sbjct: 5 IMSFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKLI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLP +++G + + N + + +P DERL+T A+ L Sbjct: 50 KEWQPDLLVVGLPTDLHGRDLETITPRAKKFANRLHGRFGLPVELHDERLSTTEARAELF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +M + VD +A +IL+ S+ E+ G Sbjct: 110 NMGGYKALSKGNVDCQSAVVILE------SWFETQYG 140 >gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon] gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12] gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon] gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12] Length = 155 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D+GT+RIG+A+ A + V L ++G Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKK 131 PL + G + P AF + +R +P V DER ++V A + R++ Sbjct: 69 DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127 Query: 132 RIQKVDSIAAALILQEVL 149 +D+IAAA+IL+ L Sbjct: 128 DADTLDAIAAAVILERWL 145 >gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Vollum] Length = 75 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76 I +D+GTK +G+AISD G + ++ Q + +S + ++ ++GLP Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62 Query: 77 LNMNGSEGPRVHS 89 NMNG+ GPR + Sbjct: 63 KNMNGTIGPRGEA 75 >gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus 16] gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus 16] Length = 136 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 36/155 (23%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 S D GTK IG AI ++VT TA L +F + I + Sbjct: 2 SFDFGTKSIGSAIG---------------QEVTGTASPLRAFKANDGIPNWDDIEKLIKE 46 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLP +++G + + N + + +P DERL+T A+ L +M Sbjct: 47 WQPDLLVVGLPTDLHGRDLETITPRAKKFANRLHGRYGLPVELHDERLSTTEARADLFNM 106 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + VD +A +IL+ S+ E+ G Sbjct: 107 GGYKALSKGNVDCQSAVVILE------SWFEAQWG 135 >gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae] Length = 74 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + R F N + + + DERLTT+ A+ L + R K+DS Sbjct: 1 MDGTEQPISNQARKFA-NRLHGRFGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59 Query: 139 IAAALILQEVLDR 151 I+A +IL+ ++ Sbjct: 60 ISAVIILESWFEQ 72 >gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826] Length = 127 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 17/132 (12%) Query: 21 SIDLGTKRIGLAISDPGRRFAH---PRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +ID+G KRIGLA F P ++RK Q A ++ + ++G+P+ Sbjct: 7 AIDVGLKRIGLAFG-----FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGVPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 SE FV +++D + + V+ DE ++ A +I D +R ++D Sbjct: 62 G-GSSEDEMRRRIEHFV-SLLDMQANI--VYQDEAFSSSEASEIYTDT-----RRDGRLD 112 Query: 138 SIAAALILQEVL 149 S++AA+IL+ L Sbjct: 113 SVSAAIILKRYL 124 >gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1] gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 136 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+ RIG A+S R A R + RK++ + + ++GLPL Sbjct: 18 VLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPLR 75 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 +G P RAF ++D+ V + DER TT A+ + Sbjct: 76 TDGKPSPTADRVRAFGRVLMDKGYTVE--YQDERFTTQRARAL 116 >gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396] gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Hahella chejuensis KCTC 2396] Length = 158 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G KR G A+ A P + + + + + A I+G PLN Sbjct: 4 VVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGEPLN 63 Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 M+GS R F +H + +V + DERLT+ A+ ++ + R Sbjct: 64 MDGSVSEMALRARKFARRLHGRYNLRVEMA----DERLTSSEAKSMVRERYGQRDFGRFA 119 Query: 136 VDSIAAALILQEVLD 150 VDSIAA I++ L+ Sbjct: 120 VDSIAAVFIVESWLE 134 >gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp. tularensis WY96-3418] gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 136 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E S + F V RKV++ +E +T A+ L ++ + I Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp. holarctica LVS] gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp. holarctica OSU18] gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp. holarctica FSC200] gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp. holarctica 257] gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp. holarctica FSC022] gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp. holarctica URFT1] gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp. holarctica URFT1] gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp. holarctica 257] gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp. holarctica FSC022] Length = 136 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E S + F V RKV++ +E +T A+ L ++ + I Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli RM2228] gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli JV20] gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli RM2228] gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli JV20] Length = 126 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 11/128 (8%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ + A P ++RK Q A E+ + + +I+ I+G+P Sbjct: 5 ALDVGLKRIGVALCID--KIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIP-KGG 61 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + + +K+ K+DS+ Sbjct: 62 SSEEEMTRRIKHFVSLLEFDKEIR----FVDESGTSKEALGYGV---ANTRKKDAKLDSL 114 Query: 140 AAALILQE 147 AA +++++ Sbjct: 115 AALIMIKD 122 >gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73] gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas albilineans] Length = 165 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAH-PRPFLVRKKVTQT----ALELLSF 62 D +L+ + + D+G +RIG+A+ G RF R V Q AL+ L Sbjct: 12 DGAATLRHDGTVLGFDVGHRRIGVAV---GSRFGSGARALAVIDVHAQGPDWPALDRLHA 68 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQI 121 + ++G PL ++G++ P AF + R +P V DER ++V +AQ+ Sbjct: 69 QWRPH--GLVVGDPLTLDGADQPNRKRAHAFARELGARYC-LPVVLVDERSSSVEAAQRF 125 Query: 122 LIDMNVSRK 130 +D RK Sbjct: 126 AVDRAAGRK 134 >gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 127 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + + +K+ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115 Query: 140 AAALILQE 147 +A +++++ Sbjct: 116 SAFIMIKD 123 >gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp. tularensis FSC198] gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp. tularensis NE061598] Length = 136 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG++ + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E S + F V RKV++ +E +T A+ L ++ + I Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis SUMu002] gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis SUMu004] gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis SUMu006] gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis SUMu007] gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis SUMu008] gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis SUMu009] gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis SUMu010] gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis SUMu011] gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis SUMu002] gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis SUMu004] gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis SUMu006] gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis SUMu007] gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis SUMu008] gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis SUMu009] gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis SUMu010] gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis SUMu011] Length = 122 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 34/80 (42%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+GLP + G + R P DERLTTVSAQ+ L V Sbjct: 28 VIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRAS 87 Query: 131 KRIQKVDSIAAALILQEVLD 150 ++ +D AA ILQ LD Sbjct: 88 EQRAVIDQAAAVAILQSWLD 107 >gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae R3021] gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae R3021] Length = 134 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 31/114 (27%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG AI + +T TA L +F + I + Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I+GLPLNM+G+E R F N + + V DERLTT A+ Sbjct: 52 WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNVHLQDERLTTTQAR 104 >gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter xylosoxidans A8] gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter xylosoxidans A8] Length = 133 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 L L+ G E P R F N + + + DER +++ AQ++L Sbjct: 62 LALDAEGGEQPATARCRRFA-NQLHGRFGLAVELVDERGSSMEAQRLL 108 >gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni RM1221] gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni CF93-6] gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp. jejuni CG8486] gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni RM1221] gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp. jejuni CG8486] gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp. jejuni 81116] gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp. jejuni CG8421] gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp. jejuni M1] gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp. jejuni S3] gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni 327] Length = 127 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + + +K+ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115 Query: 140 AAALILQE 147 +A +++++ Sbjct: 116 SAFIMIKD 123 >gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa Temecula1] gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23] gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23] gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 155 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN---IAAF 71 P+ + D+GT+RIG+A+ G + V A++ + + Sbjct: 9 PDGIVLGFDVGTRRIGVAV---GSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGL 65 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS--- 128 ++G PL + G + P AF + +R +P V DER ++V A + Sbjct: 66 VVGDPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYK 124 Query: 129 RKKRIQKVDSIAAALILQEVL 149 R++ +D+IAAA+IL+ L Sbjct: 125 RRRDADTLDAIAAAVILERWL 145 >gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct] Length = 184 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG++ + A P + +EL I N + IIGLP Sbjct: 42 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E S + F V RKV++ +E +T A+ L ++ + I Sbjct: 102 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 157 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 158 -KVDALAACVILE 169 >gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917] gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917] Length = 158 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G +RIGLA DP P L R++ + L + ++GLPL+ N Sbjct: 2 SLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDRN 61 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 G + + + + + + +P + +E ++ +A + L Sbjct: 62 GQPTEQAMHCQRYGLRLAE-ALQLPLAWINEHSSSWAAGEAL 102 >gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231] gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231] Length = 143 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 3/137 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G +R+G+A+ P A P L ++ LL I A ++G+P + + Sbjct: 8 GFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHTD 67 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138 GS AF + +++ +P DERL++ A+ L + K VD Sbjct: 68 GSASETTLQAVAFAQRL-EQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVDQ 126 Query: 139 IAAALILQEVLDRISFL 155 AA +IL+ L+ L Sbjct: 127 FAAQIILETWLNEQRLL 143 >gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp. mediasiatica FSC147] gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 136 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E S + F V RKV++ +E +T A+ L + + I Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEFKSKKISHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa PAO1] gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2] gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa LESB58] gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa PAb1] gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016] gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58] gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016] Length = 144 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 S KP + + D GT++IG+A+ A L + + + I A Sbjct: 3 SDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAI 62 Query: 72 IIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ 119 ++GLPLNM+GS P S RA ++ + +P DERLTT +A+ Sbjct: 63 VVGLPLNMDGS--PSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAK 109 >gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01] Length = 141 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 30/149 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GTK IG AI ++VT TA L +F + I + Sbjct: 5 IMAFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDDIEKQI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLP +++G + + N + + +P DERL+T A+ L Sbjct: 50 KEWQPDLLVVGLPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTAEARAELF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 M + +D +A +IL+ + + Sbjct: 110 SMGGYKALSKGNIDCQSAVVILESWFESL 138 >gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13] gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13] Length = 149 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 11/132 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G KRIG AI + R A P + + ++ I I+GLP Sbjct: 24 ILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVKLIVGLPSY 83 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+E + F N + + + + DER ++ +V +R + D+ Sbjct: 84 PDGTEHEMTRRCKRFA-NQLRGRFSLEIIMVDERYSS----------SVLHFQRGKADDA 132 Query: 139 IAAALILQEVLD 150 AAALILQ+ D Sbjct: 133 HAAALILQQYFD 144 >gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101] Length = 151 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIGLA D P P L R + L S + I A ++GLPL+ Sbjct: 3 ALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDAQ 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + R + + R + +P +E ++ +A + Sbjct: 63 QQPTEQAEHCRRYGERLA-RHLALPLALVNEFASSWAAAE 101 >gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170 str. F0386] Length = 129 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 66 ENIAAF--IIGLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQ 120 + AF I+GLP +M G R + ++ R +V V V DERLTTV+A + Sbjct: 21 DEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQRVCVRLV--DERLTTVTAHR 78 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149 L + + VD AA +IL++ + Sbjct: 79 DLHAAGLKERSFRGIVDQAAAVVILEQAI 107 >gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1] gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1] Length = 206 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+A + L +K + L FI I GLPL+ Sbjct: 2 IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T A K Y ++ DERLTT ++I +K D+ Sbjct: 52 MSGKYTQQTFKTIAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKKDDA 97 Query: 139 IAAALILQEVLDRISFLE 156 ++AALI Q + S E Sbjct: 98 VSAALIFQSFFENSSVCE 115 >gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum EbN1] gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1] Length = 156 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G RIG+A+ + R A L + + + ++G+P +++ Sbjct: 20 AFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGMPSHLD 79 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSI 139 G+ R F N + + +P + DERL++ +A L + + R Q +D++ Sbjct: 80 GTPHEMTARCRRFA-NQLHGRFGLPVLECDERLSSAAADAALAEAGTHDWRARKQVLDAV 138 Query: 140 AAALILQEVLD 150 AA +ILQ LD Sbjct: 139 AAQIILQHFLD 149 >gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa PA7] gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 144 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP + + D GT++IG+A+ A L + + + I A ++ Sbjct: 5 KPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAIVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ 119 GLPLNM+GS P S RA ++ + +P DERLTT +A+ Sbjct: 65 GLPLNMDGS--PSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAK 109 >gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107] gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107] Length = 151 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 S+D+G KRIGLA D P P L R + L L ++ ++GLPL+ Sbjct: 3 SLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSA 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120 G P V + + + + + + +P + +E +T +A + Sbjct: 63 GQ--PTVQAVHCQRYGLRLAQTLGLPLAWVNEHSSTWAAGE 101 >gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211] gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. MIT 9211] Length = 145 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + S+D+G +RIG+A DP + R A +L ++ IIGL Sbjct: 6 SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120 PL+ G E S+ + + + I +++ +P + +E +T A Q Sbjct: 66 PLSDLGKETK--QSSYCYTYGINIAKELNLPLAWVNEHSSTWEAGQ 109 >gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001] gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001] Length = 167 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 19 IASIDLGTKRIGLAISDP-G---RRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + ++D+G +RIGLA DP G RR P L R + L + + A ++G Sbjct: 9 VLALDVGRRRIGLAGCDPLGLTVRRL----PALARGRFPADLQRLQELLAERRVEALVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 LPL+ G + R + + +P + +E +T SA + Sbjct: 65 LPLDQAGQPTEQARHCRRYGERLAV-GTGLPLAWVNEHGSTWSAAE 109 >gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM 12804] gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii] Length = 131 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL---VRKKVTQTALELLSFITTENIAAF 71 P + + + D G K+IG+AI + R A P + +R+ +LL + + Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRV--- 58 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122 ++GL L +G E P R F + + R + V V DER +++ AQ++L Sbjct: 59 VVGLALASDGGEQPATARCRRFANQLRGRYGLAVELV--DERGSSMEAQRLL 108 >gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp. novicida U112] gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112] gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] Length = 136 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E + + F V RKV++ +E +T A+ L ++ + I Sbjct: 63 LDTQNFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP] gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP] Length = 159 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 20/135 (14%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAA--FIIGLPLN 78 +D+ +RIG A+S R A R + R+++ L+L + + E+ A ++GLPL Sbjct: 36 LDVSKRRIGFAVSQG--RLAFGRGSVERRRLP---LDLKAVRLKVEDTGAEVLVLGLPLR 90 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ P R+F + ++ V + DER TT A+ + + +D Sbjct: 91 TDGAHSPAADRVRSFGRVLEEKGYRVE--YQDERFTTQRARALG----------AEDLDE 138 Query: 139 IAAALILQEVLDRIS 153 AA IL+ L R++ Sbjct: 139 AAAVQILELWLTRMA 153 >gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 129 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+ Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68 Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVDS 138 G+ P S RA ++ + V DERLTT A+ + + R VD+ Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126 Query: 139 IAA 141 IAA Sbjct: 127 IAA 129 >gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC BAA-450] gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC BAA-450] Length = 135 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 36/155 (23%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG AI +++T TA L +F + I + Sbjct: 2 AFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKQIKE 46 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLP +++G + + N + + +P DERL+T A+ L M Sbjct: 47 WQPNLLVVGLPTDLHGKDLETITPRAKKFANRLHGRFGLPVELHDERLSTTEARSELFSM 106 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + VD +A +IL+ S+ E+ G Sbjct: 107 GGYKALSKGNVDCQSAVVILE------SWFEAQYG 135 >gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 84-25] gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 84-25] gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 127 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 5 ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIP-KGG 62 Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + FV + D+++ F DE T+ A + + +K+ K+DS+ Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115 Query: 140 AAALILQE 147 +A +++++ Sbjct: 116 SAFIMIKD 123 >gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 81-176] Length = 127 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P + Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGS 63 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 E TR H + + F DE T+ A + + +K+ K+DS++ Sbjct: 64 REE----EMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV---ANTRKKDGKLDSLS 116 Query: 141 AALILQE 147 A +++++ Sbjct: 117 AFIMIKD 123 >gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG] gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG] Length = 136 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E + + F V RKV++ +E +T A+ L ++ + I Sbjct: 63 LDTQDFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR51-B] gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR51-B] Length = 143 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G ++IG+AI + P + + ++ I ++G PLN Sbjct: 8 VMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPLN 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS+ + + A ++ + P DERLT+ A+ D + +D Sbjct: 68 MDGSDS-EMGARAAKFSRQLNGRFAKPVDLVDERLTSREAKSQSRDRGHNGNYTTDPIDD 126 Query: 139 IAAALILQ 146 AAALIL Sbjct: 127 EAAALILN 134 >gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens T118] gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118] Length = 156 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73 Q ++D G KR G A+ + R A P+ + + + + AL+L + A ++ Sbjct: 33 QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAEGDARFVKIALQLKEWQPD----ALVV 88 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G+P + +G+ R F + R +P DER TT A + R R Sbjct: 89 GVPFHPDGAAHENTLRARRFARQLQGR-FKLPVFEVDERYTTTEA--------LGRGAR- 138 Query: 134 QKVDSIAAALILQEVLDRI 152 D++AA +IL++ L I Sbjct: 139 -DADAMAACIILEQFLRSI 156 >gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 146 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77 I +ID+G KRIG+A S G P L RK Q A + + + ++G+P Sbjct: 6 IIAIDIGLKRIGVAKSIRGIPLC-LEPIL-RKNRNQAANAVRTLVLELQANVLVVGIPFV 63 Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 N S + FV +++ + + VF+DE ++ A + L D + +K Sbjct: 64 DDVSKANDSICAMQRRIKHFV-GLLELESKIEIVFFDESFSSKEALEKLDDKKMRKKAHS 122 Query: 134 Q--KVDSIAAALILQEVL 149 + +DS+AA +IL+ L Sbjct: 123 KDGSLDSLAALVILERYL 140 >gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1] Length = 136 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 L+ E + + F + RKV++ +E +T A+ L ++ + I Sbjct: 63 LDTQNFETDITKAAKDFAKEIQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118 Query: 134 QKVDSIAAALILQ 146 KVD++AA +IL+ Sbjct: 119 -KVDALAACVILE 130 >gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2] gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10] gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2] gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10] Length = 206 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+A + L +K + L FI I GLPL+ Sbjct: 2 IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T A K Y ++ DERLTT ++I ++ D+ Sbjct: 52 MSGKYTQQTFKTVAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKRDDA 97 Query: 139 IAAALILQEVLDRISFLE 156 ++AALI Q + S E Sbjct: 98 VSAALIFQSFFENSSVCE 115 >gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B] gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B] Length = 202 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 31/134 (23%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G + G AI G F + K + ++L+S N ++G+PL+ Sbjct: 2 IIAIDYGNSKCGYAI---GNNFISKSGAVKTKDI----MKLIS-----NAKKIVMGIPLS 49 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT-------------VSAQQILIDM 125 M+G+ + F +N++++ V + DERLTT SA+QI +D Sbjct: 50 MSGNYSTQSLKVLTFANNLVEKGYDVFLI--DERLTTKMASSFGIKDDDAFSARQIFMDF 107 Query: 126 ----NVSRKKRIQK 135 +V++K R +K Sbjct: 108 VQNPSVAQKFRKEK 121 >gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8] gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 218 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+A + L +K + L FI I GLPL+ Sbjct: 14 IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T A K Y ++ DERLTT ++I ++ D+ Sbjct: 64 MSGKYTQQTFKTVAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKRDDA 109 Query: 139 IAAALILQEVLDRISFLE 156 ++AALI Q + S E Sbjct: 110 VSAALIFQSFFENSSVCE 127 >gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri SMDSEM] gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri SMDSEM] Length = 138 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID GTKRIGL+I P R A L + +I + I +IG PL Sbjct: 4 ILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGHPLK 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKV 136 + S P F++ + + DER ++ A LI+ N ++K+ + + Sbjct: 62 SDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQKKIL 121 Query: 137 DSIAAALILQEVL 149 D I+A L+LQ+ + Sbjct: 122 DQISAILLLQDFI 134 >gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma proteobacterium HTCC2148] gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma proteobacterium HTCC2148] Length = 98 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G PLNM+GS F + R + +P DERL++ A+Q + Sbjct: 13 LVVGEPLNMDGSVSELSEKAHKFGRRLGGR-LNLPVQMVDERLSSFEAKQQSRERGHGGD 71 Query: 131 KRIQKVDSIAAALILQEVL 149 +DS+AA LILQ L Sbjct: 72 YNKNPIDSLAAELILQTWL 90 >gi|224032587|gb|ACN35369.1| unknown [Zea mays] Length = 146 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 47 LVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L R K + A + + ++ +IA F++G P + G P + + + + + + Sbjct: 25 LCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQ--PCASAIQVSLAGELCKTGKL 82 Query: 105 ---PFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153 P+ +WDE T+ + +L +N+ + + D AA ILQ LD ++ Sbjct: 83 DDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135 >gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM 4166] Length = 142 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK+IG+A+ A L + ++ + + A ++GLPLNM+ Sbjct: 9 GFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ 119 GS P S RA F + R +P DERLTT A+ Sbjct: 69 GS--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAK 106 >gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri A1501] gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas stutzeri A1501] Length = 142 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D GTK+IG+A+ A L + ++ + + A ++GLPLNM+ Sbjct: 9 GFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLNMD 68 Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ 119 GS P S RA F + R +P DERLTT A+ Sbjct: 69 GS--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAK 106 >gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 136 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIGLA + A P + +EL + N + +IGLP Sbjct: 3 QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 L+ E + + F + +R K V + +E +T A+ L ++ + I K Sbjct: 63 LDTQDFETDITKAAKDFAKEVKERYKRNVHLI--NEAYSTREARWRLEEVKSKKVSHI-K 119 Query: 136 VDSIAAALILQ 146 VD++AA +IL+ Sbjct: 120 VDALAACVILE 130 >gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM 4359] gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM 4359] Length = 207 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 30/142 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G ++ G+A L + V EL F+ N + G+PL+ Sbjct: 2 IVAIDYGERKCGVAFGK----------ILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T + K Y ++ DERLTT A ++ ++ D+ Sbjct: 52 MSGRYSQQTFKTVEVALSF--SKKYETYL-CDERLTTRIASKV-----------SKRDDA 97 Query: 139 IAAALILQEVLDRISFLESSKG 160 ++AALI Q SF+E+ G Sbjct: 98 VSAALIFQ------SFVENPAG 113 >gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase [Arabidopsis thaliana] gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana] Length = 254 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+AIS + +P V K Q LL E FIIGLP + Sbjct: 85 GVDLGLSRTGIAIS----KGYTVKPLTVLKSRGQKLETRLLEIAEEEEADEFIIGLPRSS 140 Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +G E + + R+ + + + +VF DE TT A +I M +S+ +R + Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVF-DEHGTTSEASDRMIVMGLSKSERQNRS 199 Query: 137 DSIAAALILQ 146 D+ AA ++L+ Sbjct: 200 DAYAAVILLE 209 >gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP 69.14] gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP 69.14] Length = 141 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 30/148 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GTK IG AI +++T TA L +F + I + Sbjct: 5 IMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDEIEKQI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLP +++G + + N + + +P DERL+T A+ L Sbjct: 50 KEWQPNLLVVGLPTDLHGKDLDTITPRAKKFANRLHGRFGLPVELHDERLSTAEARSELF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDR 151 + +D +A +IL+ +R Sbjct: 110 AHGGYKALSKGNIDCQSAVVILESWFER 137 >gi|255626817|gb|ACU13753.1| unknown [Glycine max] Length = 110 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%) Query: 56 ALELLSFITTENIAAFIIGLPLNMN--GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111 A +L S I ++ F+IG+P + + S+ +V + F+ N+ K+ V + +W+E Sbjct: 2 ASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQV---KVFIDNLCRTKMLEGVKYAYWNE 58 Query: 112 RLTTVSAQQILIDMNVSRKKRIQK-VDSIAAALILQEVLDRIS 153 T+ + + +L +N++ + +D AA ILQ LD ++ Sbjct: 59 SFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101 >gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii ATCC 43553] gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii ATCC 43553] Length = 136 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G K+IG+AI + R A P + + + + + ++G Sbjct: 5 PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 L L+ +G E R F N + + + DER +++ AQ++L Sbjct: 65 LALDADGGEQAATARCRRFA-NQLHGRFGIAVELVDERGSSMEAQRLL 111 >gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4] gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4] Length = 141 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 30/149 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GTK IG AI +++T TA L +F + I + Sbjct: 5 IMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKQI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++G P +++G + + N + + +P DERL+T A+ L Sbjct: 50 KEWQPDLLVVGYPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTTEARAELF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 M + +D +A +IL+ + + Sbjct: 110 SMGGYKALSKGNIDCQSAVVILESWFESL 138 >gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora] gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora] Length = 141 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%) Query: 16 NQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +QP I +D+G RIG+A D P L R L L I+ ++ A +I Sbjct: 5 SQPCSILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVEALVI 64 Query: 74 GLPLN-MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 G+PLN + ++ R H + + + +P + +E +T S D + Sbjct: 65 GIPLNDLAQITKQAIYCRRYGKH--LAQTLRLPVAWVNENGSTWSTS----DQYKIYNDK 118 Query: 133 IQKVDSIAAALILQE 147 ++DS+ AAL+L++ Sbjct: 119 SGRLDSMVAALLLEQ 133 >gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701] gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701] Length = 148 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D+G KRIGLA D P P L R + L L ++ ++GLPL+ G Sbjct: 1 MDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAG 60 Query: 82 SEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120 P V + + + + + + +P + +E +T +A + Sbjct: 61 Q--PTVQAVHCQRYGLRLAQTLGLPLAWVNEHSSTWAAGE 98 >gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday junction resolvase in mycoplasmas and B. subtilis) [uncultured gamma proteobacterium HF0010_11B23] Length = 128 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D GTK IG+ I++ P P + T L+ L NI +IG+P Sbjct: 8 VLSLDYGTKNIGICIAETYTGQTKPLPVIENNDSFYTELDNLLKEWRPNIV--LIGIPPK 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+ ++ +A++ N + ++ + + + + K+ DS Sbjct: 66 MSSDFNDGLNEAKAYIIN-------------EHKIKVIEVNEDFTTQGLDKCKKNHMKDS 112 Query: 139 IAAALILQEVLDRIS 153 +A LI Q+ + I Sbjct: 113 YSAELIFQDWFNDID 127 >gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp. novicida GA99-3549] gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549] Length = 138 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +ID G RIG+A + A P + +EL I N + IIGLPL+ Sbjct: 9 AIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPLDTQ 68 Query: 81 GSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 E + + F V RKV++ +E +T A+ L ++ + I KVD Sbjct: 69 DFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI-KVD 123 Query: 138 SIAAALILQ 146 ++AA +IL+ Sbjct: 124 ALAACVILE 132 >gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 140 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 30/151 (19%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ I + D GTK IG AI ++VT TA L +F + I + Sbjct: 2 SRTIMAFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDEIE 46 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLP++++G + N + + V DERL+T A+ Sbjct: 47 KQIKEWQPHLIVVGLPMDLHGKALESITQRAKKFANRLHGRFGVDVELHDERLSTTEARS 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 L M + VD +A +IL+ + Sbjct: 107 ELFAMGGYKALTKGNVDCQSAVVILESWFEH 137 >gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium SWAT-3] gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium SWAT-3] Length = 140 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 30/147 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GTK IG AI +++T TA L +F + I + Sbjct: 5 IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLP +++G + N + + V DERL+T A+ L Sbjct: 50 KEWQPNLIVVGLPTDLHGRALETITPRAKKFANRLKGRFGVDVELHDERLSTAEARADLF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 DM + VD+ +A +IL+ + Sbjct: 110 DMGGYKALSKGNVDNQSAVVILESWFE 136 >gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222] gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32] gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222] gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32] Length = 140 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 36/157 (22%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GTK IG AI +++T TA L +F + I + Sbjct: 5 IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLP +++G + + N + + V DERL+T A+ L Sbjct: 50 KEWQPNLIVVGLPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +M + VD+ +A +IL+ S+ E+ G Sbjct: 110 EMGGYKALSKGNVDNQSAVVILE------SWFEAQYG 140 >gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 71 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D GTK IG+AI A P P + + T + + I+GLPLNM+ Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66 Query: 81 GSEGP 85 G+E P Sbjct: 67 GTEQP 71 >gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95] gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95] Length = 230 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 14/134 (10%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N + ID GT G+AI P+ + +K+ LE L + + + GL Sbjct: 6 NLKVYGIDYGTSNCGIAILKQDVNIPLPKETIKSEKL----LEFLVSLDLSHDDLIVFGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P++M+G +S ++F+ I K+ F DERLTT S + VS KK Sbjct: 62 PISMSGR-----YSKQSFLSIDEAIKIKEKIGCKIYFVDERLTTSSLYS-EVRGQVSYKK 115 Query: 132 RIQKVDSIAAALIL 145 + D ++ LIL Sbjct: 116 VKRTKDQNSSVLIL 129 >gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC BAA-1116] gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116] Length = 136 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 30/147 (20%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71 + D GTK IG AI ++VT TA L +F + I + Sbjct: 2 AFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDDIEKQIKE 46 Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++GLP +++G + + N + + +P DERL+T A+ L + Sbjct: 47 WQPDLLVVGLPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTAEARAELFSI 106 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152 + +D +A +IL+ + + Sbjct: 107 GGYKALSKGNIDCQSAVVILESWFENL 133 >gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis MIT 98-5491] gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491] gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491] gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 133 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I ++D+G KRIG+A S P P ++RK Q A E+ I I I+G+P Sbjct: 2 QSILALDIGLKRIGIAKSI--HNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGIP 59 >gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865] gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865] Length = 155 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67 +++P+ + D+G++RIG+A+ G R ++ T L + E Sbjct: 6 AIRPDGTVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHATGPDWAALDRVHKEWR 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 +IG PL ++ + P AF + +R +P V DER ++V A Q Sbjct: 62 PDGLVIGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERA 120 Query: 128 SRKKR 132 +KR Sbjct: 121 DGRKR 125 >gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1] gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1] Length = 152 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 + D G KRIG+A+ + R A + + I A ++GLPL+ + Sbjct: 13 AFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRPDALVVGLPLHPD 72 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 G+ R F N ++ + +P + DER ++V A+ L Sbjct: 73 GTPHEMTQQARRFG-NQLNGRFSLPVSWIDERYSSVEARAQL 113 >gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01] gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01] Length = 140 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 30/147 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71 I + D GTK IG AI +++T TA L +F + I + Sbjct: 5 IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49 Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123 ++GLP +++G + + N + + V DERL+T A+ L Sbjct: 50 KEWQPNLIVVGLPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLF 109 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150 +M + VD+ +A +IL+ + Sbjct: 110 EMGGYKALSKGNVDNQSAVVILESWFE 136 >gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1] gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1] Length = 141 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 55/135 (40%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P K ++ + + ++GL Sbjct: 3 SRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +++G + + N + + + DERL+T A+ L +M + Sbjct: 63 PTDLHGKALEEITARAKKFANRVHGRFGLQVELHDERLSTAEARAELFEMGGYKALSKGN 122 Query: 136 VDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 123 VDCQSAVVILESWFE 137 >gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53] Length = 125 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%) Query: 29 IGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87 +G AISD F+ F + ++ F+ I FIIG PLN G + Sbjct: 1 MGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTC 60 Query: 88 HSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 F+ ++ D+K+ + +E ++ A +IL N+ KK+ K D +AA +I Sbjct: 61 LLIDEFIIHLEKNFDQKIKLI----NESYSSRKASEILHQANIKNKKQKDKKDMLAAKII 116 Query: 145 LQEVLD 150 LQ+ LD Sbjct: 117 LQDYLD 122 >gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826] gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826] Length = 134 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G ++ G+A+ + A P L A +++ +++ +IGLP Sbjct: 6 ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G E P R + +P + DE L++ A+ +R ++VD+ Sbjct: 66 RDGKEHPLAAPIR-RIGAKCQEAFGLPVHYIDEYLSSHEAR--------ARLPGEKEVDA 116 Query: 139 IAAALILQEVL 149 +AAA+I ++ L Sbjct: 117 MAAAIIAEDWL 127 >gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori India7] Length = 134 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R+ Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ---- 134 R+ F+ ++D K + VF +E ++V A + L + ++ KR+ Sbjct: 60 SYADTNARIEH---FIK-LVDFKGEI--VFINEDNSSVEAYENLEHLG-NKNKRLAIKDG 112 Query: 135 KVDSIAAALILQEVLDRI 152 ++DS++A IL+ ++ Sbjct: 113 RLDSLSACRILERYYQQV 130 >gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32] Length = 134 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAMLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF DE +++ A + L + K+ + + Sbjct: 60 SYADTNARIEH---FI-KLLDFKGEI--VFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQQV 130 >gi|223996479|ref|XP_002287913.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977029|gb|EED95356.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 242 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 19/109 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKK----------VTQTALELLSFITT 65 + +D+ +RIG+A+S+ + F+ P L++ + ++ LEL + + Sbjct: 29 VMGLDITRERIGIAVSEHPKHFSEPLALNSILLQDRDSSSNRSKGIAKESLLELEAAVRK 88 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-----PFVFW 109 ++ AF++ PLN G G + + +++D+ V PF W Sbjct: 89 HHVCAFVVNWPLN-EGRMGEQCGKVLQVLDSVMDQSNSVVTRKRPFTLW 136 >gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath] gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus str. Bath] Length = 151 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G + IG+A+ A P L + + + I A ++GL + Sbjct: 15 GFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVVGLSHQQD 74 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSI 139 GSE P T F + R +P DE LTT ++ + ++V D + Sbjct: 75 GSENPITAPTLRFCRQLEGR-YRLPVYTVDETLTTAESRTHFYQRRRRKSVEFEQVKDEM 133 Query: 140 AAALILQ 146 AA LILQ Sbjct: 134 AAQLILQ 140 >gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 190 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLPLN 78 +D G R G+A++ P+P + K + T+ ++ + E + ++GLPL+ Sbjct: 22 GVDYGLVRTGVAVT----VGYDPKPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLPLH 77 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----VPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 NG+ + + T FV + + + V +DER T+ +A N + Sbjct: 78 KNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRN-PHQPLY 136 Query: 134 QKVDSIAAALILQ 146 +D+ AA +IL+ Sbjct: 137 GTLDADAACIILE 149 >gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891] gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891] Length = 141 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 36/160 (22%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71 ++ I + D GTK IG AI +++T TA L +F + I + Sbjct: 2 SRTIMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIE 46 Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++GLP +++G + + N + + V DERL+T A+ Sbjct: 47 KQIKEWQPDLVVVGLPTDLHGRDLETITPRAKKFANRLHGRFGVAVELHDERLSTTEARA 106 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L M + VD +A +IL+ S+ E+ G Sbjct: 107 DLFAMGGYKALSKGNVDCQSAVVILE------SWFEAQYG 140 >gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. campestris str. B100] gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv. campestris] Length = 155 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 12 SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67 +++P+ + D+G++RIG+A+ G R ++ L + E Sbjct: 6 AIRPDATVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHANGPDWVALDRVHKEWR 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 A ++G PL ++ + P AF + +R +P V DER ++V A Q Sbjct: 62 PAGLVVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERA 120 Query: 128 SRKKR 132 +KR Sbjct: 121 DGRKR 125 >gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri CARI] gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri CARI] Length = 138 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G KRIGL+I++ R A + + T LE+ ++ E+I +IGLP+ Sbjct: 4 ILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLIST-LEM--YLKYEDIDTIVIGLPIK 60 Query: 79 MNGSEGPRVHSTRAFVH-------NMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSR 129 P + F+ N+I +++ DER T+ A L++ + Sbjct: 61 YYNYLFPIEKKIKKFIKIIKYKYPNLIIKRL-------DERFTSKIANYYLLNSVFKKKK 113 Query: 130 KKRIQKVDSIAAALILQEVL 149 +K +D I+A L+LQ+ + Sbjct: 114 RKNKSLLDKISATLLLQDYI 133 >gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701] gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701] Length = 161 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + P + + ++D+G +RIGLA DP P L R L + + Sbjct: 1 MSRQPPPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRV 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSA 118 A ++GLPL+ S+ P V + + + + + +P + DE ++ A Sbjct: 61 QALVVGLPLDA--SQQPTVQARHCRRYGQRLAQALELPLAWVDEHGSSWEA 109 >gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 147 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75 ++DLGTK G AISD A + ++ TA+ E++ E I ++G Sbjct: 5 ALDLGTKSCGFAISDLLGIIASGLDNFIYEENDFTAVLAKIDEIMINYHHE-IDTIVLGY 63 Query: 76 PLNM-NGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 P N+ +GS+ R + +F H + K+ + V+ DER +T A Q L + V Sbjct: 64 PTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKI--VYEDERFSTKIATQRLKNSCVKA 121 Query: 130 KKRIQKVDSIAAALILQEVLDRISF 154 K + D ++A +IL+ L + F Sbjct: 122 AKIKKVKDKMSAVVILESYLSKNHF 146 >gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 140 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 7/136 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77 I +D G GL+I+D + FA F + T+ + L SF+ E I +IGLP Sbjct: 4 ILGMDYGKVITGLSITDDEQIFA----FGLDSVPTEKLMSFLESFLYHEKIDKIVIGLPK 59 Query: 78 NMNGSEGPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +N + + + + F+++ R + DER T+ A +I++ + +K+R + + Sbjct: 60 KLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKKVI 119 Query: 137 -DSIAAALILQEVLDR 151 + I+A +ILQ L R Sbjct: 120 LNQISATIILQSYLAR 135 >gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102] gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 157 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D+G KRIGLA DP P L R + L + ++GLPL+ Sbjct: 7 VLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLVVGLPLD 66 Query: 79 MNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTVSAQQ 120 G P + + + + + +P + +E +T +A + Sbjct: 67 AAGQ--PTAQADHCLRYGRRLAQALQLPLAWVNEHSSTWAAGE 107 >gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division TM7 single-cell isolate TM7a] Length = 75 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVDSIAAALILQEVLDRIS 153 + F DER TT A+ L N S+K +R + VD +AA++ILQ+ LD ++ Sbjct: 25 IQIFFVDERYTTTEAEHYL--KNYSKKNGKERRKVVDMVAASIILQKYLDTLT 75 >gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str. Miyayama] gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 159 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + SID G + +G+A+SDP R+ A ++ ++ + + I+G P + Sbjct: 18 VISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIMKVVS--DFSGIIVGTPFS 75 Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G + F + + RK P + DE +T +L ++ SR+K + Sbjct: 76 HIRNNG-WLDFIDKFAQKLSEVTRK---PILMCDESSSTSDVMILLSSLSRSRQKEWK-- 129 Query: 137 DSIAAALILQEVLDRI 152 D IAA IL++ L I Sbjct: 130 DKIAACCILEKTLCTI 145 >gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori Gambia94/24] Length = 134 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 R+ F+ ++D K + VF +E ++V A + L + KK K Sbjct: 60 SYADTHARIEH---FI-KLVDFKGEI--VFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQQV 130 >gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens] Length = 548 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFII 73 +P +D G +R G+ + GR +A RP V + +T A +++ E AF++ Sbjct: 474 EPTLGVDFGLRRTGVCV---GRGYA-SRPLEVVENCGNLTAHAAAIVALALREGATAFVV 529 Query: 74 GLPLNMNGSE 83 GLPL+ +GSE Sbjct: 530 GLPLDRDGSE 539 >gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1] gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1] Length = 457 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSF 62 ED+++ PI +DL KRI LA+ PG R A P FL R K+ T E ++ Sbjct: 80 EDILELQGHGGPIV-LDLLLKRI-LALPLPGLRIARPGEFLERAFLNNKIDLTQAEAVAD 137 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV--FWDERLTTVSAQQ 120 + N ++ G R+ +AF N+ID + YV F +E + +S + Sbjct: 138 LINANSEQAARSAVNSLQGVFSDRI---KAFSQNLIDLRAYVEAAMDFSEEEINFLSDGK 194 Query: 121 ILIDMN--VSRKKRIQ 134 I +N ++ K++Q Sbjct: 195 IEGQLNNIINELKKVQ 210 >gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori Lithuania75] Length = 134 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A G P ++R+ Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAALLNG--VILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF +E +++ A + L + K+ + + Sbjct: 60 SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQQV 130 >gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38] gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38] Length = 134 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF +E +++ A L + K+ + + Sbjct: 60 SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQKV 130 >gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX] gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX] Length = 159 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 13/139 (9%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPLN 78 ++D G RIG+A SDP A P + R + + A +L + E I+G P + Sbjct: 8 AVDPGAARIGVARSDPDGILAIPVETIRRGPGDLDRIAALVLEYEARE----VIVGYPAS 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-------IDMNVSRKK 131 ++G+EG + RAF + R VP DERLTTV+A+ L + Sbjct: 64 LSGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRA 123 Query: 132 RIQKVDSIAAALILQEVLD 150 R +D AA ++LQ LD Sbjct: 124 RRSVIDQAAATVLLQNALD 142 >gi|328772736|gb|EGF82774.1| hypothetical protein BATDEDRAFT_22908 [Batrachochytrium dendrobatidis JAM81] Length = 961 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRR 39 ED +KSLK NQ + G ++IG+AISDP ++ Sbjct: 745 EDAIKSLKMNQAVIE-KTGDRKIGVAISDPTKK 776 >gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori 26695] gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 134 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAALLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF +E +++ A + L + K+ + + Sbjct: 60 SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQKV 130 >gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30] Length = 134 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAMLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF +E +++ A + L + K+ + + Sbjct: 60 SYADTNARIEH---FI-KLLDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQQV 130 >gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas maltophilia R551-3] gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia R551-3] Length = 164 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 2/115 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D+G++RIG+AI A + + I ++G PL Sbjct: 22 VLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLVVGDPLT 81 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRKKR 132 ++G + P + F + +R +P V DER ++V +A++ ++ RK+R Sbjct: 82 LDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEGRKRR 135 >gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori Shi470] gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori Shi470] Length = 134 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF +E +++ A + L + K+ + + Sbjct: 60 SYADTNARIEH---FIK-LLDFKGEI--VFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACGILERYCQQV 130 >gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori HPKX_438_CA4C1] Length = 156 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 12/148 (8%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 DL S+ + I D+G KRIG+A+ G P ++R Q + +L + +N Sbjct: 14 DLTSSIACKRLIIG-DVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKN 70 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++G P R+ + ++D K + VF +E +++ A + L + Sbjct: 71 IQVLVVGKPNESYADTNARIE----YFIKLLDFKGEI--VFINEDRSSIEAYENLEHLGK 124 Query: 128 SRKK---RIQKVDSIAAALILQEVLDRI 152 K+ + ++DS++A IL+ ++ Sbjct: 125 KNKRLATKDGRLDSLSACRILERYCQQV 152 >gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83] Length = 134 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIATLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ + ++D K + VF +E +++ A + L + K+ + + Sbjct: 60 SYADTNARIE----YFIKLLDFKGEI--VFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEVLDRI 152 +DS++A IL+ ++ Sbjct: 114 LDSLSACRILERYCQQV 130 >gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax benzoatilyticus JA2] gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax benzoatilyticus JA2] Length = 136 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79 + D G +R+G+A+ + A RP E ++ + E A ++G+P + Sbjct: 15 AFDFGVRRVGVAVGNT--LLAEARPLKTVAAEGDARFEAIARLIDEWQPDALVVGVPFHP 72 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 +G+E R F + R +P DER TTV Sbjct: 73 DGAEHDNTRRARRFARQLHGR-FRLPVHEVDERYTTV 108 >gi|290999126|ref|XP_002682131.1| guanine nucleotide binding protein alpha subunit [Naegleria gruberi] gi|284095757|gb|EFC49387.1| guanine nucleotide binding protein alpha subunit [Naegleria gruberi] Length = 657 Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQ 119 +I T + +F +G+ L +N + + +T+ N M+D +Y F +D R+T++ ++ Sbjct: 300 YIITNLLQSFSLGVSLYLNEVDAIKNGTTKVTRENRFMLDETLYEKFKEFDSRVTSLQSR 359 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L D +S+ + + V S+ +++VL+R + +S Sbjct: 360 YTLFD--ISKLPQKEFVVSMWEDTDVRKVLNRYALTDS 395 >gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10] gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10] Length = 134 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 11/131 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNK 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ F+ ++D K + VF +E +++ A + L + K+ + + Sbjct: 60 SYTDTNARIEH---FI-KLLDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQ 146 +DS++A IL+ Sbjct: 114 LDSLSACRILE 124 Searching..................................................done Results from round 2 >gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 160/160 (100%), Positives = 160/160 (100%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ Sbjct: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 >gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 167 Score = 217 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 140/159 (88%), Positives = 152/159 (95%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ Sbjct: 61 SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+ Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159 >gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4] gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4] Length = 160 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 L ++D + L PN + +DLGTK IGLA+SD GR A P + RKK TQ A +LL Sbjct: 5 PALSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLD 64 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + ++ ++GLPLNM+GSEGPR +TRAF N+ +K +P +WDERL+T + + Sbjct: 65 ICAKQEVSGLVLGLPLNMDGSEGPRAQATRAFCRNL-SQKTELPITYWDERLSTAAVTRT 123 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SR KR + VD +AAA ILQ LDR+ + +S Sbjct: 124 LLEADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160 >gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare Y25] gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare Y25] Length = 156 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +ED +L P + + +DLGT IG+A+SD A P + RKK + A LL Sbjct: 1 MICESVEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I NIA ++GLPLNM+GSEGPR STRAF N+ R +P V+WDERL+TV+A++ Sbjct: 61 KIIAARNIAGIVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTDLPIVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ + SRK+R + +D +AA ILQ VLDR+ L Sbjct: 120 ALLEADTSRKRRDEVIDHVAAGFILQGVLDRLRHLRR 156 >gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum SL003B-26A1] gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum gilvum SL003B-26A1] Length = 166 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 L +ED V +L P + +DLGT+ IGLA+SD GR A P + R+K T A +LL Sbjct: 5 PSLSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLK 64 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + ++GLPLNM+GSEGPRV +TRAF N+ ++ +P +WDERL+T + + Sbjct: 65 ICAEHRVGGLVLGLPLNMDGSEGPRVQATRAFARNLAEK-TDLPITYWDERLSTAAVTRT 123 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 LI+ + SR +R + VD +AAA ILQ LDR+ +L S+ Sbjct: 124 LIEADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161 >gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium Y4I] gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium Y4I] Length = 157 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 64/153 (41%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ED +L P + +DLGTK IG+A+SD A P + RKK + A LL I Sbjct: 6 FEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 +I+ ++GLP NM+G+EGPR STRAF N++ + +P FWDERL+TV+A++ L++ Sbjct: 66 RDISGILLGLPRNMDGTEGPRCQSTRAFARNLM-QLTDLPISFWDERLSTVAAEKALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + +RK+R + +D +AA+ ILQ LDR+ L++ Sbjct: 125 DTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157 >gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512] Length = 164 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021] gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C] gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C] Length = 165 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF E IAAFIIGLP+NM+GSEGPR +TRAFV NM K +PFV WDERL+TV+A++ Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNM-GEKTDIPFVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 +LI+M+VSRKKR +++DS AA+ ILQ LDR++ L Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158 >gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062] gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062] Length = 165 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 1/153 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 L +ED +L + + IDLGTK IGLA++D GR+ A P + RKK TQ LL Sbjct: 5 PSLSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLD 64 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + +IGLPLNM+G+EGPR +TRAFV N+ +K +P +WDERL+T + + Sbjct: 65 LCHEHGVFGLVIGLPLNMDGTEGPRCQATRAFVRNLA-QKTEIPITYWDERLSTAAVTRT 123 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 LI+ + SR +R + VD +AA ILQ LDR+++ Sbjct: 124 LIEADRSRARRAELVDKMAATYILQGFLDRVNY 156 >gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43] gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43] Length = 162 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 85/159 (53%), Positives = 119/159 (74%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ +EDL L P Q IA +DLGTK IGLA+SD R A PRP + R+K T A++LL Sbjct: 1 MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + A +IGLP+NM+GSEGPRV +TRAFV NMI++ +PFVFWDERL+TV+A++ Sbjct: 61 TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIEK-TDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 LI+M+VSRKKR +++DS AA+ ILQ LDR+ L ++ Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAAA 158 >gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca bermudensis HTCC2601] gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601] Length = 158 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IED +L ++ +A +DLGTK IG+A+SD A P + RKK T A LL Sbjct: 1 MIHDEIEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I ++GLP NM+GSEGPR STRAF N R P FWDERL+TV+A++ Sbjct: 61 EILVKREIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SR KR + +D +AA+ ILQ LDR+ L ++ Sbjct: 120 ALLEADTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157 >gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42] gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN 42] Length = 164 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PF++WDERL+TV+A++ Sbjct: 61 DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +LI+M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159 >gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652] gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652] Length = 164 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +A F+IGLP+NM+GS GPRV +TRAFV NM + K +PFV+WDERL+TV+A++ Sbjct: 61 DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EEKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193] gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193] Length = 157 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ED +L +A +D G K +G+AISD A P + RKK T A L Sbjct: 1 MIYDEFEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I ++GLP NM+GSEGPR TRAF N+ R +P FWDERL+TV+A++ Sbjct: 61 EIVKKREIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-SRLTELPIGFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ + SRK+R + +D +AA+ ILQ LDR+ L++ Sbjct: 120 ALLEADTSRKRRAELIDHVAASYILQGALDRMRHLKN 156 >gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b] gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b] Length = 158 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +L PI +DLGTK IG+AISD A P + RKK + A LL Sbjct: 1 MICETIGAFAMTLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 T +A ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ Sbjct: 61 EIATQREVAGLVLGLPRNMDGSEGPRCQSTRAFARNL-EPLTELPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L++ + SRK+R + +D++AA+ ILQ VLDR++ + +++ Sbjct: 120 ALLEADTSRKRRAEVIDNVAASYILQGVLDRLTHMRAAQ 158 >gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771] Length = 166 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 3 MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 63 DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161 >gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 156 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ +E+ ++ + IA +DLGTK IGLA+SD G+RFA PR L R K T A L+ Sbjct: 1 MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +NI +IGLPLNM+GSEGPR +TRAF+ N R P + WDERL+TV+A++ Sbjct: 61 AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRN-YSRFDERPVLLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ +VSRKKR +++DS AA+ ILQ LDR+S L S Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156 >gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K T A LL Sbjct: 1 MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus] Length = 159 Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++D +L +A +DLGTK IG+A+SD R A P + R+K T +L+ Sbjct: 1 MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLM 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ Sbjct: 61 KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +++ ++SRK+R + VD +AA ILQ LDR++ L + G Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159 >gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222] gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222] Length = 158 Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +E ++L +A +DLGTK IG+A+SD R A P + R K T A LL Sbjct: 1 MICENVETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + ++GLP NM+GSEGPR STRAF N+ +R +P FWDERL+TV+A++ Sbjct: 61 KIVQDRALVGLVLGLPRNMDGSEGPRAQSTRAFARNL-ERLTPLPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L++ + SRK+R + +D +AA ILQ LDR+ FL ++ Sbjct: 120 ALLEGDTSRKRRAEVIDQVAAGYILQGALDRLRFLGRTE 158 >gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107] gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10] gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10] gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107] Length = 157 Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M E ++ PIA +D G K +G+AISD A P + RKK T A L Sbjct: 1 MIYDDFETFAAAVPNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A ++GLP NM+G+EGPR TRAF N+ +P FWDERL+TV+A++ Sbjct: 61 EIVKDREVGALLLGLPRNMDGTEGPRCQKTRAFARNLAK-LTELPIGFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D +AA+ ILQ LDR+ +++ Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIKAG 157 >gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 157 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE+ L P + +A +DLGTK IG+A+SD A P + RKK TQ A L+ Sbjct: 1 MIHEQIEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + IA ++GLP NM+GSEGPR STRAF N + P FWDERL+TV+A++ Sbjct: 61 EILRQREIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SR+KR + +D +AA+ ILQ VLDR+ L S+ Sbjct: 120 ALLEADTSRRKRAELIDHVAASYILQGVLDRLRNLRSA 157 >gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614] gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614] Length = 162 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 L +ED V ++ + +DLGTK IGLA+SD G A P + RKK T A +LL+ Sbjct: 5 PALSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLT 64 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + + ++GLPLNM+GSEGPR +TRAFV N+ +K +P +WDERL+T + + Sbjct: 65 ICAKQGVGGIVLGLPLNMDGSEGPRAQATRAFVRNL-SQKTDLPITYWDERLSTAAVTRT 123 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++ + SR KR VD +AAA ILQ LDR+ F+ G Sbjct: 124 LLEADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162 >gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83] gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83] Length = 165 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 88/159 (55%), Positives = 115/159 (72%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 SF E IAAFIIGLP+NM+GSEGPR +TRAFV M K +PFV WDERL+TV+A++ Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTM-GEKTDIPFVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 +LI+M+VSRKKR +++DS AA+ ILQ LDR++ L Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158 >gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 163 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+ Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11] gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11] Length = 157 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M E ++ PIA +D G K +G+AISD A P + RKK T A +L Sbjct: 1 MIYDDFEAFAAAVPSLSPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I A ++GLP NM+G+EGPR TRAF N+ + +P FWDERL+TV+A++ Sbjct: 61 EIVKAREIGALLLGLPRNMDGTEGPRCQKTRAFARNL-SQLTDLPIGFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D +AA+ ILQ LDR+ L++ Sbjct: 120 ALLEADTSRKRRSEVIDHVAASYILQGALDRMRHLKTG 157 >gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003] gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003] Length = 159 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++D +L +A +DLGTK IG+A+SD R A P + R+K + +L+ Sbjct: 1 MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLM 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ Sbjct: 61 KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +++ ++SRK+R + VD +AA ILQ LDR++ L + G Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159 >gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 157 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ED +L + +D G K IG+A+SD A P + RKK T + LL I+ Sbjct: 6 FEDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIISG 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 +I I+GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++ Sbjct: 66 RDINGIILGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SRK+R + +D +AA+ ILQ LDR+ ++S Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157 >gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 154 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 E+ +L P Q + +DLG K IG+A+SD R A P + RKK + LL T Sbjct: 6 FEEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLLEIATD 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ L++ Sbjct: 66 REIGGIVLGLPRNMDGSEGPRCQSTRAFARNL-SQLTDIPIGFWDERLSTVAAKKALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + +RK+R Q +D +AA ILQ LDR+ FL Sbjct: 125 DTTRKRRGQVIDHVAAGYILQGALDRLRFL 154 >gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4] gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4] Length = 158 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR + R K T+ A LL Sbjct: 1 MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E +AAF+IGLP+NM+GS GPRV +TRAFV M ++ +PFV+WDERL+TV+A + Sbjct: 61 AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAEK-TDIPFVYWDERLSTVAATR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++M+VSR KR +++DS AA+ ILQ LDR+S L S+ Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157 >gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37] gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37] Length = 156 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE +L P Q + +DLGTK IG+A+SD R A P + RKK A L Sbjct: 1 MIHETIEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQ 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I I I+GLP NM+G+EGPR STRAF N P +WDERL+TV+A++ Sbjct: 61 ALIAGRRIGGLILGLPRNMDGTEGPRCQSTRAFARNFA-ALWDGPIGYWDERLSTVAAEK 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ + +RK+R + +D +AA+ ILQ LDR+ FL + Sbjct: 120 ALLEADTTRKRRAEVIDHVAASYILQGALDRLRFLGA 156 >gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv. viciae 3841] Length = 164 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K A LL Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR +++DS AA+ ILQ LDR+S L S G Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159 >gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84] gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84] Length = 164 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 91/155 (58%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L IEDL L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A LL Sbjct: 1 MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E +AAF+IGLP+NM+GS GPRV +TRAFV +M D+ +PFV+WDERL+TV+A++ Sbjct: 61 AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMADK-TALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L++M+VSR KR +++DS AA+ ILQ LDR+S L Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154 >gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1] gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1] Length = 160 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS++ IE+L K+ +P+A +DLGTK IG+AISD G FA PR +L RKK + A LL Sbjct: 1 MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++ EN I+GLP+NM+GSEGPR STRAFV N+ +PF FWDERL+TV+A++ Sbjct: 61 HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNL-QPLTKLPFAFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 LI+M+VSR KR Q++DS AAA ILQ LDR+ L + G Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159 >gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040] gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040] Length = 157 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ED +L + +D G K IG+A+SD A P + RKK T + LL I Sbjct: 6 FEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAG 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 +I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++ Sbjct: 66 RDINGILLGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SRK+R + +D +AA+ ILQ LDR+ + SS Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157 >gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 307] gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 307] Length = 162 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + D +L P P+A +DLGTK IG+A+SD G A P + R K AL L Sbjct: 1 MIFEDVIDFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + IA ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++ Sbjct: 61 EITSHRAIAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLTDLPITYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D++AA++ILQ +LDR+ +++ Sbjct: 120 ALLEADTSRKRRAEVIDNVAASIILQGMLDRLRNIKAQ 157 >gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius nubinhibens ISM] gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius nubinhibens ISM] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 E + L + +DLGTK +G+A+SD R A P + R+K T A L I Sbjct: 6 FESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQELIAA 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 ++ ++GLP NM+GSEGPR STRAF N + +P FWDERL+TV+A++ L++ Sbjct: 66 RSVVGVVLGLPRNMDGSEGPRCQSTRAFARNFA-QLTDLPIGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + SRK+R + +D +AA+ ILQ LDR+ + S Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157 >gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53] gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ED L + +A +DLGT IG+A+SD R A P + R+K T A L Sbjct: 1 MICATPEDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 T IA ++GLP NM+GSEGPR +TRAF N+ ++ +P FWDERL+TV+A++ Sbjct: 61 EITTHRMIAGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 +++ ++SRK+R +++D+IAA+ ILQ +LDR+ LE+ Sbjct: 120 AMLEADMSRKRRAERIDNIAASYILQGMLDRLRHLEARA 158 >gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3] gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3] Length = 154 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +E+ +L P +A +DLG K IG+A+SD R A P + RKK A LL Sbjct: 1 MICETVEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + IA ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ Sbjct: 61 AIVEQREIAGIVLGLPRNMDGSEGPRCQSTRAFARNL-SRLTEVAITFWDERLSTVAAEK 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L++ + +RK+R + +D +AAA ILQ LDR+ L Sbjct: 120 ALLEADTTRKRRSEVIDHVAAAYILQGALDRLRNL 154 >gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3] gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3] Length = 159 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K T+ A LL Sbjct: 1 MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E ++AFIIGLP+NM+GS GPR +TRAFV M K +PF+FWDERL+TV+A++ Sbjct: 61 AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +L++M+VSR KR +++DS AA+ ILQ LDR+S L + G Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159 >gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2] gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2] Length = 160 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59 MS+L IE+ +L + +A +D G K IG+A+SD R A P + R K T A L Sbjct: 1 MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 IT IA I+GLP NM+GSEGPR +TRAF N+ R +P FWDERL+TV+A Sbjct: 61 AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFARNL-SRLTPLPIGFWDERLSTVAAT 119 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + L++ + SRK+R + +D +AA ILQ VLDR++ + G Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160 >gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6] gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6] Length = 157 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE+ +++ +A +D G K IG+AISD A P + RKK T A L Sbjct: 1 MICETIEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I ++GLP NM+GSEGPR TRAF N+ ++ +P FWDERL+TV+A++ Sbjct: 61 EITKAREIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-EKLTELPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D +AA+ ILQ LDR+ ++ Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHMKDG 157 >gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides ATCC 17025] gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC 17025] Length = 160 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE+ + +L + + +DLGTK IG+A++D RR A P + R K T+ A L Sbjct: 1 MIHESIEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + ++GLP NM+GSEGPR STRAF N+ + + +P +WDERL+TV+A++ Sbjct: 61 AITAERGLVGIVLGLPRNMDGSEGPRAQSTRAFARNL-SQVLPLPIGYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 LI+ + SRK+R + +D +AA ILQ VLDR+ +L + Sbjct: 120 ALIEADTSRKRRAEVIDHVAAGYILQGVLDRLDWLGRER 158 >gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101] gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101] Length = 161 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I D +L P Q + +DLG K IG+A++D A P + RKK A L Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLT 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I I I+GLP NM+GSEGPR STRAF N D+ V +P FWDERL+TV+A++ Sbjct: 61 QIIADRRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEK 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++ + SRK+R + +D +AA+ ILQ VLDR+S L + G Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159 >gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii DFL-11] gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii DFL-11] Length = 161 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 1/154 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 L +ED + ++ + +DLGTK IGLA+SD GR A P + RKK T A +LL Sbjct: 5 PTLSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLK 64 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + + ++GLPLNM+G+EGPRV +TRAF N+ + +P FWDERL+T + + Sbjct: 65 ICNEQGVGGLVLGLPLNMDGTEGPRVQATRAFTRNLAPK-TDLPMTFWDERLSTAAVTRT 123 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L++ + SR KR + VD +AAA ILQ LDR+ F+ Sbjct: 124 LLEADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157 >gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 158 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I + ++ +A +DLGT IG+A+SD A P + RKK + A LL Sbjct: 1 MIFNDITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + ++GLP NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ Sbjct: 61 EIAKDRELGGLVLGLPYNMDGSEGPRCQSTRAFARNL-EKLTDLPISFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + +RK+R + +D +AA ILQ VLDR + L +S Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157 >gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae WSM419] gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419] Length = 165 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 86/159 (54%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR + R K A LL Sbjct: 1 MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +AAF+IGLP+NM+GSEGPR +TRAFV M +R +P V WDERL+TV+A++ Sbjct: 61 FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 +LI+M+VSRKKR ++DS AA+ ILQ LDR++ L Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALLARGA 158 >gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 238] gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter antarcticus 238] Length = 158 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + D +L P+A +DLGTK IG+A+ D G A P + R K A L Sbjct: 1 MIFEDVIDFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +A ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++ Sbjct: 61 EITAHREVAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLSDLPITYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D+IAA++ILQ +LDR+ ++++ Sbjct: 120 ALLEADTSRKRRAEVIDNIAASIILQGLLDRLRNIKAA 157 >gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58] gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 159 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K TQ A LL Sbjct: 1 MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +F E +AAF+IGLP+NM+GS GPR +TRAFV M K +PF++WDERL+TV+A++ Sbjct: 61 AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L++M+VSR KR +++DS AA+ ILQ LDR+S L + Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAA 158 >gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599] gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC 100599] Length = 138 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G K IG+A+SD A + R+ + L ++ I AF++GLP Sbjct: 3 RLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR +AF +++ + +P WDERLTT++A+++LI +VSR+KR +D Sbjct: 63 NMNGTIGPRAEMCQAFG-KLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVID 121 Query: 138 SIAAALILQEVLDRIS 153 +AA LILQ LD S Sbjct: 122 KMAATLILQGYLDAKS 137 >gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium KLH11] gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium KLH11] Length = 154 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ED +L P + +DLG K IG+A+SD R A P + RKK T + L+ +T Sbjct: 6 FEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLIEIVTD 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ L++ Sbjct: 66 REIGGIVLGLPRNMDGSEGPRCQSTRAFARNLT-RLTEVQIGFWDERLSTVAAEKALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + +RK+R Q +D +AA ILQ LDR+ FL Sbjct: 125 DTTRKRRGQVIDHVAAGYILQGALDRLRFL 154 >gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45] gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45] Length = 157 Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M D + +L P Q + +DLG K IG+A+SD + A P + RKK A L Sbjct: 1 MIFDDTADFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLA 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I I ++GLP NM+GSEGPR STRAF N DR +P +WDERL+TV+A++ Sbjct: 61 EIIAKRRIGGLVLGLPRNMDGSEGPRCQSTRAFARNF-DRLTPLPITYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ + +RK+R + +D +AA ILQ +LDR+ + Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGLLDRLQVMRR 156 >gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1] gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1] Length = 159 Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I +++ L P Q IA +DLGTK IG+A+SD G F++PR L R+K T A L+ Sbjct: 1 MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLPLNMNGS GPR +TR FV NM + +PFVFWDERL+T++A++ Sbjct: 61 KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR ++DS AAA ILQ L+RI L +G Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159 >gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597] gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597] Length = 161 Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +E+ +L P + IA +D G K IG+A+SD A P + R+K Q A L Sbjct: 1 MIHETVEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALS 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSA 118 + + I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A Sbjct: 61 ALLAARTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAA 120 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 ++ L++ + SR++R + +D +AA ILQ LDR+ L+ + Sbjct: 121 ERALLEADTSRRRRAEVIDHVAAGYILQGALDRLRHLKGA 160 >gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup] gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup] Length = 159 Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+ Sbjct: 1 MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLPLNMNGS G RV +TRAFV NM +PFVFWDERL+T++A++ Sbjct: 61 KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++MNVSR KR ++DS AAA ILQ L+RI +G Sbjct: 120 SLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159 >gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035] gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035] Length = 160 Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + I +L + I +DLGTK IG+A+SD A P + R K T A LL Sbjct: 1 MILEEIAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + I+GLP NM+GSEGPR STRAF N+ R VP +WDERL+TV+A++ Sbjct: 61 QIVAGREVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTEVPIGYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ + +RK+R+Q +D+IAAA ILQ VLDR+ + + Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156 >gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 138 Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D G +RIG+A+SD A + R+K + + + ++GLP Sbjct: 2 KIMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR AF ++ K+ +P WDERLTTVSAQ+ L+D +VSRKKR VD Sbjct: 62 NMNGTIGPRGEICMAFAEDL-RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA+LILQ LD S Sbjct: 121 KMAASLILQNYLDSKS 136 >gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter sphaeroides 2.4.1] gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides ATCC 17029] gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides WS8N] gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter sphaeroides 2.4.1] gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC 17029] gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides WS8N] Length = 160 Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L + Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIAAE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++ Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + SRK+R + +D +AA ILQ VLDR+ +L G Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159 >gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476] gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476] Length = 156 Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 83/157 (52%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+ Sbjct: 1 MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ +IGLPLNMNGS G RV +TRAFV NM +PFVFWDERL+T++A++ Sbjct: 61 KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++MNVSR KR +++DS AAA ILQ L+RI L S Sbjct: 120 SLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156 >gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36] gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36] Length = 161 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I D +L P Q + +DLG K IG+A+SD A P + RKK A L Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLS 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++ Sbjct: 61 EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SR++R + +D +AA ILQ VLDR+ +++ Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157 >gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides KD131] gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131] Length = 160 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L + Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIADE 65 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 + ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++ Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + SRK+R + +D +AA ILQ VLDR+ +L G Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159 >gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1] gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1] Length = 161 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I D +L P Q + +DLG K IG+A+SD A P + RKK A L Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLS 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++ Sbjct: 61 EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SR++R + +D +AA ILQ VLDR+ +++ Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157 >gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW] gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 188 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I + +L SL N + +DLG K IGLA+SDPG A P + R K TQ A EL Sbjct: 1 MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTV 116 + ++ A ++GLP+NM+G+EGPR S R F ++ R FWDERL+T Sbjct: 61 RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + ++++I +++RK+R + VD +AAA ILQ LDR+ +++ G Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164 >gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse] gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse] Length = 159 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I +++ L P Q IA +DLG K IG+A+SD G F++PR L RKK+T A L+ Sbjct: 1 MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLPLNMNGS GPR +TR FV+NM + +PFVFWDERL+T++A++ Sbjct: 61 QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR ++DS AAA ILQ L+RI L +G Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159 >gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516] gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516] Length = 157 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ED +L + + +DLGT+ IG+A+SD R A P + RKK A LL Sbjct: 1 MICDSAEDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I ++GLP NM+GSEGPR STR F N+ +R +P FWDERL+TV+A++ Sbjct: 61 AICEHRAITGIVLGLPRNMDGSEGPRCQSTRGFARNL-ERLTPLPIAFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 L++ + SR++R + +D +AA +ILQ +LDR+ L Sbjct: 120 ALLEADTSRRRRGEVIDHVAAGVILQGMLDRLRHLR 155 >gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum USDA 110] gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110] Length = 167 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+ Sbjct: 11 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 70 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L Sbjct: 71 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 129 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 I M+VSR KR + +D AA ILQ LDR++ L + G Sbjct: 130 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167 >gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase Length = 161 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+ Sbjct: 5 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L Sbjct: 65 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 I M+VSR KR + +D AA ILQ LDR++ L + G Sbjct: 124 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161 >gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2] gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2] Length = 158 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M E V ++ +A +DLGT IG+A+SD R A P + RKK A +LL Sbjct: 1 MICDTPETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 T + ++GLP NM+GSEGPR +TRAF N+ ++ +P FWDERL+TV+A++ Sbjct: 61 ELTTHRLVTGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++ + SRK+R + +D +AA ILQ +LDR++ L+++ Sbjct: 120 ALLEADTSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157 >gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217] gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217] Length = 160 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +L + I +DLGTK IG+A+SD A P + R K T+ A L Sbjct: 1 MIFEEIAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +T ++ I+GLP NM+GSEGPR STRAF N+ R P +WDERL+TV+A++ Sbjct: 61 DIMTGRDVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTDAPIGYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 L++ + +RK+R+Q +D+IAAA ILQ VLDR+S + + Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156 >gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-134-V-Col7a] gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-134-V-Col7a] Length = 140 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G++ IG+A SD A + R + L I+ + ++G+P Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T FV M + +P FWDERL+TV A++ LI +VSRKKR +D Sbjct: 62 NMNGTKGERAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVID 120 Query: 138 SIAAALILQEVLDRISFLES 157 +AA +ILQ LDR+ F +S Sbjct: 121 KMAAVVILQGYLDRLQFSKS 140 >gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149] gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149] Length = 163 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + D + +L P + + +DLGT+ IG+A+SD A P + R+K T A L+ Sbjct: 1 MILEDTADFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119 + + ++GLP NM+GSEGPR STRAF N+ +P FWDERL+TV+A+ Sbjct: 61 EIASERRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLEKTIGSDLPITFWDERLSTVAAE 120 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 + L++ + SRK+R + +D +AA ILQ LDRI + + + Sbjct: 121 RALLEADTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160 >gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs] gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs] Length = 139 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 73/134 (54%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G K IG+AISD A + R + + L I +I ++GLP NM Sbjct: 5 MGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ GP+ F + R V V WDERLTTV+A++ LI+ +VSRKKR + +D + Sbjct: 65 NGTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEVIDKM 124 Query: 140 AAALILQEVLDRIS 153 AA ILQ LD S Sbjct: 125 AAVYILQGYLDSAS 138 >gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum WSM2075] gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum WSM2075] Length = 168 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ IE L L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL Sbjct: 1 MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ Sbjct: 61 ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI+M+ SR KR K+DS AAA ILQ VLDR+ L +S Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157 >gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC 39073] gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC 39073] Length = 140 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+GTK IG+A+SDP A + R+ + L + + ++GLP Sbjct: 2 RIMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS GP+ + RAF ++ +V +P F+DERLTTV+A ++L++ ++SR++R Q +D Sbjct: 62 NMNGSLGPQAEAVRAFARHL-QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVID 120 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ LDR+ Sbjct: 121 QVAATYILQGYLDRL 135 >gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114] gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 163 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + D + +L + + +DLGT+ IG+A+SD A P + R+K T A L Sbjct: 1 MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLS 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119 + + ++GLP NM+GSEGPR STRAF N+ +P FWDERL+TV+A+ Sbjct: 61 DIVAQRRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAE 120 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 + L++ + SRK+R + +D +AAA ILQ LDRI + + + Sbjct: 121 RALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160 >gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. ORS278] gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278] Length = 161 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 IL + + + +DLGTK IG+A+SDP RR A + RK A LL+ Sbjct: 4 PILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + F++GLP+NM+GSEGPR STRAF N+ +P WDERL+T + ++ Sbjct: 64 ICAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAG-LTDLPIGLWDERLSTAAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR + +D+ AA ILQ LDR++ L S Sbjct: 123 LIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRS 159 >gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisA53] gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisA53] Length = 163 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 IL + + P + +DLGTK IG+A+SDP RR A ++RK T A LL+ Sbjct: 4 PILPLIEAAAQWPPTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 T ++GLP+NM+ SEGPR STRAF N+ R +P WDERL+T + ++ Sbjct: 64 LATERKAVGLVLGLPINMDASEGPRAQSTRAFARNLA-RLTELPIGLWDERLSTAAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 LI +VSR KR + +D AA ILQ LDR++ L S G Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLAVLNRSTG 161 >gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7] gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7] gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7] gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7] Length = 138 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+A+SDP A + RK EL + N+ + GLP Sbjct: 2 RILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F +I K+ +P WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD IS Sbjct: 121 KMAAIYILQGYLDSIS 136 >gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 136 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G + IG+A+SD A + RKK + + I ++ ++GLP NM Sbjct: 4 MGLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLPKNM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ GPR + F ++ R+ +P WDERLTTVSA + L++ +VSRKKR Q VD + Sbjct: 64 NGTIGPRGELCQEFAG-LLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVVDKM 122 Query: 140 AAALILQEVLDR 151 AAALILQ +D Sbjct: 123 AAALILQGYMDS 134 >gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-049-V-Sch6] gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica ACS-049-V-Sch6] Length = 140 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G++ IG+A SD A + R + L I+ + ++G+P Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T FV M + +P FWDERL+TV A++ LI +VSRKKR +D Sbjct: 62 NMNGTKGDRAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVID 120 Query: 138 SIAAALILQEVLDRISFLES 157 +AA +ILQ LDR+ F +S Sbjct: 121 KMAAVVILQGYLDRLQFSKS 140 >gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C] Length = 163 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++ Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 +L++M++SR KR ++DS AAA ILQ LDRI L+S+ Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157 >gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C str. JGS1495] gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C str. JGS1495] Length = 137 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G+K IG+A+SDP A + R T+ ++ + ++G+P Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 IAA ILQ LDRIS Sbjct: 121 KIAATYILQGYLDRIS 136 >gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506] gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506] Length = 165 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS++ IE+ ++LK +P+A +DLGTK IG+A+SD RFA+PR L RKK TQ A L Sbjct: 1 MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + ++A ++GLPLNM+GS GPR +T+AF N P + WDERL+TV+A++ Sbjct: 61 AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNYA-ALDERPILLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L+D+++SRKKR +++DS AAA+ILQ VLDR++ L G Sbjct: 120 NLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159 >gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium HTCC2150] gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium HTCC2150] Length = 156 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59 M+I+ + SLK PI ++D G K IG+A SD R A P + R K T A L Sbjct: 1 MAIIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERL 60 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 L + F++GLP NM+GSEG R TRAF N+ +R + FWDERL+TV+A+ Sbjct: 61 LELAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFARNL-ERLTEINIAFWDERLSTVAAE 119 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + LI+ + SR KR Q +D +AA ILQ LDR++ L Sbjct: 120 RALIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155 >gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498] Length = 163 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I +++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++ Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 +L++M++SR KR ++DS AAA ILQ LDRI L S+ Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157 >gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 168 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 81/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+ IE+L L + +A +DLG K IG+A+SD FAHPRP ++R+K + A LL Sbjct: 1 MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFV WDERL+TV+A++ Sbjct: 61 ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QMSDLPFVLWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 LI+M+ SR+KR K+DS AAA ILQ VLDR+ L +S Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHASA 158 >gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748] gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158 str. F0412] gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748] gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158 str. F0412] Length = 139 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I S+D+G++ IG+A SD A + R + + L I + ++G+P Sbjct: 2 RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D Sbjct: 62 NMNGTKGERAEKTEEFVEKM-KEVIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVID 120 Query: 138 SIAAALILQEVLDRISF 154 +AA +ILQ LDR+ F Sbjct: 121 KMAAVVILQGYLDRLQF 137 >gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5] gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5] Length = 204 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 1/158 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 IL + D P + +DLGTK IG+A+SDP RR A + RK T+ A ELL Sbjct: 46 PILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLK 105 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 A F++GLP+NM+GSEGPR STRAF N + WDERL+T + ++ Sbjct: 106 ISGERACAGFVLGLPINMDGSEGPRAQSTRAFARNFAK-LTELAIGLWDERLSTAAVERE 164 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L+ +VSR +R + +D AA ILQ LDR++ L Sbjct: 165 LLANDVSRARRAEVIDEHAAIFILQGALDRLTALRRQA 202 >gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13] gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 162 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR +++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157 >gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470] gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470] Length = 142 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 79/137 (57%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I S+D+G++ IG+A+SD A + + + L N+ F+IG+PL Sbjct: 2 RIMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T F + +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +D Sbjct: 62 NMNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVID 121 Query: 138 SIAAALILQEVLDRISF 154 +AA +IL+ L +SF Sbjct: 122 KMAAVVILEGYLQHLSF 138 >gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2] gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2] Length = 162 Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR +++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157 >gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330] gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365] gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445] gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC 23457] gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str. 513] gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str. 686] gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis M163/99/10] gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis B2/94] gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915] gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis M292/94/1] gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33] gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3 str. Ether] gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1] gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94] gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9] gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99] gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4 str. 40] gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513] gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99] gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1] gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330] gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365] gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445] gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915] gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4 str. 40] gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99] gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513] gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9] gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1] gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28] gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis M5-90] Length = 162 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR ++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157 >gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 165 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ IE++ L+P + IA +DLGTK IGLA+SD G FAHPRP + R K + A LL Sbjct: 1 MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR +++DS AAA ILQ LDR+ + S Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157 >gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans DS-1] gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans DS-1] Length = 182 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 + +L L N+ + +DLG+K IGLA+SD A P + R K T A L++ Sbjct: 33 PLAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIALAK 92 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 + A + GLPLNM+G+EGPR STRAF+ N+ ++ +P FWDERL+T++ + L+D Sbjct: 93 EHDAGALVFGLPLNMDGTEGPRCQSTRAFIRNL-EKLTDLPIAFWDERLSTMAVTRTLLD 151 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SR +R + VD +AAA ILQ LDR+ L Sbjct: 152 ADASRARRAELVDKMAAAYILQGALDRLRKL 182 >gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10] gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10] Length = 138 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75 I +D+GTK IG+A+SDP A RKK + ++ + E ++GL Sbjct: 2 KIIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP +AF ++ +P + WDERLTT +A++ LI +VSRKKR Sbjct: 62 PKNMNGTIGPSGELCQAFAESL-KEATGLPVILWDERLTTAAAEKTLISADVSRKKRKNV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ LD S Sbjct: 121 IDKMAAVFILQGYLDSRS 138 >gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1] gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1] Length = 161 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 IL + + + +DLGTK IG+A+SDP RR A + RK A LL+ Sbjct: 4 PILPLIEAASRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + + F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ Sbjct: 64 ISSERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTDLPIGLWDERLSTAAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR +R + +D+ AA ILQ LDR++ L S Sbjct: 123 LIGMDVSRARRAEVIDTHAAIFILQGALDRLATLRRS 159 >gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008] gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745] gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008] gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745] Length = 139 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I S+D+G++ IG+A SD A + R + + L I+ + ++G+P Sbjct: 2 RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D Sbjct: 62 NMNGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVID 120 Query: 138 SIAAALILQEVLDRISF 154 +AA +ILQ LDR+ F Sbjct: 121 KMAAVVILQGYLDRLQF 137 >gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase Length = 160 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +++ ++ P + + +DLGTK IG+A+SD A + RKK A L Sbjct: 1 MIFETLDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALA 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSA 118 I + I+GLP NM+GSEGPR +TRAF N+ R ++ FWDERL+TV+A Sbjct: 61 GLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAA 120 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 ++ LI + SRK+R + +D++AA+ ILQ LDR+ L + Sbjct: 121 ERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159 >gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium acetobutylicum EA 2018] Length = 135 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID+G K IG+A+SDP A + RK + EL + + GLP Sbjct: 2 RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD Sbjct: 62 NMNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVD 120 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 121 KVAATYILQGYLDSI 135 >gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM 555] gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016] gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM 555] gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 137 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+A+SDP A + RK + EL + + + GLP Sbjct: 2 RILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F N+I+ + +P WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLKFC-NIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LDRIS Sbjct: 121 KMAATYILQGYLDRIS 136 >gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC 17100] gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC 17100] Length = 156 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 103/152 (67%), Gaps = 1/152 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 ++ + DL+ LK ++ + +D+GTK +GLA+SD R+ A P + R K T A++LL+ Sbjct: 5 LVPLPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVKLLAH 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + + ++GLP+N++G+EGPR STRAFV ++ +P FWDERL+T +A+++L Sbjct: 65 CKAQGVGGLVVGLPVNLDGTEGPRAQSTRAFVRSL-GALTDMPMAFWDERLSTAAAERVL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 ++ + SRK+R + +D +AAA ILQ LDR+++ Sbjct: 124 LEADASRKRRAEVIDKMAAAYILQGALDRVNY 155 >gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 139 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+AISD A + R + + I + I+GLP Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMNG+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + + Sbjct: 62 NMNGTLGPQGQKVMRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LD Sbjct: 121 DKLAAVLILQNYLDS 135 >gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814] gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814] Length = 146 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SDP A + RK K+ +T + + I + ++G Sbjct: 4 RIMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MN G R + AF M+ R+ + V WDERLTTV A++ LI+ V R+ R + Sbjct: 64 LPKHMNNDIGDRAEKSMAFGE-MLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 122 Query: 135 KVDSIAAALILQEVLDRISF 154 +D IAA ILQ LD ++ Sbjct: 123 YIDKIAAVFILQGYLDSLAH 142 >gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73] gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73] Length = 164 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A +IGLP+NM+GS GPRV +T+ FV NM +PFVFWDERL+T +A++ Sbjct: 61 KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNMA-MYTKIPFVFWDERLSTTAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L+++++SR KR ++DS AAA ILQ LDRI L S+ Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157 >gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium acetobutylicum ATCC 824] gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium acetobutylicum ATCC 824] Length = 135 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID+G K IG+A+SDP A + RK + EL + + GLP Sbjct: 2 RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD Sbjct: 62 NMNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVD 120 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ L+ I Sbjct: 121 KVAATYILQGYLNSI 135 >gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B] gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans 743B] gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B] Length = 135 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G K IG+A+SDP A + RK + ++++ + ++GLP Sbjct: 2 RVLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ AFV + + + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVMAFVEKL-KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVD 120 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 121 KVAATYILQGYLDSI 135 >gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14] gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14] Length = 168 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 S+L + + + +DLGTK IG+A+SDP RR A L RK T A LL+ Sbjct: 9 SVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLA 68 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 N A F++GLP+NM+GSEGPR STRAF N+ R + WDERL+TV+ ++ Sbjct: 69 IAGERNAAGFVLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERE 127 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M++SR KR + +D AA ILQ LDR++ L + Sbjct: 128 LIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 164 >gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1] gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1] Length = 175 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G Sbjct: 37 RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 96 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R Sbjct: 97 YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 155 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AAALILQ LD Sbjct: 156 VIDKVAAALILQGYLDSQR 174 >gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens str. 13] gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens ATCC 13124] gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens SM101] gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E str. JGS1987] gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B str. ATCC 3626] gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens CPE str. F4969] gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens NCTC 8239] gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D str. JGS1721] gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens ATCC 13124] gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens SM101] gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E str. JGS1987] gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B str. ATCC 3626] gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens CPE str. F4969] gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D str. JGS1721] gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens NCTC 8239] Length = 137 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G+K IG+A+SDP A + R T+ ++ + + G+P Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 IAA ILQ LDRIS Sbjct: 121 KIAATYILQGYLDRIS 136 >gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571] gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571] Length = 185 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 ++ + ++ +L + +DLGTK IG+A DP RR A + R K TQ A L+ Sbjct: 31 TVGPLAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMV 90 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + AF++GLPLNM+GSEGPRV ++RAF N R +P FWDERL+TV+ ++ Sbjct: 91 LASERKAVAFVLGLPLNMDGSEGPRVQASRAFARNFA-RLSGLPIAFWDERLSTVAVERA 149 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 LI +VSR KR +D AAA ILQ +D ++ Sbjct: 150 LISADVSRAKRANVIDQHAAAFILQGAIDFLN 181 >gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase Length = 163 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 S+L + + + +DLGTK IG+A+SDP RR A L RK T A LL+ Sbjct: 4 SVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 N A F++GLP+NM+GSEGPR STRAF N+ R + WDERL+TV+ ++ Sbjct: 64 IAGERNAAGFVLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M++SR KR + +D AA ILQ LDR++ L + Sbjct: 123 LIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 159 >gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255] gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255] Length = 156 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 + L + + +DLGTK IG+A+SD A PR + RKK L + + + Sbjct: 9 EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+GLP+NM+GSEGPR +TRAF N+ R +P FWDERL++V+A++ +++ ++ Sbjct: 69 TGGIILGLPMNMDGSEGPRCQATRAFARNLSSR-CDIPITFWDERLSSVAAERAMLEADM 127 Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152 SR KR +D +AA+ ILQ LDRI Sbjct: 128 SRAKRADNIDHVAASFILQGALDRI 152 >gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3] Length = 163 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ A I+GLP+NMNGS GPRV +T+ FV NM +PF+FWDERL+T++A++ Sbjct: 61 EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNMAT-YTKIPFIFWDERLSTIAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 ++MN+SR KR ++DS AAA ILQ LDRI L+S+ Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157 >gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense MSR-1] Length = 163 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL I +L +L + + +DLGTK IGLA+SD A P + R K T+ A L Sbjct: 1 MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A ++GLP+ M+G+EG R STRAF N++ + +P VFWDERL+T + + Sbjct: 61 AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLGLR-DLPIVFWDERLSTAAVTR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L++ + SR +R + VD +AAA ILQ LD Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALD 149 >gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9] gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9] Length = 139 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+AISD A + R + + I + I+GLP Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + + Sbjct: 62 NMNGTLGPQGQKVVRFVEHL-KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LD Sbjct: 121 DKLAAVLILQNYLDS 135 >gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1] gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1] gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 162 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FA+PRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR ++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157 >gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1 str. 16M] gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840] gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M] gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella melitensis bv. 1 str. 16M] gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840] gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M] gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 162 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+ ++ Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR ++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157 >gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1 str. 9-941] gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis biovar Abortus 2308] gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19] gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6 str. 870] gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3 str. Tulya] gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4 str. 292] gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9 str. C68] gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC 8038] gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870] gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292] gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str. 86/8/59] gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str. Tulya] gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196] gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1 str. 9-941] gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold containing [Brucella melitensis biovar Abortus 2308] gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19] gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC 8038] gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292] gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str. 86/8/59] gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870] gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str. Tulya] gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196] Length = 162 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR ++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157 >gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW 200] gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW 200] Length = 139 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+AISD A + R + + I + I+GLP Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + + Sbjct: 62 NMNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LD Sbjct: 121 DKLAAVLILQNYLDS 135 >gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275] gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275] Length = 140 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 I +D+G K IG+A+SD A + R E+ I + + + GLP Sbjct: 4 GRIMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP+ + F +I + + FWDERLTTV+A++ LI +VSRKKR + Sbjct: 64 KNMNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVI 122 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 123 DMMAAVLILQGYLD 136 >gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Magnetospirillum magnetotacticum MS-1] Length = 159 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 96/153 (62%), Gaps = 1/153 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K T+ A +LL Sbjct: 5 MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +++ ++GLP+ M+G EGPR S R+F N+ + +P +WDERL+T + + Sbjct: 65 AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 123 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 L++ + SRK+R + VD +AAA ILQ +LD S Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156 >gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae DFL 12] gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12] Length = 163 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + + + + +DLGT IG+A+SD A P + RKK A L Sbjct: 3 MIFDDLAAFRAVVPAGRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLE 62 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + ++ I+GLP NM+GSEGPR STRAF N R+ +P FWDERL+TV+A++ Sbjct: 63 ALMDARDVGGLILGLPRNMDGSEGPRAQSTRAFARNFTARRP-IPIAFWDERLSTVAAER 121 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L++ + SR +R + +D +AA+ ILQ LDR + Sbjct: 122 ALLEADTSRARRAEVIDHVAASYILQGALDRFGHMRREA 160 >gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 135 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+A+SDP A + RK V + EL + I GLP Sbjct: 2 RILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 62 NMNGTVGEQGEKVIEFC-DILKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 121 KMAATYILQGYLDSI 135 >gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum Ice1] gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum Ice1] Length = 149 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+A+SD A + R ++ L + T + + GLP Sbjct: 2 RIMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR R F +++++K+ +P +WDERLTTV+AQ+ LI ++SR KR Q VD Sbjct: 62 NMNGTYGPRAEGIRKFG-SLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVVD 120 Query: 138 SIAAALILQEVLDRISFLESSK 159 +AA LILQ +D + L + + Sbjct: 121 KLAAVLILQNYMDAKAHLAAKE 142 >gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27] gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44] gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44] gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27] Length = 136 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G++ IG+A SD A + R + + L I+ + ++G+P NM Sbjct: 1 MSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D + Sbjct: 61 NGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKM 119 Query: 140 AAALILQEVLDRISF 154 AA +ILQ LDR+ F Sbjct: 120 AAVVILQGYLDRLQF 134 >gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5] gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5] Length = 160 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 IL + + + +DLGTK IG+A+SDP R+ A + R T A +L+ Sbjct: 4 PILPLIEAAAHWPARGALLGLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + F++GLPLNM+GSEGPR STRAF N R +P WDERL+T + ++ Sbjct: 64 LAAERSACGFVLGLPLNMDGSEGPRAQSTRAFARNFA-RLTELPIGLWDERLSTAAVERA 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI +VSR KR + +D AA ILQ LDR+ L + Sbjct: 123 LIANDVSRAKRAKIIDEHAAIYILQGALDRLVALNRA 159 >gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10] gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10] Length = 137 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D G +RIG+AISD A + R++ + + + + ++GL Sbjct: 1 MKKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR F + + + + +P WDERL+TVSA++ L++ +VSRKKR Q Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AA+LILQ LD Sbjct: 120 VDKMAASLILQNYLDSKR 137 >gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 150 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 N I +D G+K +G+A+ DP A + RK K+ QT + + I I + Sbjct: 2 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMN + G R T F ++ +R+ +P V WDERLTTV+A ++LI+ V R+ R Sbjct: 62 LGYPKNMNNTLGERAVKTEEFKTSL-ERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120 Query: 133 IQKVDSIAAALILQEVLDRIS 153 + VD IAAA+ILQ LD +S Sbjct: 121 KESVDQIAAAMILQGYLDSLS 141 >gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing bacterium SS3/4] Length = 144 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SD A + RK K+ +T + I + ++G Sbjct: 2 RILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NM+ +EG RV T+AF M++R+ +P +WDERLTTV+A+QIL++ V R+ R Sbjct: 62 LPKNMDNTEGERVEKTKAFGE-MLERRTGLPVHYWDERLTTVAAEQILMESGVRRENRKA 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 121 VIDKVAAGLILQGYLD 136 >gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT] gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT] Length = 135 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G + IG+A+SDP A + RK V + EL + I GLP Sbjct: 2 RVLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F ++ ++ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 62 NMNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ LD I Sbjct: 121 KMAATYILQGYLDSI 135 >gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188] gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188] Length = 165 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ IE++ L+ Q IA +DLGTK IGLA+SD G FAHPRP + R K + A LL Sbjct: 1 MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++ Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 LI M+VSR KR ++DS AA+ ILQ LDR+ + S Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRSA 158 >gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 151 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 4/144 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+AISDP A + RK K+ +T + + + + ++G Sbjct: 2 RIMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R + Sbjct: 62 FPKNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKK 120 Query: 135 KVDSIAAALILQEVLDRISFLESS 158 VD IAA ILQ LD + F + S Sbjct: 121 YVDKIAAVFILQGYLDSVYFRQKS 144 >gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453] gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453] Length = 137 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D G +RIG+AISD A + R++ + + + + + ++GL Sbjct: 1 MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR F + + + + +P WDERL+TVSA++ L++ +VSRKKR Q Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AA+LILQ LD Sbjct: 120 VDKMAASLILQNYLDSKR 137 >gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2] gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2] Length = 160 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + + + +DLGTK IG+A+SDP RR A + RK T A LL+ Sbjct: 5 ILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLAL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 N F++GLPLNM+GSEGPRV STRAF N R +P WDERL+T + ++ L Sbjct: 65 AAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNFA-RLTELPIGLWDERLSTAAVEREL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 I +VSR KR + +D AA ILQ LDR++ L + Sbjct: 124 IANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRA 159 >gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM 16795] gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM 16795] Length = 141 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G K IG+A+SD A + R+ + EL + I + + GL Sbjct: 3 DGRIMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP+ +I + + FWDERLTTV+A++ LI+ +VSRKKR + Sbjct: 63 PKNMNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKV 121 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD S Sbjct: 122 IDMLAAVIILQGYLDSKS 139 >gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13] Length = 138 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISD A + + + L I ++GL Sbjct: 2 RILGLDVGSKTVGVAISDEMGWTAQGLETIKIDEAIKNLGFKRLKQIIAEYKPEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNGS GPR +++ + M+ K +P ++WDERL+TV+A++IL+ +VSRKKR Q Sbjct: 62 PKNMNGSIGPRGEASKHYGE-MLTAKTGLPVIYWDERLSTVAAERILLSADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGYLDS 136 >gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168] gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168] Length = 140 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D G +RIG+AISD A + ++RK + + I + I+G+P Sbjct: 2 RIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS GPR TR F+ + + + + P WDERL+TV A+++LI+ +VSRKKR +D Sbjct: 62 NMDGSLGPRAEKTRDFI-DFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVID 120 Query: 138 SIAAALILQEVLDRISFLE 156 +AA++ILQ L+ + L Sbjct: 121 KVAASIILQGYLNYQNKLH 139 >gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM 574] gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM 574] Length = 140 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLP 76 + +D+G K IG+A+SDP A + R + + L + + ++GLP Sbjct: 2 RVMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP+ AF+ + +R + +P WDERL+TV+A++ L++ +VSR KR + + Sbjct: 62 KNMNGTLGPQGEKVLAFIERLKER-INLPVKTWDERLSTVAAERALLEADVSRSKRKKVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AAA+ILQ LD Sbjct: 121 DKMAAAVILQGYLDS 135 >gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5] gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5] Length = 137 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D G +RIG+AISD A + R++ + + + + ++GL Sbjct: 1 MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR F + + + + +P WDERL+TVSA++ L++ +VSRKKR Q Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AA+LILQ LD Sbjct: 120 VDKMAASLILQNYLDSKR 137 >gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile QCD-23m63] gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP08] gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP07] gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP08] gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Clostridium difficile NAP07] Length = 141 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G K IG+A+SD A + R + EL + I + + + GL Sbjct: 3 DGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR + Sbjct: 63 PKNMNGTLGPQGEKVIKFCE-LVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDMLAAVIILQGYLD 136 >gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC BAA-613] gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC BAA-613] Length = 171 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72 N I +D G+K +G+A+ DP A + R K+ QT + I I + Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMN + G R T+ F + +R+ + + WDERLTTV+A+++LI+ V R+ R Sbjct: 90 LGYPKNMNNTVGERGEKTQEFKAAL-ERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148 Query: 133 IQKVDSIAAALILQEVLDRISF 154 + VD IAAA+ILQ LD + + Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170 >gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2] gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2] Length = 165 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + + P + +DLGTK IG+A+SDP RR A + RK T+ A ELL Sbjct: 10 ILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAELLRI 69 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++ L Sbjct: 70 AGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAVEREL 128 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 I +VSR +R + +D AA ILQ LDR++ L Sbjct: 129 IANDVSRARRAEVIDEHAAIFILQGALDRLAALSRQ 164 >gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii Rt8.B1] gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii Rt8.B1] Length = 139 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+AISD A + R + + I + I+GLP Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NM+G+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + + Sbjct: 62 NMSGTLGPQGQKVVRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LD Sbjct: 121 DKLAAVLILQNYLDS 135 >gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 138 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G+K IG+AISDP A + R K Q E+ ++ +IGLP Sbjct: 2 RILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G +I + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGESGERVLELSE-IIKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKIVD 120 Query: 138 SIAAALILQEVLDRISF 154 IAA ILQ LDR+S Sbjct: 121 KIAATYILQGYLDRLSM 137 >gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510] gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510] Length = 178 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 5/156 (3%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 I +EDL L NQ + +D+GTK +GLA++DPG A P L R K TQ A EL Sbjct: 2 IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSA 118 I I ++GLPLNM+GSEGPR S RAF +N+++R + FWDERL+T + Sbjct: 62 IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121 Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++ +I + +++RK+R + VD +AAA ILQ LD ++ Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLA 157 >gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630] gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile QCD-66c26] gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP 107932] gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile QCD-63q42] gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC 43255] gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile QCD-76w55] gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile QCD-97b34] gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile QCD-37x79] gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196] gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291] gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile QCD-32g58] gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile] gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196] gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291] Length = 141 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G K IG+A+SD A + R + EL + I + + + GL Sbjct: 3 DGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR + Sbjct: 63 PKNMNGTLGPQGEKVIKFCE-LVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKV 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 IDMLAAVIILQGYLD 136 >gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 4b H7858] gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459] gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL J1-175] gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes serotype 4b str. F2365] gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 4b H7858] gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes 1816] Length = 138 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + + + + ++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKLAAVMILQSYLDTTN 138 >gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes EGD-e] gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland 1988] gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL R2-561] gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes 10403S] gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes J0161] gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL F2-515] gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120] gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e] gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL F2-208] gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120] Length = 138 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + + + + ++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKLAAVMILQSYLDTTN 138 >gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681] gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681] Length = 138 Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D G +RIG+A+SD A + R+ ++ + + + ++GLP Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR F + + + +P WDERLTT SA++ L++ +VSRKKR Q VD Sbjct: 62 NMNGTVGPRGEICIEFANRL-KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA+LILQ LD S Sbjct: 121 KLAASLILQNYLDAHS 136 >gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 139 Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+AISD A + R + + I + I+GLP Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + + Sbjct: 62 NMNGTLGPQGQKVVRFVEHL-KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LD Sbjct: 121 DKLAAILILQNYLDS 135 >gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 140 Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT---QTALELLSFITTENIAAFIIG 74 + +D G+K +G+AISDP A + RK+ QT + ++ ++ ++G Sbjct: 2 RVLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + F M++R+ + + WDERLTTV A + L++ +V R+ R Q Sbjct: 62 YPKNMNNTIGERAQKSLEF-KEMLERRTGLEVIMWDERLTTVEANRTLMEASVRRENRKQ 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD +S Sbjct: 121 YLDQLAAVFILQGYLDSLS 139 >gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus YK9] gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus YK9] Length = 138 Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D G + IG+A+SD A + R+ E+ + + ++GLP Sbjct: 2 RIMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS GPR AF + +K+ +P WDERLTTVSA++ L++ +VSRKKR VD Sbjct: 62 NMNGSVGPRGEICIAFAEEL-QQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD + Sbjct: 121 KLAATFILQNYLDSKA 136 >gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC 35185] gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185] gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC 35185] gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185] Length = 149 Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 73/139 (52%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + ++D+G + IG+A SD A + RK + L + FI+GL Sbjct: 2 RKRVLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG++G R R F + + VFWDERL+TV+A++ LI +VSR KR + Sbjct: 62 PKNMNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKV 121 Query: 136 VDSIAAALILQEVLDRISF 154 +D +AA ILQ LD + Sbjct: 122 IDKMAAVFILQGYLDNLGM 140 >gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 140 Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +DLG K IG+AISDP A + R + +L + +IGL Sbjct: 1 MKRILGLDLGQKTIGVAISDPLGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP AF +++ + + FWDERLTTV+A + +++ ++SR KR + Sbjct: 61 PKNMNGTIGPSGEIAMAFG-KLLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKI 119 Query: 136 VDSIAAALILQEVLDRIS 153 VD +A+ ILQ LD IS Sbjct: 120 VDKVASTYILQGYLDMIS 137 >gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf. saccharolyticum K10] Length = 140 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G Sbjct: 2 RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R Sbjct: 62 YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AAALILQ LD Sbjct: 121 VIDKVAAALILQGYLDSQR 139 >gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa SC2] gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa SC2] Length = 138 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D G +RIG+A+SD A + R+ ++ + + I ++GLP Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR F + + + +P WDERLTT SA++ L++ +VSRKKR Q VD Sbjct: 62 NMNGTVGPRGEICIEFANRL-KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA+LILQ LD S Sbjct: 121 KLAASLILQNYLDAHS 136 >gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506] gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506] Length = 160 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + + L + +DLGTK IG+A SDP RR A + RK+ T A +LS Sbjct: 5 ILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGRVLSL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 ++GLP+NM+GSEGPR ++RAF N+ R +P + WDERL+T + ++ + Sbjct: 65 AAARGAVGLVLGLPVNMDGSEGPRAQASRAFARNL-SRLTELPIMLWDERLSTAAVERDM 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 I ++SR +R + VD AAA ILQ LDR+ F+ + Sbjct: 124 IATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160 >gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase Length = 155 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL Sbjct: 1 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + ++GLP+ M+G EGPR S R+F N+ + +P +WDERL+T + + Sbjct: 61 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 L++ + SRK+R + VD +AAA ILQ +LD S Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 152 >gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua Clip11262] gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262] gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378] gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023] Length = 138 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + + + + ++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKLAAVMILQSYLDTTN 138 >gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens QYMF] gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens QYMF] Length = 138 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+AISD A + R + + L I + ++GLP Sbjct: 3 RIIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ FV + +++ + V WDERL+TV+A++ LI +VSRKKR Q +D Sbjct: 63 NMNGTIGPQGEKVLLFVERL-EKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQVID 121 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD IS Sbjct: 122 KLAAVHILQGYLDSIS 137 >gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596] gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596] Length = 138 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + + + + ++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKLAAVMILQSYLDTTN 138 >gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL N1-067] gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL S4-171] Length = 138 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + + + + ++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKLAAVMILQSYLDTTN 138 >gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 135 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+A+SDP A + RK++ + E+ I I GLP Sbjct: 2 RILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 62 NMNGTIGEQGEKVLEFC-DVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRI 152 IAA ILQ LD I Sbjct: 121 KIAATYILQGYLDSI 135 >gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC 14579] gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264] gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185] gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15] gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4] gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24] gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550] gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264] gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550] gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24] gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4] gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15] gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185] gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 137 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LDR Sbjct: 121 IDKMAAVVILQGFLDR 136 >gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM 2522] gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM 2522] Length = 142 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGL 75 + +D+GT IG+AISD A + R + Q L I ++++ ++GL Sbjct: 2 KVLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP +AF + +R + WDERLTTV+A+++L+ +VSRKKR + Sbjct: 62 PKNMNGTIGPSGELCQAFAEKLKER-TNLKVELWDERLTTVAAEKMLVSADVSRKKRKKV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LDR Sbjct: 121 IDKMAAVMILQGYLDR 136 >gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3] gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3] Length = 159 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L + DL + P+ P +DLG K IG+A+SD R A P + + K T A +L Sbjct: 1 MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + ++A +IGLP NM+G+EGPR S RAF N+ +R V FWDERL+T + ++ Sbjct: 61 KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFARNL-ERLRPVNIAFWDERLSTSAVER 119 Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRIS 153 LI+ ++++RK+R Q VD AAA ILQ LDR+ Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRVR 153 >gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 140 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 1/138 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 I +D+G IG+A+SD A + R+ + + I +N+ + GLP Sbjct: 4 GRIMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP+ F +I + + FWDERLTTVSA+++LI +VSRK R + + Sbjct: 64 KNMNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVI 122 Query: 137 DSIAAALILQEVLDRISF 154 D +AA LILQ LD F Sbjct: 123 DKLAAVLILQNYLDFKKF 140 >gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp. X514] gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus CCSD1] gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561] gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513] gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514] gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus CCSD1] gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561] gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513] Length = 139 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+AISD A + R + + I + I+GLP Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 N+NG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + + Sbjct: 62 NLNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LD Sbjct: 121 DKLAAVLILQNYLDS 135 >gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum AMB-1] gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum AMB-1] Length = 159 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL Sbjct: 5 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + ++GLP+ M+G EGPR S R+F N+ + +P +WDERL+T + + Sbjct: 65 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 123 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 L++ + SRK+R + VD +AAA ILQ +LD S Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156 >gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1] gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1] Length = 145 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFI 72 + I +D GTK +G+A+SD A + + L I + + Sbjct: 4 RHMRILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIV 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMNG+ GPR +T+ F + + +P V WDERL+T++A+++LI +VSRKKR Sbjct: 64 VGFPKNMNGTIGPRGEATQRFAEQ-VKQTFSLPVVLWDERLSTMAAERMLIAADVSRKKR 122 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA +ILQ LD Sbjct: 123 KKVIDKMAAVMILQSYLD 140 >gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus G9241] gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134] gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407] gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676] gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2] gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W] gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876] gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis BMB171] gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus G9241] gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134] gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876] gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W] gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2] gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676] gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407] gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis BMB171] gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 137 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis ZC1] gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis ZC1] Length = 138 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SD A + + + + I F++G Sbjct: 2 RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q Sbjct: 62 PKNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKMAAVMILQGYLDSKN 138 >gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus weihenstephanensis KBAB4] gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048] gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271] gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603] gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196] gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621] gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3] gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis KBAB4] gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3] gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621] gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196] gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603] gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271] gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048] Length = 137 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+A+SD A + ++ + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRN-LLQLEVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82] gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82] gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis M50/1] Length = 144 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SD A + R+ K+ QT + + I + ++G Sbjct: 2 RILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R + Sbjct: 62 YPKNMNNTEGERCEKTKEF-QEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKK 120 Query: 135 KVDSIAAALILQEVLDRISF 154 VD IAA ILQ LD S Sbjct: 121 YVDEIAAVFILQGYLDYRSM 140 >gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA] Length = 148 Score = 183 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 4/142 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76 +D G+K +G+AISDP A + RK K+ +T + + + + ++G P Sbjct: 1 MGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R + V Sbjct: 61 KNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYV 119 Query: 137 DSIAAALILQEVLDRISFLESS 158 D IAA ILQ LD + F + S Sbjct: 120 DKIAAVFILQGYLDSVYFRQKS 141 >gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925] gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925] Length = 135 Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+A+SDP A + RK++ + E+ I I GLP Sbjct: 2 RILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F + D+ + +P WDERLTTV+A + +++ N+SR KR + VD Sbjct: 62 NMNGTIGEQGEKVLEFCDVLKDK-LDIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRI 152 IAA ILQ LD I Sbjct: 121 KIAATYILQGYLDSI 135 >gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus 1_2_62CV] gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus 1_2_62CV] Length = 139 Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + +K L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAK-IEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50] gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50] Length = 165 Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAF 71 N I +D GTK +G+A+SD A P + RK K+ QT + S I Sbjct: 19 KNMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERI 78 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G P NMN + G R +T F ++ +R+ + + WDERL+TV A++IL+D V R+ Sbjct: 79 VLGYPKNMNNTIGERAEATEQFKEDL-ERRTGLEVILWDERLSTVEAERILMDTGVRREN 137 Query: 132 RIQKVDSIAAALILQEVLDRISF 154 R Q VD +AAA+ILQ LD + Sbjct: 138 RKQYVDKMAAAVILQNYLDSQAH 160 >gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis DSM 17678] gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis DSM 17678] Length = 138 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G IG+A+SD A + R L I + + GL Sbjct: 3 SGRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP+ F ++I ++ + FWDERLTTVSA+++LI+ +V RK R + Sbjct: 63 PKNMNGTIGPQAEKVIKFC-DLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKV 121 Query: 136 VDSIAAALILQEVLDRI 152 +D +AA LILQ LD I Sbjct: 122 IDKLAAVLILQGYLDSI 138 >gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756] gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756] Length = 156 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L IED +L P+ +D G K IG+A+SD R A P + + K ++ A L Sbjct: 1 MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + + Sbjct: 61 KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LI + +V+RK+R + VD +AA ILQ L+R+ L Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156 >gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum HLK1] gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum HLK1] Length = 156 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ + DL PN P+ +DLG K IG+A+SD R A P + + K T A L Sbjct: 1 MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLP+NM+G+EG R S RAF N++ + +P FWDER++T++ + Sbjct: 61 KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +L+ + +++R +R VD +AAA ILQ LDR+ L Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156 >gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758] gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758] Length = 143 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+A+SDP A + RK K+ +T + S T + F+IG Sbjct: 3 RIMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIG 62 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R F M+ R+ + V WDERLTTV A++ L++ V R+ R Q Sbjct: 63 FPKHMNNDIGERAEKALEFGE-MLKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRKQ 121 Query: 135 KVDSIAAALILQEVLDRISF 154 VD IAA ILQ LD + Sbjct: 122 YVDQIAAVFILQGYLDSLGM 141 >gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques L2-14] Length = 145 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 4/145 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 + +D GTK +G+AISDP A + RK K+ +T + I + ++G Sbjct: 2 RVMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R + F +M+ R+ + + WDERLTTV+A+Q LI+ V R+ R Q Sbjct: 62 FPKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRKQ 120 Query: 135 KVDSIAAALILQEVLDRISFLESSK 159 VD IAA ILQ LD I ++++ Sbjct: 121 YVDKIAAVFILQGYLDSIYMQKTAE 145 >gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum WAL-14163] gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum WAL-14673] gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum WAL-14163] gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum WAL-14673] Length = 163 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTAL 57 M+I + ++ +K + +D G+K G+A+SDP A + R+ K+ +T Sbjct: 1 MAICQL--VLLWVKQLMRVLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCA 58 Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 + I I ++G P NMN + G RV T AF M++R+ + + WDERLTT + Sbjct: 59 RIEELIREYQIETIVLGYPKNMNNTSGERVEKTLAF-KEMLERRTGLSVILWDERLTTTA 117 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 A+QILI+ V R+ R +D +AA+LILQ LD ++ Sbjct: 118 AEQILIESGVRRENRKAVIDKVAASLILQGYLDSLA 153 >gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97] gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187] gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1] gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26] gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97] gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187] gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1] gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26] Length = 137 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + ++ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LDR Sbjct: 121 IDKMAAVVILQGFLDR 136 >gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes 220] gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str. Scott A] Length = 135 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + + + + ++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 61 NMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119 Query: 138 SIAAALILQEVLDRIS 153 +AA +ILQ LD + Sbjct: 120 KLAAVMILQSYLDTTN 135 >gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242] gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242] Length = 157 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 IE++ + L + +DLGTK IGLA+SD RR A P + R K +Q A LL Sbjct: 7 PIEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQ 66 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 ++ A + GLPLNM+G+ GPR +TRAF+ N+ + +PFVFWDERL+T + + LI Sbjct: 67 DFDVQALVFGLPLNMDGTAGPRAQATRAFMRNL-RKLTPIPFVFWDERLSTAAVTRELIA 125 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + SR KR + VD +AAA ILQ LDR+S L Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSRL 156 >gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2] gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2] Length = 176 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 I + D+ L P + +DLGTK IG+A DP RR A + R K T A LL+ Sbjct: 9 PIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLA 68 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 F++GLPLNM+ SEGPR ++RAF N+ R +P WDERL+T + ++ Sbjct: 69 LAAERRAVGFVLGLPLNMDASEGPRAQASRAFARNLA-RLTALPIALWDERLSTAAVERA 127 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVL 149 LI +VSR +R VD AAA IL+ L Sbjct: 128 LISADVSRARRAAVVDQHAAAFILEGAL 155 >gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM 15053] gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM 15053] Length = 145 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G K +G+A+SDP A + RK K+ QT + I + ++G Sbjct: 4 RIMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R + Sbjct: 64 LPKHMNNDIGDRAEQSLEFGE-MLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 122 Query: 135 KVDSIAAALILQEVLDRI 152 +D IAA ILQ LD I Sbjct: 123 YIDKIAAVFILQGYLDSI 140 >gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM 16841] gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 4/145 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SD A + R+ K+ Q+ + I N+ ++G Sbjct: 2 RILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R + Sbjct: 62 YPKNMNNTEGERCEKTKEF-KEMLERRTGLNVILWDERLTTVSADKHMMESGIRREDRKK 120 Query: 135 KVDSIAAALILQEVLDRISFLESSK 159 VD IAA ILQ LD ++ K Sbjct: 121 FVDEIAAVFILQGYLDYLAMHPEEK 145 >gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026] gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026] Length = 162 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+ + +IGLP+N +G+ GPRV +TRAFV M + FVFWDERL+TV+A++ Sbjct: 61 KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI M+VSR KR ++DS AAA ILQ LDR+ + + Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157 >gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293] gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293] Length = 137 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + ++ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii NCIMB 8052] gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB 8052] Length = 138 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG+K IG+A+SDP A + R + E+ F + +IGLP Sbjct: 2 RILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP AF +I+ ++ V FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPSGEIAMAFG-KVIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +A+ ILQ LD IS Sbjct: 121 KVASTYILQGYLDMIS 136 >gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus F0211] gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus F0211] Length = 139 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + +K L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR + Sbjct: 62 PKNMNNTSGPRVEASQAYGTK-IEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23] gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578] gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923] gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578] gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923] gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99] Length = 135 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + + + + ++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119 Query: 138 SIAAALILQEVLDRIS 153 +AA +ILQ LD + Sbjct: 120 KLAAVMILQSYLDTTN 135 >gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842] gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222] gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200] gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29] gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28] gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842] gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28] gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29] gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200] gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222] Length = 137 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+A+SD A + ++ + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255] gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255] Length = 163 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 1/159 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 S+L + + + +DLGTK IG+A+SDP RR A + RK T A LL+ Sbjct: 4 SVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 FI+GLP+NM+GSEGPR STRAF N+ R WDERL+T + ++ Sbjct: 64 IAGERRAEGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDFAIGLWDERLSTAAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 LI +++SR +R + +D AA ILQ LDR++ + G Sbjct: 123 LIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161 >gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC 15579] gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC 15579] Length = 137 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+A+SDP A + RK E+ + + GLP Sbjct: 2 RILGLDIGDRTIGVALSDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F ++I V + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 121 KMAATYILQGYLDSLS 136 >gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] Length = 143 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 72/139 (51%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + S+DLG IG+A+SD A + R + L + + A + GL Sbjct: 1 MKRYMSLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR + Sbjct: 61 PKHMNGDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120 Query: 136 VDSIAAALILQEVLDRISF 154 +D +AA ILQ LDR + Sbjct: 121 IDKMAAVYILQGFLDRQNM 139 >gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica subsp. indica ATCC 9039] gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica ATCC 9039] Length = 165 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 +L + +L L P Q + IDLGTK IGL++SD RR A P + R K T+ A LL+ Sbjct: 5 VLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLAL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 ++AAF+IGLPLNM+GS GPRV +T AFV ++ PF +WDERL+T + + L Sbjct: 65 ADQFDVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSG-LTSRPFCYWDERLSTAAVTRDL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 I + SR KR VD +AAA ILQ LDR++++ + Sbjct: 124 IAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETA 160 >gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Ames] gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC 10987] gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Sterne] gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L] gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Bacillus anthracis str. A2012] gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis str. Al Hakam] gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0488] gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0193] gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0174] gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis Tsiankovskii-I] gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W] gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus NVH0597-99] gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108] gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820] gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102] gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. CDC 684] gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42] gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201] gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342] gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1] gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0248] gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str. CNEVA-9066] gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str. A1055] gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Western North America USA6153] gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Kruger B] gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Australia 94] gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1] gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI] gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames] gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC 10987] gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. Sterne] gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction resolvase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction resolvase [Bacillus cereus E33L] gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0488] gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0193] gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0174] gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis Tsiankovskii-I] gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W] gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108] gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus NVH0597-99] gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820] gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102] gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. CDC 684] gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1] gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342] gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201] gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42] gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0248] gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1] gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar anthracis str. CI] gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 137 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + ++ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b] gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b] Length = 160 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 +E+L L + +D+GTK IGLA+SD RR A P + R K T A L + + Sbjct: 7 TVEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVA 66 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 +IAA I+GLPLNM+GSEGPR +TRAF+ N+ + + + FWDERL+T + + L+ Sbjct: 67 QFDIAALIVGLPLNMDGSEGPRAQATRAFMRNL-GARFALRYAFWDERLSTAAVTRELLA 125 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + SR KR VD +AAA ILQ LDR+ L S Sbjct: 126 QDASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158 >gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A] gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A] Length = 166 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 1/159 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 +L + + + +DLGT+ IG+A+SDP RR A + RK T A LL+ Sbjct: 4 PVLPLIEAAAHWPERGALVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLA 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + FI+GLP+NM+GSEGPR STRAF N+ R + WDERL+T + ++ Sbjct: 64 IAGERHAKGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTAAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 LI +++SR +R + +D AA ILQ LDR++ S G Sbjct: 123 LIGLDMSRARRARVIDEHAAIFILQGALDRLAAQRRSSG 161 >gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2] gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2] Length = 138 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D G + IG+A+SD A + +++ + + + ++GLP Sbjct: 2 RTMGLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR + AF + + + +P WDERLTTVSA++ L++ +VSRKKR +D Sbjct: 62 NMNNTIGPRGEISMAFAEQL-QQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVID 120 Query: 138 SIAAALILQEVLDR 151 +AA LILQ LD Sbjct: 121 KMAATLILQNYLDS 134 >gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis XB6B4] Length = 144 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +GLA+SD A + R+ K+ QT + + I + ++G Sbjct: 2 RILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R + Sbjct: 62 YPKNMNNTEGERCEKTKEF-KEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKK 120 Query: 135 KVDSIAAALILQEVLDRISF 154 VD IAA ILQ LD S Sbjct: 121 YVDEIAAVFILQGYLDYRSM 140 >gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas diminuta ATCC 11568] gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas diminuta ATCC 11568] Length = 154 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L + +L + PN P +DLG IG+++SD GR A P + + K +Q A +L Sbjct: 1 MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + ++A +IGLPLNM+G+EGPR S RAF N+ +R V F DERL+T + ++ Sbjct: 61 RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFARNL-ERFRPVNVAFQDERLSTTAVER 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 LI +++++RK+R VD AAA ILQ LDR+ Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRLR 153 >gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803] gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803] Length = 137 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+A+SD A + ++ + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] Length = 137 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+A+SDP A + RK + EL S + + GLP Sbjct: 2 RILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + +F +I++ + VP WDERLTTV+A + +I+ ++SR KR + VD Sbjct: 62 NMNGTLGLQSEKVLSFC-KVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD IS Sbjct: 121 KMAAIYILQGYLDSIS 136 >gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88] gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88] Length = 138 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+AISDP A + R + E+ + + GLP Sbjct: 2 RILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F +++ +++ + WDERLTTV+A + +I+ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVTEFC-DILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVD 120 Query: 138 SIAAALILQEVLDRI 152 IAA ILQ LD + Sbjct: 121 KIAAIYILQGYLDSV 135 >gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT 12067] gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT 12067] Length = 140 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 74/135 (54%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+GT+ IG+A+SD A+ + R + + I + ++G P NM Sbjct: 4 MSLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYPKNM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ G R + A + V V WDERL+TV+A+++L+D ++ RKKR + +D + Sbjct: 64 NGTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVIDMM 123 Query: 140 AAALILQEVLDRISF 154 AA +ILQ LD SF Sbjct: 124 AAVVILQNYLDSKSF 138 >gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis MPA1U2] gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis MPA1U2] Length = 138 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K IG+AISDP A + + + L I + ++G Sbjct: 2 RIIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGY 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN S GPR ++ F ++ +P V WDERLTT +A+++LI +VSRK R + Sbjct: 62 PKNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKKV 120 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 IDKMAAVMILQGYLD 135 >gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1] gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1] Length = 137 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+A+SDP A + R + + L I+ ++ ++G+P Sbjct: 2 RIMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + AF+ + K+ +P WDERL+TV+A+++LI +VSR KR + +D Sbjct: 62 NMNGTVGSQGEKVLAFIEK-VKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVID 120 Query: 138 SIAAALILQEVLDR 151 +AAA+ILQ LD Sbjct: 121 KMAAAVILQGYLDS 134 >gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM 14469] gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM 14469] Length = 161 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+AISD A + R K+ QT + + I ++ ++G Sbjct: 8 RIMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLG 67 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + AF M++R+ +P V WDERLTTV A + L++ V R+KR Sbjct: 68 FPKNMNNTIGERAEKSLAF-KEMLERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKD 126 Query: 135 KVDSIAAALILQEVLDRISF 154 VD +AA ILQ LD ++ Sbjct: 127 YVDKLAAVYILQGYLDYLAM 146 >gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 135 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + + + + ++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVID 119 Query: 138 SIAAALILQEVLDRIS 153 +AA +ILQ LD + Sbjct: 120 KLAAVMILQSYLDTTN 135 >gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273] gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272] gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272] gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273] Length = 137 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+A+SD A + ++ + + + ++GL Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGFLDS 136 >gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC 3502] gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A str. ATCC 19397] gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A str. Hall] gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F str. Langeland] gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum NCTC 2916] gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf] gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1 str. Okra] gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3 str. Loch Maree] gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str. Kyoto] gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4 str. 657] gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A str. ATCC 19397] gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A str. Hall] gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F str. Langeland] gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1 str. Okra] gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3 str. Loch Maree] gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum NCTC 2916] gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf] gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2 str. Kyoto] gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4 str. 657] gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F str. 230613] Length = 137 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+AISDP A + RK E+ + + GLP Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 121 KVAATYILQGYLDSLS 136 >gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 135 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + + + + ++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119 Query: 138 SIAAALILQEVLDRIS 153 +AA +ILQ LD + Sbjct: 120 KLAAVMILQSYLDTTN 135 >gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 139 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I+ +P + DERLTTV A+++LI+ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASKAYGEK-IESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98] Length = 137 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + + + + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQRYAESLRE-LLQLEVILWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 VD +AA +ILQ LD Sbjct: 121 VDKMAAVVILQGYLDS 136 >gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM 20731] gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM 20731] Length = 139 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 78/134 (58%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLGT+ IG+++SD A + RK + L + E + F++G P Sbjct: 2 RIMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS G R ++ F + +R +P V WDERL+TV+A+++LI+ ++ RKKR + +D Sbjct: 62 NMNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIID 121 Query: 138 SIAAALILQEVLDR 151 +AA +ILQ LD Sbjct: 122 MMAAVVILQNYLDS 135 >gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704] gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704] Length = 141 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+AISDP A + RK K+ +T + + I + ++G Sbjct: 2 RIMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R + Sbjct: 62 LPKHMNNDIGDRAERSLEFG-KMLSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D IAA ILQ LD I Sbjct: 121 YIDKIAAVFILQGYLDSI 138 >gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1] gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1] Length = 138 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+A SD A + R + + ++ ++G P Sbjct: 2 RILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR + F + ++ +P WDERLTT+ A++ L+ ++SR KR + +D Sbjct: 62 NMNNTVGPRAKLSEEFADKL-SAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVID 120 Query: 138 SIAAALILQEVL 149 +AA LILQ L Sbjct: 121 KMAAVLILQNYL 132 >gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894] Length = 144 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145 L++M+VSR KR +++DS AA+ IL Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144 >gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402 065] Length = 137 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G + IG+AISDP A + RK E+ + + GLP Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 121 KVAATYILQGYLDSLS 136 >gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31] gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31] Length = 164 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L I + ++ PI +D G K IG+A+SD A P + + K ++ A L Sbjct: 1 MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A +IGLP+NM+G+EG R S RA N++ + ++P FWDERL+T + + Sbjct: 61 QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +LI + +V+RK+R + VD +AAA ILQ L+R+ + + G Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161 >gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7] Length = 155 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 + I +D G+K +G+A+SDP A + RK K+ +T + + I + Sbjct: 2 KKRIIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NMN +EG RV T AF + +R+ + + WDER++TV+++++L++ NV R+ R Sbjct: 62 LGYPKNMNDTEGERVEKTLAFKEAL-ERRTGLEVILWDERMSTVASERVLMEGNVRREDR 120 Query: 133 IQKVDSIAAALILQEVLDRISFLESSK 159 +D +AAA ILQ LD SF E+ Sbjct: 121 KTYIDKMAAAFILQGYLDYQSFSENQA 147 >gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256] gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256] Length = 152 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M D +L +A +D+GTK IG+A+ D G FA P +VRK+ + L Sbjct: 1 MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALK 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + ++GLPLNM+GS+ PR STRAF N+ + +P + WDER +T + ++ Sbjct: 61 ALVAGQAVVGLVVGLPLNMDGSDSPRTQSTRAFARNLA--PLGLPVLLWDERWSTAAVER 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 +I +VSR KR +++DS AAA ILQ +D + Sbjct: 119 AMIAADVSRAKRAERIDSAAAAFILQGAIDAM 150 >gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp. zooepidemicus] gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp. zooepidemicus] Length = 139 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + Q L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASKAYGDR-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 121 VIDKLAAQLILQNYLD 136 >gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905] gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905] Length = 138 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SD A + + + + I F++G Sbjct: 2 RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q Sbjct: 62 PKNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKMAAVMILQGYLDSKN 138 >gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622] gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK 1622] Length = 151 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLGTK IG+A+SD A + R + L + + + ++GLPL Sbjct: 2 RTMGLDLGTKTIGVAVSDGLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEGPR ++R F + + + V WDERL+TV+A + L++ +VSR +R + +D Sbjct: 62 NMDGSEGPRAEASRKFADTLA-QSLGVTVELWDERLSTVAATRTLLEADVSRARRREVID 120 Query: 138 SIAAALILQEVLD 150 +AA ILQ LD Sbjct: 121 QVAAQFILQGWLD 133 >gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44] gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44] Length = 137 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + N+ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQYAESLRE-LLQLEVILWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGYLDS 136 >gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum C19] gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum C19] Length = 157 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I +L L + +DLG K IG+A+SD A P + + K T A L Sbjct: 1 MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + A +IGLP+NM+G+EGPR S RAF N++ + VP FWDER ++ + + Sbjct: 61 HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLLRLR-DVPIAFWDERWSSAAMNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 LI + ++SR KR + +D AAA ILQ LDRI Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRIK 153 >gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII 345-E] gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Dialister micraerophilus DSM 19965] gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII 345-E] gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Dialister micraerophilus DSM 19965] Length = 145 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 78/137 (56%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G+ IG+AISD A + + L + I + ++ ++G+PL Sbjct: 2 RIMALDVGSHTIGVAISDLMGWTAQGLETIRHSTREKDFERLKTIIDSYDVKEIVVGMPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R T FV ++ +P FWDERLTTV AQ+ LI ++SRKKR + +D Sbjct: 62 NMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVID 121 Query: 138 SIAAALILQEVLDRISF 154 +AA +IL+ L + F Sbjct: 122 KLAATVILEGYLRHLEF 138 >gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum A2-162] Length = 140 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SDP A + RK K+ QT + I + ++G Sbjct: 2 RILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R F M+ ++ + + WDERLTTV A + LI+ V R+ R Q Sbjct: 62 FPKNMNNTVGERAEKALEFGE-MLKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRKQ 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D IAA ILQ LD +S Sbjct: 121 YLDGIAAVFILQGYLDSLS 139 >gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing bacterium SM4/1] Length = 140 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I D G+K G+A+SDP A +VRK K+ QT + I I A ++G Sbjct: 2 RIMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R Sbjct: 62 YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AAALILQ LD Sbjct: 121 VIDKVAAALILQGYLDSQR 139 >gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B str. Eklund 17B] gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 137 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG K IG+A+SDP A + R + EL + +IGLP Sbjct: 2 RILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPSGEIAME-MGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +A+ ILQ LDRIS Sbjct: 121 KVASTYILQGYLDRIS 136 >gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137 str. F0430] Length = 142 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 73/140 (52%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 S+D+G IG+A+SD A + R L + + + A + GLP Sbjct: 3 RYMSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG EG R RAF+ R V +WDERL+TV+A + L++ +VSRKKR + +D Sbjct: 63 HMNGDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVID 122 Query: 138 SIAAALILQEVLDRISFLES 157 +AA ILQ LDR L + Sbjct: 123 KMAAVYILQGFLDRQRNLHT 142 >gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125] gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125] Length = 140 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 +D+GTK IG+A+SD A R + + S + + +IGL Sbjct: 2 RTLGLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+GS GP + F + R V V WDERLTT +A+++LI +VSRKKR Sbjct: 62 PKNMDGSIGPSGERSETFAAEL-RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKSV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LDR Sbjct: 121 IDKMAAVMILQGYLDR 136 >gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16] gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16] Length = 142 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77 +D+GTK IG+AISD A P + R + L I ++ +IG P Sbjct: 4 IGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPK 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G + F + +++ V V WDERLTT +AQ++LID +VSRKKR + VD Sbjct: 64 NMNGTVGESATRSETFARTL-EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVD 122 Query: 138 SIAAALILQEVLDRISF 154 +AA ILQ LDR S Sbjct: 123 KMAAVFILQGYLDRQSH 139 >gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15] gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus NA1000] gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus NA1000] Length = 156 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +L IED +L + +D G K IG+A+SD R A P + + K ++ A +L Sbjct: 1 MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + + Sbjct: 61 KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +LI + ++SRK+R + VD +AA ILQ L+R+ L Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156 >gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b] gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b] Length = 140 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73 + + +D+G+K IG+A+SD A + + L FI ++ ++ Sbjct: 1 MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVV 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G P NMNG+ GPR ++ AF ++ +P V DERLTT+ A+++LI +VSRKKR Sbjct: 61 GHPKNMNGTVGPRGEASEAFAEAFTEQ-TGLPCVLVDERLTTMQAERMLISADVSRKKRK 119 Query: 134 QKVDSIAAALILQEVLDR 151 +D +AA +ILQ LDR Sbjct: 120 AVIDKMAAVMILQNYLDR 137 >gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB18] gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB18] Length = 163 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 IL + + + +DLGTK IG+A+SDP RR A ++ A LL Sbjct: 4 PILPLIEAAAQWPARGALIGLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLL 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 N F++GLP+NM+GSEGPR STRAF N R +P WDERL+T + ++ Sbjct: 64 LAGQRNAVGFVLGLPINMDGSEGPRAQSTRAFARNFA-RLTDLPIGLWDERLSTSAVERE 122 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 LI +VSR KR + +D AA ILQ LDR++ L ++ Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLTVLNAA 159 >gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5] Length = 150 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 4/145 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 + +D G+K +G+A+SDP A + RK K+ +T + I+ + ++G Sbjct: 2 RVLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + F M++++ +P V WDERLTT++A + L + V ++ R Q Sbjct: 62 YPKNMNNTVGERAEKSLEF-KEMLEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRKQ 120 Query: 135 KVDSIAAALILQEVLDRISFLESSK 159 +D +AA ILQ LD ++ + Sbjct: 121 YLDQVAAVFILQGYLDAAAYRREQQ 145 >gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442] gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17] gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4] gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4] gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17] gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442] Length = 137 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + N+ I+GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + + F ++ + + + + WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTIGPRGEACQQFAQSLRE-LLQLDVMMWDERLSTMAAERLLISADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQGYLDS 136 >gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas noxia ATCC 43541] gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas noxia ATCC 43541] Length = 137 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 76/137 (55%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G IG+A+SD A + R+ ++ L I A + GLP +M Sbjct: 1 MSLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG EG R RAF+ + +R + +WDERL+TV+A + L++ +VSRKKR + +D + Sbjct: 61 NGQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKM 120 Query: 140 AAALILQEVLDRISFLE 156 AA ILQ LDR L+ Sbjct: 121 AAVYILQGFLDRQQHLK 137 >gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 143 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 72/139 (51%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + S+DLG IG+A+SD A + R + L + + A + GL Sbjct: 1 MKRYMSLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR + Sbjct: 61 PKHMNGDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120 Query: 136 VDSIAAALILQEVLDRISF 154 +D +AA ILQ LDR + Sbjct: 121 IDKMAAVYILQGFLDRQNM 139 >gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC 27755] gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC 27755] Length = 144 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G++ +G+A+SDP A + RK K+ +T + + + ++G Sbjct: 2 RIMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +MN G R + F MI R+ + V WDERLTTVSA++ LI+ V R+ R + Sbjct: 62 LPKHMNNDIGDRAEKSMQFGE-MIGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D IAA ILQ LD Sbjct: 121 YIDQIAAVFILQGYLDS 137 >gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4] gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination [Thermoanaerobacter tengcongensis MB4] Length = 139 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G K IG+AISD A + RK + + + ++ ++GLP Sbjct: 2 RVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136 NMNGS GP+ F + + + +P VFWDERLTT+ A++ LI+ ++SR KR + + Sbjct: 62 NMNGSIGPQGEKVIKFGEKLRE-VLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI 120 Query: 137 DSIAAALILQEVLDR 151 D +AA +ILQ LD Sbjct: 121 DKLAATIILQSYLDS 135 >gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD 2020] gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD 2020] Length = 139 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPRV +++A+ N+I + +P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNSSGPRVEASQAYG-NLIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDRI Sbjct: 121 VIDKLAAQLILQNYLDRI 138 >gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC 10379] gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC 10379] Length = 142 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73 ++ I +D G+K IG+A+SD A + + + + + N+ ++ Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD+++ Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142 >gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047] gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp. equi 4047] Length = 139 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + Q L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASKAYGDK-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 121 VIDKLAAQLILQNYLD 136 >gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg] gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg] Length = 150 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+ +G+AISD + A + RK K+ QT + I + ++G Sbjct: 2 RIMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + F ++ R+ +P V WDERLTTV+A Q+L VS KK+++ Sbjct: 62 YPKNMNNTIGERAEKSEEFAEHL-RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKME 120 Query: 135 KVDSIAAALILQEVLDRIS 153 VD +AA ILQ LD +S Sbjct: 121 VVDKLAAVFILQGYLDYLS 139 >gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter alkaliphilus HTCC2654] gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium HTCC2654] Length = 155 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 2/139 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLP 76 +A +D G K IG+A+SD R+ A P + R KK TQ A L++ + I+ ++GLP Sbjct: 18 ALAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLGLP 77 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NM+G+EGPR TRAF N+ R P FWDERL+TV+A++ L++ + SR KR + Sbjct: 78 RNMDGTEGPRCQKTRAFARNL-SRLTERPITFWDERLSTVAAERALLEADTSRAKRSGVI 136 Query: 137 DSIAAALILQEVLDRISFL 155 D +AA ILQ LDR+ L Sbjct: 137 DHVAAGYILQGALDRMRHL 155 >gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis KC583] gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis KC583] Length = 161 Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I+ I+ ++ L Q IA +DLGTK IG+AISD F++PRP + RKK T AL+L+ Sbjct: 1 MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ IIGLP+NM+GS GPRV +TR FV N+ +PF+FWDERL+T++AQ+ Sbjct: 61 KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSNIA-MYTKIPFIFWDERLSTIAAQR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 L++++VSR KR ++DS AAA ILQ LDRI L + Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157 >gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis ATCC 700641] gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis ATCC 700641] Length = 139 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGKRL-EELFNLPVEYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC 15264] gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC 15264] Length = 173 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 2/154 (1%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 +L + DL + P+ +DLG IG+A SD R A P + + K T A L Sbjct: 10 PVLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFR 69 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + ++A +IGLP+NM+G+EGPR S RAF N+ DR V FWDERL+T + ++ Sbjct: 70 LMDHRKVSALVIGLPVNMDGTEGPRAQSCRAFARNL-DRIRPVNVAFWDERLSTSAVERF 128 Query: 122 LI-DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 LI ++++SRK+R VD AAA ILQ LDR+ Sbjct: 129 LIDELDLSRKRRAGVVDRTAAAWILQGALDRVRH 162 >gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70] gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70] Length = 138 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGL 75 + +DLGTK +G+A+SD A + ++ L I + ++G Sbjct: 2 RVLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F +++ + +P + WDERL+T++A+++LI +VSRKKR Q Sbjct: 62 PKNMNGTVGPRAEASQRFA-KLLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVVILQSYLDS 136 >gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3 str. Alaska E43] gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 137 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG K IG+AISDP A + R + EL + +IGLP Sbjct: 2 RILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD Sbjct: 62 NMNGTIGPSGEIAME-MGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120 Query: 138 SIAAALILQEVLDRIS 153 +A+ ILQ LDRIS Sbjct: 121 KVASTYILQGYLDRIS 136 >gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787] gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787] Length = 143 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 + +D G+K +G+AISDP A + RK K+ QT + + + ++G Sbjct: 2 RVMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN + G R + + M++R+ +P + WDERLTT+ A++ LI+ V R+ R + Sbjct: 62 FPKHMNNTIGDRAEKSLE-LKAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRKK 120 Query: 135 KVDSIAAALILQEVLDRISF 154 VD IAA ILQ LD I Sbjct: 121 YVDKIAAVFILQGYLDSIRM 140 >gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175] gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175] Length = 144 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 87/139 (62%), Gaps = 4/139 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFI 72 PN + +D+G+K +G+A+SD A + + +K ++ ++ + + + Sbjct: 2 PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKK 131 IGLP NMN +EGPRV ++R + ++ ++++ +P VF DERLTT+ A+++L++ VSRKK Sbjct: 62 IGLPKNMNNTEGPRVEASRRYGASL-EKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120 Query: 132 RIQKVDSIAAALILQEVLD 150 R Q +D +AA +ILQ LD Sbjct: 121 RKQVIDMLAAVMILQNYLD 139 >gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046] Length = 138 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISD A + + + + N+ F++G Sbjct: 2 RIMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGY 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR ++ ++ +++ P WDER+TT++A+++LI+ +VSRKKR Q Sbjct: 62 PKNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD + Sbjct: 121 IDKMAAVMILQGYLDSKN 138 >gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM 16646] gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM 16646] Length = 145 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G KRIG+A+SD A + R V + + + + IIGLPL Sbjct: 2 RILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ + F + + + +WDERL+TV+A+++LID ++SR+KR +D Sbjct: 62 NMNGTLGPQGQLVKDFGEKLRH-SLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVID 120 Query: 138 SIAAALILQEVLDRISFLESS 158 ++A +ILQ LD S +++ Sbjct: 121 KLSAIVILQSFLDSRSNIDTG 141 >gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme DSM 15981] gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+ DP A +VRK K+ +T + I I ++G Sbjct: 2 RIMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + +R+ +P + WDERLTTV+A ++L++ V R+ R + Sbjct: 62 YPKNMNNTVGERAQKAEELKAAL-ERRTGLPVILWDERLTTVAADRVLMESGVRREHRKE 120 Query: 135 KVDSIAAALILQEVLDRISF 154 VD IAAA+ILQ LD +SF Sbjct: 121 SVDQIAAAMILQGYLDNLSF 140 >gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC 29176] gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC 29176] Length = 148 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 4/146 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+AISD + A + RK K+ +T + I + ++G Sbjct: 2 RIMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R + F M++R+ + V WDERLTTV+A++ LI+ +V R+ R Q Sbjct: 62 FPKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRKQ 120 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD IAA ILQ LD +S + G Sbjct: 121 YVDKIAAVFILQGYLDLLSMRNGADG 146 >gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM 13479] gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM 13479] Length = 161 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELL 60 + L K I +D G+K +G+A+SD A + R+ K+ +T + Sbjct: 3 FTLGTLYDVEKMRMRIMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIE 62 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I I ++G P NMN + G RV T +F M++R+ +P V WDERLTTV +++ Sbjct: 63 ELIREYEIETIVLGYPKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSER 121 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 IL + V R+ R +D +AA LILQ LD + Sbjct: 122 ILQESGVRRENRKAVIDKVAAGLILQGYLDSLP 154 >gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551] gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319] gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551] gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319] Length = 138 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 + +D+GTK IG+A+SD A + +++ Q+ L I ++ ++GL Sbjct: 2 RVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR + F N + K+ + + WDERL+T++A+++L+ +VSRKKR + Sbjct: 62 PKNMNGTIGPRGEACIEFADN-VKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD Sbjct: 121 IDKMAAVMILQGYLDS 136 >gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656] gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656] Length = 143 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SD A + RK K+ QT + I + ++G Sbjct: 2 RILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN +EG R T+ F +M+ R+ + ++WDERLTTV+A + +++ + R+ R + Sbjct: 62 YPKNMNNTEGERCEKTKEFG-DMLARRTGLEVIYWDERLTTVAADRSMMETGIRRENRKE 120 Query: 135 KVDSIAAALILQEVLDRISFLES 157 VD IAA ILQ LD +S S Sbjct: 121 FVDEIAAIFILQGYLDYLSNSRS 143 >gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170] gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170] Length = 161 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I ++ +L P +P+ +DLGT+ IG+A SD A P + R+K T EL Sbjct: 1 MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + A ++GLP+ M+GSEGPR +TRAF N++ + +P + WDERL+T + + Sbjct: 61 ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALR-DLPVLLWDERLSTAAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152 L+ + +++R +R + VD AAA ILQ LD + Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALDAL 152 >gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus amyloliquefaciens FZB42] gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7] gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42] gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7] Length = 138 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L + N+ ++G Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTIGPRGEASQTFA-KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGYLDSLN 138 >gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str. K-12 substr. MG1655] Length = 180 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 44 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 103 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 104 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 162 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 163 VDSASAVIILESYFEQ 178 >gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759] gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759] Length = 149 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 11/146 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITT-------EN 67 + +D GTK +G+A+SDP A P + RK K+ QT + + I E Sbjct: 2 RVLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEK 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++G P NMN +EG R +T +F +++ +R+ + V WDERLTTV A++IL+D V Sbjct: 62 IEKIVLGYPKNMNNTEGDRCEATVSFKNDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 R+ R +D +AAA+ILQ LD S Sbjct: 121 RRENRKTYIDKMAAAVILQNYLDSKS 146 >gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON] gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON] Length = 144 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G IG+AISD A RK+ ++ + +IGLP Sbjct: 2 RILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNGS GP+ AF + D + V WDERL+TV+AQ+ LI+ +VSR KR + + Sbjct: 62 NMNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVI 121 Query: 137 DSIAAALILQEVLDRISFLESS 158 D +AA ILQ LD + ++ Sbjct: 122 DKMAAVYILQGYLDSLRITKNK 143 >gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 139 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV ++RA+ + + +P + DERLTTV+A+++LI+ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASRAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM 771] gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM 771] Length = 139 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 2/137 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76 I +DLG K IG+A+SDP A + RK Q L I + ++GLP Sbjct: 2 RIMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GP+ F+ + RK+ + WDERL+TV+A++IL+ ++SR KR + + Sbjct: 62 KNMNGTTGPQAEKALDFIEYL-KRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKVI 120 Query: 137 DSIAAALILQEVLDRIS 153 D +AAA+ILQ LD S Sbjct: 121 DKMAAAVILQGYLDAHS 137 >gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI] gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI] Length = 154 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLP 76 I +DLG K+IG+A+SDP A + K + + + + ++GLP Sbjct: 2 RIMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNGS GPR RAF + + +P WDER+TT+ A+++LI+ ++SR +R Q + Sbjct: 62 RNMNGSFGPRAERARAFAGCLAGA-LNLPVELWDERMTTLEAEKLLIEADLSRARRRQVI 120 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 D +AA LILQ LD G Sbjct: 121 DKMAAVLILQSFLDSQGRPRREAG 144 >gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1] Length = 149 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 11/143 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTE-------N 67 I +D GTK +G+A+SDP + A P + RK K+ QT + + + Sbjct: 2 RILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQTLARIEAILEEYGAAGERDR 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++G P NMN SEG R +T+AF ++ +R+ + V WDERLTTV A++IL+D V Sbjct: 62 IELIVLGYPKNMNNSEGDRCEATQAFKEDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 R+ R +D +AAA+ILQ LD Sbjct: 121 RRENRKTYIDKMAAAVILQNYLD 143 >gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J] gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J] Length = 139 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I+ ++P V+ DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGKK-IEDLFHIPVVYQDERLTTVQAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC 11563] gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC 11563] Length = 139 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 +D+G+K +G+A+SDP A + + + L I + A ++GL Sbjct: 2 RYMGLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN S GPR +++ + +IDR +P + DERLTTV A+++LI +VSRKKR + Sbjct: 62 PKNMNNSIGPRAEASQKYGQLVIDR-FDLPVFYQDERLTTVQAERMLIANDVSRKKRKKV 120 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 121 IDKLAAVLILQNYLD 135 >gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099] gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099] Length = 166 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 1/151 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL+ + EN+ Sbjct: 1 MPAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENV 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ LI+M+ S Sbjct: 61 GAVAIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAERTLIEMDFS 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSK 159 R KR K+DS AAA ILQ VLDR+ L+S+ Sbjct: 120 RAKRAGKIDSAAAAFILQGVLDRLQSLDSAA 150 >gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427] gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427] Length = 139 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIG 74 I +D GTK G+AISDP A + R++ + T + T + ++G Sbjct: 2 RILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN + G R T F + + K+ +P WDERL+TV+A+Q+L++ ++SRKKR Sbjct: 62 LPKNMNNTLGERGEKTLLFKEKL-ENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRKN 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAATIILQNYLD 136 >gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48] gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48] Length = 167 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+IL I +L +L P + + +DLG K IG+A+SD P + + K TQ A LL Sbjct: 1 MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID----------RKVYVPFVFWD 110 + + +IGLP+NM+G+EGPR S RAF N++ + +P FWD Sbjct: 61 LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120 Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 ER ++ + LI + +++R KR + +D AAA ILQ LDRI Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRIR 164 >gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270] gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270] Length = 148 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 ++D+G + IG+A+SDP A + R+ + + L + I ENI ++GLP Sbjct: 10 RYMALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGLPK 69 Query: 78 NMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 NMN + GP+ +FV + + V DERLTTVSA++ILI+ N+SRKKR Sbjct: 70 NMNNTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKKRK 129 Query: 134 QKVDSIAAALILQEVLDR 151 + +D +AA ILQ LDR Sbjct: 130 KVIDKVAATYILQSYLDR 147 >gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1] gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1] Length = 150 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLGTK IG+A+SD A + R + L + ++GLPL Sbjct: 2 RTLGLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEGPR ++R F + + +++P FWDERL+TV+A++ L++ +++R KR Q +D Sbjct: 62 NMDGSEGPRAEASRKFADAL-GQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVID 120 Query: 138 SIAAALILQEVLD 150 +AA ILQ LD Sbjct: 121 QMAAQFILQGWLD 133 >gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51] gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium hafniense DCB-2] gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense DCB-2] Length = 142 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D G + IG+A+SD A + R + EL + + + ++G P Sbjct: 2 RIMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR +T F ++ + +P WDERL+T+ AQ+ L++ +VSR KR Q +D Sbjct: 60 NMNGTLGPRAQATEEFAQ-ILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVID 118 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD I Sbjct: 119 KMAAVFILQGYLDYIR 134 >gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str. Jelinkova 176] gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str. Jelinkova 176] Length = 139 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + Q L + +++ F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4] gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4] Length = 139 Score = 178 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77 +D+GTK +G+A+SD A L R + L++ ++ +IGLP Sbjct: 4 LGLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLPK 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP F ++ V FV WDERLTTV+A+++L+ +VSRKKR + +D Sbjct: 64 NMNGTIGPSGERCMEFADSL-KEHVDCEFVMWDERLTTVAAERMLVSADVSRKKRKKVID 122 Query: 138 SIAAALILQEVLDR 151 +AA +ILQ LDR Sbjct: 123 KMAAVMILQGYLDR 136 >gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae ACS-120-V-Col10a] gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae ACS-120-V-Col10a] Length = 140 Score = 178 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + L I + +IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPFGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPR ++R + +M +P + DERLTT +++ LI+ +VSRKKR + Sbjct: 62 PKNMNNTEGPRAEASRHYG-DMAIELFDLPVFYQDERLTTQQSERFLIEAADVSRKKRKK 120 Query: 135 KVDSIAAALILQEVLDRISF 154 +D +AA LILQ LD S Sbjct: 121 VIDKLAAVLILQNYLDSHSH 140 >gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271] gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271] Length = 142 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74 + I +D+G+K +G+A+SD A + + LL + + +IG Sbjct: 3 KRIMGLDVGSKTVGVAVSDLMGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVIG 62 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133 LP NMN S GPR ++ A+ + + + + DERLTT A+++L+ + NVSRKKR Sbjct: 63 LPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 Q +D +AA +ILQ LDRI+ Sbjct: 123 QVIDKLAAVIILQNYLDRIN 142 >gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris BL2] gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2] Length = 161 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + DL + P Q + IDLGTK IGLA+SD RR A P + R K ++ A+ L+ Sbjct: 5 ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + A IIGLPLNM+GS+GPRV +TRAFV ++ V PFV+WDERL+T + + L Sbjct: 65 AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVRSL-SALVSKPFVYWDERLSTAAVTRSL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 ID +VSR KR + VD +AAA ILQ VLDR+ +E+ Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEADA 160 >gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus SPIN 20026] gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus SPIN 20026] Length = 139 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + Q L + ++ F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii str. Challis substr. CH1] gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii str. Challis substr. CH1] Length = 139 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 138 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 75/136 (55%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLGT+ IG+A+SD A + R L + E + AF++G P Sbjct: 2 RIMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G R ++ AF + WDERL+TV+A+++LID +++RKKR + +D Sbjct: 62 NMNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVID 121 Query: 138 SIAAALILQEVLDRIS 153 +AA +ILQ LD + Sbjct: 122 MMAAVVILQNYLDSLR 137 >gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2] gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2] Length = 135 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 3/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+A+SD A + + + + I ++ ++GLP Sbjct: 1 MGLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR +++ + + ++ +P V WDERL+T++A+++L++ +VSRKKR + +D Sbjct: 61 NMNGTIGPRGEASQFYASEL-EKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVID 119 Query: 138 SIAAALILQEVLDR 151 +AA +ILQ L+ Sbjct: 120 KMAAVMILQGFLNS 133 >gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 136 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 4/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + Q L + + F+IGLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASKAYGDR-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKKVI 119 Query: 137 DSIAAALILQEVLD 150 D +AA LILQ LD Sbjct: 120 DKLAAQLILQNYLD 133 >gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 138 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G IG+AISD A P + R+ ++ I N+ ++GLP Sbjct: 3 KILGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GP+ F + ++ V + DER+TT+ A+Q+LI+ +V R+ R + +D Sbjct: 63 NMNNTIGPQSEKVIKFAEKLKNK-FKVEIEYVDERMTTLMAEQVLIEGSVRRENRKKYID 121 Query: 138 SIAAALILQEVLDRIS 153 IAA ILQ LDRI+ Sbjct: 122 KIAATYILQSYLDRIN 137 >gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK330] Length = 139 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADVSRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus thermophilus LMG 18311] gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus thermophilus CNRZ1066] gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG 18311] gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus CNRZ1066] Length = 139 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601] gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601] Length = 138 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISD A + + + + ++ ++GL Sbjct: 2 RVMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR S++ + + +++V +P V WDER+TT +A++ L++ +VSR KR + Sbjct: 62 PKNMNNTLGPRAESSKKYAEVL-EKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKKV 120 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 IDKLAAVMILQSYLD 135 >gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756] gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA] gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756] gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium 8_1_57FAA] gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA] Length = 145 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+AISD R A + RK K+ +T + I ++ ++G Sbjct: 2 RIMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R + F M+ R+ + + WDERLTTV A++ LI+ NV R+ R + Sbjct: 62 FPKHMNNDIGERAQQSMEFGE-MLKRRTGLEVILWDERLTTVEAERTLIESNVRRENRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 121 HIDQIAAVFILQGYLD 136 >gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 141 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG KRIG+A SDP A L RK + + L + ++GLPL Sbjct: 2 RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ T+ F + + + +P FWDERL++ SA+++L++ ++SRK+R + +D Sbjct: 62 NMNGTMGPKALETQEFARALQEA-LKIPVDFWDERLSSKSAERVLLEADLSRKRRKELID 120 Query: 138 SIAAALILQEVLDRIS 153 IAA ILQ LD S Sbjct: 121 KIAAVHILQAYLDGGS 136 >gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341] gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341] Length = 142 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73 ++ I +D G+K IG+A+SD A + + + + + N+ ++ Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD+++ Sbjct: 123 DVIDKMAAVLILQTYLDKLN 142 >gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46] gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46] Length = 168 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 1/144 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +DLGTK IGLA+SD GRR A P + R K T A L + + ++G Sbjct: 17 GRRLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRLAAIAAEHGVGGLVVGH 76 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSEGPR STRAFV N+ + +P + +DERL+T + + L++ + SR +R + Sbjct: 77 PLNMDGSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGKL 135 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 VD +AAA ILQ LD ++ LE + Sbjct: 136 VDKLAAAYILQGCLDVLAGLEPEE 159 >gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424] gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424] Length = 141 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73 ++ I +D G+K IG+A+SD A + + + + + NI ++ Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDR 151 +D +AA LILQ LD+ Sbjct: 123 DVIDKMAAVLILQTYLDK 140 >gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus amyloliquefaciens TA208] gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens LL3] Length = 138 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L + N+ ++G Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTIGPRGEASQTFA-KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGFLDSLN 138 >gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans NG80-2] gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16] gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16] Length = 138 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 +DLGTK +G+A+SD A + + L + I + ++G Sbjct: 2 RTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGW 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR ++ F + + +P V WDERL+T++A+++LI +VSRKKR + Sbjct: 62 PKNMNGTLGPRAEASERFAAKLREE-FSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AAA+ILQ LD Sbjct: 121 IDKMAAAVILQSYLDSKR 138 >gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis m4-4] Length = 138 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 77/136 (56%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+GT+ +G+A+SD A + + + + ++ ++GL Sbjct: 2 RIMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR +++ + + ++ +P ++DERLTT+ A+++LI+ +VSR KR + Sbjct: 62 PKNMNNTMGPRGEASQRYGEGLREK-FGIPVDYYDERLTTMQAERVLIEADVSRGKRKKV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LDR Sbjct: 121 IDKMAAVMILQGYLDR 136 >gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5] gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5] Length = 148 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 5/146 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+AISD A + RK K+ +T + ++ + ++G Sbjct: 2 RIMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R + F +M+ R+ + + WDERLTTV A++ LI+ NV R+ R + Sbjct: 62 FPKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRKK 120 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D IAA ILQ LD + +L+ G Sbjct: 121 YIDKIAAIFILQGYLDSV-YLQRQAG 145 >gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus thermophilus LMD-9] gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9] gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03] Length = 139 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025] gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025] Length = 139 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + + L + + F++GL Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGKK-IKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis ATCC 49540] gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis ATCC 49540] Length = 147 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SDP A + + + + + +A F++GL Sbjct: 2 RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV ++ + + R +P F DERLTTV A ++L+ + ++SR K+ + Sbjct: 62 PKNMNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQKK 121 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA ILQ LDR L Sbjct: 122 VIDEVAATFILQSYLDRHGKL 142 >gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris ATCC 700780] gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris ATCC 700780] Length = 136 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + Q L + + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK115] Length = 139 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM 10507] gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM 10507] Length = 152 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 4/145 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SDP A + RK K+ QT + + I + ++G Sbjct: 2 RILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN + G R + F +M+ R+ +P V WDERLTTV A + L++ V R+ R Sbjct: 62 LPKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRKD 120 Query: 135 KVDSIAAALILQEVLDRISFLESSK 159 VD +AA ILQ LD + + Sbjct: 121 YVDELAAIFILQGYLDAQRIRKEME 145 >gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans UA159] gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159] Length = 139 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + + L + + F++GL Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGKK-IKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1056] Length = 139 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans Z-2901] gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus hydrogenoformans Z-2901] Length = 138 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G K+IG+A+SD A + R + + E+ I ++ +IG P Sbjct: 2 KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR + F + + VFWDERL+TV A+++LI ++SR+KR + +D Sbjct: 62 NMNGTAGPRAELVKRFARELYK-FTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVID 120 Query: 138 SIAAALILQEVLDRIS 153 +AA LIL L+ S Sbjct: 121 KLAATLILSGYLNYKS 136 >gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae NEM316] gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316] Length = 139 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 15912] gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 15912] Length = 139 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGT-MIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas palustris CGA009] gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas palustris TIE-1] gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1] Length = 160 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 IL + + + +DLGTK IG+A SDP R+ A + RK T A LL+ Sbjct: 5 ILPLIEAAVHWPVRGALLGLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLLAL 64 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 F++GLPLNM+GSEGPR STRAF N+ R +P WDERL+T + ++ L Sbjct: 65 AAERTACGFVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTELPIGLWDERLSTAAVEREL 123 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 I +VSR KR + +D AA ILQ LDR++ L ++ Sbjct: 124 IANDVSRAKRAKVIDEHAAIFILQGALDRLAALRRAE 160 >gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis F0399] gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis F0399] Length = 138 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 73/138 (52%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G IG+A+SD A + R + L + + + A + GLP +M Sbjct: 1 MSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG EG R RAF+ V +WDERL+TV+A + L++ +VSRKKR + +D + Sbjct: 61 NGDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKM 120 Query: 140 AAALILQEVLDRISFLES 157 AA ILQ LDR L + Sbjct: 121 AAVYILQGFLDRQRNLHT 138 >gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus ATCC 51100] gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus ATCC 51100] Length = 139 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASKAYGEKIA-QLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300] gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300] Length = 139 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + Q + + + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera micronuciformis F0359] gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera micronuciformis F0359] Length = 138 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 66/133 (49%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G+K IG+A SD A L R+ + L L + + ++G P Sbjct: 2 RILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKPS 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG + FV + V+WDERLTTV AQ+ L++ V R+KR VD Sbjct: 62 HMNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVVD 121 Query: 138 SIAAALILQEVLD 150 +IAA ILQ LD Sbjct: 122 TIAAVFILQNYLD 134 >gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis SK36] gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis SK36] Length = 139 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150] gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150] Length = 139 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGNK-IKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1087] Length = 139 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK405] gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK678] gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK150] gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1] gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1057] gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK408] gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1058] Length = 139 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae R6] gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae D39] gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae SP3-BS71] gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae SP6-BS73] gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae SP9-BS68] gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae SP11-BS70] gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus pneumoniae SP14-BS69] gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae SP18-BS74] gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae SP19-BS75] gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae Hungary19A-6] gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14] gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae JJA] gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae P1031] gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae 70585] gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae Taiwan19F-14] gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae CCRI 1974] gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae CCRI 1974M2] gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae BS455] gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae SP-BS293] gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae BS397] gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200] gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae D39] gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae SP11-BS70] gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus pneumoniae SP14-BS69] gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae SP18-BS74] gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae SP19-BS75] gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae SP3-BS71] gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae SP6-BS73] gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae SP9-BS68] gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14] gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae BS455] gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae SP-BS293] gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae BS397] gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200] Length = 139 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis VMC66] gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis VMC66] gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK72] gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK49] gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK1059] Length = 139 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVSE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus ATCC 9812] gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus ATCC 9812] Length = 139 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + L + N+ F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGDQ-IKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 138 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L I I ++G Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F + + VP V WDERLTT++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGYLDSLN 138 >gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103] gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103] gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis AJ13355] Length = 138 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+A+ A P + + T L++ + ++GLP Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P R F + + R + DERL+TV A+ L + R V Sbjct: 64 LNMDGTEQPLTARARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122 Query: 137 DSIAAALILQEVLD 150 DS +AA+ILQ+ + Sbjct: 123 DSQSAAIILQDWFE 136 >gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426] gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61] gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3] gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52] gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61] gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3] gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52] Length = 138 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 +DLGTK +G+A+SD A + L + I + ++G Sbjct: 2 RTLGLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGW 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR ++ F + + +P V WDERL+T++A+++LI +VSRKKR + Sbjct: 62 PKNMNGTLGPRAEASERFAAKLREE-FSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AAA+ILQ LD Sbjct: 121 IDKMAAAVILQSYLDSKR 138 >gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 147 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SDP A + + + + + E +A F++GL Sbjct: 2 RLLGLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ + Sbjct: 62 PKNMNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA ILQ LDR L Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142 >gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1] gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1] Length = 140 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 68/136 (50%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G K IG A+SD A + R + I+GLP Sbjct: 2 RILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GP+ +AF + + + WDERL+TV+A++ LI +V R KR Q +D Sbjct: 62 NMNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVID 121 Query: 138 SIAAALILQEVLDRIS 153 +AA ILQ LD +S Sbjct: 122 KMAAVFILQGYLDSLS 137 >gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325] gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325] Length = 142 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73 + I +D G+K IG+A+SD A + + + + + N+ I+ Sbjct: 3 EKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR Sbjct: 63 GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD+++ Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142 >gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK353] Length = 139 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK160] Length = 139 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143] gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143] Length = 139 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + Q + + + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis F0405] gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis F0405] Length = 139 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGT-MIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34] gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 139 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ I+ +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-INELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 179 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 ++L +A +D+GTK IGLA+ D A P + RKK T L F+ + + Sbjct: 35 FQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQV 94 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +IGLPLN++GS+ PR S RAF N+ + +P + WDER +T + + L++ + S Sbjct: 95 KGLVIGLPLNLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADAS 152 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155 R +R + VD +AAA ILQ +D + Sbjct: 153 RARRSEVVDKMAAAYILQGAIDSFAMF 179 >gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus SAFR-032] gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Bacillus pumilus SAFR-032] gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] Length = 138 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75 I +DLGTK +G+AISD A + + L ++ ++G Sbjct: 2 RILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR ++++F + + VP V WDERL+T++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTVGPRGEASQSFAKVL-ENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGYLDSLN 138 >gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633] gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633] Length = 140 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 82/136 (60%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A +V + ++ + + +IG+ Sbjct: 2 RVMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGM 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN + GPR +++ + ++ ++++ +P VF DERLTT+ A+++L+ + NVSRKKR + Sbjct: 62 PKNMNNTAGPRAEASQKYGRSL-EKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRKE 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAVIILQNYLD 136 >gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium bathyomarinum JL354] Length = 162 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 L ++L + +DLGTK IG+A+ D G RFA L R K + EL I +I Sbjct: 14 LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +IGLP NM+GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++VS Sbjct: 74 RGIVIGLPRNMDGSEGPRAQASRAYARNLAEA-FGLPVLLWDERWSTKSAEDAMIGLDVS 132 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 R+KR +++D+ AA +ILQ +D Sbjct: 133 RRKRAERIDAEAATIILQGAID 154 >gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM 5501] gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D G KRIG A SD A + + + E+ S I ++ ++GL Sbjct: 1 MSRILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR T FV + + P + WDERL+T +A++ L+ +VSR KR Sbjct: 61 PKNMNGTLGPRAEKTLDFVEQLKEEIEP-PIITWDERLSTAAAERTLLKADVSRAKRKDV 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD S Sbjct: 120 IDKMAAVVILQSYLDAQS 137 >gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus JW/NM-WN-LF] gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 141 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I DLG IG+A+SD + A + + R+ + + ++ I ++ I+GLP Sbjct: 2 RIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS G F+ ++ +++V +P DERLT+ A+Q L++ +VSRKKR Q +D Sbjct: 62 NMNGSLGQMADQIMDFIKSL-EQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVID 120 Query: 138 SIAAALILQEVLDR 151 +AA ILQ LDR Sbjct: 121 KLAAVNILQTYLDR 134 >gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 903] gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus parasanguinis ATCC 903] Length = 139 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SDP A + + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGA-MIAEKFGMPVDYQDERLTTVAAERMLIEQADISRSKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis 05ZYH33] gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis 98HAH33] gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591] gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84] gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7] gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407] gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33] gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33] gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591] gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84] gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407] gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7] gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus suis GZ1] Length = 139 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYG-DLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334] gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334] Length = 139 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 142 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + +L+ I + +I Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD IS Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142 >gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM 20544] gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM 20544] Length = 138 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 72/138 (52%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + S+D+G + IG+A+SD A + RK + L + + + GL Sbjct: 1 MKRYMSLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+G+EG R + F+ + V FWDERL+TV+A + LI+ +VSR+KR + Sbjct: 61 PKNMDGTEGDRCAIVKEFMAEVKKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ LD Sbjct: 121 IDKMAAVFILQGFLDSKR 138 >gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5] gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp. subtilis str. 168] gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp. natto BEST195] gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5] Length = 138 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L I I ++G Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F + + VP V WDERLTT++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGYLDSLN 138 >gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1] gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1] Length = 139 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+A+ A P + + + + ++GLP Sbjct: 4 QTLLGFDFGTKSIGVAVGQELTGSARPLTAIKAQDGIPDWQVIEKLLKEWQPDFVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P R F + + R + DERL+TV A+ L + R V Sbjct: 64 LNMDGTEQPLTDRARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122 Query: 137 DSIAAALILQEVLDR 151 DS +AA+ILQ+ + Sbjct: 123 DSQSAAIILQDWFEN 137 >gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS8232] gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes SSI-1] gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS10394] gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS6180] gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS9429] gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS2096] gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS10750] gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes str. Manfredo] gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes ATCC 10782] gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS10394] gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180] gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes MGAS9429] gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS2096] gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS10750] gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str. Manfredo] gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes ATCC 10782] Length = 139 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ L+R Sbjct: 121 VIDKLAAQLILQNYLNR 137 >gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis ATCC 14580] gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis ATCC 14580] gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2] gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580] gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580] gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2] Length = 139 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLG+K +G+A+SD A + + L I ++G Sbjct: 2 RILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F + + VP V WDERL+T++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTVGPRGEASQKFAEVL-EETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGYLDSLN 138 >gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15] gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15] Length = 140 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFII 73 + +D+G+K IG+A+SD A + + L + I + +I Sbjct: 1 MKRAIGLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKRLEAIIKEYGVEIIVI 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G P NMNGS GPR ++ AF I+ + + V DERLTT+ A+++LID +VSRKKR Sbjct: 61 GHPKNMNGSIGPRAEASEAFARE-IETQTGLSTVLVDERLTTMQAERMLIDADVSRKKRK 119 Query: 134 QKVDSIAAALILQEVLDRIS 153 Q +D +AA +ILQ LDR + Sbjct: 120 QVIDKMAAVMILQSYLDRAN 139 >gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3] gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3] Length = 147 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SDP A + + + + + E +A F++GL Sbjct: 2 RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ + Sbjct: 62 PKNMNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA ILQ LDR L Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142 >gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM 20016] gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112] gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23] gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM2-3] gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri SD2112] gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM4-1A] gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016] gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri] gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23] gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM2-3] gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri SD2112] gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri MM4-1A] Length = 147 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 + +D+G+K +G+++SDP A + + + + + E +A F+IGL Sbjct: 2 RLMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV +++ + + R +P F DERLTTV A ++L+ + ++SR K+ + Sbjct: 62 PKNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA ILQ LDR L Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142 >gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415] gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415] Length = 139 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RLMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGEKIAE-LFDIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ L+R+ Sbjct: 121 VIDKLAAQLILQNYLERM 138 >gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1] gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1] Length = 138 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+A+SD A + + + + ++G Sbjct: 2 KIMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GPR +++ + + +++ +P + WDERL+T A++IL++ +VSRKKR + Sbjct: 62 PKNMNNTIGPRAEASKVYAEEL-KKRLNLPVILWDERLSTAQAERILLEADVSRKKRKKV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA++ILQ LD Sbjct: 121 IDKMAASVILQGFLDS 136 >gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1] gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1] Length = 139 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 + I +D GTK +G+A+SD A P + RK K+ +T + + N+ + Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D IAA++ILQ LD + Sbjct: 120 KKVIDQIAASMILQGYLDSL 139 >gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis SK355] Length = 139 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRRK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis ATCC 700779] gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis ATCC 700779] Length = 136 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + L + T + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae G54] gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 139 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353] gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353] Length = 145 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 + +D GTK +G+A+SD A + RK K+ QT + + I ++ + Sbjct: 2 KERWMGLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP NMN + G R T+ F M+ R+ + V WDERLTT+ +++IL + V R+ R Sbjct: 62 LGLPKNMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENR 120 Query: 133 IQKVDSIAAALILQEVLD 150 +++D +AA LILQ +D Sbjct: 121 KERIDWMAATLILQSYMD 138 >gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus casseliflavus ATCC 12755] gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus casseliflavus ATCC 12755] Length = 143 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SDP A + + L + ++ F++GL Sbjct: 2 RIMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + Sbjct: 62 PKNMNNTIGPRAEASMAYGAA-IEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAVMILQNYLD 136 >gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149] gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149] Length = 148 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+AISD A + RK K+ +T + + + ++G Sbjct: 2 RIMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R Q Sbjct: 62 FPKHMNNDVGERAKKSLEF-KEMLVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRKQ 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D IAA ILQ LD I Sbjct: 121 YIDKIAAVFILQGYLDSI 138 >gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 140 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G K IG+A+SD A P + R+ Q ++ + I NIA ++GL Sbjct: 5 MEKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ F + ++ V ++ DER+TT+SA +ILI+ V R+ R Q Sbjct: 65 PKNMNNTLGPQSEKVLKFSEKLKNK-YGVEIIYIDERMTTISANRILIEGEVRRENRKQY 123 Query: 136 VDSIAAALILQEVLDR 151 VD IAA ILQ LD Sbjct: 124 VDKIAATYILQTYLDS 139 >gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942] gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942] Length = 138 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L I ++G Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGF 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + Sbjct: 62 PKNMNGTVGPRGEASQTFA-KLLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD ++ Sbjct: 121 IDKMAAVMILQGYLDSLN 138 >gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis F0396] gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus vestibularis ATCC 49124] gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis F0396] gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus vestibularis ATCC 49124] Length = 139 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 139 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ ++SR KR + Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS10270] gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes MGAS10270] Length = 139 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + PRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTNSPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ L+R Sbjct: 121 VIDKLAAQLILQNYLNR 137 >gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174] gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174] Length = 140 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 4/140 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SDP A + RK K+ +T ++ + I ++G Sbjct: 2 RILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R F M+ ++ + + WDERLTTVSA + L++ V R+ R + Sbjct: 62 YPKNMNNTVGERAEKALEFGE-MLKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRKE 120 Query: 135 KVDSIAAALILQEVLDRISF 154 +D IAA ILQ LD + Sbjct: 121 YLDGIAAVFILQGYLDSLKM 140 >gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10] gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10] Length = 151 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 6/156 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+ +EDL P+ P+ ++D G+K IG+A R + P + R K T A + Sbjct: 1 MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + A ++GLP+NM+GSEGPRV S RA N++ + +P F DERL+T A++ Sbjct: 56 ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMARNLMRLR-DLPIAFQDERLSTFEAEE 114 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 LI V R KR +D+ AAA ILQ LDR+ L Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEMLR 150 >gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC 27750] gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC 27750] Length = 140 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIG 74 I +D+GTK +G+A+SDP A P + RK+ + T + I+ ++ ++G Sbjct: 2 RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NM+ + G R + F + +R+ +P WDERLTTV A ++L + + R+ R Sbjct: 62 YPKNMDDTIGERAKACEEFAAAL-ERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKT 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA IL+ ++ Sbjct: 121 VIDQLAAVFILRGYMES 137 >gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1 GAS] gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS5005] gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes MGAS5005] Length = 139 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ L+R Sbjct: 121 VIDKLAAQLILQNYLNR 137 >gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6] gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6] Length = 139 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFSLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium HTCC2083] gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae bacterium HTCC2083] Length = 160 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+D +L + + +DLGTK IG+++SD A P + R K T A L Sbjct: 1 MIFETIDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLE 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I I ++GLP NM+GSEGPR STRAF N+ R+ +P +WDERL+TV+A++ Sbjct: 61 QIIEARYIGGIVLGLPFNMDGSEGPRCQSTRAFARNLA-RQSELPITYWDERLSTVAAER 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L+ + SR++R + +D++AAA ILQ LDR+S + Sbjct: 120 ALLAADASRRRRAEVIDNVAAAYILQGALDRLSHIRREA 158 >gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946] gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946] Length = 140 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 NQ + D GTK IG+AI A P L + L + + ++G Sbjct: 2 RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+GSE P R F + + R V DERL+TV A+ L + R Sbjct: 62 LPLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKG 120 Query: 135 KVDSIAAALILQEVLDR 151 VDS++A +IL+ + Sbjct: 121 NVDSLSAVIILESWFEN 137 >gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch sediment'] Length = 144 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q ID GTKRIG+AISD A P P L + + I ++GL Sbjct: 1 MQRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP AF + + V WDERLT+++A+++LI+ ++SR KR ++ Sbjct: 61 PKNMNGTLGPSAERALAFAGQL-EEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRR 119 Query: 136 VDSIAAALILQEVLDR 151 VD +AA LILQ LDR Sbjct: 120 VDQMAAVLILQGFLDR 135 >gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797] gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797] Length = 162 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +D GTKR+G+AIS + A P R+ + Q LLS IT Sbjct: 11 FEAEFPAEGRLLGLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRC 70 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP++M+G EG + R F N + + +P +WDER ++ +A++IL+++N+S Sbjct: 71 KGLVVGLPVHMSGDEGQKAKEARQFG-NWVSQFAEIPVRYWDERYSSATAEEILVNLNMS 129 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 R KR +D +AA +ILQ LD Sbjct: 130 RNKRKAYLDKLAAQIILQSFLDS 152 >gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980] gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980] Length = 143 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAVMILQNYLD 136 >gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831] gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 137 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGL 75 I +D+G+K IG+A+SD A + + EL I+ I IIGL Sbjct: 2 KIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ G R +++ + N I++ +P WDERLTT++A+++L++ ++SR KR + Sbjct: 62 PKNMNGTIGERGEASQRYA-NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQ LD+ Sbjct: 121 IDKMAAVMILQGYLDQ 136 >gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont] Length = 138 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+AI A P L + T + + ++GL Sbjct: 3 SETLLGFDFGTKSIGVAIGQQLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L + R + Sbjct: 63 PLNMDGSEQPLTARARKFANRLHGR-FGVRVELQDERLSTVEARADLFERGGYRALQKGH 121 Query: 136 VDSIAAALILQEVLD 150 +DS +A +ILQ+ + Sbjct: 122 IDSQSAVIILQDWFE 136 >gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430] gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430] gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC BAA-2158] Length = 141 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 NQ + D GTK IG+AI A P L + L + + ++G Sbjct: 3 RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 62 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+GSE P R F + + R V DERL+TV A+ L + R Sbjct: 63 LPLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKG 121 Query: 135 KVDSIAAALILQEVLDR 151 VDS++A +IL+ + Sbjct: 122 NVDSLSAVIILESWFEN 138 >gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius C56-YS93] gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1] gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius C56-YS93] gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1] Length = 138 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 3/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77 +DLGTK +G+A+SD A + + L I + ++G P Sbjct: 4 LGLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFPK 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR +++ F +++++ +P + WDERL+T++A+++LI +VSRKKR + +D Sbjct: 64 NMNGTVGPRAEASQRFA-KILEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRKVID 122 Query: 138 SIAAALILQEVLDR 151 +AA +ILQ LD Sbjct: 123 KMAAVVILQSYLDS 136 >gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU121] Length = 142 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + +L+ I + +I Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD IS Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142 >gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA] gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA] Length = 142 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+AISD A + RK K+ +T + + I + ++G Sbjct: 2 RIMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G R + AF +M++R+ + + WDERLTTV A++ LI+ NV R++R + Sbjct: 62 FPKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD IAA ILQ LD + Sbjct: 121 YVDKIAAIFILQGYLDSV 138 >gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus'] gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus'] Length = 136 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G KR+G+A+SD A P L + + +EL +I ++ I+G+P Sbjct: 2 RILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS G R T+AF+ N + + +P DERLTT A+ IL++ ++SR +R +D Sbjct: 62 NMDGSRGKRAEITQAFI-NFLKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVID 120 Query: 138 SIAAALILQEVLD 150 +AAALILQ LD Sbjct: 121 KLAAALILQSYLD 133 >gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium 5_1_63FAA] Length = 139 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 + I +D GTK +G+A+SD A P + RK K+ +T + + ++ + Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDTLVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D IAA++ILQ LD + Sbjct: 120 KKVIDQIAASMILQGYLDSL 139 >gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM 14863] gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 144 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G K IG+A+SD A + R+ + Q L + +++G+P Sbjct: 2 RIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR TRAF+ + +P WDERL+T++A+++L++ +VSR +R + +D Sbjct: 62 NMNGTYGPRAELTRAFMERLAGHS-GLPVEAWDERLSTMAAERVLLEADVSRARRRKVID 120 Query: 138 SIAAALILQEVLD 150 +AAA+ILQ LD Sbjct: 121 KMAAAVILQGYLD 133 >gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC 35037] gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC 35037] Length = 139 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + Q + + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAQLILQNYLDR 137 >gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1] gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1] Length = 145 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 2/144 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +DLGTK IG+A+SD A + RKK A L I + I+GL Sbjct: 1 MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 P NM+GSEGPR +TRAF N+ R ++ FWDERL+TV+A++ LI + SRK+R Sbjct: 61 PRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRS 120 Query: 134 QKVDSIAAALILQEVLDRISFLES 157 + +D++AA+ ILQ LDR+ L + Sbjct: 121 EVIDAVAASYILQGALDRLRHLRA 144 >gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1] gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1] Length = 143 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75 I +D+G KR+G+AISD A + RK + + I+ N+ I+GL Sbjct: 2 RILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNG+ GP + + + + + + FWDERLTT +A++ILI+ +VSR+KR Sbjct: 62 PKNMNGTLGPSSEAVENYTKKL-QKAISIDLEFWDERLTTAAAERILIEADVSRQKRKGV 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA LILQ LD Sbjct: 121 IDKLAAVLILQSYLDS 136 >gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase Length = 163 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 ++L +A +D+GTK IGLA+ D A P + RKK T L F+ + + Sbjct: 19 FQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQV 78 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +IGLPLN++GS+ PR S RAF N+ + +P + WDER +T + + L++ + S Sbjct: 79 KGLVIGLPLNLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADAS 136 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155 R +R + VD +AAA ILQ +D + Sbjct: 137 RARRSEVVDKMAAAYILQGAIDSFAMF 163 >gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1] Length = 159 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ I ++ L P Q IA +DLGTK IG+AISD F++PRP + RKK T AL L+ Sbjct: 1 MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 EN+ +IGLP+NM+GS GPRV +TR FV NM +PFVFWDERL+T++AQ+ Sbjct: 61 QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 L++M+VSR KR ++DS AAA ILQ VLDRI L ++G Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159 >gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1] gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1] Length = 146 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A+SD A + R+ K+ +T + I I I+G Sbjct: 2 RIMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN S G R T F +I R+ + + WDERLTTV++++IL + V R+ R Sbjct: 62 YPKNMNNSAGQRAEKTEQFKEMLI-RRTGLNVILWDERLTTVASERILQESGVRREHRKA 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA LILQ LD + Sbjct: 121 VIDQVAAGLILQGYLDSLP 139 >gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes NZ131] gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131] Length = 139 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + +K L + + F+IGL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPRV ++ + + I+ +P + DERLTTV A+++LI+ ++SR KR + Sbjct: 62 PKNMNNTNGPRVDASITYGSH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ L+R Sbjct: 121 VIDKLAAQLILQNYLNR 137 >gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae 2603V/R] gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae A909] gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 18RS21] gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae H36B] gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae CJB111] gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 515] gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 2603V/R] gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae A909] gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 18RS21] gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae 515] gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae CJB111] gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae H36B] gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae ATCC 13813] Length = 136 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 4/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + L + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV A+++L++ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119 Query: 137 DSIAAALILQEVLDRI 152 D +AA LILQ LDR+ Sbjct: 120 DKLAAQLILQNYLDRM 135 >gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing bacterium SSC/2] Length = 139 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72 + I +D GTK +G+A+SD A P + RK K+ +T + + ++ + Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119 Query: 133 IQKVDSIAAALILQEVLDRI 152 + +D IAA++ILQ LD + Sbjct: 120 KKVIDQIAASMILQGYLDSL 139 >gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus haemolyticus JCSC1435] gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 142 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74 I +D+G+K +G+AISD A L + + +L++ I N+ + +IG Sbjct: 4 HKILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + Sbjct: 64 LPKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD I Sbjct: 124 VIDKMAAVFILQGYLDSIQ 142 >gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96] gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96] Length = 140 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTK IG+AI A P L + + + + ++GL Sbjct: 3 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121 Query: 136 VDSIAAALILQEVLDR 151 VDS++A +IL+ + Sbjct: 122 VDSLSAVIILESWFEN 137 >gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius ATCC 35098] gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius ATCC 35098] Length = 139 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G K IG+A+SDP A+ + RK + L I ++ ++GL Sbjct: 1 MSRIMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ +FV ++I ++V + V+ DER+TT+ ++ +LIDM+V R+ R + Sbjct: 61 PKNMNNTIGPQAMRVMSFV-DLIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKY 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA ILQ LDR Sbjct: 120 IDKIAATFILQTYLDRRK 137 >gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO] gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO] gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636] gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a04] gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133C] gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0082] gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133A] gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133B] gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a01] gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO] gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636] gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a01] gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133B] gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133A] gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133C] gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0133a04] gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium TX0082] Length = 143 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAISDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAVMILQNYLD 136 >gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium xylanolyticum LX-11] Length = 140 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 2/137 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G K IG+A+SDP A + R+ + E+ I + ++G P Sbjct: 2 RTIGLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMNG+ G + FV + + + +P + WDERLTTV A ++L++ ++ R KR + + Sbjct: 62 NMNGTIGAQGQKVINFVEYLKEE-IDLPIMLWDERLTTVEANRMLVENADMRRDKRKKVI 120 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD Sbjct: 121 DKLAATIILQGYLDYKR 137 >gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617] Length = 141 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTK IG+AI A P L + + + + ++GL Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L + R Sbjct: 64 PLNMDGSEQPLTARARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122 Query: 136 VDSIAAALILQEVLDR 151 VDS++A +IL+ + Sbjct: 123 VDSLSAVIILESWFEN 138 >gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271] gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271] Length = 134 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +DLG K IG+A+SD A P + R + Q EL I + ++G P Sbjct: 2 RVMGLDLGEKTIGVAVSDLLMLTAQPLLVIKRSEKEQ--EELAGIIKEYEVDTIVVGYPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ G R +T AF + +P WDERL+TV+AQ+ LI +VSR KR + +D Sbjct: 60 NMNGTIGERALATEAFAQEL-QAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVID 118 Query: 138 SIAAALILQEVLDR 151 +AA ILQ LD Sbjct: 119 KMAAVFILQGFLDS 132 >gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] Length = 142 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + + +L+ I + +I Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. MG1655] gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073] gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. W3110] gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89] gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536] gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1] gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS] gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC 8739] gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr. DH10B] gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638] gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11] gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88] gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a] gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989] gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952] gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B] gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354] gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 119-7] gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1] gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 115-1] gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1] gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 116-1] gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1] gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1] gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1] gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1] gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 196-1] gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 185-1] gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1] gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1] gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 146-1] gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101] gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736] gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736] gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605] gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206] gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271] gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591] gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical Protein gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical Protein gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073] gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. MG1655] gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12 substr. W3110] gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89] gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536] gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1] gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS] gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739] gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12 substr. DH10B] gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638] gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11] gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989] gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88] gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a] gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82] gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952] gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1] gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15] gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042] gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354] gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034] gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 196-1] gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 185-1] gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1] gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1] gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1] gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1] gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1] gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 115-1] gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 116-1] gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1] gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 119-7] gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1] gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1] gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 146-1] gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101] gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146] gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407] gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1 str. NRG 857C] gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1] gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1] gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 153-1] gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3] gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431] gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327] gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1] gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520] gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482] gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252] gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007] gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1] gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167] gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86] gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736] gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605] gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206] gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271] gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591] gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus C3-41] gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus C3-41] Length = 135 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+A+SD A + + + + I F++G P Sbjct: 1 MGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPT 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSR+KR Q +D Sbjct: 61 NMNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVID 119 Query: 138 SIAAALILQEVLDRIS 153 +AA +I+Q LD + Sbjct: 120 KMAAVMIVQGYLDSKN 135 >gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae TIGR4] gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae SP23-BS72] gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669] gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae BS457] gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae BS458] gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B] gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae SP23-BS72] gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669] gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae TCH8431/19A] gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae OXC141] gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae INV200] gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae BS458] gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae BS457] gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375] gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570] gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae GA17545] gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301] gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317] gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368] gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae GA47901] Length = 136 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + ++ Q + + T + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 139 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + L + + F++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV +++ + I++ +P + DERLTTV A+++L++ ++SR KR + Sbjct: 62 PKNMNNTEGPRVEASKVYGDK-INKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA LILQ LDR+ Sbjct: 121 VIDKLAAQLILQNYLDRM 138 >gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str. 301] gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str. 2457T] gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046] gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227] gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str. 8401] gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A] gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5] gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC 3083-94] gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A] gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22] gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019] gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171] gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012] gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1] gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6 str. E2348/69] gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii ATCC 35469] gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1] gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026] gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43] gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9] gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str. 12009] gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str. 11368] gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str. 11128] gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli FVEC1412] gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088] gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302] gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 107-1] gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 198-1] gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1] gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 187-1] gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W] gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 145-7] gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143] gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280] gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299] gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9] gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T] gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227] gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A] gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5] gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94] gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A] gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22] gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019] gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171] gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012] gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1] gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469] gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1] gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026] gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43] gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11 str. 11368] gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2 str. 12009] gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H- str. 11128] gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017] gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088] gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli FVEC1412] gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302] gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 198-1] gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1] gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 187-1] gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 107-1] gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W] gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 145-7] gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T] gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W] gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC 74-1112] gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905] gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83] gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14] gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010] gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G] gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68] gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180] gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357] gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11] gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120] gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489] gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863] gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509] gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253] gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii ECD227] gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v] gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143] gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280] gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299] gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82] gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74] gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74] gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9] gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70] gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671] gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71] gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71] gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6] gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218] gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272] gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304] gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 +DS +A +IL+ ++ Sbjct: 121 IDSASAVIILESYFEQ 136 >gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163] Length = 141 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTK IG+AI A P L + + + + ++GL Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L + R Sbjct: 64 PLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122 Query: 136 VDSIAAALILQEVLDR 151 VDS++A +IL+ + Sbjct: 123 VDSLSAVIILESWFEN 138 >gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 110-3] gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + + DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str. REL606] gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50] gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)] gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str. REL606] gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli BL21(DE3)] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 EDL933] gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. Sakai] gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4113] gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4401] gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4501] gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4486] gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4196] gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4076] gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC869] gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC508] gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. EC4024] gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4206] gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4045] gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4042] gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4115] gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. TW14588] gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. TW14359] gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK2000] gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7 str. FRIK966] gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str. CB9615] gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4196] gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4113] gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4076] gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4401] gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4486] gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4501] gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC869] gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC508] gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4206] gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4045] gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4042] gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC4115] gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli] gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli] gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str. TW14588] gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7 str. TW14359] gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str. CB9615] gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str. EC1212] gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. G5101] gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H- str. 493-89] gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H- str. H 2687] gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7 str. USDA 5905] gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7 str. LSU-61] gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str. 1044] gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str. 1125] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 +DS +A +IL+ ++ Sbjct: 121 IDSASAVIILESYFEQ 136 >gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 143 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G++ +G+++SDP A + + + L I +N ++GL Sbjct: 2 RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN SEGPR ++R + +I++ +P F DERLTTV A+++LI + N+SRKKR + Sbjct: 62 PKNMNNSEGPRAEASRNYA-KLIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRKK 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D IAA ILQ LD L Sbjct: 121 VIDKIAAEFILQNYLDSKGKL 141 >gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39] gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39] Length = 138 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + + DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB] gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB] Length = 139 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+A+ A P L + L + + ++GLP Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P R F + + R + DERL+TV A+ L + R V Sbjct: 64 LNMDGTEQPLTDRARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122 Query: 137 DSIAAALILQEVLDR 151 DS +AA+ILQ+ + Sbjct: 123 DSQSAAIILQDWFEN 137 >gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus H19] gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus H19] Length = 142 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 2/139 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G++ +G+AISD A + + +L+ I N++ +I Sbjct: 3 QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRI 152 Q +D +AA ILQ LD + Sbjct: 123 QVIDKMAAVFILQGYLDSL 141 >gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MW2] gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus COL] gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus JH9] gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus JH1] gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH130] gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus 55/2053] gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus 68-397] gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763] gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719] gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299] gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115] gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224] gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937] gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus ED98] gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117] gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus C160] gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WBG10049] gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M899] gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C427] gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus 132] gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M1015] gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754] gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819] gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus MR1] gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796] gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus MN8] gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus COL] gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp. aureus JH9] gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp. aureus JH1] gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH130] gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus 55/2053] gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus 68-397] gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763] gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719] gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299] gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115] gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224] gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937] gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus ED98] gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C427] gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M899] gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WBG10049] gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus Btn1260] gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus C160] gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117] gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus M1015] gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754] gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819] gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796] gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus MN8] gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp. aureus ED133] gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus TCH60] gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS03] gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS00] gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus subsp. aureus MRSA177] gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus O11] gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus O46] gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus T0131] gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp. aureus 21172] gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp. aureus 21189] gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp. aureus 21193] Length = 142 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G++ +G+AISD A + + +L+ I N+ +I Sbjct: 3 QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRI 152 Q +D +AA ILQ LD + Sbjct: 123 QVIDKMAAVFILQGYLDSL 141 >gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114] gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114] Length = 156 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 + +D + + N I ID G K IGL++SDP ++ A P +V KK Q EL + Sbjct: 6 LCDNKDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELNNI 65 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I I +IG P+NM+G+ GPR S R F N I + +P WDERL++ A ++ Sbjct: 66 IREYEIKGIVIGNPINMDGTSGPRSQSARDFAQN-ISKNTKLPITLWDERLSSEGAFNLM 124 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 D++++ K+ + +D AAA ILQ LD ++ Sbjct: 125 GDLDINSSKKSKNLDQHAAAFILQGYLDFLN 155 >gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1] gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1] Length = 143 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ + I +P + DERLTTV A+++L++ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASMLYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAVMILQNYLD 136 >gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor NM305] gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor NM305] Length = 140 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + + D GT IG A+ A P + ++ I ++GLP Sbjct: 3 KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P + F + + + + +P DERLTTV A+ + + + KV Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121 Query: 137 DSIAAALILQEVLDRIS 153 D+I+A LIL+ + S Sbjct: 122 DAISACLILESWFENQS 138 >gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC 6249] gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis ATCC 49296] gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease [Streptococcus oralis Uo5] gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC 6249] gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis ATCC 49296] gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease [Streptococcus oralis Uo5] Length = 136 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + Q + + + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972] gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972] gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972] Length = 138 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718] gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718] Length = 138 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC 700338] gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC 700338] Length = 136 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + L + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN +EGPRV +++A+ I+ +P + DERLTTV A+++L++ +VSR KR + + Sbjct: 61 NMNNTEGPRVEASKAYGDK-INELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119 Query: 137 DSIAAALILQEVLDRI 152 D +AA LILQ LDR+ Sbjct: 120 DKLAAQLILQNYLDRM 135 >gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From Escherichia Coli Length = 138 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica PHL213] gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica PHL213] gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 141 Score = 173 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + + D GT IG A+ A + E+ + ++GLP Sbjct: 7 KTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIPNWEEIGKLLQDWKPDMLVVGLP 66 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P R F + + + + +P DERLTTV A+ + + + KV Sbjct: 67 LNMDGTEQPLTQRARKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKDKV 125 Query: 137 DSIAAALILQEVLDR 151 DSI+A LIL+ + Sbjct: 126 DSISACLILESWFEN 140 >gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228] gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A] gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135] gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus epidermidis RP62A] gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135] gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU045] gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU028] Length = 142 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + +L+ I + +I Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 142 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74 I +D+G+K +G+A+SD A + ++ +L I E+ +IG Sbjct: 4 HKIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN S G R ++ + ++ + V WDERL+T++A++ L++ +VSR KR + Sbjct: 64 LPKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKK 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD + Sbjct: 124 VIDKMAAVFILQGYLDSLQ 142 >gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202] gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202] Length = 140 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + + D GT IG A+ A P + ++ I ++GLP Sbjct: 3 KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P + F + + + + +P DERLTTV A+ + + + KV Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121 Query: 137 DSIAAALILQEVLDR 151 D+I+A LIL+ + Sbjct: 122 DAISACLILESWFEN 136 >gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 143 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G++ +G++ISDP A + + + L I +N ++GL Sbjct: 2 RILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN SEGPR ++R + +I+ +P F DERLTTV A+++LI + N+SRKKR + Sbjct: 62 PKNMNNSEGPRAEASRNYA-KLIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRKK 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D IAA ILQ LD L Sbjct: 121 VIDKIAAEFILQNYLDSKGKL 141 >gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis SH0165] gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction endodeoxyribonuclease [Haemophilus parasuis SH0165] Length = 138 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GT IG A+ A P + ++ I ++GL Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P + F + + + + +P DERLTTV A+ + + + K Sbjct: 62 PLNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120 Query: 136 VDSIAAALILQEVLDRIS 153 VD+I+A LIL+ ++ S Sbjct: 121 VDAISACLILESWFEQQS 138 >gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 142 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + +L+ I + +I Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + D + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis 101-4-CHN] gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis 101-4-CHN] Length = 146 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 + +D+G+K +G+A SDP A + + + + + +A F++GL Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV ++R + + R +P F DERLTTV A ++L+ + +VSR+K+ + Sbjct: 62 PKNMNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQKK 121 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA+LILQ LDR L Sbjct: 122 VIDELAASLILQNYLDRHGKL 142 >gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae COH1] gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae COH1] Length = 136 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + L + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++ + + + +P + DERLTTV A+++L++ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQVYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119 Query: 137 DSIAAALILQEVLDRI 152 D +AA LILQ LDR+ Sbjct: 120 DKLAAQLILQNYLDRM 135 >gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597] gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564] gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564] gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597] Length = 136 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + ++ Q + + T + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis 05HAS68] gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3] gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14] gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3] Length = 136 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + +K L + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYG-DLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes MGAS315] gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 136 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + +K L + + F+IGLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR + + Sbjct: 61 NMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ L+R Sbjct: 120 DKLAAQLILQNYLNR 134 >gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] Length = 144 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G++ +G+A+SD A + + + + + F++ Sbjct: 1 MGRILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132 GLP NMN + GPRV ++RA+ ++ +P F DERLTTV A+++LI + + SRKKR Sbjct: 61 GLPKNMNNTSGPRVDASRAYGE-LLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKR 119 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 + +D +AA LILQ LDR L Sbjct: 120 KKVIDKLAAGLILQNYLDRKGSL 142 >gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae Sd197] gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11] gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185] gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11] gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185] gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B] gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3] Length = 138 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans JCM 2831] gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans JCM 2831] Length = 170 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ I + + IDLGTK IGLA+SD GR+ A P + R K T A L Sbjct: 1 MNFDAIRAFAAESRGGARLIGIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLA 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + ++GLPLNM+GSEGPRV STRAF+ N+ + +P VF+DERL+T + Sbjct: 61 ALCRQHAVGGLVVGLPLNMDGSEGPRVQSTRAFMRNLAP-ILPLPHVFFDERLSTAVVTR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 LI+ + SR +R Q VD +AAA ILQ LD + L Sbjct: 120 ALIEADASRARRGQLVDKLAAAYILQGCLDVMRNL 154 >gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583] gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA] gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583] gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA] Length = 144 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K IG+AISDP A + R+ K+ ++ + ++ ++G Sbjct: 2 RIMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R + + +R++ +P V WDERLTTV A + L++ V R+ R + Sbjct: 62 FPKNMNNTIGERAEKSLQLKEAL-ERRLGLPVVMWDERLTTVEANRTLMETGVRRENRGK 120 Query: 135 KVDSIAAALILQEVLD 150 VD IAA ILQ LD Sbjct: 121 YVDMIAAVFILQGYLD 136 >gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens DSM 19370] gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens DSM 19370] Length = 155 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I + +L + +D GTK IG+A+ D G RFA P L R+K Q E++ Sbjct: 1 MITTAIGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I ++ +IGLPLNM+GSE PR + RA N+ D + +P + WDER TT +A++ Sbjct: 61 GIIAQRSVRGIVIGLPLNMDGSESPRSQAARAMARNLAD--LALPTLLWDERWTTQAAER 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +I ++SR KR +++D+ AAALILQ +D ++ Sbjct: 119 AMIAQDMSRAKRAERIDAHAAALILQGAIDALA 151 >gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna ACS-171-V-Col3] gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4] gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna ACS-171-V-Col3] gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4] Length = 137 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G + IG+AISDP A + RK + + I + ++ I+GL Sbjct: 1 MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR Sbjct: 61 PKNMNNTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119 Query: 136 VDSIAAALILQEVLD 150 +DS+AA ILQ LD Sbjct: 120 IDSVAATYILQTYLD 134 >gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC 35311] gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC 35311] Length = 140 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+A+SD A + +K L I F+IGLP Sbjct: 1 MGLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN S GPR ++ AF + + +P V+ DERLTTV A+++LI+ + SR KR + + Sbjct: 61 NMNNSIGPRAEASLAFGEKLQE-LFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVI 119 Query: 137 DSIAAALILQEVLDRISF 154 D +AA +ILQ LD Sbjct: 120 DKLAAVMILQNYLDSQKH 137 >gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus pseudintermedius HKU10-03] gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus pseudintermedius HKU10-03] gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus pseudintermedius ED99] Length = 142 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G++ +G+AISD A + ++ L+ I EN+ +I Sbjct: 3 KHKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + +R + + WDERL+T++A++ L++ +VSR KR Sbjct: 63 GLPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD ++ Sbjct: 123 KVIDKMAAVFILQGYLDGLN 142 >gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus flagellatus KT] gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT] Length = 146 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 + + D G KRIG+AI + AHP + + + + I Sbjct: 5 AASSRGCVLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEML 64 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP +NG E R F + + + +P DERL++ A Q L +S +K Sbjct: 65 VVGLPSYLNGDEHALTQLCRKFARRL-EGRFNLPVQLVDERLSSAEASQTLKQSGISGRK 123 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ D ++ Sbjct: 124 QKSVLDQVAAQHILQSYFDGLA 145 >gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321] Length = 136 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + ++ Q + + T + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFDLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA] gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA] Length = 138 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+A+SD A P + RK K+ +T + + + ++G Sbjct: 2 RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R + Sbjct: 62 YPKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA++ILQ LD + Sbjct: 121 VIDQVAASMILQGYLDSL 138 >gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198] gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198] Length = 139 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + D GTK IG+AI A P K ++ I ++GL Sbjct: 3 NKTVMGFDFGTKSIGVAIGQEITGTARPLASFKAKDGIPDWAQIEKIIKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F + + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQLVTAQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFERGGYRSLDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 138 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+AI A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402] gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 139 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77 +D+G+K IG+A+SD A L + + L I T N+ +IGLP Sbjct: 5 IGLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPK 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GP ++ F + + + WDERL+TV A++ L++ +VSRKKR Q +D Sbjct: 65 NMNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVID 124 Query: 138 SIAAALILQEVLDR 151 +AA ILQ L+ Sbjct: 125 KMAAVFILQGYLNS 138 >gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99] gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99] Length = 140 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q S D GTK IG+AI A P L + + + + ++GL Sbjct: 3 SQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGSEQPLTARARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121 Query: 136 VDSIAAALILQEVLDR 151 VDS++A +IL+ + Sbjct: 122 VDSLSAVIILESWFEN 137 >gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus RF122] gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122] Length = 142 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G++ +G+AISD A + + +L+ I N+ +I Sbjct: 3 QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRI 152 Q +D +AA ILQ LD + Sbjct: 123 QLIDKMAAVFILQGYLDSL 141 >gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS 2060] gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS 2060] Length = 163 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 1 MSILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59 M+ +S + + +DLGTK IGLA+SD GRR A P + R K T A +L Sbjct: 1 MNRESFARFAESSRAGGARLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKL 60 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 + +IGLPLNM+GSEGPR STRAFV N+ + +P + +DERL+T + Sbjct: 61 AGIARQHGVGGLVIGLPLNMDGSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVT 119 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + L++ + SR +R VD +AAA ILQ LD ++ L Sbjct: 120 RTLLEADASRARRGDLVDKLAAAYILQGCLDVLAGL 155 >gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 140 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G++ +G+A+SDP A + + L + ++ F++GLP Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + + Sbjct: 61 NMNNTIGPRAEASMAYGAA-IEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVI 119 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 120 DKLAAVMILQNYLD 133 >gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S] gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S] Length = 156 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%) Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 MSIL + ++L + +D+GTK IG+A+ D G A P + R K ++ + Sbjct: 1 MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T + Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 + L++ + SR +R + VD +AA+ ILQ +D + Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAIDGL 152 >gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC 29220] gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC 29220] Length = 138 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + S D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 142 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A + + L+ I +N+ +I Sbjct: 3 KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD + Sbjct: 123 KVIDKMAAVFILQGYLDSLQ 142 >gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 140 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G++ +G+A+SDP A + + L + + F++GLP Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPR ++ A+ I+ + +P + DERLTTV A+++L++ N SR KR + + Sbjct: 61 NMNNTIGPRAEASLAYGKA-IEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVI 119 Query: 137 DSIAAALILQEVLD 150 D +AA +ILQ LD Sbjct: 120 DKLAAVMILQNYLD 133 >gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661] gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661] Length = 140 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+AI A P L + T ++ + + ++GLPL Sbjct: 5 TLLAFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F N I + V DERL+TV A+ L + R VD Sbjct: 65 NMDGTEQPLTARARKFA-NRIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGSVD 123 Query: 138 SIAAALILQEVLDR 151 S++A +IL+ + Sbjct: 124 SLSAVIILESWFEN 137 >gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp. IMCC9063] gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp. IMCC9063] Length = 156 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 +L D K + + ID G + +G+AI DP A P + KK+ EL Sbjct: 6 LLENSDFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDKI 65 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I NI ++G P+NM+G+EGPR ST+ FV N+I ++P WDERL++V A + + Sbjct: 66 IIENNIKGIVVGHPINMDGTEGPRSQSTKDFVKNIIK-HTHLPVTLWDERLSSVGAFKSM 124 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 D+ ++ + K+D +AA ILQ +D + Sbjct: 125 QDLGINSSSKKDKLDENSAAFILQGFIDYLK 155 >gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola ACS-139-V-Col8] gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola ACS-139-V-Col8] Length = 145 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74 + I +D+G+K +G+A+SD A + + LL + + +IG Sbjct: 5 ERIVGLDVGSKTVGVAMSDLLGWIAQGLETIRIDEEAGDFGFDRLLELLDQHQVKKVVIG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133 LP NMN + GPR +++ + ++D + + + DERLTT A+++L+ + NVSR KR Sbjct: 65 LPKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRSKRK 124 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA +ILQ LD S Sbjct: 125 KVIDKLAAVIILQNYLDANS 144 >gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1] gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1] Length = 156 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%) Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 MS+L + ++L + +D+GTK IGLA+ D G A P + R K ++ + Sbjct: 1 MSLLTADRALFREALPHGGRLIGLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIA 60 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T + Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 + L++ + SR +R + VD +AA+ ILQ +D + Sbjct: 119 TRTLLEADASRARREELVDKLAASYILQGAIDGL 152 >gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae INV104] Length = 136 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + ++ Q + + T + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 138 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+AI A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 136 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + Q + + + F++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + + Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119 Query: 137 DSIAAALILQEVLDR 151 D +AA LILQ LDR Sbjct: 120 DKLAAQLILQNYLDR 134 >gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87] gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87] Length = 142 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A + ++ EL+ I + +I Sbjct: 3 QHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEELVDIIKKNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6] gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6] Length = 148 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q + +D+G +RIG+A+SD A P + +Q + + + ++GL Sbjct: 3 EQRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL + G GP+ TR+F + +R+V +P + +DER TT A+Q+L +M V +KR Q+ Sbjct: 63 PLTLRGEIGPQAEQTRSFAQEL-ERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQ 121 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA++ILQ+ LD I Sbjct: 122 IDQVAASIILQDYLDHIR 139 >gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG 18811] gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG 18811] Length = 143 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G++ +G+++SDP A + + L I + + ++GL Sbjct: 2 RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN SEGPR + R + M++ + +P F DERLTTV A+++LI + +VSRKKR Q Sbjct: 62 PKNMNNSEGPRAEAARNYA-KMVEERFELPTDFQDERLTTVQAERMLIEEADVSRKKRKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 121 VIDKIAAEFILQNYLD 136 >gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503] gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503] Length = 158 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P P+ +D G+K IG+A+S P RR A P + R K + A L + + IIG Sbjct: 13 PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +PLNM+GSEGPR S R F N+ R +P +WDERL++V+A++ L+ + SR +R + Sbjct: 73 VPLNMDGSEGPRAQSARTFGRNLSQRGP-LPVAYWDERLSSVAAERALLATDTSRARRAE 131 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA ILQ LDR++ Sbjct: 132 VIDAHAATHILQGALDRLA 150 >gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus ATCC 51172] gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus ATCC 51172] Length = 139 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G K IG+A+SDP A P + R K + +I+ ++GL Sbjct: 1 MSRIMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ +FV ++I +++ V+ DERLTT+ ++ +LIDM+V R+ R Sbjct: 61 PKNMNNTMGPQSMRIISFV-DLIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAH 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA+ ILQ LDR + Sbjct: 120 IDKIAASFILQTYLDRRN 137 >gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM 15952] gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM 15952] Length = 145 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SDP A + + + I F++GL Sbjct: 2 RIMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPR ++ ++ + ++ +P + DERLTTV A+++LI+ N SR KR + Sbjct: 62 PKNMNNTIGPRAEASMSYGEKL-EQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAVMILQNFLD 136 >gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1] gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1] Length = 138 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P L + T + +T A I+GL Sbjct: 2 SGTLIAFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L + R + Sbjct: 62 PLNMDGTEQPLTARARKFANKLHGR-FGVKIELHDERLSTVEARAGLFEHGGYRALNKGR 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814] gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814] Length = 150 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALEL 59 M+IL ++ L P P+ +D GTK IG+A +D R A P + + KK+ L Sbjct: 1 MAILELDQ----LPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 +IGLP+NM+GS GPRV + RA N+++++ VP FWDERL+T + + Sbjct: 57 FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + L++ + SR KR + +D +AAA ILQ +DR+S Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLS 149 >gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662] gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662] Length = 138 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+A+SD A P + RK K+ +T + + ++G Sbjct: 2 RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R + Sbjct: 62 YPKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKK 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +AA++ILQ LD + Sbjct: 121 VIDQVAASMILQGYLDSL 138 >gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640] gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 151 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ + S Sbjct: 124 VLDQVAAQAILQSFFEGGS 142 >gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20] gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20] Length = 143 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SDP A + + + L I + ++GL Sbjct: 2 RLLGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN SEGPR + R + M++ + +P F DERLTTV A+++L+ + +VSRKKR Q Sbjct: 62 PKNMNNSEGPRAEAARQYAQ-MVEDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 121 VIDKIAAEFILQNYLD 136 >gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a] Length = 147 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73 + +D+G++ +G+A+SD A + + Q + + + F++ Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132 GLP NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 + +D +AA+LILQ LD L Sbjct: 120 KKVIDKLAASLILQNYLDAKGKL 142 >gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum ATCC 14931] gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum ATCC 14931] Length = 145 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 82/141 (58%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A SDP A + + + + + + +A F++GL Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + Sbjct: 62 PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA LILQ LDR L Sbjct: 121 VIDELAATLILQNYLDRHGKL 141 >gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685] gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685] Length = 151 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ + S Sbjct: 124 VLDQVAAQAILQSFFEGGS 142 >gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase Length = 147 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73 + +D+G++ +G+A+SD A + + Q + + + F++ Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132 GLP NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 + +D +AA+LILQ LD L Sbjct: 120 KKVIDKLAASLILQNYLDAKGKL 142 >gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 140 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 2/137 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G K IG+AISDP A + R + LE+ + ++G P Sbjct: 2 RTIGLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMNG+ G + FV + +++ +P + WDERLTTV A ++LI+ ++ R KR + + Sbjct: 62 NMNGTIGSQGQKVINFVEVL-KKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKVI 120 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD Sbjct: 121 DKLAATIILQGYLDHKR 137 >gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC 43768] gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC 43768] Length = 151 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA ILQ + S Sbjct: 124 VLDQVAAQAILQSFFEGGS 142 >gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus Lc 705] gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705] gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus MTCC 5462] Length = 144 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SDP A + + Q L +T + AF++GL Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 62 PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAQMILQNYLD 136 >gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 145 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A SDP A + + + + + + +A ++GL Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + Sbjct: 62 PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA LILQ LDR L Sbjct: 121 VIDELAATLILQNYLDRHGKL 141 >gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] Length = 142 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A + ++ +L+ I + +I Sbjct: 3 KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC 334] gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23] gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang] gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334] gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23] gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang] gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W] gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II] Length = 144 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SDP A + + + L + + AF++GL Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN S GPR ++A+ ++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 62 PKNMNNSIGPRAEKSQAYGE-LLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAQMILQNYLD 136 >gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L] gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L] Length = 143 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 71/133 (53%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G+K IG+A SD A + RK L + T + ++G P Sbjct: 4 RILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPR 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG + V AF+ + + + FV+WDERLTT+ A+Q+L+ V R+KR Q VD Sbjct: 64 HMNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQFVD 123 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 124 KMAAILILQNYLD 136 >gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis 29755] gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis 29755] Length = 138 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GT IG A+ A + ++ I ++GL Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLSAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P + F + + + +P DERLTTV A+ + + + K Sbjct: 62 PLNMDGTEQPLTQRAKKFAKRL-NGRFNLPVELQDERLTTVEAKSEIFTRGGFKALKKGK 120 Query: 136 VDSIAAALILQEVLDRIS 153 VD+I+A LIL+ ++ S Sbjct: 121 VDAISACLILESWFEQQS 138 >gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori] gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori] Length = 138 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+AI A P P L + T + + I+GLPL Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F N I + V DERL+TV A+ L + R KVD Sbjct: 64 NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVD 122 Query: 138 SIAAALILQEVLDR 151 S +A +IL+ ++ Sbjct: 123 SASAVIILESYFEQ 136 >gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp. hominis C80] gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp. hominis C80] Length = 142 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73 I +D+G++ +G+AISD A L + + L+S I N+ + +I Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC 27405] gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM 2360] gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20] gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC 27405] gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM 2360] gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20] gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM 1313] Length = 141 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLP 76 + ID G RIG+AISDP A + R V + + + I+G P Sbjct: 2 RVLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGFP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NM+G+ G R T F+ + R + + WDERLTTV+A + + +M + + K+ V Sbjct: 62 KNMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLVV 121 Query: 137 DSIAAALILQEVLDR 151 D IAA ILQ LD Sbjct: 122 DQIAAVYILQGYLDS 136 >gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 138 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + S D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii ACS-065-V-Col13] Length = 139 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G K IG+A+SDP A + + RKK + LL I ++ ++GL Sbjct: 1 MSRIMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ +FV +++ ++ V V+ DER+TT+ ++ +LIDM V R+ R Q Sbjct: 61 PKNMNNTIGPQSMKVMSFV-DLLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQY 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA ILQ LDR Sbjct: 120 IDKIAATFILQTYLDRRK 137 >gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 137 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT IG A+ A P + ++ I ++GLP Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P + F + + + + +P DERLTTVSA+ + + + + KV Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121 Query: 137 DSIAAALILQEVLD 150 DSI+A LIL+ + Sbjct: 122 DSISACLILESWFE 135 >gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956] gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956] Length = 145 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A SDP A + + + + + + +A F++GL Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + Sbjct: 62 PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 121 VIDELAATLILQNYLD 136 >gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] Length = 147 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73 + +D+G++ +G+A+SD A + + Q + + + F++ Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132 GLP NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 + +D +AA+LILQ LD L Sbjct: 120 KKVIDKLAASLILQNYLDARGKL 142 >gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens 16/4] Length = 142 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFI 72 I +D GTK +G+AISDP A + R++ + T + + + I Sbjct: 1 MSRILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKII 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P NM+ SEG R T F +++++V +P DERLTTV A +IL + V++K R Sbjct: 61 LGYPRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDR 119 Query: 133 IQKVDSIAAALILQEVLDR 151 + +D IAAA+ILQ+ LD Sbjct: 120 KKVIDQIAAAIILQDYLDN 138 >gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 138 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+AI A P P + + T + + I+GLPL Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F N I + V DERL+TV A+ L + R KVD Sbjct: 64 NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122 Query: 138 SIAAALILQEVLDR 151 S +A +IL+ ++ Sbjct: 123 SASAVIILESYFEQ 136 >gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus HN001] gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus GG] gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus HN001] gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG] gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus GG] Length = 144 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SDP A + + Q L +T + AF++GL Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 62 PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAQMILQNYLD 136 >gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 138 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+AI A P P + + T + + + I+GLPL Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F N I + V DERL+TV A+ L + R KVD Sbjct: 64 NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122 Query: 138 SIAAALILQEVLDR 151 S +A +IL+ ++ Sbjct: 123 SASAVIILESYFEQ 136 >gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] Length = 144 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SDP A + + Q L +T + AF++GL Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q Sbjct: 62 PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 121 VIDKLAAQMILQNYLD 136 >gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906] gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906] Length = 139 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + D GTK IG+AI A P K ++ I ++GL Sbjct: 3 NRTVMGFDFGTKSIGVAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F + + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQLVTTQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFEQGGYRSLDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ +R Sbjct: 122 VDATSAVIILESWFER 137 >gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM 1131] gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM 1131] Length = 139 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P L ++ + I+GL Sbjct: 3 GRTLLAFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N I + V DERL+TV A+ L + R K Sbjct: 63 PLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKGK 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 122 VDSASAVVILESWFEQ 137 >gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4] gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4] Length = 140 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 +D+G+K +G+A+SDP A + + + + I + +IGL Sbjct: 2 RTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQ 134 P NMN S GPR ++ + +I +P + DERLTTV A+++LI+ SR KR + Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA +ILQ L++ Sbjct: 121 VIDKVAAVMILQNYLNQ 137 >gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB] gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB] Length = 150 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D G KRIG+A+ D A ++RK + S + T ++ +IG PL Sbjct: 2 RILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G+EG + F + + + +P + WDE LTT A++IL V +KR VD Sbjct: 62 RLDGTEGIQCEKVVRFARRL-EAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA+LILQ LD IS Sbjct: 121 RLAASLILQSYLDAIS 136 >gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis 315-B] gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis 315-B] gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 147 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G K IG+AISD A P + R + ++ I ++ ++GLP Sbjct: 3 RVLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPK 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMN + GP + F + ++ + V+ DER+TT+ A+ +L++ +V R+ R + VD Sbjct: 63 NMNNTLGPTCQMVQKFSEKLKNK-FRLELVYVDERMTTLMAKDVLMEASVRRENRKKYVD 121 Query: 138 SIAAALILQEVLDR 151 IAAA IL+ +D Sbjct: 122 KIAAAFILKTYMDS 135 >gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC 3773] Length = 143 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SDP A + + L I + + ++GL Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN SEGPR + R + M++ +P F DERLTTV A+++LI + ++SRKKR Q Sbjct: 62 PKNMNNSEGPRAEAARRYA-KMVEETFGLPTDFQDERLTTVQAERMLIEEADISRKKRKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 121 VIDKIAAEFILQNYLD 136 >gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae L20] gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 137 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT IG A+ A P + ++ I ++GLP Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE P + F + + + + +P DERLTTVSA+ + + + + KV Sbjct: 63 LNMDGSEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121 Query: 137 DSIAAALILQEVLD 150 DSI+A LIL+ + Sbjct: 122 DSISACLILESWFE 135 >gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 142 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73 I +D+G++ +G+AISD A L + + L+S I N+ + +I Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM 2228] Length = 135 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G KR+G+A+SD A P L + +E+ +I ++ I+G+P Sbjct: 2 RILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N++GS G R T+AF+ N ++ ++ +P DERLTT AQ IL++ +VSR+ R + +D Sbjct: 62 NLDGSRGKRAEITQAFI-NFLNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVID 120 Query: 138 SIAAALILQEVLDRI 152 +AA+LILQ LD + Sbjct: 121 KLAASLILQSYLDSL 135 >gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627] gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627] Length = 138 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4] gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4] Length = 157 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G +RIG+AISD A P L R + + A + GLPL Sbjct: 13 RIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHEATAIVAGLPL 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +M+G P+ ++AF + R +P FWDERLT+ +A +IL R +D Sbjct: 73 HMSGDLSPQAQKSQAFAQELAKR-TGLPLYFWDERLTSHAAHEILDVSGFGTTGRKAVID 131 Query: 138 SIAAALILQEVLD 150 +AA LILQ LD Sbjct: 132 QVAAVLILQGFLD 144 >gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU 11154] gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU 11154] Length = 143 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SDP A + + + L I + ++GL Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN SEGPR ++R + M+ K +P F DERLTTV A+++LI + N+SRKKR Q Sbjct: 62 PKNMNNSEGPRAEASRLYA-KMVQDKFNLPIDFQDERLTTVQAERMLIEEANISRKKRKQ 120 Query: 135 KVDSIAAALILQEVLD 150 +D IAA ILQ LD Sbjct: 121 VIDKIAAEFILQNYLD 136 >gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum marinum IMCC1322] Length = 159 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I + D+ +S+ Q + +D+G K IGLA+SD G + A P L R K T EL Sbjct: 1 MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +N+ ++G P+NM+GS GPR STR F + ++ R VP F DERL+T + + Sbjct: 61 KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFAYALM-RIRDVPVFFQDERLSTQAVES 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 +I +++R KR + D++AA ILQ LD I Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151 >gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b] gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b] Length = 138 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+A+ A L + T ++ + ++GL Sbjct: 3 SETLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE R F + + R V DERL+TV A+ L + R + Sbjct: 63 PLNMDGSEQELTARARKFANRLHGR-FGVRVELQDERLSTVEARAGLFERGGYRALQKGA 121 Query: 136 VDSIAAALILQEVLD 150 VDS +A +IL++ D Sbjct: 122 VDSQSAVIILEDWFD 136 >gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM 2782] gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM 2782] Length = 142 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76 I ID G RIG+AISDP A + K+ + + L L I + +IG P Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +NMNG++GPR T F+ + D + WDERLTTVSA + + ++ + K+ V Sbjct: 62 INMNGTKGPRTERTEEFIKKISD-FGEFNIIKWDERLTTVSAHRTMNELGIKASKKKDIV 120 Query: 137 DSIAAALILQEVLDRIS 153 D+++A LILQ LDR++ Sbjct: 121 DTMSAVLILQGYLDRMA 137 >gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501] gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501] Length = 143 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + RK Q +L + +T N+ ++GLP M Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVVGLPYCM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F I + + +P + DERLT+V A+ L + VD + Sbjct: 67 DGSIGFQAKQVQKFAKR-ISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNKGLVDRL 125 Query: 140 AAALILQEVLDRISF 154 AA +ILQ+ LD+ Sbjct: 126 AATIILQQWLDQRRA 140 >gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp. cremoris MG1363] gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp. cremoris MG1363] gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 143 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+++SD A P + L I ++GL Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R ++R + + ++ + + DERLTT A+++LID V RK R + Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANK-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 123 IDKLAAVLILQNYLD 137 >gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC 23970] gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC 23970] Length = 151 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAESLLSEARVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D AA ILQ + Sbjct: 124 VLDQAAAQAILQSFFE 139 >gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929] gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929] Length = 144 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD + + + + + + + F++GL Sbjct: 2 RLMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN S GPR +++ + + D+ +P F DERLTTV AQ++L + +VSR KR + Sbjct: 62 PKNMNNSLGPRAEASQQYGKRLEDK-FNLPVDFEDERLTTVEAQRMLTEEADVSRAKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA LILQ LDR Sbjct: 121 VIDKLAAGLILQNYLDR 137 >gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM 2876] gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM 2876] Length = 144 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 4/144 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G++ +G+A+ DP A + RK K+ QT + N ++G Sbjct: 2 RIIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP NMN + G RV T F + +R+ + V WDERLTTV+A +++ + R+ R + Sbjct: 62 LPKNMNNTSGDRVDKTMDFKAAL-ERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRKE 120 Query: 135 KVDSIAAALILQEVLDRISFLESS 158 VD IAA LILQ LD ++ + Sbjct: 121 YVDMIAAQLILQGYLDSLAAEQKG 144 >gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10] gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar Microtus str. 91001] gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua] gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516] gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides F] gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125] gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis IP 31758] gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola] gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. F1991016] gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. IP275] gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1] gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis YPIII] gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92] gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A] gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. India 195] gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516] gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27] gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003] gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10] gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Yersinia pestis biovar Microtus str. 91001] gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516] gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua] gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F] gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125] gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia pseudotuberculosis IP 31758] gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola] gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. IP275] gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. F1991016] gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. B42003004] gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis YPIII] gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516] gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. India 195] gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A] gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004] gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038] gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27] gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003] gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 140 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG+AI A + T ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQPLTARARRFANRLHGR-FGVQVALQDERLSTVEARANLFDRGGYRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ D Sbjct: 122 VDAASAVIILESWFDE 137 >gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM 12680] gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM 12680] Length = 144 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D G KRIG+AISD A P + R + + T + ++GLPL Sbjct: 2 RILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N+NGS G + + + + + WDERL+T + Q +L++ + SR+KR + VD Sbjct: 62 NLNGSRGEKAAQSAKLAQEL-KEHLSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVVD 120 Query: 138 SIAAALILQEVLDRI 152 +AAA ILQ LDRI Sbjct: 121 KLAAAYILQGYLDRI 135 >gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium cellulolyticum H10] gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10] Length = 142 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76 I ID G RIG+AISDP A + K + + L L I ++ +IG P Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +NMNG++GPR T F+ + D + WDERLTTVSA + + ++ + K+ V Sbjct: 62 INMNGTKGPRTERTEEFIKKISD-LGQFNIIKWDERLTTVSAHRTMNELGIKASKKKGIV 120 Query: 137 DSIAAALILQEVLDRIS 153 D+++A LILQ LDRI+ Sbjct: 121 DTMSAVLILQGYLDRIA 137 >gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str. 'morsitans'] gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 141 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 I + D GT+ IG+AI A P + ++ + ++GLP Sbjct: 5 GSIMAFDFGTRSIGVAIGQRVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETVVVGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE P R F + M R V V DERL+TV A+ L + R KV Sbjct: 65 LNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALEKGKV 123 Query: 137 DSIAAALILQEVLDR 151 D+ +A +IL+ L++ Sbjct: 124 DAGSAVIILESWLEQ 138 >gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912] gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912] Length = 157 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G RIG+A+SDP A L + I + ++GL Sbjct: 1 MSRILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+ S G + T F + R V VP WDERLTTV A++ LID + R +R + Sbjct: 61 PRNMDASLGAQGRYTEEFAEKLRHR-VRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKV 119 Query: 136 VDSIAAALILQEVLD 150 VD +AA ++LQ LD Sbjct: 120 VDQVAATVLLQSYLD 134 >gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum DSM 5476] gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum DSM 5476] Length = 145 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G R GLA+ D A P + + + ++ ++G P Sbjct: 2 KIMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS G R F + + +P WDER TTVSA Q L ++NV +KR + VD Sbjct: 62 NMDGSCGERAKKCEEFAKRL-GEMIPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA +IL+ L+ Sbjct: 121 EVAATIILESYLEYRK 136 >gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3] gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3] Length = 130 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 GTK +G+A+SD A + ++ + + N+ ++GLP NMNG+ Sbjct: 2 GTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNGT 61 Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142 GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +D +AA Sbjct: 62 IGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAV 120 Query: 143 LILQEVLDR 151 +ILQ LD Sbjct: 121 VILQGFLDS 129 >gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC 51888] gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC 51888] Length = 166 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 ++ + + + + ID GTK +GLA+SD R A + R K T A LL+ T Sbjct: 18 QEFIAAATASGRLIGIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALATEH 77 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 + ++GLP N++G+EGPR +TRA N+ ++ +P + WDERLTT A+++LID + Sbjct: 78 GVTGLVLGLPRNLDGTEGPRAQATRALARNL-NKLSPLPILLWDERLTTAEAERMLIDAD 136 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRI 152 SRK+R + +D +AA +ILQ LDR+ Sbjct: 137 QSRKRRGEVIDKLAATIILQSALDRL 162 >gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus lugdunensis M23590] gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus lugdunensis M23590] Length = 142 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 2/140 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + + +L + I + N+ +I Sbjct: 3 QHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + +++ + + WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIHYKELILEAMPDMKVIMWDERLSTMAAERSLLEADVSRQKRK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD I Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142 >gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909] gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1] gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909] gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1] Length = 143 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75 I +DLGT+ G+AISD AH ++ + + + T I+ ++GL Sbjct: 2 KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMNGS G R T+ F + + V + WDERLTT+ +++LI +VSR KR + Sbjct: 62 PKNMNGSIGERGQVTQEFAKKL-EEATNVTVILWDERLTTMQVERVLIQADVSRNKRKKV 120 Query: 136 VDSIAAALILQEVLDR 151 VD +AA +ILQ LD Sbjct: 121 VDKMAATIILQSYLDS 136 >gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1] gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1] Length = 156 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 2 SILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59 SI L + KPN + + D GT RIG+AI A P L K+ E+ Sbjct: 4 SISTGTSLDDNQKPNTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEI 63 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 + AF++GLPL+M+GSE R F + R +P+ DERL++ A+ Sbjct: 64 TRIVEEWKPDAFVVGLPLDMDGSENEMCQRARKFAKRLHGR-FNLPYHMMDERLSSYEAK 122 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149 +I +R + VD +AA +IL+ Sbjct: 123 GQVIARGGNRNFKENSVDGLAAQMILETWF 152 >gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica W22703] Length = 140 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG+AI A + T ++ + ++GL Sbjct: 3 NRTIVAFDFGTKSIGVAIGQEVTGTARALTSFKAQDGTPDWQKVEKLLKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQPLTARARRFANRLHGR-FGVQIALQDERLSTVEARANLFDSGGYRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ D Sbjct: 122 VDAASAVIILESWFDE 137 >gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis IP 32953] gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia pseudotuberculosis PB1/+] gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia pseudotuberculosis IP 32953] gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis PB1/+] Length = 140 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG+AI A + T ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQPLTARARRFANRLHGR-FGVQIALQDERLSTVEARANLFDRGGYRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ D Sbjct: 122 VDAASAVIILESWFDE 137 >gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703] gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703] Length = 139 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + T ++ + + I+GL Sbjct: 3 NRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPITARARKFAQRLHGR-FGVAIQLHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD+ +A +IL+ ++ S Sbjct: 122 VDAASAVIILESWFEQQS 139 >gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7] gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7] Length = 140 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 +D+G+K +G+A+SDP A + + + + I + +IGL Sbjct: 2 RTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQ 134 P NMN S GPR ++ + ++ +P + DERLTTV A+++LI+ SR KR + Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LVKETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA +ILQ L++ Sbjct: 121 VIDKVAAVMILQNYLNQ 137 >gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae 342] gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae 342] Length = 138 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A+ A P P L + + + A I+GL Sbjct: 2 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + V V DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARNFANK-IHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi 35000HP] gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 138 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D GT IG A+ + A + + I ++GLPL Sbjct: 4 TILAFDFGTYSIGCAVGQSITKTAQSLTAFKSQDGIPNWQHIEKIIKEWQPDLLVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSE P R F + + + + +P DERLTT A+ + + + K+D Sbjct: 64 NMDGSEQPLTQRARKFANRL-NGRFNLPVALQDERLTTTEAKSEIFSRGGYKALKKDKID 122 Query: 138 SIAAALILQEVLDR 151 +I+A LIL+ D Sbjct: 123 TISACLILESWFDN 136 >gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147] gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147] Length = 143 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+++SD A P + L I ++GL Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R + Sbjct: 64 PKHMNGDEGVRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 123 IDKLAAVLILQNYLD 137 >gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56] Length = 143 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+++SD A P + L I ++GL Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R + Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 123 IDKLAAVLILQNYLD 137 >gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1] gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163] gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429] gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1] gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163] gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429] Length = 144 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A SDP A + + L I+ + ++ +IGL Sbjct: 2 RLLGLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPRV ++R + M+ + +P + DERLT+V A ++LI + ++SR KR + Sbjct: 62 PKNMNNTEGPRVEASRNYG-KMVSERFGLPIDYQDERLTSVEANRMLIEEADLSRAKRKK 120 Query: 135 KVDSIAAALILQEVLDRISFLESS 158 +DS+AA LILQ LD+ L + Sbjct: 121 VIDSLAAQLILQNYLDKKGRLTNG 144 >gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22] gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55] gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22] gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55] Length = 139 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A+ A P P L + + + A I+GL Sbjct: 3 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + V V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARNFANK-IHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 122 VDSASAVVILESYFEQ 137 >gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 151 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 124 VLDQVAAQAILHGFFE 139 >gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii ATCC BAA-894] gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894] Length = 138 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+AI A P + + + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARTFANRLHGR-FGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius UCC118] gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius UCC118] Length = 143 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G++ +G+A+SD A + + Q + + + F++GLP Sbjct: 1 MGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR + + Sbjct: 61 NMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVI 119 Query: 137 DSIAAALILQEVLDRISFL 155 D +AA+LILQ LD L Sbjct: 120 DKLAASLILQNYLDAKGKL 138 >gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58] gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58] Length = 169 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 4/154 (2%) Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 M+++ I+ ++L + +D+GTK IGLA+ D A P + R K + + Sbjct: 13 MTLVTIDRVAFRQALPHGGRLIGMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIG 72 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L +FI + + +IGLPLN++GS PR ++RAF HN+ D + +P + WDER +T + Sbjct: 73 LAAFIDQQQVKGVVIGLPLNLDGSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAV 130 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 + L++ + SR +R + VD +AA+ ILQ +D + Sbjct: 131 TRTLLEADASRARRDELVDKLAASYILQGAIDGL 164 >gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase Length = 143 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+++SD A P + L I ++GL Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R ++R + + + + + DERLTT A+++LID V RK+R + Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKS 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 123 IDKLAAVLILQNYLD 137 >gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602] gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602] Length = 142 Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GTK IGLAI A P + T ++ + ++GL Sbjct: 3 NRTVFAFDFGTKSIGLAIGQEVTGTARPLTSFKAQDGTPDWQKIEKLLKEWLPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVQVELHDERLSTVEARADLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEK 137 >gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11] gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11] Length = 143 Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+++SD A P + L I ++GL Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R + Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANE-FSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122 Query: 136 VDSIAAALILQEVLD 150 +D +AA LILQ LD Sbjct: 123 IDKLAAVLILQNYLD 137 >gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC 11862] Length = 144 Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73 + +D+G++ +G+A+SD A + + + + + F++ Sbjct: 1 MGRVMGLDVGSRTVGVAVSDLLGWTAQGVEIIRINEDEKEFGIARMKELVAQFQPTGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132 GLP NMN + GPRV + RA+ +++ +P F DERLTTV A+++L+ + + SRKKR Sbjct: 61 GLPKNMNNTSGPRVDAARAYG-DLLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119 Query: 133 IQKVDSIAAALILQEVLDR 151 Q +D +AAALILQ LDR Sbjct: 120 KQVIDKLAAALILQNYLDR 138 >gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei subsp. sakei 23K] gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei 23K] Length = 147 Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + D+G++ +G+A+SD A + + + + + F++GL Sbjct: 2 RLMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR + + + + +P + DERLTTV A+++L++ + SRKKR Q Sbjct: 62 PKNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRKQ 121 Query: 135 KVDSIAAALILQEVLD 150 +D +AA +ILQ LD Sbjct: 122 VIDKLAAVMILQNYLD 137 >gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 138 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P L T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + V DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARKFANK-IHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM 20745] gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM 20745] Length = 143 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + S +P + + ++D+G +R+G+A+SD A P + K+ L++ I + Sbjct: 1 MASSSQPGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD--RLVALIERYDP 58 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 IIGLPL M+G EGP+ +TRAF + R V P +FWDERLTT A Q LI+ Sbjct: 59 ERIIIGLPLGMSGREGPQAAATRAFAQQLRGR-VDRPIIFWDERLTTFMADQSLIEAGHR 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154 R +R Q VD++AAALILQ LD Sbjct: 118 RARRKQHVDAVAAALILQSYLDSQRA 143 >gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 139 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++ I + D GTK IG+AI A P ++ ++ ++ ++G Sbjct: 2 KSRTILAFDFGTKSIGVAIGQEITGTARPLTSFKAQEGIPDWQKVEKLLSEWQPDLVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+E P R F + + R V DERL+TV A+ L + + Sbjct: 62 LPLNMDGTEQPLTARARKFANRLHGR-FGVAIALHDERLSTVEARADLFERGGFKALDKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 121 SVDAASAVIILESWFE 136 >gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase Length = 150 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75 I +DLGTK +G+A+SD A + + L I I ++G Sbjct: 4 RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P N NG+ GPR +++ F + + VP V WDERLTT +A++ LI +VSR+KR + Sbjct: 64 PKNXNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKV 122 Query: 136 VDSIAAALILQEVLDRIS 153 +D AA ILQ LD ++ Sbjct: 123 IDKXAAVXILQGYLDSLN 140 >gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1] gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1] Length = 151 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M D +L +A +D+GT+ IG+A+ D G A P ++R K + A +L Sbjct: 1 MISASTLDFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + + +IGLPLN++GS+ PR S RAF N+ +P + WDER +T + + Sbjct: 61 ALVAAQLVKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTR 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 L+D + SR +R + VD +AAA ILQ +D + Sbjct: 119 TLLDADASRARRAELVDKLAAAYILQGAIDAM 150 >gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428] gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428] Length = 140 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ID G RIG+A+SD AHP + K+V + + +T++++ I+GL Sbjct: 1 MKRALGIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+GS GP RAF + WDERLT+V+AQ+ L + K + Sbjct: 61 PRNMDGSYGPAAEKVRAFAEKL-RAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREV 119 Query: 136 VDSIAAALILQEVLDRISFL 155 +D +AA LILQ LD + L Sbjct: 120 IDQVAAQLILQGWLDSQALL 139 >gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586] gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586] Length = 143 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + ++ + A I+GL Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARKFSQRLQGR-FGVTVELHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246] Length = 169 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 S P + +D GTKRIG+A+ DP R A P + A Sbjct: 10 SFPPRGALLGVDYGTKRIGVAVCDPDRVIASPVGTQANDATREPYFR--DLCARSKFAGV 67 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLPL+ +G E P RAF + D +P V WDER T+ +A+ L+ ++RKK Sbjct: 68 VVGLPLHASGEESPMSGEARAFARWLSD-LTGLPVVMWDERHTSFAAESALLGAGLTRKK 126 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 R +KVD +AA +ILQ +D S Sbjct: 127 RKEKVDRVAAQMILQTFIDAGS 148 >gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 142 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D G RIG+A D +HP + + + + F++GLP++ Sbjct: 1 MAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHT 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E H +R F + R +P + DERL++V A+ +L + V KKR +D + Sbjct: 61 DGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119 Query: 140 AAALILQEVLD 150 AA ILQ + Sbjct: 120 AAQAILQSFFE 130 >gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548] gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548] Length = 139 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G K IG+A+SDP ++ + RKK + + + ++ ++GL Sbjct: 1 MSRIMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ +FV +++ ++V V V+ DER+TT+ ++ +L+DM V R+ R + Sbjct: 61 PKNMNNTIGPQAMRVISFV-DLLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKY 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D IAA ILQ LDR Sbjct: 120 IDKIAATFILQTYLDRRK 137 >gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna ATCC 29328] gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC 53516] gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna ATCC 29328] gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC 53516] Length = 137 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G + IG+AISDP A + RK + + I + ++ I+GL Sbjct: 1 MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR Sbjct: 61 PKNMNNTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119 Query: 136 VDSIAAALILQEVLD 150 +DS+AA ILQ LD Sbjct: 120 IDSVAATYILQTYLD 134 >gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Oribacterium sinus F0268] gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Oribacterium sinus F0268] Length = 141 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I ++D G+K +GLAI+DP P + R+ K+ +T E+ + ++G Sbjct: 2 RILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +M+GSEG RV AF M+ +K+ +P +DERL+T+ A++IL + V + ++ + Sbjct: 62 YPCHMDGSEGERVERVLAF-QEMLKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQKE 120 Query: 135 KVDSIAAALILQEVL 149 +D +AA +IL++ L Sbjct: 121 VLDQVAAQVILEDYL 135 >gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis HTCC2594] gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594] Length = 167 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 + +L + ++DLGTK IG A SD G RFA L R + + +L +++ N Sbjct: 14 EYGDALPDGGVLLALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRN 73 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 +A ++GLP NM+GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++ Sbjct: 74 VAGLVLGLPRNMDGSEGPRAQASRAYARNLAEA-FGLPVLLWDERWSTQSAESAMIGQDM 132 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 SR KR +K+DS AAA+ LQ LD ++ Sbjct: 133 SRAKRAEKIDSHAAAIFLQAALDTLA 158 >gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae NTUH-K2044] gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 138 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A+ A P P L + + + A I+GL Sbjct: 2 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + V + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARNFANK-IHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 137 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT IG ++ A P + ++ I ++GLP Sbjct: 3 RTILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE P + F + + + + +P DERLTTVSA+ + + + + KV Sbjct: 63 LNMDGSEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121 Query: 137 DSIAAALILQEVLD 150 DSI+A LIL+ + Sbjct: 122 DSISACLILESWFE 135 >gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591] gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591] Length = 143 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + ++ + A I+GL Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVNVELHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri ATCC 11577] gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii ATCC 8290] gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri ATCC 11577] gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii ATCC 8290] gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 144 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD + + + + + + F++GL Sbjct: 2 RLMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQ 134 P NMN S GPR ++ + + ++K +P F DERLTTV AQ++L + ++SR+KR + Sbjct: 62 PKNMNNSLGPRAEASEQYGDRL-EKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKK 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA LILQ LDR L Sbjct: 121 VIDKLAAGLILQNYLDRKGKL 141 >gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC 49176] gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC 49176] Length = 140 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +DLG+K G+A++D A + RK K+ QT + + ++G Sbjct: 2 RIMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NM+GS R + F + R + + WDERLTTVSA +I+I+ + R++R + Sbjct: 62 YPKNMDGSVSKRCELSEEFAKKLTGR-TGIEVILWDERLTTVSAHEIMIEAGLKREEREK 120 Query: 135 KVDSIAAALILQEVLD 150 VD +AA IL++ ++ Sbjct: 121 IVDKVAAVFILEDYMN 136 >gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans DSM 12444] gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans DSM 12444] Length = 155 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ +L + +D GTK IG+A+ D RFA + R K ++ Sbjct: 1 MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLPLNM+GSE PR RA N+ D + +P + WDER TT +A++ Sbjct: 61 AIVAERGVKGIVIGLPLNMDGSESPRSQGARAMARNLED--LGLPILLWDERWTTQAAER 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +I+ + SR KR +++DS AAALILQ +D ++ Sbjct: 119 AMIEQDFSRAKRAERIDSHAAALILQGAIDALA 151 >gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis HLHK9] gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis HLHK9] Length = 155 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 D G RIG+A+ D AHP L + + I I+ ++GLP + Sbjct: 8 LGFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLPTHA 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ R F + R +P V DER +++ A+ +L + +K+ +D + Sbjct: 68 DGTPHEMTRLARRFAQRLHGR-FGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVLDQV 126 Query: 140 AAALILQEVLDR 151 AA +ILQ D+ Sbjct: 127 AAQVILQSFFDQ 138 >gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM 4541] gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM 4541] Length = 139 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + + D GTK IG+A+ A L ++ + I+GLP Sbjct: 4 RTLLAFDFGTKSIGVAVGQEITGTARALTSLKANDGRPDWQQIEKLLKEWQPQLVIVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E R F N I + V DERL+TV A+ L + R KV Sbjct: 64 LNMDGTEQLVTSQARNFA-NRIHGRFGVQVKLHDERLSTVEAKAGLFEQGGYRALSKGKV 122 Query: 137 DSIAAALILQEVLDR 151 DS +A +IL+ ++ Sbjct: 123 DSASAVVILESWFEQ 137 >gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis z3032] gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032] Length = 138 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+AI A P + + + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTSRARTFANRLHGR-FGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM 17565] gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM 17565] Length = 141 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P I +ID G KR G+A+SD + A+ + ++ + +I E + IIG Sbjct: 3 PMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGDYIAKEPVERIIIG 59 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 60 LPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 119 Query: 135 K--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 120 KALVDEISATIILQTYLESKRF 141 >gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus ATCC 35316] gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus ATCC 35316] Length = 138 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P L T + + I+GL Sbjct: 2 SGTLIAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + V DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARKFANK-IHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus B316] gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus B316] Length = 145 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+AISD A R + RK K+ +T + I + ++G Sbjct: 2 RIMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+ + R F I+R+ +P V WDERLTTV A +I+ + + + R + Sbjct: 62 LPLNMDQTPSERSQLCLEFKDK-IERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRKE 120 Query: 135 KVDSIAAALILQEVLDR 151 VD IAA +ILQ+ LD Sbjct: 121 YVDMIAAQIILQDYLDN 137 >gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC 3537] Length = 143 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SDP A + + + L I ++GL Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134 P NMN +EGPR + R + M++ + F DERLTTV A+++LI + +VSRKKR + Sbjct: 62 PKNMNNTEGPRAQAARDYA-KMVEDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRKK 120 Query: 135 KVDSIAAALILQEVLDR 151 +D IAA ILQ LDR Sbjct: 121 VIDKIAAEFILQNYLDR 137 >gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii ATCC BAA-1640] Length = 141 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G K IG++ISD A + R + E+ + NI ++G+P+ Sbjct: 3 RFLGLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPI 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS+ R F + + V +F DER T++ A++ LI NV R+ R + +D Sbjct: 63 NMDGSDTVMSKRIRKFARKLTPK-FGVEVIFQDERFTSIEAERTLIQSNVRRENRKKYID 121 Query: 138 SIAAALILQEVLDRIS 153 +AA++ILQ +DR++ Sbjct: 122 QLAASIILQTYIDRMN 137 >gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC 25976] gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC 25976] Length = 137 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT IG A+ A + ++ I ++GLP Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLSSFKAQDGIPNWDQIEKVIQEWLPERLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E P + F + + + + +P DERLTTVSA+ + + + + KV Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121 Query: 137 DSIAAALILQEVLD 150 DSI+A LIL+ + Sbjct: 122 DSISACLILESWFE 135 >gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703] gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703] Length = 151 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D HP + + + + F++G Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 140 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG AI A + T ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGAAIGQEITGTARALAAFKAQDGTPDWQKIEKLLKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGSEQPLTERARKFANRLHGR-FGVKIDLHDERLSTVEARSHLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 122 VDSASAVVILESWFEQ 137 >gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064] gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus ATCC 27064] gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus ATCC 27064] Length = 157 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 1/151 (0%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + SL+ + ++D+G RIG+A DP A P + + V + + + Sbjct: 1 MSSLRRGRR-LALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPI 59 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++GLP ++NG EGP R F + VP DER+TTV+A Q L V Sbjct: 60 EIVVGLPRSLNGREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKA 119 Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160 KK VD AA +ILQ L+ S G Sbjct: 120 KKGRSVVDQAAAVVILQNALESERAAGSPPG 150 >gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202] gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60] Length = 140 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT+ IG AI A P ++ + ++GLP Sbjct: 4 RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGAPDWQQIEKVLREWQPDLVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE P R F + + R V DERL+TV A+ L R +V Sbjct: 64 LNMDGSEQPLTQMARKFANRLHGR-FGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122 Query: 137 DSIAAALILQEVLDRISF 154 D+ +AALIL+ + ++ Sbjct: 123 DAASAALILESWFEHQTY 140 >gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17] gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 5/154 (3%) Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 MS++ + +L + +D+GTK IG A+ D G FA P + R K T+ Sbjct: 1 MSLITTDRSAFRDALPSGGRLIGLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEA 60 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L++ I + + +IGLPLN++GSE PR STRAF N D P + WDER +TV+ Sbjct: 61 LIAMIAQQGVKGLVIGLPLNLDGSESPRSQSTRAFARNCADLG---PILLWDERWSTVAV 117 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 ++ +I+ ++SR KR +++D++AAA ILQ +D + Sbjct: 118 ERTMIEQDMSRAKRAERIDNLAAAHILQAAIDAL 151 >gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC BAA-895] gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895] Length = 138 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+AI A P + + T + + I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+T+ A+ L + R K Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYFEQ 136 >gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 154 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 62/146 (42%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V L + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP RAF + VP DER+TTV+A Q L V KK Sbjct: 62 LPRSLKGGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ G Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147 >gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146] gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 140 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT+ IG AI A P ++ + ++GLP Sbjct: 4 RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGVPDWQQIEKVLREWQPDLVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE P R F + + R V DERL+TV A+ L R +V Sbjct: 64 LNMDGSEQPLTQQARKFANRLHGR-FGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122 Query: 137 DSIAAALILQEVLDR 151 D+ +AALIL+ + Sbjct: 123 DAASAALILESWFEN 137 >gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320] gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320] Length = 139 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + D GTK IG AI A P K ++ I ++GL Sbjct: 3 NRTVMGFDFGTKSIGAAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F + + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQLVTTQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFEQGGYRSLDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ +R Sbjct: 122 VDATSAVIILESWFER 137 >gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937] gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937] Length = 143 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GT+ IG+AI A P L + ++ + A I+GL Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + R V DERL+TV A+ L + R Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter aphrophilus NJ8700] gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700] Length = 139 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG A+ A P + + I A ++GLPL Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E + F + + R +P DERLTT A+ + R KVD Sbjct: 64 NMDGTEQELTLRAKKFANRLHGR-FNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVD 122 Query: 138 SIAAALILQEVLDRIS 153 I+A LIL+ ++ S Sbjct: 123 GISACLILESWFEQYS 138 >gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis ATCC 25644] gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis ATCC 25644] Length = 148 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73 + +D+G++ +G+A+SD A + + + + ++ F++ Sbjct: 1 MARLMGLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132 GLP NMN + GPR +++A+ +I+ +P F DERLTTV A+++L++ + SRKKR Sbjct: 61 GLPKNMNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKR 119 Query: 133 IQKVDSIAAALILQEVLD 150 + +D +AA+LILQ LD Sbjct: 120 KKVIDKLAASLILQNYLD 137 >gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA 1090] gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] Length = 151 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + + + +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL L+ Sbjct: 124 VLDQVAAQAILHGFLE 139 >gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens NRL30031/H210] gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens NRL30031/H210] Length = 151 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D HP + + + + F++G Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis MC58] gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis FAM18] gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha14] gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis ATCC 13091] gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha14] gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha153] gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis alpha275] gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis ATCC 13091] gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis alpha710] gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568] gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis OX99.30304] gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190] gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399] gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579] gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis ES14902] gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385] gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136] gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 151 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G++ H +R F + + + +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 124 VLDQVAAQAILHGFFE 139 >gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici DSM 20284] gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici DSM 20284] Length = 146 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SD A + + + ++ +A F+IGL Sbjct: 2 RLMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV + R + ++ +P F DERLTTV A+++LI+ + SR KR + Sbjct: 62 PKNMNNTEGPRVEAARNYG-KLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA+LIL+ L+ Sbjct: 121 VIDKLAASLILENYLN 136 >gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC 51142] gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp. ATCC 51142] Length = 143 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + R+ Q +L + + + +IGLP +M Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVIGLPYSM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ G + + F + + +P + DERLT+V A+ L + VD + Sbjct: 67 DGTIGFQAKKVQKFAKRLSTA-LELPIEYIDERLTSVEAETHLKSQKKYSRYNKGLVDRL 125 Query: 140 AAALILQEVLDRISF 154 AA +ILQ+ LD+ Sbjct: 126 AATIILQQWLDQRRA 140 >gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR] gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR] Length = 133 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+GTKRIG+A+SDP R A + K + EL I ++ ++GLP Sbjct: 2 RVLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS GP+ + + + +P +DERLTTV+A++IL++ ++SR KR Q VD Sbjct: 59 NMDGSLGPKAQEILELTEKLRE-TLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVD 117 Query: 138 SIAAALILQEVLDRIS 153 AA LILQ LD Sbjct: 118 KTAAVLILQGYLDSTR 133 >gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a] gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b] gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a] gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b] Length = 141 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 5/144 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + P I +ID G KR G+A+SD + A+ + ++ + ++ E + I Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYMAKEPVERII 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP MN + + FV ++ R +P + DER T+V A + +++ + +K R Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117 Query: 133 IQK--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141 >gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC 14672] gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 154 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 63/146 (43%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DPG A P + + V L I ++G Sbjct: 2 RQGRRLAIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F + + VP DER+TTV+A Q L V KK Sbjct: 62 LPRSLKGGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ G Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147 >gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM 30120] gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM 30120] Length = 139 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + + D GTK IG+A+ A L ++ + I+GLP Sbjct: 4 RTLLAFDFGTKSIGVAVGQEITGTARALTSLKASDGRPDWSQIEKLLKEWQPQLVIVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E R F N I + V DERL+TV A+ L + R KV Sbjct: 64 LNMDGTEQLVTSQARNFA-NRIHGRFGVQVQLHDERLSTVEAKAGLFEQGGYRALSKGKV 122 Query: 137 DSIAAALILQEVLDR 151 DS +A +IL+ ++ Sbjct: 123 DSASAVVILESWFEQ 137 >gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753] gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753] Length = 139 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I IDLG R G+A+ D A P + + +++ +GLP N Sbjct: 3 ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIALGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEG + R F ++ K +P F DER TTV+A L +V KKR VDS Sbjct: 63 MDGSEGESAQNAREFGA-LLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAVVDS 121 Query: 139 IAAALILQEVLDRIS 153 +AA +ILQ LD Sbjct: 122 VAAVIILQNYLDYRR 136 >gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like [uncultured bacterium] Length = 161 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 + Q + +ID G + +G+A+SD + P + K L + I Sbjct: 7 AATKGQRLLAIDYGDRFLGVAVSDIMWHISTPLFPIDSKSCN-AFQALGALIDQHACGGI 65 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G P+NMNGSEGP R F + +P +DERL+TV+A++ +++ ++SRKK Sbjct: 66 VVGYPINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKK 125 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 R QKVDS+AA+ +LQ LD + Sbjct: 126 RKQKVDSLAASYVLQGTLDYLR 147 >gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae NCCP11945] gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae 35/02] gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae DGI18] gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA6140] gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA19] gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae MS11] gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID18] gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID1] gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID24-1] gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae PID332] gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae SK-92-679] gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae SK-93-1035] gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae DGI2] gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae NCCP11945] gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 151 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E H +R F + + + +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL L+ Sbjct: 124 VLDQVAAQAILHGFLE 139 >gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium atrosepticum SCRI1043] gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 139 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GTK IG+AI A ++ ++ ++ ++GL Sbjct: 3 NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L + + Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 122 VDAASAVIILESWFE 136 >gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus chthonoplastes PCC 7420] gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus chthonoplastes PCC 7420] Length = 136 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+KRIG+A D A + R Q + + ++ ++GLP +M Sbjct: 1 MGLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ G + + + + + +P + DERLT+ A+Q+L +S + +D Sbjct: 61 NGTLGFQARQVQKYARRL-SAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRK 119 Query: 140 AAALILQEVLD 150 AAA+ILQ+ LD Sbjct: 120 AAAIILQQWLD 130 >gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii HTCC2633] gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii HTCC2633] Length = 162 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 L +L P P+ +ID GTK +G+A+S+ R P + R+K TQ A LL+ Sbjct: 4 LDPALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERAC 63 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 I+GLPL+M+G +G R S+R+FV N++ + +P + DERL+T +A + LI+ V Sbjct: 64 VGLIVGLPLHMHGGDGRRAQSSRSFVTNLLRLR-DLPVAYQDERLSTFAATESLIEAGVK 122 Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153 R VD+ AAA+IL+ + RI+ Sbjct: 123 PSHRKDFVDAQAAAVILESAIGRIN 147 >gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis ATCC 33393] gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis ATCC 33393] Length = 139 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG A+ A P + + I ++GLPL Sbjct: 4 TVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P + F + + R +P DERLTT A+ + R KVD Sbjct: 64 NMDGTEQPLTLRAKKFANRLHGR-FNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVD 122 Query: 138 SIAAALILQEVLDR 151 I+A LIL+ ++ Sbjct: 123 GISACLILESWFEQ 136 >gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f] gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f] Length = 141 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + P I +ID G KR G+A+SD + A+ + ++ + +I E + I Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERII 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP MN + + FV ++ +P + DER T+V A + +++ + +K R Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLKKCYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117 Query: 133 IQK--VDSIAAALILQEVLDRISF 154 K VD I+A +ILQ L+ F Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141 >gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 156 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119 + I + +IGLP++M+G+ + + F + + + +P DERLTT +A Sbjct: 61 NIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAAN 120 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L V RK R D++AA++IL+ VLD I L Sbjct: 121 NFLKSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156 >gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 137 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I + D GT IG A+ A P + ++ I ++GLP Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE P + F + + + + + DERLTTVSA+ + + + + KV Sbjct: 63 LNMDGSEQPLTQRAKKFANRL-NGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKV 121 Query: 137 DSIAAALILQEVLD 150 DSI+A LIL+ + Sbjct: 122 DSISACLILESWFE 135 >gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis L2TR] gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR] Length = 144 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A+ A P + K+ + ++GL Sbjct: 1 MSTVIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P + F + + R +P F DERLT+ SA++ L RK + Sbjct: 61 PLNMDGTEQPLTQKAKKFGNRLHGR-FGLPVAFQDERLTSTSARESLFAEGGFRKLKKGA 119 Query: 136 VDSIAAALILQEVLD 150 VDS AA +I+++ ++ Sbjct: 120 VDSQAALIIVEDFMN 134 >gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC 367] gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367] Length = 145 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 4/145 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G++ +G+A+SD A + + + + I + ++ F++GL Sbjct: 2 KLMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR +++ + +M+ + +P F DERLTTV A+++L++ + SR+KR Q Sbjct: 62 PKNMNNSLGPRAEASKRYG-DMLTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRKQ 120 Query: 135 KVDSIAAALILQEVLDRISFLESSK 159 +D +AA LILQ LDR L K Sbjct: 121 VIDKLAAGLILQNYLDRHGKLTREK 145 >gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis Z2491] gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 151 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G++ H +R F + + + +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 124 VLDQVAAQAILHGFFE 139 >gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis Ellin345] gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis Ellin345] Length = 153 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ++D GT+RIGLA+SDP A L+RK L S I I ++GL Sbjct: 8 HGRILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGL 67 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL ++G++ R F ++++ +P WDER T+V A ++L + +S KKR + Sbjct: 68 PLRLSGADSSSTEKAREFAA-WLEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEA 126 Query: 136 VDSIAAALILQEVLDR 151 VD ++A LILQ L+R Sbjct: 127 VDRLSAVLILQAFLER 142 >gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996] gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996] Length = 158 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D +HP + + + I ++G Sbjct: 5 PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ D Sbjct: 124 VLDQVAAQAILQGFFD 139 >gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis MR-1] gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis MR-1] Length = 141 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GTK IG+A+ A P + E+ I ++GLP Sbjct: 4 KTVLGFDFGTKSIGVAVGQQITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E H R F + + + K V DERLTT A+ L ++ + +V Sbjct: 64 LNMDGTEQEMTHRARKFANRL-NAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKGQV 122 Query: 137 DSIAAALILQEVLDR 151 D+++A LI++ + Sbjct: 123 DAVSAVLIIESYFEN 137 >gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896] Length = 140 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ++D+G +RIG+A+SD P + R K + +++ I +I + GL Sbjct: 3 EKRILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NM+G+ G + T FV + + VF DERL+T SA+Q++ V +K + Sbjct: 63 PKNMDGTVGFQGEKTMQFVEQLQQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKN 122 Query: 135 KVDSIAAALILQEVL 149 +D+IAA IL+ L Sbjct: 123 MIDTIAAVFILETYL 137 >gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii str. Madrid E] gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii] gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia prowazekii Rp22] Length = 156 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + +IGLP++M+G + + F + + + +P DERLTT SA Sbjct: 61 NIIKKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAEKL-KQSLGLPIYLQDERLTTKSANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L + RK R D++AA++IL+ VL+ I Sbjct: 120 FLKSFGIKRKDRNHNDDAVAASMILEIVLNAIKRF 154 >gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus M045] gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus M045] Length = 154 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 63/146 (43%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V L + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F + VP DER+TTV+A Q L V KK Sbjct: 62 LPRSLKGGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ SS G Sbjct: 122 VIDQAAAVIILQQALESERVSGSSPG 147 >gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus ATCC 25745] gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745] Length = 146 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75 + +D+G++ +G+++SD A + + + + + ++ F++GL Sbjct: 2 RLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN +EGPRV + R + +++ +P F DERLTTV A+++LI+ + SR KR + Sbjct: 62 PKNMNNTEGPRVEAARNYG-KLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120 Query: 135 KVDSIAAALILQEVLD 150 +D +AA+LIL+ L+ Sbjct: 121 VIDKLAASLILENYLN 136 >gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis 053442] gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis 053442] Length = 151 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G++ H +R F + + + +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 124 VLDQVAAQAILHGFFE 139 >gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae WPP163] gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163] Length = 139 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GTK IG+AI A ++ ++ ++ ++GL Sbjct: 3 NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L + + Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 122 VDAASAVIILESWFE 136 >gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 139 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG A+ A P + + I A ++GLPL Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P + F + R +P DERLTT A+ + R KVD Sbjct: 64 NMDGTEQPLTLRAKKFAKRLHGR-FNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVD 122 Query: 138 SIAAALILQEVLDR 151 I+A LIL+ + Sbjct: 123 GISACLILESWFEN 136 >gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor A3(2)] gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 167 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 2/148 (1%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G RIG+A DP A P + + V L + ++G Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F + VP DER+TTV+A Q L V KK Sbjct: 75 LPRSLKGGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 134 Query: 135 KVDSIAAALILQEVL--DRISFLESSKG 160 +D AA +ILQ+ L +R+S +G Sbjct: 135 VIDQAAAVIILQQALESERVSGRPPGEG 162 >gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170] gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170] Length = 139 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +DLG K IG+A+SDP A + RKK + +L+ I + + IIGL Sbjct: 1 MSRIMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NMN + GP+ +FV +++ + + + DER+TT+ + Q+L+DMNV+ K R + Sbjct: 61 PKNMNNTLGPQAMKVISFV-DLLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKY 119 Query: 136 VDSIAAALILQEVLDRIS 153 VD IAA+ ILQ LD + Sbjct: 120 VDKIAASFILQTYLDGRN 137 >gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 139 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + A+ + Q +L ++ E + I+G Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD I+A +ILQ L+ ++ Sbjct: 118 ALVDEISATIILQSYLESKKYI 139 >gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC 43243] gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC 43243] Length = 139 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D GTK +G+A++DP P + R K+ T + I ++ ++G Sbjct: 2 RILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+EG R +R F +M++R+ + V DERLTTV A++IL V+RK + Sbjct: 62 LPLNMDGTEGERAACSREFG-DMLERRTGLQVVMTDERLTTVEAEEILETCKVARKDYKK 120 Query: 135 KVDSIAAALILQEV 148 VDS+AA LIL++ Sbjct: 121 YVDSVAAVLILEDY 134 >gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM 9187] gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187] Length = 146 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + D GTK IG+A A P L + ++ + I+GL Sbjct: 6 NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + R F DERLTT A+ L + R + Sbjct: 66 PLNMDGTEQEMTQRARKFGQRLHGR-FGFQVEFKDERLTTTDAKARLFEHGGYRALGKSR 124 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LIL+ ++ Sbjct: 125 VDAVSAQLILESWMES 140 >gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii 1_2_48FAA] gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii 1_2_48FAA] Length = 141 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVAKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + FV ++ + +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENKRF 138 >gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC 23330] Length = 151 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + D G +RIG+A + AHP + + ++ I + ++ Sbjct: 5 PTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPSCLVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +++G+E R F + R +P + DERL++V A+++L V +K+ Sbjct: 65 GLPSHLDGTEHEITQLARKFGRRLHGR-FALPVYWVDERLSSVYAEELLRQAQVFGRKQK 123 Query: 134 QKVDSIAAALILQEVLDR 151 K+D +AA ILQ D Sbjct: 124 AKLDQVAAQAILQSFFDS 141 >gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827] gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827] Length = 139 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+A+ A L ++ + I+GL Sbjct: 3 SRTLLAFDFGTKSIGVAVGQEITGTARSLASLKANDGRPDWQQIEKLLKEWQPQLVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N I + V DERL+TV+A+ L + R K Sbjct: 63 PLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVAAKAELFERGGYRALSKGK 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 122 VDSASAVVILESWFEQ 137 >gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492] gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36] gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492] gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36] Length = 141 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++GL Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ + +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENKRF 138 >gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3] gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3] Length = 138 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A A P P L + + + A I+GL Sbjct: 2 SGTFLGFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + V + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARNFANK-IHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVVILESYFEQ 136 >gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 139 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG+AI A ++ ++ ++ ++GL Sbjct: 3 SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R + DERL+TV A+ L + + Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGIAIELHDERLSTVEARADLFERGGFKALDKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 122 VDAASAVIILESWFE 136 >gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305] gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 1/142 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + ID GTKR+GLAIS P + A P + R + Q + ++ + Sbjct: 1 MSSDFPETGTLLGIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRV 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP++M+GSEG + R F + +P ++WDER T+ A L +S Sbjct: 61 KGLVVGLPVHMSGSEGGKAKEARVFG-DWCGEITQLPVIYWDERFTSALADNHLRQSTMS 119 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 + KR + +D +AA ++LQ L+ Sbjct: 120 QAKRKKHLDKLAAQVMLQSFLE 141 >gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of Yqgf From Escherichia Coli, A Hypothetical Protein gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of Yqgf From Escherichia Coli, A Hypothetical Protein Length = 138 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P P + + T + + I+GL Sbjct: 2 SGTLXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLN +G+E P R F N I + V DERL+TV A+ L + R K Sbjct: 62 PLNXDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESYXEQ 136 >gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM 17393] gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM 17393] Length = 140 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL Sbjct: 1 MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVGKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + FV + + +P + DER T+V A + + + + +K R K Sbjct: 58 PKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD I+A +ILQ L+ F+ Sbjct: 118 ALVDEISATIILQSYLENKRFI 139 >gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083] gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083] Length = 154 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 63/146 (43%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V L + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R FV + VP DER+TTV+A Q L V KK Sbjct: 62 LPRSLKGGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ + G Sbjct: 122 VIDQAAAVIILQQALESERVSGKAPG 147 >gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM 43160] gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM 43160] Length = 222 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 64/131 (48%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID+GT R+G+AISDP A P + R + + + + + I+G P ++ Sbjct: 86 LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHL 145 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ G RA+ + R VP DERL+TV+A L + +++ +D Sbjct: 146 SGASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQA 205 Query: 140 AAALILQEVLD 150 AA +ILQ LD Sbjct: 206 AAVVILQAYLD 216 >gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria AMMD] gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria MC40-6] gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD] gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6] Length = 149 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R + +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149 >gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697] gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697] Length = 141 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVAKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + FV ++ + +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENKRF 138 >gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638] gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638] Length = 138 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+AI A P + + T + + A I+GL Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + I + DERL+TV A+ L + R Sbjct: 62 PLNMDGTEQPLTARARKFANK-IHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGS 120 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ ++ Sbjct: 121 VDSASAVIILESFFEQ 136 >gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256] gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A D +HP + + + I ++G Sbjct: 5 PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ D Sbjct: 124 VLDQVAAQAILQGFFD 139 >gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens Pf0-1] gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens Pf0-1] Length = 145 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 2/141 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + +PF DERLTT A+ + L+ R VD Sbjct: 66 MDGTPSEMCARAEKFARRL-NGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFLESS 158 +IAAAL+LQ LD + L S Sbjct: 125 AIAAALLLQGWLDENTALFES 145 >gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC 8482] gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510] gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A] gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482] gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510] gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A] Length = 139 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + A+ + Q +L ++ E + I+G Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD I+A +ILQ L+ ++ Sbjct: 118 ALVDEISATIILQSYLESKKYI 139 >gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira defluvii] gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus Nitrospira defluvii] Length = 203 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 Q I +ID G+KRIG A+SD A P R+ + + + ++G Sbjct: 2 KGQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +PL ++G GP F+ +++ + VP + WDER+TT +A+ +LI +V R+KR Sbjct: 62 MPLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD IAAA++LQ L + Sbjct: 121 IVDRIAAAILLQSYLASL 138 >gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 143 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+A+ A P P L + + ++GL Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R V DERLTT A+ +L ++ +K K Sbjct: 66 PLNMDGTEQEMTQRARKFANRLHGR-FRVAVETCDERLTTTDAKSMLFELGGYKKLTKDK 124 Query: 136 VDSIAAALILQEV 148 VDS++A +I Sbjct: 125 VDSVSACVIFASW 137 >gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella insecticola LSR1] gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella insecticola LSR1] Length = 140 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG+AI A L + L++ + ++GL Sbjct: 3 NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV+A+ L + R Sbjct: 63 PLNMDGTEQPLTSRARKFANRLHSR-FNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +AA+IL ++ Sbjct: 122 VDAASAAVILCSWFEQ 137 >gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 140 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG AI A P + + ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGAAIGQEVTGTARPLASFKANEGSPDWSKIEKMLKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F N I + V DERL+TV A+ L R Sbjct: 63 PLNMDGTEQPVTAQARKFA-NRIHGRFGVQVALHDERLSTVEARAHLFAGGGYRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDAASAVIILESWFEQ 137 >gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 139 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG+AI A ++ ++ ++ ++GL Sbjct: 3 SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E P R F + + R V DERL+TV A+ L + + Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121 Query: 136 VDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 122 VDAASAVIILESWFE 136 >gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001] gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001] Length = 165 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 1/159 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ I ++ + + +DLGTK IG+A+SD GR+ A P + R K T A ++ Sbjct: 1 MNRDEIAAFAEASRGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIV 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +IGLPLNM+GSEGPR S+R+F N+ +F+DERL+T + + Sbjct: 61 ALCAAHGVGGLVIGLPLNMDGSEGPRAQSSRSFARNLRPLLPLP-VLFFDERLSTAAVTR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159 L++ + SR +R + VD +AAA ILQ LD + + S Sbjct: 120 TLLEADASRARRGEVVDKLAAAYILQSCLDVMGGMFSGA 158 >gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1] gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1] Length = 246 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + I L L+ +Q + +D G K IG+A+SD G A P L R K++ A ++ Sbjct: 84 MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +++ ++GLPL+++GS GP + R + N+ + +P WDERL++ + + Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDWTLNLSE-LTGLPAAMWDERLSSSAVNR 202 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 LI + +++R++R VD +AAA ILQ LD Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233 >gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC 27560] gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC 27560] Length = 142 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G+K +G+A++DP A + R K+ +T + + NI ++G Sbjct: 2 RILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P+ ++G+EG RV T+ F M++R+ + VF DERLTTV A +I+ + + ++ R + Sbjct: 62 YPVMLSGTEGERVKKTKEFGA-MLERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRYK 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD IAA +IL++ ++RI Sbjct: 121 YVDQIAATIILEDYINRI 138 >gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis URRWXCal2] gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 154 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ L PN P+ +ID G+K++G+A+S+ R A P ++ LL Sbjct: 1 MIIKNLQEFYPLLIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 S I + +IGLP++M+G+ + + F + + +P DERLTT +A Sbjct: 61 SIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L V RK R D++AA++IL+ VLD + L Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSMKKL 154 >gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC 23685] gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC 23685] Length = 140 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GT+ IG AI A P + ++ + ++GL Sbjct: 3 SRTLLAFDFGTRSIGCAIGQELTGSARPLQSFKANEGIPDWQQIEKVLREWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L R + Sbjct: 63 PLNMDGSEQPLTQLARKFANRLHGR-FGVQIALHDERLSTVEARAHLFADGGYRALEKGR 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +AALIL+ D Sbjct: 122 VDAASAALILESWFDN 137 >gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514] gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514] Length = 138 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID GTKRIGLAISD A P F++ + + L I + + ++G+P Sbjct: 3 RILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPR 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS GP + FV + D V +P WDERLT+ A + LI +V R KR +KVD Sbjct: 63 NMDGSYGPAALKVQEFVTVLKD-SVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEKVD 121 Query: 138 SIAAALILQEVLDRIS 153 AAA++LQ LD + Sbjct: 122 KTAAAILLQSYLDSFA 137 >gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena CCY9414] gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena CCY9414] Length = 156 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G KR+G+A D A + R + ++ + + + +IGLP +M Sbjct: 14 LGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVIGLPYSM 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ G + + F + + + +P + DERLT+ A+Q+LI N S + +D Sbjct: 74 DGTLGFQARQVQKFAKRL-GKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132 Query: 140 AAALILQEVLDRISF 154 AA++ILQ+ LD Sbjct: 133 AASIILQQWLDSRRA 147 >gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae MTU5] gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia massiliae MTU5] Length = 165 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL Sbjct: 12 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVITSLL 71 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + IIGLP+NM+G+ + + F + + +P DERLTT +A Sbjct: 72 NIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAEELAK-SINLPIYLQDERLTTKAANN 130 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L V RK R D++AA++IL+ VLD I + Sbjct: 131 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 165 >gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855] gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855] gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 139 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + A+ + Q +L ++ E + I+G Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD I+A +ILQ L+ ++ Sbjct: 118 ALVDEISATIILQSYLESKKYI 139 >gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida subsp. salmonicida A449] gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 140 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P + ++ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R F DERLTT A+ L + + Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGR-FGKQVEFKDERLTTTDARARLFERGGYKALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD ++A LIL+ ++ Sbjct: 122 VDGVSAQLILEAWMEE 137 >gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu 4113] gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu 4113] Length = 154 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 1/148 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ + I +ID+G RIG+A DP A P + + + L + + + Sbjct: 1 MRRGRRI-AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVV 59 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP +++G EGP R F + R VP DER+TTV+A Q L V+ KK Sbjct: 60 VGLPRSLSGREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKG 119 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 VD AA +ILQ L+ + G Sbjct: 120 RSVVDQAAAVVILQSALETERVSGRAPG 147 >gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002] gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002] Length = 142 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D G +RIG+A+ + AHP + + Q + I A ++G Sbjct: 2 PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E +R F + + R +P DER T++ A+ +L + V +K+ Sbjct: 62 LPVHADGTEHDLTRLSRRFANRLKGR-FGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA ILQ ++ Sbjct: 121 ALDQVAAQAILQTWFEQ 137 >gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026] Length = 143 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + K + ++ + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KVIDQMAAVLILQNYLE 137 >gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799] gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799] Length = 138 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I + D GTK IG+A+ A P + + E+ + + ++GL Sbjct: 1 MSTIMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G++ + R F + + R + + DERLTTV A+ L + R + + Sbjct: 61 PLNMDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQ 119 Query: 136 VDSIAAALILQEVLDRI 152 VD++AAALIL+ + + Sbjct: 120 VDALAAALILESYFETL 136 >gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis M01-240013] gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 151 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + + F++G Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G++ H + F + + + +P + DERL++V A+ +L + V KKR Sbjct: 65 LPVHTDGTKHEMTHLSHKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA IL + Sbjct: 124 VLDQVAAQAILHGFFE 139 >gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2] gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23] gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2] gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23] gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 138 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + +I E + IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT] gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336] gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus 129PT] gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336] Length = 141 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG A+ A P + L++ + ++GLPL Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSE H R F + + + + V DERLTT A+ + R + +KVD Sbjct: 64 NMDGSEQDLTHLARKFANRL-NGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVD 122 Query: 138 SIAAALILQEVLDR 151 SI+A LIL+ + Sbjct: 123 SISACLILESWFEN 136 >gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus amylolyticus DSM 11664] gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus amylolyticus DSM 11664] Length = 142 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISD A + K L + + A F++GL Sbjct: 2 RLIGLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+G+ G V ++A+ + +K +P + DERLTTV ++++L+ + V RKKR Sbjct: 62 PKNMDGTSGHSVDRSKAYGERL-KKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 139 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG A+ A P + + I A ++GLPL Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P + F + R VP DERLTT A+ + KVD Sbjct: 64 NMDGTEQPLTLRAKKFAKRLHGR-FNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVD 122 Query: 138 SIAAALILQEVLDR 151 I+A LIL+ + Sbjct: 123 GISACLILESWFEN 136 >gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas tunicata D2] gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas tunicata D2] Length = 149 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D GT+ IG+A+ A P + + E+ + + ++GL Sbjct: 11 ERTVLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGL 70 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+ + F + + + +P DERLTT A+ L +K Sbjct: 71 PLNMDGTNQEVTFQAKKFANRLHN-NYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGN 129 Query: 136 VDSIAAALILQEVLDR 151 VDS++A LIL+ + Sbjct: 130 VDSMSALLILESYFEN 145 >gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus GRL 1112] gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus 30SC] gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus GRL 1112] gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus 30SC] gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus GRL 1118] Length = 142 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD A + + L + + F++GL Sbjct: 2 RLLGLDVGSKTVGVAVSDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + + K +P + DERLTT+ +Q++L++ + RKKR Sbjct: 62 PKNMDGTSGSSVARSKAYGKRL-EEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 140 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P + ++ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R F DERLTT A+ L + R Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGR-FGKQVEFKDERLTTTDARARLFERGGYRALEKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD ++A LIL+ ++ Sbjct: 122 VDGVSAQLILEAWMEE 137 >gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 141 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++G Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGF 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ + +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENKRF 138 >gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC 43183] gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056] gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC 43183] gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056] Length = 141 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + + ++ ++ E + ++GL Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFIMDYVAKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENRRF 138 >gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC 23834] gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC 23834] Length = 148 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D G RIG+A D AHP + + + + + + F++G Sbjct: 5 PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +GSE R F H + + + +P + DERLT++ A ++L + +K+ Sbjct: 65 LPFSTDGSEHEMTRLARKFGHRL-NGRFGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10] gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10] Length = 149 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R + +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149 >gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1] gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1] Length = 140 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 3/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFII 73 + I +DLG++ G+AISDP A K A + + + NI ++ Sbjct: 1 MEKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +MNG G R + F + ++ + V + DERLTTV + LI +VSRKKR Sbjct: 61 GLPKHMNGDLGERAQISIDFKERL-EKMMDVEVILVDERLTTVMMENQLIFADVSRKKRK 119 Query: 134 QKVDSIAAALILQEVLDRIS 153 + +D +AA ILQ LD Sbjct: 120 EVIDKLAAVQILQGYLDSQR 139 >gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708] gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708] Length = 158 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+KRIGLA D A + RK + ++ + + ++GLP M Sbjct: 14 LGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQIVNARRVQVLVVGLPYAM 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F H + + + +P + DERLT+ A+Q+LI N S + +D Sbjct: 74 DGSLGFQARHVQKFTHRLA-QALKLPVEYVDERLTSYQAEQLLIAENRSPSRHKGLIDRK 132 Query: 140 AAALILQEVLD 150 AAALILQ+ LD Sbjct: 133 AAALILQQWLD 143 >gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM 15897] gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM 15897] Length = 140 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73 + I +DLG++ G+AISD AH + A + + + NI ++ Sbjct: 1 MEKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +MNG G R + F + ++ + V + DERLTTV A LI +VSRKKR Sbjct: 61 GLPKHMNGDLGERAQISIDFKERL-EKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRK 119 Query: 134 QKVDSIAAALILQEVLDRIS 153 Q VD +AA ILQ LD+I Sbjct: 120 QVVDKMAAVEILQGYLDKIR 139 >gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483] gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483] Length = 138 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + +I E + IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565] gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565] Length = 140 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P L E+ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G++ R F + + R P F DERLTT A+ L + R Sbjct: 63 PLNMDGTDQEITVRARKFGNRLHGR-FGKPVEFKDERLTTTDARARLFERGGYRALEKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD ++A LI++ ++ Sbjct: 122 VDGVSAQLIVEAWMEE 137 >gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533] gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533] Length = 143 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + K + ++ + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KVIDQMAAVLILQNYLE 137 >gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum WCFS1] gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum JDM1] gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus plantarum WCFS1] gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum JDM1] gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 144 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G++ +G+AISD A + + + + + + F++GL Sbjct: 2 KLMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN + GPR + + + ++ + ++P F DERLTTV A+++L++ N SRKKR + Sbjct: 62 PKNMNNTLGPRAEAAQHYGE-LLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRKK 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA+LILQ LDR L Sbjct: 121 VIDKLAASLILQNYLDRHGKL 141 >gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1] gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22] gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1] gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22] Length = 143 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + K + ++ + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KVIDQMAAVLILQSYLE 137 >gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14] gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14] Length = 138 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNF---IGEYVAKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185] gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185] Length = 138 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + +I E + I+GL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGDYIAKEPVERIIVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + + + + +K R K Sbjct: 58 PRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii FI9785] gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii FI9785] Length = 143 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + K + ++ + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGGRLKEK-FDLPVYYVDERLTTVQADRILVEEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KVIDQMAAVLILQNYLE 137 >gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102] gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102] Length = 151 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+A + +HP + + + + F++G Sbjct: 5 PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680] gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 156 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 63/146 (43%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G RIG+A DP A P + + V L + ++G Sbjct: 4 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP RAF + VP DER+TTV+A Q L V KK Sbjct: 64 LPRSLKGGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRS 123 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ + G Sbjct: 124 VIDQAAAVIILQQALESERVSGKAPG 149 >gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] Length = 143 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + K + ++ + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KVIDQMAAVLILQSYLE 137 >gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC 10712] Length = 156 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 1/149 (0%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 +++ + I ++D+G RIG+A DP A P + + V L + Sbjct: 2 TMRRGRRI-AVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEV 60 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP +++G EGP RAF M VP DER+TTV+A Q L V KK Sbjct: 61 VVGLPRSLSGREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKK 120 Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ L+ + G Sbjct: 121 GRSVIDQAAAVIILQNALEAERVSGNPPG 149 >gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] Length = 143 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISDP A + K + ++ + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R Sbjct: 62 PKNMDGSSGRSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KVIDQMAAVLILQNYLE 137 >gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans ATCC 33394] gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans ATCC 33394] Length = 159 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + + D G RIG+A + AHP + + ++ I + Sbjct: 4 IPKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPEYLV 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP +++G+E R F + R P + DERL++V A+++L + V KK+ Sbjct: 64 VGLPTHIDGTEHEMTRLARQFGRRLHGR-FGKPVYWVDERLSSVYAEELLREAAVFGKKQ 122 Query: 133 IQKVDSIAAALILQEVLDR 151 +D +AA IL D Sbjct: 123 KPVLDQVAAQAILHYFFDN 141 >gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon 107 str. F0167] Length = 143 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 4/141 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72 + I +D G+K IG+AISD A P + R K+ ++ + + ++I + Sbjct: 2 KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP+NM+G G R T FV + +V +P V DERLTTV A +IL + V ++ R Sbjct: 62 VGLPINMDGRSGERAALTLEFVEKL-KLRVDIPIVMQDERLTTVEADEILDESGVKKQDR 120 Query: 133 IQKVDSIAAALILQEVLDRIS 153 Q +D IAA +IL+E +++ + Sbjct: 121 KQFIDQIAAGIILKEYMEKEN 141 >gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis Bu] Length = 149 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 1/144 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + + D G KRIG+AI + R A + + + A ++G Sbjct: 7 RDATLMAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ + F + + + + +P + DER ++V A+ L + +V + R Sbjct: 67 LPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAG 125 Query: 135 KVDSIAAALILQEVLDRISFLESS 158 +D+ AA +ILQ+ LD++S E Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149 >gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246] gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str. Rustic] gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246] gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str. Rustic] Length = 154 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + IIGLP++M+G+ + + F + + +P DERLTT +A Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +L V RK R D++AA++IL+ VLD I + Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154 >gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM 17241] gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM 17241] Length = 142 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G R GLA D A P L K ++ + + ++ I+G P+ Sbjct: 2 KILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+EGPR F + V VP WDER TTVSA L N KKR + +D Sbjct: 62 NMNGTEGPRAQLCADFAGQLAK-LVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVID 120 Query: 138 SIAAALILQEVLDRIS 153 +AA +IL+ L+ Sbjct: 121 EVAATIILESYLNYRR 136 >gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus succinogenes 130Z] gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z] Length = 140 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D GTK IG A+ A P + ++ + ++GL Sbjct: 2 GMTVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPDWADIEKCLKEWKPDMVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F H + + + V + DERLTT A+ + + R + K Sbjct: 62 PLNMDGTEQDLTRRARKFGHRL-NGRFGVKVAWQDERLTTTQARTEIFERGGYRALKKGK 120 Query: 136 VDSIAAALILQEVLDR 151 VDSI+A LIL+ + Sbjct: 121 VDSISACLILESWFEE 136 >gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000] gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000] Length = 163 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 2/148 (1%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V L + ++G Sbjct: 11 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F + VP DER+TTV+A Q L V KK Sbjct: 71 LPRSLKGGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 130 Query: 135 KVDSIAAALILQEVL--DRISFLESSKG 160 +D AA +ILQ+ L +R+S +G Sbjct: 131 VIDQAAAVIILQQALESERVSGRPPGEG 158 >gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix rhusiopathiae ATCC 19414] Length = 144 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 2/143 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGL 75 I +DLG+K G+A+SD +AHP L K + + L S I E + +G Sbjct: 3 GKIIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN G R + F + + V DERLT+V A + LID +VSRKKR + Sbjct: 63 PKMMNNDVGERAQISEEFKKTL-ESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKV 121 Query: 136 VDSIAAALILQEVLDRISFLESS 158 VD +AA ILQ LD+ F+E + Sbjct: 122 VDQLAAVHILQTYLDKRRFMEGN 144 >gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5] gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae ESF-5] Length = 154 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ +ID G+K++G+A+S+ A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + IIGLP++M+G+ + + F + + +P DERLTT +A Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +L V RK R D++AA++IL+ VLD I + Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154 >gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans OS217] gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217] Length = 141 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 NQ + D GTK IG+A+ A P L + E+ I ++GL Sbjct: 4 NQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGL 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F N I + V + DERLTT A+ L ++ + + Sbjct: 64 PLNMDGTEQDITQRAKKFA-NRISGRFGVKVLTQDERLTTADAKARLFELGGYKALTKGQ 122 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 123 VDAVSAVLIIESYFEN 138 >gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121] gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121] Length = 152 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GT RIG+A+ A P + + + + F++GLP Sbjct: 15 RTLLGFDFGTTRIGIAVGQEITATATPINPIKARDGIPNWDTIAEVVKEWQPDGFVVGLP 74 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E R F + + R P DERL++ A+ +I +R + V Sbjct: 75 LNMDGTENEMCQRARKFANRLHGR-YNKPSYMMDERLSSYEAKGQVIKEGGNRNFKANSV 133 Query: 137 DSIAAALILQEVL 149 D +AA +IL+ Sbjct: 134 DGLAAQMILESWF 146 >gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus NCFM] gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796] gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM] gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796] Length = 142 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISD A + + L + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++LI+ + RKKR Sbjct: 62 PKNMDGTSGNSVARSKAYGKRL-EEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769] gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii ATCC 23769] Length = 153 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + I +L +L+P Q + ID G K IG+A+SD A P + R+K++ A E+ Sbjct: 1 MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 ++ A + GLPL+++GS GP + R ++ N+ + V +P WDERL++ + + Sbjct: 61 ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWMMNLSQQ-VGLPAAMWDERLSSSAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 +LI D++++R++R Q VD +AAA ILQ LD Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150 >gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC 19061] gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC 19061] Length = 139 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 N+ I + D GT+ IG AI A + + + + I+G Sbjct: 2 KNRTIIAFDFGTRSIGAAIGQEVTGTARALSAFKANEGSPNWQLIEKLLKEWQPDLVIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+E P R F + + R V DERLTTV A+ L D + Sbjct: 62 LPLNMDGTEQPVTAQARKFANRLHGR-FGVQVALHDERLTTVEARSHLFDHGGYKALNKG 120 Query: 135 KVDSIAAALILQEVLDR 151 KVD+ +A +IL+ +R Sbjct: 121 KVDAASAVIILESWFER 137 >gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057] gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057] Length = 141 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + Q +L ++ E + ++GL Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTH---QLLTFILDYVAKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ + +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENRRF 138 >gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1] gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1] Length = 141 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+G +RIG+A+SDP R A P + + +L+ I + A ++GLP Sbjct: 6 GRVMALDVGERRIGVALSDPTRMLASPLTTIRAVPRSTALKRILTLIRDYQVTALVVGLP 65 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L MNG GP+ + FV + + +P F DERLTTV+A++++ID+ + ++R ++ Sbjct: 66 LTMNGDIGPQATLVQQFVDEL-RPLIDIPIFFVDERLTTVAAERMMIDLKIKPEQRRARI 124 Query: 137 DSIAAALILQEVLDRIS 153 D +AA++ILQ+ LD Sbjct: 125 DEVAASIILQDFLDSQR 141 >gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120] gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC 29413] gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120] gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413] Length = 151 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KR+G+A D A + R + ++ + + + ++GLP +M Sbjct: 8 LGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSM 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F + + +P + DERLT+ A+Q+LI NVS + +D Sbjct: 68 DGSLGFQARQVQKFTSRLAKA-LQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRK 126 Query: 140 AAALILQEVLD 150 AAALILQ+ LD Sbjct: 127 AAALILQQWLD 137 >gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus DSM 14838] gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus DSM 14838] Length = 140 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL Sbjct: 1 MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLTFILDYVGKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + FV + + +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQSYLENKRF 138 >gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5] gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5] Length = 149 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVISNLNREHRFKAVGDLLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R + +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149 >gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC 23779] gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC 23779] Length = 158 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 1/140 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + I ++D+G KRIG+A+ DP R A +P L + + +LL IT + +I Sbjct: 5 PTHGRIIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVI 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL + G G + + +AF + +++ +P +DER T+V A++ L M + + K Sbjct: 65 GLPLTLRGEVGAQAKAVQAFSRGL-EKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHR 123 Query: 134 QKVDSIAAALILQEVLDRIS 153 VD +AA LILQ+ + I+ Sbjct: 124 DHVDELAAILILQDYMSSIA 143 >gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica RCB] gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB] Length = 146 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G KRIG+A + AHP + + + + ++GL Sbjct: 1 MGTVLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + +G+ F + R+ +P F DERLT++ A+ L + + K Sbjct: 61 PTHADGTPHEMTRLATKFGERLA-RRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPL 119 Query: 136 VDSIAAALILQEVLDR 151 +D++AA LILQ + Sbjct: 120 LDAVAAQLILQTWFES 135 >gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii DSM 18315] gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii DSM 18315] Length = 140 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GL Sbjct: 1 MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKF---LADYVSREPVERFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P MN + AFV ++ +P ++DER T+V A + ++D + +KKR Sbjct: 58 PKQMNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117 Query: 134 QKVDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ + Sbjct: 118 GLVDEISAVIILQSYLENKKY 138 >gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2] Length = 144 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+A+ A P L + + ++GL Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F + + R V DERLTT A+ +L ++ +K +K Sbjct: 66 PLNMDGTEQEVTQRAKKFANRLHGR-FKVAVDLCDERLTTTDAKSMLFELGGYKKLTKEK 124 Query: 136 VDSIAAALILQEVLDR 151 +DS++A +I ++ Sbjct: 125 IDSVSACVIFTSWVEN 140 >gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter oxydans 621H] gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter oxydans 621H] Length = 160 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + DL L+ Q + +D G+K IG+A++D A P L R+K+ + A EL Sbjct: 1 MPLFNPHDLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELA 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + T+++ A ++GLPL+++GS GP + + + ++ + +P WDERL++ + + Sbjct: 61 KIVRTQDVGALVVGLPLSLDGSFGPAARAASDWTQALSEK-LGIPAGLWDERLSSSAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 LI D +++R +R + VD +AAA +LQ LD Sbjct: 120 FLIKDADMTRGRRAEVVDKMAAAYMLQGWLD 150 >gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas haloplanktis ANT/505] gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas haloplanktis ANT/505] Length = 149 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 3/144 (2%) Query: 10 VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 KSLKP + + D GTK IG+AI A + + + + Sbjct: 3 KKSLKPQGERTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDHIAVQVAEWQ 62 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++GLPLNM+G+ + F + + + +P DERLTT A+ L + Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIPVQTQDERLTTADAKARLFESGG 121 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + VD+++A +IL+ + Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145 >gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5] gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5] Length = 158 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ + A +L Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 E AA IIGLPL+M+GS GP + R + H + R+ +P DERL++ + + Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAHAIA-RETGLPVAMMDERLSSAAVNR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 LI+ +V+R KR +VD+ AA+ +LQ LD ++ Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLN 152 >gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108] gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108] Length = 141 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + Q ++ ++ E + ++GL Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTH---QLLAFIIDYVAKEPVERILVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ ++ +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLENKRF 138 >gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8] gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8] Length = 140 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G R G+AISD A P + + A ++ ++GLP+ Sbjct: 2 RILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R AF M+ V V WDER TTV+A Q L + NV KKR VD Sbjct: 62 NMNGTKGERAEKCEAFAE-MLRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVVD 120 Query: 138 SIAAALILQEVL 149 ++AA +IL+ L Sbjct: 121 TVAATIILESYL 132 >gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides thetaiotaomicron VPI-5482] gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482] gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 138 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNF---IGGYVAKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22] gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22] Length = 138 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYMAKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383] gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383] Length = 149 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+A+ + R A + + + Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R + +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149 >gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402] gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402] gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 139 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73 + I +DLG++ G+AISD AH + A +++ I I ++ Sbjct: 1 MERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +MNG G R + F + + V DERLTT AQ LI +VSRKKR Sbjct: 61 GLPKHMNGDLGERAQISIMFKEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA ILQ LD Sbjct: 121 QVIDKMAAVAILQGYLD 137 >gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991] gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991] Length = 137 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 + +DLG++ +G+++SD A P + + ++ ++I I ++GL Sbjct: 2 RVLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG G R + F + + V V WDERLTTV+AQ+ILI +VSRKKR + Sbjct: 62 PKHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKKV 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ LD S Sbjct: 120 IDQMAAVQILQGYLDSQS 137 >gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 139 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GT+ IG AI A ++ + I+GL Sbjct: 3 NRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWQQIEKLLKEWQPDLVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R V DERLTTV A+ L D + K Sbjct: 63 PLNMDGTEQFVTIQARKFANRLHGR-FGVQVELQDERLTTVEARAHLFDRGGYKALDKGK 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDATSAVIILESWFEQ 137 >gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC 73102] gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102] Length = 158 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G KRIG+A D A + R Q ++ + + ++GLP +M Sbjct: 14 LGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVMGLPYSM 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F + + +P + DERLT+ A+Q+LI N S + +D Sbjct: 74 DGSIGFQARQVQKFTTRLSKA-LKLPVEYVDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132 Query: 140 AAALILQEVLD 150 AAALILQ+ LD Sbjct: 133 AAALILQQWLD 143 >gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135] gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135] Length = 138 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP + A+ + ++ LL ++ E + ++G Sbjct: 1 MSRILAIDYGRKRTGIAVTDPMQIIANGLTTVPTHELMDF---LLKYVAQEKVERIVVGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P MN + + + FV + + +P DER T+V A Q ++D + +K R Sbjct: 58 PKQMNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDK 117 Query: 134 QKVDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ Sbjct: 118 ALVDEISATIILQSYLESRRM 138 >gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii RML369-C] gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU 85-389] gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C] gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU 85-389] Length = 154 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ SID G+K+IG+AIS+ R A P + LL Sbjct: 1 MIINNLQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I +IGLP++M+G + + F + + +P DERLTT +A Sbjct: 61 EKIEQYKACGIVIGLPIDMSGMQTEQSAIVIKFAEELTK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L + RK+R D++AA++IL+ VL+ I+ L Sbjct: 120 FLKSFGIKRKERNNNDDAVAASMILETVLNSINKL 154 >gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC 7421] gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421] Length = 156 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G+KRIG+A DP A +VR + + +I A +IGLP Sbjct: 5 SVLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPR 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS GP+ H + F + R + VP + DERL+TV A + L VS +R +D Sbjct: 65 NMNGSLGPQAHRIQHFGQQLA-RVIDVPIDYVDERLSTVQAGRALQS--VSATRRKALID 121 Query: 138 SIAAALILQEVLD 150 AAA+ILQ+ LD Sbjct: 122 QQAAAIILQQWLD 134 >gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130] gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130] Length = 160 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 + +L+ + + IDLGTK IGLAISD + P + R K T +L F T Sbjct: 8 ELAQFADALQGSGRLLGIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFAT 67 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 E ++ +IGLPLNM+GSEGPR S+RAF N+ R +P WDE L+T A + + Sbjct: 68 AERVSGIVIGLPLNMDGSEGPRAQSSRAFARNL-SRLTELPIQLWDESLSTSEALEGVSA 126 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 ++ K K+D++AA+LILQ D + L Sbjct: 127 KKAAQMKADGKLDALAASLILQGCCDAMRAL 157 >gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM 18228] gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM 18228] Length = 142 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP + A+ + Q LL ++T E++ I+G Sbjct: 1 MSRIIAIDYGRKRTGIAVTDPMQIIANGLTTVPTH---QLMDFLLKYVTQESVERIIVGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + + F++ + + +P DER T+V A Q ++ + +K R K Sbjct: 58 PKQMNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD I+A +ILQ L+ + Sbjct: 118 ALVDEISATIILQSYLEGKRNM 139 >gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3] gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3] Length = 149 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP + + D G+K IG+A A P + + L I II Sbjct: 8 KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+G+E + F + + R V DERLTT SA++ + ++ + Sbjct: 68 GLPLNMDGTEQYITQRAKKFANRLHGR-FGVKIALQDERLTTASAKEFIFELGGYKALDK 126 Query: 134 QKVDSIAAALILQEVLDR 151 K+DS++AALIL+ + + Sbjct: 127 GKIDSVSAALILESWMSQ 144 >gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1] Length = 143 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+D G R G+A+ A P + K + + + + ++G P N Sbjct: 3 IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R F + + +P WDER TTVSA L N KKR VD+ Sbjct: 63 MNGTIGERCEKCTLFAEKL-EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121 Query: 139 IAAALILQEVLDRIS 153 +AA +IL+ L+ Sbjct: 122 VAAVIILESYLEYRK 136 >gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens Pf-5] gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens Pf-5] Length = 145 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+GS F + + + VPF DERLTT A+ + L R VD Sbjct: 66 MDGSPSDMCVRAEKFARRL-NGRFNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD + L Sbjct: 125 AIAAALLLQGWLDENAGL 142 >gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans 568] gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568] Length = 140 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG AI A + + ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQLVTEQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ +R Sbjct: 122 VDSASAVVILESWFER 137 >gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum AIU301] gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum AIU301] Length = 158 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ +A +L Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 E AA IIGLPL+M+GS GP + R + H + R+ +P DERL++ + + Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAHAIA-RETGLPVAMMDERLSSAAVNR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 LI+ +V+R KR +VD+ AA+ +LQ LD ++ Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLN 152 >gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii str. Iowa] gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa] Length = 154 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ +ID G+K++G+A+S+ A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + IIGLP++M+G+ + + F + + +P DERLTT +A Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +L V RK R D++AA++IL+ VLD I + Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154 >gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 140 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG A+ R A P + + + ++GLPL Sbjct: 4 TVLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E R F + + + + V DERLTT A+ + + + KVD Sbjct: 64 NMDGTEQELTTRARKFANRL-NGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVD 122 Query: 138 SIAAALILQEVLDR 151 I+A LIL+ ++ Sbjct: 123 GISACLILESWFEK 136 >gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552] gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552] Length = 139 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73 + I +DLG++ G+A+SD AH Q A ++ I I ++ Sbjct: 1 MEKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +MNG G R + F + + + V DERLTT AQ LI +VSRKKR Sbjct: 61 GLPKHMNGDLGERAQISIMFKEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA ILQ LD Sbjct: 121 QVIDKMAAVAILQGYLD 137 >gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC 43184] gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC 43184] Length = 140 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GL Sbjct: 1 MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRF---LADYVSREPVERFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P MN + AFV ++ +P ++DER T+V A + ++D + +KKR Sbjct: 58 PKQMNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117 Query: 134 QKVDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ + Sbjct: 118 GLVDEISAVIILQSYLENKKY 138 >gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE] gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE] Length = 154 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 64/146 (43%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V L + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP RAF + VP DER++TV+A Q L V+ KK Sbjct: 62 LPRSLGGGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ L+ ++ G Sbjct: 122 VIDQAAAVVILQNALESERASGAAPG 147 >gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis 3_1_12] gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 138 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + +++ E + IIGL Sbjct: 1 MSRIIAIDYGRKRTGIAVSDAMQIIANGLTTVPSHELLDF---ITNYVKQEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +I+ + +K R K Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD I+A +ILQ L+ Sbjct: 118 ALVDEISATIILQSYLESKR 137 >gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii 115-3-CHN] gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii JV-V16] gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii 115-3-CHN] gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii JV-V16] Length = 148 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISD A + + + + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRI 133 P NM+GS+G V+ ++ + + + K +P + DERLTT+ A ++LI+ RKKR Sbjct: 62 PKNMDGSDGASVNRSKNYGKRL-EEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ LD Sbjct: 121 EVIDQMAAVLILQNYLD 137 >gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 139 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GT+ IG AI A ++ + I+GL Sbjct: 3 NRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWGQIEKLLKEWQPDLVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R V DERLTTV A+ L D + K Sbjct: 63 PLNMDGTEQFVTVQARKFANRLHGR-FGVQVQLQDERLTTVEARAHLFDRGGYKALNKGK 121 Query: 136 VDSIAAALILQEVLDR 151 VD+ +A +IL+ ++ Sbjct: 122 VDATSAVIILESWFEQ 137 >gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4] gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7] gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3] gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4] gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7] gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3] Length = 141 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GTK IG+AI A P L E+ I ++GLP Sbjct: 4 KTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E H R F + + + K V V DERLTT A+ L ++ + +V Sbjct: 64 LNMDGTEQEMTHRARKFANRL-NAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122 Query: 137 DSIAAALILQEVLDR 151 D+++A LI++ + Sbjct: 123 DAVSAVLIVESYFEN 137 >gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2M] gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2] gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD1] gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD1] gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2] gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans CGD2M] Length = 149 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 1/148 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ + + NV Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGMRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLE 156 + R +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARADMLDAEAARVILQQYLDQLSDHE 147 >gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074] gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 1/152 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + L+ + ++D+G RIG+A DP A P + + V L + + Sbjct: 1 MSGVLRRGRR-LAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEP 59 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP ++ G EGP R F + VP DER++TV+A Q + V Sbjct: 60 IEVVVGLPRSLKGGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 KK +D AA +ILQ L+ + G Sbjct: 120 SKKGRAVIDQAAAVVILQSALESERASGDAPG 151 >gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii ATCC 27126] Length = 143 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D GTK IG+A+ A P L + + ++GL Sbjct: 6 NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIVVVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R V DERLTT A+ +L ++ +K K Sbjct: 66 PLNMDGTEQEMTQRARKFANRLHGR-FKVAVDTCDERLTTTDAKAMLFELGGYKKLTKDK 124 Query: 136 VDSIAAALILQEV 148 VDS++A +I Sbjct: 125 VDSVSACVIFASW 137 >gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110] gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110] Length = 143 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + R+ Q +L + +T +IGLP +M Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVIGLPYSM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F I + + +P + DERLT+V A+ L + VD + Sbjct: 67 DGSIGFQAKQVQKFAKR-ISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNKGLVDRL 125 Query: 140 AAALILQEVLDRISF 154 AA +ILQ+ LD+ Sbjct: 126 AATIILQQWLDQRRA 140 >gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 3_1_53] gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 3_1_53] Length = 137 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +DLG+K +G+++SD A P + ++ +I + ++GL Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR + Sbjct: 62 PKHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKKI 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ LD + Sbjct: 120 IDQMAAVQILQSYLDSKN 137 >gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis str. McKiel] gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis str. McKiel] Length = 154 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 1/153 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN + +ID G+K++G+A+S+ R A P + T +L Sbjct: 1 MIIKNLQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 S I I +IGLP++M+G + + F + +P DERLTT +A Sbjct: 61 SIIAKYKICGVVIGLPIDMSGVVTQQTNIVMKFAEELAK-YTNLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 L V RK R D++AA++IL+ VLD I Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIK 152 >gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis DSM 16047] gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis DSM 16047] Length = 142 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD A + + L + + F++GL Sbjct: 2 RLLGLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + D+ +P + DERLTT+ ++++L++ + RKKR Sbjct: 62 PKNMDGTSGASVARSKAYGKRLEDK-FGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str. Wilmington] gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str. Wilmington] Length = 156 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + +IGLP++M+G + + F + + V +P DERLTT SA Sbjct: 61 NIIEKYQVCGIVIGLPIDMSGGVTKQTNIVMKFADKL-KQSVSLPIYLQDERLTTKSANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L + RK R D++AA++IL+ VL+ I Sbjct: 120 FLKSFGIKRKDRNNNDDAVAASMILEIVLNAIKRF 154 >gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces bingchenggensis BCW-1] Length = 154 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 1/148 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ + I +ID+G RIG+A DP A P + + + L + + + Sbjct: 1 MRRGRRI-AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVV 59 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP +++G EGP R F R VP DER+TTV+A Q L V+ KK Sbjct: 60 VGLPRSLSGREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKG 119 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 VD AA +ILQ L+ + G Sbjct: 120 RSVVDQAAAVVILQSALETERVSGRAPG 147 >gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106] gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106] Length = 149 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D FA L R + +L + + ++GLP +M Sbjct: 13 LGLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSM 72 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ G + + + + + +P + DERLT+ A+Q+L D ++S + +D Sbjct: 73 NGTIGFQAKKVQKYATGLAKA-LDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRK 131 Query: 140 AAALILQEVLDRIS 153 AAA+ILQ+ LD+ Sbjct: 132 AAAIILQQWLDQRR 145 >gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes DSM 40736] gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes DSM 40736] Length = 154 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 63/146 (43%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + + L + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R FV + VP DER+TTV+A Q L V KK Sbjct: 62 LPRSLKGGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ + G Sbjct: 122 VIDQAAAVVILQQALESERVSGKAPG 147 >gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC 6803] gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803] Length = 152 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A +VR Q ++ + N+ ++GLP M Sbjct: 8 LGLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTM 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G G + + F + ++ +++P + DERL++V A+ L +D Sbjct: 68 AGEIGSQAKQVQKFARRVAEQ-LHLPLEYMDERLSSVEAENQLKARKRFSSYDKGLIDQQ 126 Query: 140 AAALILQEVLD-RISFLESS 158 AA +ILQ+ LD R S L+ Sbjct: 127 AAEIILQQWLDLRRSHLQEG 146 >gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147] gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 3/146 (2%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 + D + + D G RIG A D R AHP + + + + I Sbjct: 1 MPDFAA--PASGGCLAFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQE 58 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLP++++GSE R F H + + + +P + DERL++V A+++L + Sbjct: 59 WQPENLIVGLPVHIDGSEHALTRLARKFGHRL-NGRFRLPVYWVDERLSSVYAEELLREN 117 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151 V +K+ +D +AA ILQ D Sbjct: 118 GVRGRKQKPVLDQVAAQAILQSFFDN 143 >gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1] gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPL Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD Sbjct: 73 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131 Query: 138 SIAAALILQEVLDRISFLESSK 159 +AAA ILQ LD + + S Sbjct: 132 KLAAAYILQSCLDVMGGMFSGA 153 >gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum CM4] gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum CM4] Length = 165 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPL Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 77 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD Sbjct: 78 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 136 Query: 138 SIAAALILQEVLDRISFLESSK 159 +AAA ILQ LD + + S Sbjct: 137 KLAAAYILQSCLDVMGGMFSGA 158 >gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC 51908] gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908] Length = 139 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + D GTK IG+AI A+P + E+ I ++GL Sbjct: 3 SQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE + F N I + V DERLTT A+ L +M + + Sbjct: 63 PLNMDGSEQEMTQRAKKFA-NRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQ 121 Query: 136 VDSIAAALILQEVLDRI 152 VD+++A LI++ + + Sbjct: 122 VDAMSAVLIVESYFESL 138 >gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans ATCC 17616] gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans ATCC 17616] gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC 17616] gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC 17616] Length = 149 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 1/148 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ + + NV Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGMRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLE 156 + R +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARTDMLDAEAARVILQQYLDQLSDHE 147 >gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens XB1A] Length = 138 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVSTHELLNF---IGEYMAKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ F Sbjct: 118 ALVDEISATIILQTYLESKRF 138 >gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1] gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1] Length = 156 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 4/145 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G+K IGLA+SD G AH R L R+ + +L+ + + A ++GLPL Sbjct: 2 RVLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 ++GSEG R R F+ + + + +P WDER +T +A++ L++ +VSR KR Sbjct: 62 ELDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKRK 121 Query: 134 QKVDSIAAALILQEVLDRISFLESS 158 Q +D++AA ILQ LD + S Sbjct: 122 QNIDAVAAQFILQGWLDAQARRRES 146 >gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L] gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L] Length = 151 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG+KRIG+A D A + R + +L + T + ++GLP +M Sbjct: 7 LGLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYSM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ G + + + + +P + DERLT+ A+ L S + +D Sbjct: 67 DGTLGFQARKVQKLATRLA-AALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLIDRH 125 Query: 140 AAALILQEVLDRIS 153 AAA+ILQ+ LDR Sbjct: 126 AAAIILQQWLDRRR 139 >gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus Ellin6076] gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus Ellin6076] Length = 140 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 1/139 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 I ++DLG +RIGLAISDP R A P LVR ++ L + + ++ Sbjct: 3 PDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLL 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G P+NM G+EG + R F M +++ VP WDERLT+V A ++L +S +KR Sbjct: 63 GNPINMKGTEGRQSGWVREFATAM-EKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRA 121 Query: 134 QKVDSIAAALILQEVLDRI 152 VD ++A ++LQ LD + Sbjct: 122 AAVDKLSAVILLQSYLDSL 140 >gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37] gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37] Length = 145 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + LK + D GTK IG+A A P + + I Sbjct: 1 MTEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLPLNM+GSE P + F + + + + V DERLTT SA++ + Sbjct: 61 DLIVVGLPLNMDGSEQPITQRAKKFANRL-NGRFGVKVALQDERLTTASAKEFIFTHGGY 119 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 + K+DS++AALIL+ ++ Sbjct: 120 KALEKGKIDSVSAALILESWMEN 142 >gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis ATCC 25196] gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC 25196] Length = 151 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 2/150 (1%) Query: 6 IEDLVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 +E+ K+ +P+ + D G KRIG+AI + AHP L K + + + Sbjct: 1 MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD 60 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 ++GLP++ +G+E +R F H + R + V DER T++SA L + Sbjct: 61 EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQAR-FGIRTVLEDERYTSISASSALDE 119 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISF 154 +V +++ Q +D IAA LILQ D+ + Sbjct: 120 ASVRGRRQKQVLDQIAAQLILQSYFDQRNA 149 >gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis YCH46] gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC 9343] gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46] gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC 9343] gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R] Length = 138 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SD + A+ + ++ + +++ E++ IIGL Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQIIANGLTTVPTHELLDF---ITNYVKQESVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + FV ++ R +P + DER T+V A + +++ + +K R K Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLD 150 VD I+A +ILQ L+ Sbjct: 118 ALVDEISATIILQSYLE 134 >gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM 17244] gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM 17244] Length = 144 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIG 74 + I ++D G RIG+A+SD A + R K + + ++ +I + I+G Sbjct: 2 KKRILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PLN++G G R T F +++ K+ +P WDERL+T A++ L V+ +K+ + Sbjct: 62 HPLNLSGERGTRALVTEEFC-DILKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKRE 120 Query: 135 KVDSIAAALILQEVLDRISFL 155 +D +AA +IL LD + L Sbjct: 121 VIDMMAAQIILSSYLDYNNNL 141 >gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366] gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366] Length = 138 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D GTKRIG+A++DP + A + K + + L ++ E + AF+ G P Sbjct: 3 RILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEY---LKKYLLAEQVEAFVFGDPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 M+G+ + F + +P + DER T+ A Q ++ + ++ R K Sbjct: 60 QMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDRKNKER 119 Query: 136 VDSIAAALILQEVLDRIS 153 VD+I+A +ILQ +++ Sbjct: 120 VDTISATIILQYFMEQHR 137 >gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612] gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612] Length = 178 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + +D+G K IG+A+SDP A R + N+ + GLP Sbjct: 40 ERLLGLDVGDKYIGIAVSDPLGITAQGYRTWKRGTRDDDLAFFTDVVEQFNVTTLVSGLP 99 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +M G+E + TR F + +++ + V+ DERLT+ +++++LI+ V R+KR + + Sbjct: 100 KDMEGNETAQARKTRNFCQ-FLKKRLNLEVVYIDERLTSKASERVLIEGGVRREKRKEYI 158 Query: 137 DSIAAALILQEVLDR 151 D++AA +ILQ LD Sbjct: 159 DTLAAQMILQVYLDS 173 >gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4] gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4] Length = 139 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D GTK IG+AI A P L E+ + I ++GL Sbjct: 3 SASVLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N I + V DERLTT A+ L +M + + Sbjct: 63 PLNMDGTEQEMTQRARKFA-NRISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKGQ 121 Query: 136 VDSIAAALILQEVLDRI 152 VDS++A LI++ + + Sbjct: 122 VDSMSAVLIIESYFENL 138 >gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1346] Length = 140 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SD A + ++ L + + F++GL Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ A+ I +P + DERLTTV A++ L++ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRKK 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD S Sbjct: 121 VIDKLAAVMILQNYLDAHS 139 >gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1] gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1] gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus CTV-05] gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1] gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1] gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus CTV-05] Length = 142 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISD A + + L + + F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR Sbjct: 62 PKNMDGTSGSSVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49] Length = 149 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVSWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R+ +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARVDMLDAEAARVILQQYLDQLSDHEHH 149 >gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4] gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens DM4] Length = 160 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPL Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD Sbjct: 73 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131 Query: 138 SIAAALILQEVLDRISFLESSK 159 +AAA ILQ LD + + S Sbjct: 132 KLAAAYILQSCLDVMGGMFSGA 153 >gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 140 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 I +DLG++ +G+++SD A P + + ++ +I + ++GL Sbjct: 2 RILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG G R + F + + V + WDERLTTV+A++ILI +VSRKKR + Sbjct: 62 PKHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKKV 119 Query: 136 VDSIAAALILQEVLDR 151 +D +AA ILQ LDR Sbjct: 120 IDQMAAVQILQGYLDR 135 >gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis HAW-EB3] gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3] Length = 139 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D GTK IG+AI A+P + E+ I ++GLPL Sbjct: 5 TVLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSE + F N I+ + V DERLTT A+ L +M + +VD Sbjct: 65 NMDGSEQEMTQRAKKFA-NRINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVD 123 Query: 138 SIAAALILQEVLDRI 152 +++A LI++ + + Sbjct: 124 AMSAVLIIESYFENL 138 >gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str. Malish 7] gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7] Length = 154 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +++ + L PN P+ +ID G K++G+A+S+ R A P + LL Sbjct: 1 MIIKNLQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + I + IIGLP++M+G+ + + F + + +P DERLTT +A Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 +L V RK R D++AA++IL+ VLD I + Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154 >gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC 33331] Length = 157 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 62/146 (42%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V L + I+G Sbjct: 5 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP RAF +P DER+TTV+A Q L V KK Sbjct: 65 LPRSLGGGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRS 124 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ L+ S+ G Sbjct: 125 VIDQAAAVVILQNALESERASGSAPG 150 >gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-01] gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-01] gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-03] gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-07] gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-22] gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-26] gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-32] gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO 3283-12] Length = 154 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 2/154 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A + Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I ++G+PL+++GS GP ++R + + ++ +P WDERL++ + + Sbjct: 61 DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSEQ-TGLPVCQWDERLSSSAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +LI + ++SR +R + VD +AAA ILQ LD + Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153 >gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78] gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78] Length = 157 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 62/137 (45%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V + + + ++G Sbjct: 5 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP RAF + VP DER+TTV+A Q L V+ KK Sbjct: 65 LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 124 Query: 135 KVDSIAAALILQEVLDR 151 +D AA +ILQ L+ Sbjct: 125 VIDQAAAVIILQTALES 141 >gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia AU 1054] gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia HI2424] gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia MC0-3] gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia J2315] gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054] gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424] gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3] gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 149 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + + D G KRIG+AI + R A + + + Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R +D+ AA +ILQ+ LD++S E Sbjct: 120 GRARTDMLDAEAARVILQQYLDQLSDHEHH 149 >gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21] gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21] Length = 137 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D GTKRIG+A++DP + A + K V + L +++ E + +F++G+P Sbjct: 2 RIMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEY---LKKYVSQEQVESFVVGMPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 ++GS+ + F++ + +P V DER T+ A + + + R KR +K Sbjct: 59 QLDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGL 118 Query: 136 VDSIAAALILQEVL 149 VD+I+A +ILQ+ L Sbjct: 119 VDAISAVIILQDYL 132 >gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199] gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199] Length = 168 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 2/139 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+I DL + L P + +D GTK IG+A+SD R A P + R+K ++ A E+L Sbjct: 1 MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + NI F++GLPLNM+G+EGPR STR ++ R +P VF DER++T + ++ Sbjct: 61 ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLRH-DLPTVFQDERMSTQAVER 119 Query: 121 ILI-DMNVSRKKRIQKVDS 138 +I + +++R +R + +DS Sbjct: 120 AMISEADLTRGQRKKSIDS 138 >gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 145 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GTK IG+AI A P K T +++ ++ ++G PLN Sbjct: 6 IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P S R F H + R+ + VF DERL+T A+ L D + VD+ Sbjct: 66 MDGTEQPITESARQFGHALY-RRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124 Query: 139 IAAALILQEVL 149 +A +IL+ Sbjct: 125 TSAVIILESWF 135 >gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286] Length = 141 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++D GTKR G+A+SD + A+ + + L +++ E++ I+GL Sbjct: 1 MGRFLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTL---FDYLKTYLEREDVECIIVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + R FV + + +P +DER T+ AQ+ +ID + +K R K Sbjct: 58 PKQMNNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD I+A +ILQ ++ + Sbjct: 118 ALVDEISAVIILQSYMESLR 137 >gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis V583] gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712] gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613] gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1] gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11] gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248] gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855] gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134] gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860] gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109] gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411] gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0470] gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0635] gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 512] gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 516] gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0102] gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis V583] gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712] gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613] gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1] gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11] gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411] gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109] gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860] gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134] gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855] gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248] gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 512] gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0102] gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0635] gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis DAPTO 516] gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0470] gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX2137] gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX4000] gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0017] gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0027] gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX2141] gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX4244] gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0012] gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0031] gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0043] gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0312] gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0645] gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1302] gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1341] gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0309B] gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0630] gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX0309A] gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis OG1RF] gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467] Length = 140 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SD A + ++ L + + F++GL Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR + Sbjct: 62 PKNMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD S Sbjct: 121 VIDKLAAVMILQNYLDAHS 139 >gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str. Tucson] gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str. Tucson] Length = 140 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ + + D G+K IG AI A + + ++ + ++GL Sbjct: 3 NRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE P R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGSEQPVTEQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VDS +A +IL+ R Sbjct: 122 VDSASAVVILESWFGR 137 >gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis SB2B] gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B] Length = 139 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A+ A+P + ++ I +IGL Sbjct: 1 MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + + + V DERLTT A+ L ++ + + Sbjct: 61 PLNMDGTEQEMTQRARKFANRL-NGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQ 119 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 120 VDAVSAVLIVESYFEN 135 >gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10] Length = 142 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD A + + L + + F++GL Sbjct: 2 RLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR Sbjct: 62 PKNMDGTSGASVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C] gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C] Length = 158 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L+ + +ID+G RIG+A DP A P + + + L + Sbjct: 1 MTMTLRRGRR-LAIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEP 59 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP +++G EGP RAF + + V DER+TTV+A Q L + Sbjct: 60 LEVVVGLPRSLSGREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRN 119 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 KK +D AA +ILQ L+ Sbjct: 120 AKKGRSVIDQAAAVVILQNALE 141 >gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001] gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001] Length = 154 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A + Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 T I ++G+PL+++GS GP ++R + + ++ +P WDERL++ + + Sbjct: 61 DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSEQ-TGLPVCQWDERLSSSAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +LI + ++SR +R + VD +AAA ILQ LD + Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153 >gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 140 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D GTK IG AI A + + ++ + ++GL Sbjct: 3 NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R V DERL+TV A+ L D R Sbjct: 63 PLNMDGTEQLVTDQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121 Query: 136 VDSIAAALILQEVLDRIS 153 VDS +A +IL+ +R Sbjct: 122 VDSASAVVILESWFERQR 139 >gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65] gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65] Length = 154 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 1/143 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GTKR+G+A+ + A + K +L + + F++GLP Sbjct: 11 KRVMGFDFGTKRMGVAMGQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQPDGFVVGLP 70 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NM+GSE F + R +P DERLTT A+ I + V Sbjct: 71 FNMDGSESDMSRRANKFSKRLHGR-YGLPSYTIDERLTTFEAKHIARQQGHKGHYKSDPV 129 Query: 137 DSIAAALILQEVLDRISFLESSK 159 D +AA IL+ L E S+ Sbjct: 130 DELAAQFILETWLSEFPLSEQSQ 152 >gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis TX1342] Length = 140 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G++ +G+A+SD A + ++ L + + F++GL Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR + Sbjct: 62 PKNMNNSIGPRAEASIAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D +AA +ILQ LD S Sbjct: 121 VIDKLAAVMILQNYLDAHS 139 >gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1] gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1] Length = 148 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTKRIG+A+ + A P + +K + + AA ++GL Sbjct: 7 SGTLLAFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPAALVVGL 66 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P N +G+ +R F + + R +P + DER T+ +A L + +K+ Sbjct: 67 PCNDDGTPHEMTALSRRFANRLKGR-FNLPTLLIDERYTSAAASSALDKEGIHGRKQKNL 125 Query: 136 VDSIAAALILQEVLDRISF 154 +D AA ILQ D S Sbjct: 126 IDQYAAQQILQAYFDEPSA 144 >gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus MTCC 5463] Length = 142 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD A + + L + + F++GL Sbjct: 2 RLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR Sbjct: 62 PKNMDGTSGASVTRSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens AM1] gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens AM1] Length = 165 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPL Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 77 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEGPR S+R+F N+ +F+DERL+T + + L++ + SR +R + VD Sbjct: 78 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLLEADASRARRGELVD 136 Query: 138 SIAAALILQEVLDRISFLESSK 159 +AAA ILQ LD + + S Sbjct: 137 KLAAAYILQSCLDVMGGMFSGA 158 >gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071] gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071] Length = 154 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 62/137 (45%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V + + + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP RAF + VP DER+TTV+A Q L V+ KK Sbjct: 62 LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121 Query: 135 KVDSIAAALILQEVLDR 151 +D AA +ILQ L+ Sbjct: 122 VIDQAAAVIILQTALES 138 >gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 161 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 1/151 (0%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + +++ + ++D+G RIG+A DP A P + + V L + Sbjct: 5 MTAMRRGRR-LAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPI 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++GLP ++ G EGP R F VP DER+TTV+A Q + V Sbjct: 64 EVVLGLPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKS 123 Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160 KK +D AA +ILQ L+ + G Sbjct: 124 KKGRSVIDQAAAVVILQNALESERASGNPPG 154 >gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium TW-7] gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium TW-7] Length = 149 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 3/144 (2%) Query: 10 VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 ++ KP + + D GTK IG+A+ A + + + + Sbjct: 3 KRTFKPQGERTVMGFDFGTKSIGIAVGQELTGSASSLKAVKAQDGIPNWDHIAVQVNEWQ 62 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++GLPLNM+G+ + F + + + +P DERLTT A+ L + Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIPVQTQDERLTTADAKARLFEQGG 121 Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151 + VD+++A +IL+ + Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145 >gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 158 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L+ + +ID+G RIG+A DP A P + + V L + Sbjct: 1 MTMTLRRGRR-LAIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEP 59 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP +++G EGP RAF + V DER+TTV+A Q L + Sbjct: 60 LEVVVGLPRSLSGREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKN 119 Query: 129 RKKRIQKVDSIAAALILQEVLD 150 KK +D AA +ILQ L+ Sbjct: 120 AKKGRSVIDQAAAVVILQNALE 141 >gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4] gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4] Length = 168 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 1/143 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I S+D G K IGLA++D A P L + + +L I ++ I+GLP Sbjct: 24 AILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPR 83 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS GP R FV + + + +P F DERLTT A ++L + +++ +K+D Sbjct: 84 NMDGSYGPAAEKVRQFVLKL-KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKID 142 Query: 138 SIAAALILQEVLDRISFLESSKG 160 S AAA+ILQ LD + G Sbjct: 143 SYAAAVILQSYLDVLPLKGKRAG 165 >gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas haloplanktis TAC125] gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas haloplanktis TAC125] Length = 149 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 3/143 (2%) Query: 10 VKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 K+ KP + + D GTK IG+AI A + + ++ + Sbjct: 3 KKNFKPQGQRTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDDIAVQVNEWQ 62 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++GLPLNM+G+ + F + + + +P DERLTT A+ L + Sbjct: 63 PDLMVVGLPLNMDGTAQEVTFKAKKFANRLHN-HYAIPVETQDERLTTADAKARLFEQGG 121 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 + KVD+++A +IL+ + Sbjct: 122 YKNLGKGKVDNMSAVIILESFFE 144 >gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina NCIMB 400] gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB 400] Length = 139 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+AI A P + ++ + ++GLP Sbjct: 4 QTVLGFDYGTKSIGVAIGQAITASATPLLSIKAVDGIPNWDDIDKLLKEWQPDLVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E R F N I+ + V DERLTT A+ L ++ + +V Sbjct: 64 LNMDGTEQEMTQRARKFA-NRINGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQV 122 Query: 137 DSIAAALILQEVLDR 151 D+++A LI++ + Sbjct: 123 DAVSAVLIIESYFEN 137 >gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7] gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7] Length = 140 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G R G+A+SD A P + + A ++ + I+GLP+ Sbjct: 2 RILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG++G R F +M+ V V WDER TTV+A + L + NV KKR VD Sbjct: 62 NMNGTKGVRAEKCEEFA-DMLRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVVD 120 Query: 138 SIAAALILQEVL 149 ++AA +IL+ L Sbjct: 121 TVAATIILESYL 132 >gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011] gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011] Length = 139 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP + A+ + + L + E++ IIGL Sbjct: 1 MGRILAIDYGRKRTGIAVTDPMQIIANGLTTVRTHDLMDF---LTDYTQKESVEKIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P M+ + + FV N + +P + DER T+V AQ+ +I+ + +K R K Sbjct: 58 PKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD ++A +ILQ L+ Sbjct: 118 ALVDEVSATIILQTYLENKRLF 139 >gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989] gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989] Length = 141 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 4/138 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +DLG+K G++I D + + A E+L + + ++GL Sbjct: 3 RIIGLDLGSKTCGVSICDALHITCRALTTVRFESDDYDACLEEVLKLLQENKVKEVVLGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG G R + F + + WDERLTTV+A++IL+ +VSRKKR + Sbjct: 63 PKHMNGDIGIRGEISCEFAKKL--ESSGIKVHLWDERLTTVAAEKILLQGDVSRKKRKKV 120 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ LDR + Sbjct: 121 IDQMAAVQILQSFLDRQN 138 >gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli] Length = 139 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + + + D G K IG+AI A P L KK E+ + + + Sbjct: 1 MPETKTVIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P NM+G+E P R F+ + +R +P DERLTTV A+ L + + + Sbjct: 61 VGVPFNMDGTEQPITREARNFLMELKNR-FEIPVFPVDERLTTVEARSRLFALGGYKALK 119 Query: 133 IQKVDSIAAALILQEVLDR 151 + +DSIAA LI++ L+ Sbjct: 120 KKSIDSIAAQLIVEIWLEN 138 >gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485] gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485] Length = 142 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q I +D+G +RIG+AISD R A P + + ++ + + ++GL Sbjct: 3 EQTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL M G GP+ + + FV + + P +DERLT+V+A+Q+L ++ V K ++ Sbjct: 63 PLTMRGEHGPQAAAIQRFVDALA-AVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQ 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA++ILQ+ LD Sbjct: 122 IDQVAASIILQDYLD 136 >gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii SJ-7A-US] gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153] gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153] gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus jensenii SJ-7A-US] gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1] Length = 148 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+AISD A + + + + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKLVREYDVTGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRI 133 P NM+GS+G V ++ + + D+ +P + DERLTT+ A ++LI+ RKKR Sbjct: 62 PKNMDGSDGVSVSRSKNYGKRLEDK-FSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ LD Sbjct: 121 EVIDQMAAVLILQNYLD 137 >gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34] gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34] Length = 143 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + D GTK IG+AI A P L K ++ + + Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60 Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLPL++ G E + F + + R DERL+TV A+ L + R Sbjct: 61 VGLPLDLKGKELESITPRAKKFANRLHGR-FGCQVELHDERLSTVEAKAELFERGGYRSL 119 Query: 132 RIQKVDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 120 SKGNIDSQSAVVILESWFER 139 >gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9] gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9] Length = 158 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+KR+G+A D A + RK + E+ + + ++G+P + Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSR 72 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F + + + +P + DERLT+ A+Q+L+ N S VD Sbjct: 73 DGSIGEQARRIQKFANRLAK-TLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRK 131 Query: 140 AAALILQEVLD 150 AA++ILQ+ LD Sbjct: 132 AASIILQQWLD 142 >gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC 700345] gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345] Length = 141 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+AI A P + E+ + IT ++GL Sbjct: 3 DKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N I + V DERLTT A+ L +M + + Sbjct: 63 PLNMDGTEQEMTQRARKFA-NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQ 121 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 122 VDAMSAVLIVESYFEN 137 >gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136] gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136] Length = 138 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A+SDP + A + Q LL++I E + IIG Sbjct: 1 MSRILAIDYGRKRTGIAVSDPLQIIASGLTTVPTH---QLMDFLLNYIKQEQVECIIIGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +N + + + F++ + +P DER T+V A Q ++ + +K R K Sbjct: 58 PKQLNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD I+A +ILQ L+ Sbjct: 118 ALVDEISATIILQSYLESRR 137 >gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC 7002] gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday junction resolvase [Synechococcus sp. PCC 7002] Length = 144 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + R + + +I +I ++GLP M Sbjct: 7 LGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + T+ F + + +P + DERLT+V A+ L +++ VD Sbjct: 67 DGSLGKQAKQTQKFARKLAEA-FGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQR 125 Query: 140 AAALILQEVLD 150 AA +ILQ+ L+ Sbjct: 126 AAQIILQQWLE 136 >gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 142 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K IG+A+SDP A + + L + F++GL Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+G+ G V ++A + ++K +P + DERLTTV++++IL+ + + R++R Sbjct: 62 PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120 Query: 134 QKVDSIAAALILQEVLD 150 + VD +AA LILQ LD Sbjct: 121 EVVDQMAAVLILQNYLD 137 >gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 142 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 2/140 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + D GTK IG+AI A P + + + + Sbjct: 1 MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60 Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLPL++ G E + F N + + DERL+TV A+ L + R Sbjct: 61 VGLPLDLEGKELETITPRAKKFA-NRVHGRFGCQVELHDERLSTVEARAELFERGGYRSL 119 Query: 132 RIQKVDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 120 SKGNIDSQSAVVILESWFER 139 >gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424] gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424] Length = 151 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KR+G+A D A + R + + +I ++GLP +M Sbjct: 8 LGLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSM 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ G + + + + + +P + DERLT+ A++ L VD Sbjct: 68 NGTLGSQAKQVQNYATRLAKA-LQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQ 126 Query: 140 AAALILQEVLDRISFLE 156 AAA+ILQ+ LD+ L Sbjct: 127 AAAIILQQWLDQRRSLR 143 >gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae D-4968] gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150] gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae D-4968] gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150] Length = 139 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ D G KRIG+A+ A P L + + I + A ++G Sbjct: 2 PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P ++GSE R F + R V +P DERL+TV+A++ L RK + Sbjct: 62 IPTCIDGSELYTTVPARRFAQELHKRFV-LPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120 Query: 135 KVDSIAAALILQEVL 149 +VDS+AA +IL++ L Sbjct: 121 EVDSVAACVILEQWL 135 >gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans 2-40] gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40] Length = 142 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q + + D GTKRIG A+ A+ + K+ + + + I+GL Sbjct: 3 SQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F N I + VP +DERLTT A+++ + Sbjct: 63 PLNMDGTENELCRRAKKFG-NRIHGRFRVPVEMFDERLTTREAKELAWEEGHKGNYANDP 121 Query: 136 VDSIAAALILQEV 148 VDSIAA LIL+ Sbjct: 122 VDSIAARLILESW 134 >gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 142 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K IG+A+SDP A + + L + F++GL Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+G+ G V ++A + ++K +P + DERLTTV++++IL+ + + R++R Sbjct: 62 PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120 Query: 134 QKVDSIAAALILQEVLD 150 + VD +AA LILQ LD Sbjct: 121 EVVDQMAAVLILQNYLD 137 >gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333] gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333] Length = 163 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 66/141 (46%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+ R+G+A DP A P L R+ E+ + ++ +IGLP + Sbjct: 3 LGVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRAL 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG RA+ + VP DERL+TV+A + + + + ++ + VD Sbjct: 63 DGHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQA 122 Query: 140 AAALILQEVLDRISFLESSKG 160 AA +ILQ LD + G Sbjct: 123 AAVVILQSALDAERATGAPPG 143 >gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum SS9] gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 142 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+AI A+P L K ++ + ++GL Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PLN+ G E + F N I + DERL+TV A+ L + R Sbjct: 64 PLNLEGGELESITPRAKKFA-NRIHGRFGCVVELHDERLSTVEAKAELFEHGGYRALSKG 122 Query: 135 KVDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 123 NIDSQSAVVILESWFER 139 >gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158] gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158] Length = 149 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + + D G KRIG+AI + R A + + + A ++G Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ + F + + + + +P + DER ++V A+ L + NV + R+ Sbjct: 67 LPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVD 125 Query: 135 KVDSIAAALILQEVLDRISFLESS 158 +D+ AA +ILQ+ LD++S E Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149 >gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl] gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl] gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl] gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl] Length = 153 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q I ++D+G +RIG+AISD R A P + + +++ + ++ ++GL Sbjct: 3 DQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL M G GP+ + F + + P +DERLT+V+A+Q+L ++ + K + Sbjct: 63 PLTMRGERGPQAEVVQRFADTLSSA-LSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQ 121 Query: 136 VDSIAAALILQEVLD 150 +D +AA++ILQ+ LD Sbjct: 122 IDQVAASIILQDYLD 136 >gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii L2-63] Length = 141 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I S+DLG R G+A+ D A P + K Q ++ + ++GLP N Sbjct: 3 IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQLLEKVSNTAKETKAELIVVGLPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GSEG + RAF N+ + + V DER TT++A L N KKR VD Sbjct: 63 MDGSEGESAQNARAFAENLSNE-TGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVDE 121 Query: 139 IAAALILQEVLDRIS 153 +AA +ILQ+ LD+ Sbjct: 122 VAATIILQDYLDKRK 136 >gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens CN-32] gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32] Length = 141 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+AI A P L ++ I ++GL Sbjct: 3 SKTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E H R F N I+ K V V DERLTT A+ L ++ + + Sbjct: 63 PLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQ 121 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 122 VDAVSAVLIIESYFEN 137 >gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL J2-064] Length = 124 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88 +AISDP A + + + + + + ++GLP NMN + GPR Sbjct: 1 VAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAE 60 Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148 S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D +AA +ILQ Sbjct: 61 SSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSY 119 Query: 149 LDRIS 153 LD + Sbjct: 120 LDTTN 124 >gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp. MED92] gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp. MED92] Length = 158 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GT+RIG+A A P L+ K E+ I+ A ++G+PLN Sbjct: 9 LAFDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGIPLNA 68 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+ H R F + + +R P DERL+T A++I S R + VD I Sbjct: 69 DGTISDMAHRARKFANRLHER-YKTPCFLMDERLSTAEAKEIHFASGGSDNFREESVDGI 127 Query: 140 AAALILQEVLD 150 AA LIL+ + Sbjct: 128 AAQLILESWFN 138 >gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens SBW25] gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6] gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens SBW25] gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6] Length = 145 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQKVD 137 M+G+ F + + + +PF DERLTT A+ D R VD Sbjct: 66 MDGTPSDMCLRAEKFARRL-NGRYNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFLESS 158 +IAAAL+LQ LD + L S Sbjct: 125 AIAAALLLQGWLDENTALFES 145 >gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74] gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74] Length = 142 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID G KR G+A++DP + A + +V + L +++ E + AF++GL Sbjct: 1 MARLLAIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKF---LKAYLVREPVEAFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++G + R FV ++ + +P + DER T+V A Q +I ++K R +K Sbjct: 58 PKGLDGEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREK 117 Query: 136 --VDSIAAALILQEVLDR 151 +D ++AA+ILQ ++R Sbjct: 118 GNIDKVSAAIILQSYMER 135 >gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus XylebKG-1] gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus XylebKG-1] Length = 154 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 60/146 (41%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G RIG+A DP A P + + V L + ++G Sbjct: 2 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F VP DER+TTV+A Q + V KK Sbjct: 62 LPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ L+ + G Sbjct: 122 VIDQAAAVVILQNALESERASGNPPG 147 >gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114] Length = 151 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G RIG+ D HP + + + + F++G Sbjct: 5 PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila] Length = 140 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI P + ++ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + R F DERLTT A+ L + R Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGRFWQA-VEFKDERLTTTDARARLFERGGYRALEKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD ++A LIL+ ++ Sbjct: 122 VDGVSAQLILEAWMEE 137 >gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae subsp. damselae CIP 102761] Length = 141 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 2/140 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + + D GTK IG+AI A P L + + + + + Sbjct: 1 MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60 Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLPL+M+G E + F + + R DERL+T A+ L + R Sbjct: 61 VGLPLDMSGHELETITPRAKKFANRLHGR-FGCQVELHDERLSTAEARAELFEFGGYRNL 119 Query: 132 RIQKVDSIAAALILQEVLDR 151 +DS +A +IL+ + Sbjct: 120 SKGNIDSQSAVVILESWFEN 139 >gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida subsp. multocida str. Pm70] gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 140 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D GTK IG A+ A P + + + ++GL Sbjct: 2 GMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F H + R V DERLTT A+ + + K Sbjct: 62 PLNMDGTEQDLTVRARKFAHRLHGR-FGVAVELQDERLTTTEARAEIFGRGGYKALNKSK 120 Query: 136 VDSIAAALILQEVLDR 151 VD I+A LIL+ + Sbjct: 121 VDGISACLILESWFEN 136 >gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon 078 str. F0262] Length = 254 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 4/134 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74 I +D G K IG+A++DP A P + R+ K+ ++ E+ + ++ ++ +IG Sbjct: 2 RIMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+ +EG R R F + R + VP + DERLTT++A++IL + V R+++ + Sbjct: 62 LPLNMDETEGERAEKAREFAALLAKRVL-VPIEWVDERLTTIAAREILDESGVPREEQKR 120 Query: 135 KVDSIAAALILQEV 148 +D +AA LIL+ Sbjct: 121 MIDQVAAQLILETW 134 >gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM 13941] gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM 13941] Length = 146 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 1/134 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+G +RIG+A+SDP R A P + K + S I ++AA ++GLP Sbjct: 7 GRVMALDVGEQRIGVALSDPTRTLATPLTTIRAKPRATALKRIASLIREHDVAALVVGLP 66 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L M+G GP+ + FV + R + +P F DERLTTV+A++++ID+ + ++R ++ Sbjct: 67 LTMSGDVGPQAALVQQFVEEL-RRAIAIPLTFVDERLTTVAAERMMIDLKLKPEQRKARI 125 Query: 137 DSIAAALILQEVLD 150 D +AA++ILQ+ LD Sbjct: 126 DEVAASIILQDFLD 139 >gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2] gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2] Length = 137 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +DLG+K +G+++SD A P + ++ +I + ++GL Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR + Sbjct: 62 PKHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKKI 119 Query: 136 VDSIAAALILQEVLDR 151 +D +AA ILQ LD Sbjct: 120 IDQMAAVQILQSYLDS 135 >gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis HAW-EB4] gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4] Length = 140 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+AI A P + E+ + IT ++GL Sbjct: 3 DKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F N I + V DERLTT A+ L +M + + Sbjct: 63 PLNMDGTEQEMTQRARKFA-NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQ 121 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 122 VDAMSAVLIVESYFEN 137 >gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1] gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1] gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200] Length = 141 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GTK IG+AI A P L ++ I ++GLP Sbjct: 4 KTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+E H R F N I+ K V V DERLTT A+ L ++ + +V Sbjct: 64 LNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122 Query: 137 DSIAAALILQEVLDR 151 D+++A LI++ + Sbjct: 123 DAVSAVLIIESYFEN 137 >gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Eubacterium saburreum DSM 3986] gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Eubacterium saburreum DSM 3986] Length = 145 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFI 72 + I +D G+K IG+AISD A P + R K + + ++ + +NI + Sbjct: 4 KERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIV 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP+NMNG G RV T FV + ++V VP + DERLTTV A +IL + V ++ R Sbjct: 64 VGLPVNMNGRRGKRVSLTLEFVEKL-KQRVDVPIIMQDERLTTVEADEILDESGVKKENR 122 Query: 133 IQKVDSIAAALILQEVLDRIS 153 Q +D +AA +IL+E +++ + Sbjct: 123 KQFIDMVAAGIILREYMEKEN 143 >gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis ATCC BAA-1200] gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis ATCC BAA-1200] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 1/146 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G KRIG+A AHP L Q + + I ++G Sbjct: 8 PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E R F + +R +P F DER T++ A+ +L + V +K+ Sbjct: 68 LPVHSDGTEHELTRLARKFGRRLHER-FALPVYFADERHTSLLAESLLAEAQVFGRKQKS 126 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +DS+AA +IL + D + + G Sbjct: 127 VLDSVAAQVILFDFFDSGAVERLNGG 152 >gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL 15998] gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL 11379] gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 157 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 60/146 (41%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G RIG+A DP A P + + V L + I+G Sbjct: 5 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F VP DER+TTV+A Q + V KK Sbjct: 65 LPRSLGGGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 124 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ L+ + G Sbjct: 125 VIDQAAAVVILQNALESERASGNPPG 150 >gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155] gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185] gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195] gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223] gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183] gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175] gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155] gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185] gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195] gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223] gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183] gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175] gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678] Length = 141 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+AI A P + ++ I ++GL Sbjct: 3 SKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E H R F N I+ K V DERLTT A+ L ++ + + Sbjct: 63 PLNMDGTEQDMTHRARKFA-NRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQ 121 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 122 VDAVSAVLIIESYFEN 137 >gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 142 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K IG+A+SDP A + + L + F++GL Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+G+ G V ++A + ++K +P + DERLTTV++++IL+ + + R++R Sbjct: 62 PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120 Query: 134 QKVDSIAAALILQEVLD 150 + VD +AA LILQ LD Sbjct: 121 EVVDQMAAVLILQNYLD 137 >gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004] gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004] Length = 141 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 N+ I + D GT IG AI A K+ + + + + I+G Sbjct: 2 KNRTIIAFDFGTHSIGTAIGQEITGTARALSAFKAKEGSPSWELIEKLLKEWQPDLIIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+E R F + + R V DERLTT+ A+ L D + Sbjct: 62 LPLNMDGTEQLVTAQARKFANRLHGR-FGVQVELHDERLTTIEARSHLFDHGGYKALDKG 120 Query: 135 KVDSIAAALILQEVLDR 151 KVDS++A +IL+ ++ Sbjct: 121 KVDSVSAVVILESWFEQ 137 >gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21] gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21] Length = 162 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 16/148 (10%) Query: 21 SIDLG---------------TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 ++D G TK IG+A D G RFA + R K T +L +T Sbjct: 12 ALDYGNALPDGGALLGLDLGTKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTA 71 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 +IA ++GLP NM+G+EGPR ++RA+ N+ R +P + WDER +T SA+ +I Sbjct: 72 RSIAGLVVGLPRNMDGTEGPRAQASRAYAKNLA-RAFGLPVLLWDERWSTSSAESAMIGQ 130 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++SR KR +K+DS AAA+ILQ +D ++ Sbjct: 131 DMSRAKRAEKIDSHAAAVILQGAIDTLA 158 >gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis JLW8] gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8] Length = 156 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D G +RIG+A+ + A+P + + + ++ ++GL Sbjct: 17 SGTVLAFDFGERRIGIAVGEHLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVGL 76 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+++GSE + F + + + +P DER ++ A Q+L + + + + + Sbjct: 77 PLSLDGSEHGVTQLCKKFARRL-NGRFNLPVALIDERYSSAEASQLLNEAGIRGRAQKEM 135 Query: 136 VDSIAAALILQEVLDRIS 153 +D +AA ILQ D+ S Sbjct: 136 LDQVAAQTILQSYFDQAS 153 >gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia succiniciproducens MBEL55E] gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 140 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG A+ A P + + + ++GLPLNM Sbjct: 8 LAFDFGTKSIGCAVGQSITGTAQALPAFKAQNGIPNWDSIEKCLKEWKPDILVVGLPLNM 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E R F + + R V DERLTT A+ + + KVD I Sbjct: 68 DGTEQEFTSRARKFANRLHGR-FGVKVELQDERLTTTEARTEIFQRGGYKALNKSKVDGI 126 Query: 140 AAALILQEVLDRIS 153 +AALIL+ +R S Sbjct: 127 SAALILESWFERHS 140 >gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455] gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455] Length = 140 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+GT RIG+A+SDP FA EL + ++GLP+ Sbjct: 3 RIICLDVGTVRIGVAVSDPLGMFAQGIAVWKADGPWLD--ELERAFERYDTGCLLVGLPI 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G+ GP + V + R V +WDER +T +A L++ NVSR+KR Q VD Sbjct: 61 REDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQSVD 120 Query: 138 SIAAALILQEVLD 150 IAAA+ILQ +D Sbjct: 121 KIAAAVILQSYMD 133 >gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12] gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12] Length = 140 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D GTK IG+AI A+P + E+ I ++GLPL Sbjct: 5 TVLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E + F N I + V DERLTT A+ L ++ + +VD Sbjct: 65 NMDGTEQEITQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123 Query: 138 SIAAALILQEVLDRI 152 +++A LI++ + + Sbjct: 124 AMSAVLIIESYFETM 138 >gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99] gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99] Length = 140 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D GTK IG+AI +P + E+ I ++GLPL Sbjct: 5 TVLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E + F N I + V DERLTT A+ L ++ + +VD Sbjct: 65 NMDGTEQEMTQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123 Query: 138 SIAAALILQEVLDRI 152 +++A LI++ + + Sbjct: 124 AMSAVLIIESYFENL 138 >gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens] gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 145 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 6 LLGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + +PF DERLTT A+ + L+ R VD Sbjct: 66 MDGTPSDMCLRAEKFARRL-NGRYNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD + L Sbjct: 125 AIAAALLLQGWLDANAAL 142 >gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium K411] gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium K411] Length = 155 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 59/137 (43%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +D+GT RIG+AISDP A P + ++ + ++ Sbjct: 12 PGRGRRLGLDVGTVRIGVAISDPDCILATPVETIQATADDADVQRVVEICRDNFVVEIVV 71 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+ + G+ + F + + +P DER++T++A V+ KK Sbjct: 72 GLPVALRGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGR 131 Query: 134 QKVDSIAAALILQEVLD 150 +K+D AA ILQ LD Sbjct: 132 KKIDQAAAVHILQGWLD 148 >gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase Length = 139 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + R +P DERL+TV A+ L + R+ + Sbjct: 62 LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 121 EVDSIAACVILEQWLQQ 137 >gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila str. Paris] gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris] Length = 139 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + R +P DERL+TV A+ L + R+ + Sbjct: 62 LPTCIDDRELYTTSAARHFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 121 EVDSIAACVILEQWLQQ 137 >gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1] gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1] Length = 175 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 1/142 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFI 72 +D+GT RIG+A+SDP A P + R K+ T+ L + + + + Sbjct: 23 PGRGRRLGVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVV 82 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP + G + R VP DER TTV+AQ+ L + V + + Sbjct: 83 VGLPRTLADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQ 142 Query: 133 IQKVDSIAAALILQEVLDRISF 154 +D AA ILQ LD+ Sbjct: 143 RSVIDQAAAVGILQNWLDQRRA 164 >gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis UMN179] gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis UMN179] Length = 139 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N + + D GT+ IG A+ + A P + + + ++GL Sbjct: 3 NLTVIAFDFGTQSIGCAVGQSITQTAQALPAFKAQDGIPNWDAIKKCLDEWKPDLVVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F + + + + V DERLTT A+ + R K Sbjct: 63 PLNMDGTEQEITQRARKFANRL-NGRFGVKIALQDERLTTTEARAEIFSRGGYRALNKGK 121 Query: 136 VDSIAAALILQEVLDR 151 +DSI+A LIL+ + Sbjct: 122 IDSISACLILESWFEN 137 >gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia vietnamiensis G4] gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4] Length = 149 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 1/150 (0%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + D G KRIG+A+ + R A + + + Sbjct: 1 MSGASARDATFLAFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158 + R +D+ AA +ILQ+ D +S E Sbjct: 120 GRARTDMLDAEAARVILQQYFDELSDHEHH 149 >gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium D16] gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium D16] Length = 140 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID G G+AISDP A + +K EL + + ++G P Sbjct: 2 RVMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGPR R F + + + V WDER TTV A +IL + + KKR + VD Sbjct: 62 NMDGTEGPRAQLYRDFAAQVA-QATGLEPVLWDERRTTVDAHRILAEGGKNAKKRKKTVD 120 Query: 138 SIAAALILQEVLD 150 ++AA+LIL+ LD Sbjct: 121 AVAASLILEGYLD 133 >gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9] gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9] Length = 143 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 I ++D+G RIG+A++DP A P L RK + A LL I + ++G P Sbjct: 4 GRIMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQK 135 L+++G P F + +R +P WDERL++V+A +IL + +R K R Sbjct: 64 LHLSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFI 122 Query: 136 VDSIAAALILQEVL 149 +D +AA LIL+ + Sbjct: 123 IDQVAAVLILEGWM 136 >gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp. SA3_actG] gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp. SA3_actF] Length = 154 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 61/137 (44%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 +ID+G RIG+A DP A P + + V + + + ++G Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EG RAF + VP DER+TTV+A Q L V+ KK Sbjct: 62 LPRSLRGGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121 Query: 135 KVDSIAAALILQEVLDR 151 +D AA +ILQ L+ Sbjct: 122 VIDQAAAVIILQTALES 138 >gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum IMS101] gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101] Length = 149 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KR+G+A D A + R + +L + + I+GLP +M Sbjct: 9 LGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSM 68 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NGS G + + + + + + +P + DERLT+V A+++L N+S + +D Sbjct: 69 NGSIGFQAKKVQRYAQRL-SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRK 127 Query: 140 AAALILQEVLDRIS 153 AAALILQ+ LD Sbjct: 128 AAALILQQWLDERR 141 >gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales bacterium ALC-1] gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales bacterium ALC-1] Length = 137 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR GLA++D + A + K++ L +++ TE++ F++GL Sbjct: 1 MGRILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPF---LKNYVDTESVEKFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P M+ + + F+ + ++P DER T+ A Q +ID + +K+R K Sbjct: 58 PKQMDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 +D I+A LILQ L S Sbjct: 118 ALIDEISATLILQSYLTSQS 137 >gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b] Length = 142 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + R +P DERL+TV A+ L + R+ + Sbjct: 65 LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 124 EVDSIAACVILEQWLQQ 140 >gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1] gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 11V1-d] gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 09V1-c] gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 03V1-b] gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 01V1-a] gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 2503V10-D] gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 3008A-a] gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2062A-h1] gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2052A-d] gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2053A-b] gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC 55195] gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 143-D] gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B] gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 1401G] gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 11V1-d] gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 09V1-c] gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 03V1-b] gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV 01V1-a] gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 2503V10-D] gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2053A-b] gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2052A-d] gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 2062A-h1] gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF 3008A-a] gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC 55195] gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 143-D] gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B] gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN 1401G] Length = 143 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SD A + + + + ++ F++GL Sbjct: 2 RLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133 P NM+G+ G + + K +P + DERLTT+ A++IL+ + +S R R Sbjct: 62 PKNMDGTCGESAQRCLDYGERL-KAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARK 120 Query: 134 QKVDSIAAALILQEVLD 150 + +D +AA LILQ L+ Sbjct: 121 KIIDQMAAVLILQNFLE 137 >gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 140 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 2/134 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G KRIG+AI+D R A P + + + AL++L +++ ++GLPL Sbjct: 3 RIMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPL 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136 NMNG+EG + R F+ I + DERLTTV A+++LI + ++SR+KR Sbjct: 63 NMNGTEGGMAETVRKFIEK-IKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKGIK 121 Query: 137 DSIAAALILQEVLD 150 D + AALILQ LD Sbjct: 122 DKVVAALILQTYLD 135 >gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054] Length = 157 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 3/150 (2%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 K + + I ++D+G RIG+A+ DP A P + +Q L + + + Sbjct: 4 KVFRRGRRI-AVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQ--ARLKAIVEEYDAVE 60 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLP ++NG EGP R + + V DER+TTV+A L S K Sbjct: 61 VVVGLPRSLNGKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSK 120 Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160 K +D AA +ILQ L+ + G Sbjct: 121 KGRSVIDQAAAVVILQSALETERVSGRAPG 150 >gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium HTCC2181] gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium HTCC2181] Length = 148 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 +++PN + + D G K+IG+AI + + AHP + + K ++ + + + Sbjct: 8 SNIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLETIRKVKKSERIEIIENLLNEWEPGI 67 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLPLN +G+E + F + +R VP V DER T+V A+ +L + S K Sbjct: 68 VVVGLPLNEDGTESRLTLLAQNFAKKIKNR-FQVPIVMVDERYTSVEAKILLNENVKSIK 126 Query: 131 KRIQKVDSIAAALILQEVLDR 151 K Q +D +AA +IL DR Sbjct: 127 KGNQVIDQVAAQIILGSYFDR 147 >gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39] gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39] Length = 138 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D GTKR+G+A++DP + A + K + + L ++ TE + AF+IG P Sbjct: 3 RILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEY---LKKYLLTEQVEAFVIGDPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 M+GS + F + +P + DER T+ A Q ++ + ++ R K Sbjct: 60 QMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDRKDKSR 119 Query: 136 VDSIAAALILQEVLDR 151 VD+IAA +ILQ +++ Sbjct: 120 VDTIAATIILQYFMEQ 135 >gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy] gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy] Length = 142 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + R +P DERL+TV A+ L + R+ + Sbjct: 65 LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 124 EVDSIAACVILEQWLQQ 140 >gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens] gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens] Length = 139 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + + +P DERL+TV A+ L + R+ + Sbjct: 62 LPTCIDDRELYTTSAARRFAKQLHKQ-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 121 EVDSIAACVILEQWLQQ 137 >gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC2047] Length = 142 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I + D GT RIG+A A P P L + +L I AF++G+ Sbjct: 6 QHRILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGV 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+EGP R F + + R + P DERL+T+ A++ L + N K Sbjct: 66 PLNMDGTEGPITPRARKFANRLHGR-FHKPIYTMDERLSTIEAKEKLAEFN---NKNSIG 121 Query: 136 VDSIAAALILQEVL 149 +DS+AA LIL+ Sbjct: 122 LDSMAATLILESWF 135 >gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76] gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 137 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G++ +G+A+SD A + ++ L + + F++GLP Sbjct: 1 MGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136 NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR + + Sbjct: 61 NMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVI 119 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD S Sbjct: 120 DKLAAVMILQNYLDAHS 136 >gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Mississippi] gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Puerto Rico] gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Virginia] gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase Length = 157 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL Sbjct: 1 MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + E I A ++GLPL ++G EG R+FV +I + V DER TT A + Sbjct: 61 AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKKS-GVYVYLHDERFTTAMASR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + + RK + D I+AALILQ+VLD Sbjct: 120 TTESLGLRRKASQKVDDKISAALILQQVLD 149 >gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC 4571] gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC 4571] Length = 142 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+++SD A + + L + + F++GL Sbjct: 2 RLLGLDIGSKTVGVSVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133 P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR Sbjct: 62 PKNMDGTSGASVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120 Query: 134 QKVDSIAAALILQEVLD 150 Q +D +AA LILQ LD Sbjct: 121 QVIDQMAAVLILQNYLD 137 >gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4] gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4] Length = 146 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G K IG+A+SDP A L R + + +L + +IGLP Sbjct: 2 RILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + G GP+ F + + + ++WDER TT A+++L+ +VSRKKR + D Sbjct: 62 TLAGEIGPQAQKVLRFGELLAQQ--GLKIIYWDERFTTKEAEKVLLAADVSRKKRRRVKD 119 Query: 138 SIAAALILQEVLDRIS 153 +AA L+L+ L++ Sbjct: 120 ILAAVLLLEAYLEKRR 135 >gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 138 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTKRIG+A++DP + A+ + ++ L +++ TE + F++G P Sbjct: 2 RLMAFDYGTKRIGIAVTDPLQIVANALTTVHPNEIFDF---LKNYLQTEQVETFVVGKPR 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135 M+GS+ F+ + + +P DER T+ A ++ + + KR Sbjct: 59 QMDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGL 118 Query: 136 VDSIAAALILQEVLDRISFL 155 VD+I+A +ILQ +D SFL Sbjct: 119 VDTISATIILQSYMDSRSFL 138 >gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72] gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72] Length = 156 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L + + D G RIG+A+ + R A+P + + + + A + Sbjct: 12 LPARGTLLAFDFGLARIGVAVGELETRHANPLLTVHEEANAARFAIIARLLDEWKPVALV 71 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KK 131 +GLP +++G E R F + + R +P DERL++ +A++ L D +S + Sbjct: 72 VGLPGHLDGREHELAPRCRRFANQLHGR-FGIPVHLVDERLSSAAAERQLHDAGLSGWQA 130 Query: 132 RIQKVDSIAAALILQEVLD 150 R +D++AA LILQ LD Sbjct: 131 RKPVLDAVAAQLILQHFLD 149 >gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14] gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14] Length = 143 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + ++ + D GTK IG+AI A P L K ++ + + Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60 Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLPL++ G E + F + + R DERL+TV A+ L + R Sbjct: 61 VGLPLDLEGKELESITPRAKKFANRLHGR-FGYQVELHDERLSTVEAKAELFERGGYRSL 119 Query: 132 RIQKVDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 120 SKGNIDSQSAVVILESWFER 139 >gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae] gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli] gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae] gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes] gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli] Length = 140 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I D GTK IG+AI A P L E+ + ++GL Sbjct: 3 SRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G++ R F + + R P F DERLTT A+ L + + Sbjct: 63 PLNMDGTDQEITVRARKFGNRLHGR-FGKPVEFKDERLTTTDARARLFERGGYKALDKGS 121 Query: 136 VDSIAAALILQEVLDR 151 VD ++A LI++ ++ Sbjct: 122 VDGVSAQLIVEAWMEE 137 >gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145] gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145] Length = 135 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D GTK IG+A+ A L + + + ++GLPL Sbjct: 2 TVVGFDFGTKSIGVAVGQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERVVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P + F N I + VP VF DERLT+ +A++ L + + R KVD Sbjct: 62 NMDGTEQPLTQRAKKFG-NRIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLEKGKVD 120 Query: 138 SIAAALILQEVL 149 S AA LI+++ L Sbjct: 121 SAAALLIVEDYL 132 >gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1] gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1] Length = 160 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85 TK IG+A SDP RR A + RK T A LL+ F++GLPLNM+GSEGP Sbjct: 28 TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87 Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145 R STRAF N+ +P WDERL+T + ++ LI +VSR KR + +D AA IL Sbjct: 88 RAQSTRAFARNLAK-LTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146 Query: 146 QEVLDRISFLESSK 159 Q LDR++ L ++ Sbjct: 147 QGALDRLAALRRAE 160 >gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 144 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID G KR G+A++DP + A+ + V ++S++ E++ ++GL Sbjct: 1 MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVRQEHVERIVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K Sbjct: 58 PKQANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117 Query: 136 --VDSIAAALILQEVLDRISFLESS 158 VD I+A +ILQ ++ L+ + Sbjct: 118 ALVDEISATIILQGWMESRMMLKKN 142 >gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM 2638] gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM 2638] Length = 135 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + SID GTKR+GLAISDP + FA P + R ELL I E + +IGLPL Sbjct: 2 KVLSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +++G + R F ++ +R+V +P DERL++++A+ L + + +KR + +D Sbjct: 62 SLDGEDTLTTRQVRNFAASL-ERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 120 Query: 138 SIAAALILQEVLDR 151 S AA +IL+ L R Sbjct: 121 SQAAKIILETWLAR 134 >gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425] gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425] Length = 150 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG KRIG+A D A L R+ + +L + + ++GLP M Sbjct: 5 LGLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + + + + +P + DERLT+ A+ +L + +D Sbjct: 65 DGSIGFQARRVQRLAQRIA-QALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRK 123 Query: 140 AAALILQEVLDRISFLE 156 AAALILQ+ L++ + Sbjct: 124 AAALILQQWLEQRRLSQ 140 >gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC 29799] gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC 29799] Length = 139 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID G R G+AISDP A + +K A E+ + + ++G P Sbjct: 2 RIMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGPR RAF + + + V WDER TTV A IL K+ + VD Sbjct: 62 NMDGTEGPRAELYRAFAQQ-VGQVTGLTPVLWDERRTTVEAHNILHASGKRMKQHKKTVD 120 Query: 138 SIAAALILQEVLDRIS 153 ++AA LIL+ L R Sbjct: 121 AVAATLILEGYLTRRR 136 >gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM 12261] gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM 12261] Length = 138 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D+G KRIG+A+SDP FA F+ K + L+L + + N+ +IG Sbjct: 1 MGRILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGN 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL NG+ GP + + R ++ V WDER TT AQQ+L++ NVSRKKR +K Sbjct: 59 PLRTNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEK 118 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AAALILQ LD Sbjct: 119 VDQLAAALILQNYLDHTR 136 >gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22] gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei 87.22] Length = 154 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 62/146 (42%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G RIG+A DP A P + + V L + I+G Sbjct: 2 RRGRRLALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ G EGP R F + VP DER+TTV+A Q L V KK Sbjct: 62 LPRSLKGGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRS 121 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D AA +ILQ+ L+ + G Sbjct: 122 VIDQAAAVIILQQALESERMSGKAPG 147 >gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1] gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1] Length = 159 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 1/133 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GT RIG+AI A P L + + + F++GLP Sbjct: 22 KTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFVVGLP 81 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE R F + R P+ DERL++ A+ +I R + V Sbjct: 82 LNMDGSENEMCQRARKFAKRLHGR-YNRPYHMMDERLSSYDAKGQVIAQGGHRNFKENSV 140 Query: 137 DSIAAALILQEVL 149 D +AA LI++ Sbjct: 141 DGLAAQLIIETWF 153 >gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina ymp] gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp] Length = 144 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 3/139 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP + + D GTK+IG+A+ A L + + + I A ++ Sbjct: 4 KPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAVVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR 132 GLPLNM+G+ F + + +P DERLTT A+ Q L + S R Sbjct: 64 GLPLNMDGTPSEMSARAEKFARRL-NGHFNLPAYTHDERLTTFEAKGQRLRE-GQSGGYR 121 Query: 133 IQKVDSIAAALILQEVLDR 151 + VD+IAAAL+LQ L+ Sbjct: 122 ERPVDAIAAALLLQGWLEE 140 >gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734] gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734] Length = 155 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 59/137 (43%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +D+GT RIG+AISDP A P + + + ++ Sbjct: 12 PGRGRRLGLDVGTVRIGVAISDPDCILATPVETVQATADDADVQRVAEICRENFVVEIVV 71 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+ + G+ + F + + +P DER++T++A Q V+ KK Sbjct: 72 GLPVALRGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGR 131 Query: 134 QKVDSIAAALILQEVLD 150 +K+D AA ILQ LD Sbjct: 132 KKIDQAAAVHILQGWLD 148 >gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries] gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Florida] gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries] gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale str. Florida] Length = 164 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL Sbjct: 8 MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 67 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + E I A ++GLPL ++G EG R+FV +I + V DER TT A + Sbjct: 68 AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKKS-GVYVYLHDERFTTAMASR 126 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + + RK + D I+AALILQ+VLD Sbjct: 127 TTESLGLRRKASQKVDDKISAALILQQVLD 156 >gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina NK-01] gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina NK-01] Length = 144 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 KP + + D GTK+IG+A+ A L + + + I A ++ Sbjct: 4 KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR 132 GLPLNM+G+ F + + + +P DERLTT A+ Q L + S R Sbjct: 64 GLPLNMDGTPSEMSARAEKFARRL-NGRFNLPAYTHDERLTTFEAKGQRLRE-GQSGGYR 121 Query: 133 IQKVDSIAAALILQEVLDR 151 + VD+IAAAL+LQ L+ Sbjct: 122 ERPVDAIAAALLLQGWLEE 140 >gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum 3TCK] gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum 3TCK] Length = 142 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG+AI A+P L K ++ + ++GL Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PL++ G E + F N I + DERL+TV A+ L + R Sbjct: 64 PLDLEGGELESITPRAKKFA-NRIHGRFGCVVELHDERLSTVEAKADLFERGGYRSLSKG 122 Query: 135 KVDSIAAALILQEVLDR 151 +DS +A +IL+ +R Sbjct: 123 NIDSQSAVVILESWFER 139 >gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT 11841] gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT 11841] Length = 141 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID G KR G+A++DP + A+ + V ++S++ E++ ++G Sbjct: 1 MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVQQEHVERIVVGQ 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K Sbjct: 58 PKQANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117 Query: 136 --VDSIAAALILQEVLDRISFLE 156 VD I+A +ILQ ++ L+ Sbjct: 118 ALVDEISATIILQGWMESRMMLK 140 >gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str. F0314] gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str. F0314] Length = 153 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A D +HP + + + F++G Sbjct: 5 PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLTTVTGGSNEVKFEAVAKLVDEWQPVQFVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E +R F + R +P + DER++++ A+ +L + V +K+ Sbjct: 65 LPVHADGTEHELTRLSRKFGRRLQGR-FKLPVYWVDERMSSLYAESLLAEAQVFGRKQKA 123 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ + Sbjct: 124 VLDQVAAQAILQGFFE 139 >gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum ATCC 51196] gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum ATCC 51196] Length = 146 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G +R+G+A+SD A P LVR Q L + ++G PL M Sbjct: 1 MALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G P+ +AF + + +P WDERLTT A + L + + VD + Sbjct: 61 SGDISPQALKAQAFAA-WVREEFGLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQV 119 Query: 140 AAALILQEVL 149 AA LIL L Sbjct: 120 AAVLILDGFL 129 >gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17] gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17] Length = 140 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GT+RIG+A+ P + + T +L + ++GL Sbjct: 6 QRRVMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + R +V DERLT+ A+ ++ SR R Sbjct: 66 PLNMDDSENEMCVRARKFGKRLHGR-FHVTVEMVDERLTSYQAKGEVMAAGGSRNYRRDG 124 Query: 136 VDSIAAALILQEVLDR 151 +D AA LIL+ ++ Sbjct: 125 IDDRAAVLILETWFNQ 140 >gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3] gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3] Length = 143 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D G R G+A+SDP A P + TQ + + ++GLP Sbjct: 2 KVMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR +AF + + VP + +DER TT++AQ N KKR +D Sbjct: 62 NMNGTLGPRAEKAQAFAKAL-EAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSID 120 Query: 138 SIAAALILQEVLDRISFLESSK 159 + AA +ILQ+ LD + + K Sbjct: 121 AAAATIILQDYLDSVRNTPNGK 142 >gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby] gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella pneumophila str. Corby] Length = 142 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P D G KRIG+A+ A P + K + IT N A I+G Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP ++ E + R F + R +P DERL+TV A+ L + R+ + Sbjct: 65 LPTCIDDRELYTTSAARCFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123 Query: 135 KVDSIAAALILQEVLDR 151 +VDSIAA +IL++ L + Sbjct: 124 EVDSIAACVILEQWLQQ 140 >gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 138 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTKRIG+A++DP + A+ + ++ L +++ TE + F++G P Sbjct: 2 RLMAFDYGTKRIGIAVTDPLQIVANALTTVHPDEIVDF---LKNYLQTEQVETFVVGKPR 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135 M+GS+ F+ + + +P DER T+ A ++ + + KR Sbjct: 59 QMDGSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGL 118 Query: 136 VDSIAAALILQEVLDRISFL 155 VD+I+A +ILQ +D SFL Sbjct: 119 VDTISATIILQSYMDSRSFL 138 >gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 144 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G +RIG+A+SDP A P + R+ Q A E+ E + ++G PL+M Sbjct: 1 MAIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G F M+ + +P +DERLTTVSA++ILI+ NV R++R VD+ Sbjct: 61 SGQPSEMTSRAEKFA-RMLAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAA 119 Query: 140 AAALILQEVL 149 AA ++L++ L Sbjct: 120 AAQVLLEDYL 129 >gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4] gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4] Length = 139 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR+GLA++D A+ + +V L +I E + F+IGL Sbjct: 1 MGRILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEV---LTYLEKYIAKEPVEKFVIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P MNG + + R F + + + V+ DER T+V A + +++ + +K R Sbjct: 58 PKQMNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNK 117 Query: 134 QKVDSIAAALILQEVLDRISFL 155 + VD I+A +ILQ L+ I L Sbjct: 118 ELVDKISATIILQSYLESIYNL 139 >gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260] gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260] Length = 144 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 2/135 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++DLGT R+G+A+SDP RRFA P L ++ + + T + ++GL Sbjct: 3 EGRVLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENW--IQRVRELVVTHQVTLVLVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G+ GP V R + + VP F+DER TT AQQ L+ +VSRK R Q+ Sbjct: 61 PTRTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQR 120 Query: 136 VDSIAAALILQEVLD 150 VD +AAA++LQ LD Sbjct: 121 VDKVAAAVLLQGFLD 135 >gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12] gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12] Length = 138 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ D G KRIG+A+ A P + + + + A I+G Sbjct: 2 PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P ++G E + R F + R +P DERLTTV A+ L RK + Sbjct: 62 IPTCIDGREQYTTSAARRFAKELRKRFT-LPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120 Query: 135 KVDSIAAALILQEVL 149 +VDSIAA +IL++ L Sbjct: 121 EVDSIAACVILEQWL 135 >gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd KW20] gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae 86-028NP] gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae 22.1-21] gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittAA] gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittHH] gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittII] gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae R3021] gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittGG] gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047] gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031] gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius ATCC 11116] gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae 86-028NP] gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae 22.1-21] gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittAA] gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittHH] gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittII] gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae 22.4-21] gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittGG] gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae 10810] gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866] gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846] gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031] gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047] gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius ATCC 11116] Length = 139 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P + + + I+GLPLNM Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E R F + + R V DERLTT A+ + + + + K+D + Sbjct: 66 DGTEQDLTLRARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124 Query: 140 AAALILQEVLDRISF 154 +A LIL+ + + Sbjct: 125 SACLILESWFEYAEY 139 >gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 138 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 2/137 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I ++D+GT RIG+A+SDP FA + +L +T+ +++ ++GLP Sbjct: 3 RRIVALDMGTVRIGVAMSDPLGSFAQGVAVWDAEGDW--LSDLRDLVTSRDVSTVVVGLP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + NG++GP + A + + + V WDER T+ A ++LI+ +VSRKKR +V Sbjct: 61 IRENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQV 120 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD + Sbjct: 121 DKVAATVILQGYLDSLR 137 >gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159] gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum DSM 5159] Length = 161 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 +D+G +R+G+AISD A P + + L+ I+ + ++GLP Sbjct: 7 GRTMGLDVGGRRVGVAISDEMGMIASPLATIDLDRDG--LERLVELISRYDPVLIVVGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + M G EG + T+AF + +R + P VFWDERLT+ +A+++L D V RK+R + V Sbjct: 65 VTMRGREGSQAVETKAFAARLAER-IDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELV 123 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 D++AAAL+LQ LD G Sbjct: 124 DAVAAALLLQSYLDAQRSQRGRHG 147 >gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp. SM9913] gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp. SM9913] Length = 149 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 3/143 (2%) Query: 10 VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 K++KP + + D GTK IG+AI A + + ++ + Sbjct: 3 KKTVKPQGERTVMGFDFGTKSIGIAIGQELTGSATSLKAVKAQDGIPNWDDIAVQVKEWQ 62 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++GLPLNM+G+ + F + + + + DERLTT A+ L + Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIAVHTQDERLTTADAKARLFERGG 121 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 + VD+++A +IL+ + Sbjct: 122 YKNLGKGNVDNMSAVIILESFFE 144 >gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans Agy99] gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M] gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 170 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 62/144 (43%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ID+GT RIG+A SDP A P + R++ + L + + I+GL Sbjct: 24 RGRRLGIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGL 83 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + G + R +P DERLTTVSAQ+ L + V K + Sbjct: 84 PRTLADRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAV 143 Query: 136 VDSIAAALILQEVLDRISFLESSK 159 +D AA ILQ LD+ L + Sbjct: 144 IDQAAAVAILQAWLDQRRTLAGGR 167 >gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170] gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170] Length = 139 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP + A + Q LL ++ E + IIG Sbjct: 1 MSRILAIDYGKKRTGIAVTDPMQVIASGLTTVPTH---QLMDFLLGYVRQEAVERIIIGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + + F++ + + +P +DER T+V A Q ++ + +K R K Sbjct: 58 PKQMNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNK 117 Query: 136 --VDSIAAALILQEVLDRISFL 155 VD I+A +ILQ L+ L Sbjct: 118 ALVDEISATIILQSYLEAKRGL 139 >gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365] gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365] Length = 139 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G K IG+A SD AHP + R+ + + ++ ++GLPL + Sbjct: 5 LGLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGLPLEL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EG R R + + V WDER +T + +++LI+ ++SR+KR Q +D Sbjct: 65 SGQEGRRARRVRVLIDALRAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQVIDK 124 Query: 139 IAAALILQEVLD 150 AAA ILQ LD Sbjct: 125 QAAAYILQGWLD 136 >gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519] gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii] Length = 139 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 1/139 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G KRIG+A+SD A P L RK + E+ I E+I ++GL Sbjct: 1 MRRILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P NM+ SEG + TR F ++++ + ++ DERLT+ A+Q L M +++ K + Sbjct: 61 PKNMDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKK 120 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA ILQ LD Sbjct: 121 LIDTAAAVHILQGYLDSKK 139 >gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC 29453] gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC 29453] Length = 154 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A + AHP + + + + + IT ++G Sbjct: 11 PMGCALAFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVG 70 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E R F H + + + +P + DER +++ A+++L V KK Sbjct: 71 LPVHADGTEHEVTALARKFGHRL-NARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKA 129 Query: 135 KVDSIAAALILQEVLDR 151 +D +AA ILQ D Sbjct: 130 VLDQVAAQAILQSFFDN 146 >gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens] Length = 171 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58 M ++ ++ L + L + +D+G++ IGLA+SDP R A P + R T + Sbjct: 1 MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTV 116 L S + NI +IG PL + G +G + + F + R + +V+WDERLT+V Sbjct: 61 LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 + ++ M+++ ++R VD ++A ILQ LD +S +E+ Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162 >gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145] gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145] Length = 138 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I S D GTKRIG+A++DP + A+ + K + + L ++ TE++ F++G Sbjct: 1 MARIMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEF---LKKYLLTESVETFVVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P M+G++ RAFV+ + +P DER T+ A ++ +K R Sbjct: 58 PKQMDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDK 117 Query: 134 QKVDSIAAALILQEVLDRISF 154 VD+++A +ILQ ++++ Sbjct: 118 ALVDTVSATIILQSYMEKLGM 138 >gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae T3T1] Length = 139 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG A+ A P + + + ++GLPLNM Sbjct: 6 IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E + F + + + + + DERLTTVSA+ + R KVD I Sbjct: 66 DGTEQDLTLRAKKFANRL-NGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124 Query: 140 AAALILQEVLDRIS 153 +A LIL+ + S Sbjct: 125 SACLILESWFENYS 138 >gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus parainfluenzae ATCC 33392] gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus parainfluenzae ATCC 33392] Length = 139 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG A+ A P + + + ++GLPLNM Sbjct: 6 IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E + F + + + + + DERLTTVSA+ + R KVD I Sbjct: 66 DGTEQDLTLRAKKFANRL-NGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124 Query: 140 AAALILQEVLDRIS 153 +A LIL+ + S Sbjct: 125 SACLILESWFESYS 138 >gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 138 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D+GTKRIG+A+SDP A P ++ K + S I ++N++ +IGL Sbjct: 1 MSRILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ + G +G +V T+ F + ++ VF DER TT A++ L +K Sbjct: 59 PITLKGLQGQQVEYTKEFAEKLKHYIPHINIVFIDERFTTSLAEKHLSQT-KKKKNIKDY 117 Query: 136 VDSIAAALILQEVLDRISF 154 +DS++A ILQ LD +SF Sbjct: 118 IDSLSAVFILQTYLDSLSF 136 >gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus PCC 6301] gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 149 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G +RIG+A D +VR+ + + + +IGLP +M Sbjct: 7 LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + T+ F + + +P + DERLT+ A++++ + S + +D Sbjct: 67 DGSLGSQAKQTQRFATRLSKA-LQLPITYVDERLTSFEAEEMIKAVGRSPSRDKGAIDRK 125 Query: 140 AAALILQEVLDRIS 153 AAALILQ+ LD Sbjct: 126 AAALILQQWLDEQR 139 >gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM 44728] gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM 44728] Length = 151 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 5/145 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68 P +D+G R+G+A+SDP A P + R + + + ++ Sbjct: 5 PPRGRRLGVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSV 64 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 +IGLP+ ++G E +RA+ + VP F DERLTT A + L + V Sbjct: 65 VEIVIGLPVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSERGVK 124 Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153 K+R VD AA ILQ L++ Sbjct: 125 GKRRKAVVDQAAAVEILQLWLEKQR 149 >gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6] gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6] Length = 146 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIG 74 I +D G K +G+A+SD A + R++ T+ T + I+ ++G Sbjct: 2 RILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRI 133 LPL M+ G R F M+ ++ + + WDERLTTV+A ++L +M V + R Sbjct: 62 LPLLMSDEIGDRAQKAMEFGE-MLKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNRK 120 Query: 134 QKVDSIAAALILQEVLDRISFLE 156 +D IAA ILQE LD S E Sbjct: 121 AVIDQIAAGFILQEYLDAQSAKE 143 >gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str. F0039] gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str. F0039] Length = 137 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++D + A+ + + + L ++I E + IIGL Sbjct: 1 MSRILAIDYGQKRTGLAVTDTLQLIANGLDTIPTHTLYEF---LCAYIEKEPVERIIIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P NG + FV + VP ++DER T+V A + +ID + +K R Sbjct: 58 PRQTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDK 117 Query: 134 QKVDSIAAALILQEVLDRIS 153 VD I+A +ILQ+ L+ Sbjct: 118 ALVDKISATIILQDYLEHRR 137 >gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ] gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum HZ] Length = 166 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +L +L+P + I ID G ++IGLA+SDP A P R+ + Q EL Sbjct: 1 MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELS 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +E+ A ++G PL +G EG RAF +I + V DER TT A + Sbjct: 61 AVLRSEDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLIKKS-GVSIYLHDERYTTAMASR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + + RK+ + D I+AAL+LQ+VLD Sbjct: 120 ATREAGLRRKESQKIDDKISAALVLQQVLD 149 >gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301] gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301] Length = 164 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 1/133 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + D G +RIG+A+ + A+P + + + + I+GLP Sbjct: 30 STVLCFDFGEQRIGVAVGEHLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+++G+E + F + + + +P V DER ++V A +L + + + + + Sbjct: 90 LSLDGAETSVTQLCKKFARRL-NGRFNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148 Query: 137 DSIAAALILQEVL 149 D +AA ILQ Sbjct: 149 DQVAAQTILQSYF 161 >gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus PCC 7942] gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942] Length = 149 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G +RIG+A D +VR+ + + + +IGLP +M Sbjct: 7 LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + T+ F + + +P + DERLT+ A++++ S + +D Sbjct: 67 DGSLGSQAKQTQRFATRLSKA-LQLPITYVDERLTSFEAEEMIKAEGRSPSRDKGAIDRK 125 Query: 140 AAALILQEVLDRIS 153 AAALILQ+ LD Sbjct: 126 AAALILQQWLDEQR 139 >gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae 3655] gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae 6P18H1] gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae 3655] gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae 6P18H1] Length = 139 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P + + + I+GLPLNM Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQTLPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E R F + + R V DERLTT A+ + + + + K+D + Sbjct: 66 DGTEQDLTLRARKFANRLQGR-FGVNIHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124 Query: 140 AAALILQEVLDRISF 154 +A LIL+ + + Sbjct: 125 SACLILESWFEYAEY 139 >gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4] gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4] Length = 178 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69 ID+G+ RIG+A SDP A P + R K + + Sbjct: 16 PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAV 75 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 I+GLP + G G F + + +P DERLTTV+A + L + VS Sbjct: 76 EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 + + +D AA ILQ LD S Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159 >gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1] gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1] Length = 178 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69 ID+G+ RIG+A SDP A P + R K + + Sbjct: 16 PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAV 75 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 I+GLP + G G F + + +P DERLTTV+A + L + VS Sbjct: 76 EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 + + +D AA ILQ LD S Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159 >gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003] gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003] Length = 146 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + + A P + + E+ I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ R F + + + + +P + DER ++V A+ L K R Sbjct: 67 LPMHPDGTPHEMTQLARRFGNQL-NGRFNLPVTWVDERYSSVEAEAGLRAT----KGRAD 121 Query: 135 KVDSIAAALILQEVLDRIS 153 ++D+ AA++ILQ+ LD +S Sbjct: 122 RLDAEAASIILQQYLDGLS 140 >gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans WP3] gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans WP3] Length = 140 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + D GTK IG+AI A P + E+ + IT ++GL Sbjct: 3 SKTVLGFDYGTKSIGIAIGQQLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E + F + + + + V V DERLTT A+ L +M + + Sbjct: 63 PLNMDGTEQDITLRAKKFGNRL-NGRFGVKVVTQDERLTTADAKARLFEMGGYKALTKGQ 121 Query: 136 VDSIAAALILQEVLDR 151 VD+++A LI++ + Sbjct: 122 VDAMSAVLIIESYFEN 137 >gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein [Rhodopirellula baltica WH47] Length = 173 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I +AS+D GT RIG+AI DP A P + + A + Sbjct: 1 MPT-TITTAEDGFPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFI 59 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 +E IAA+++GLP++ +G E + +R F + +P +DER TTV+A Sbjct: 60 DLAKSERIAAWVVGLPIHCDGGESDKSKESRKFAA-WLKETTGLPTRLFDERFTTVAANA 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + +RKK Q+VD++AA ++L+ L+ + G Sbjct: 119 KIRQGKTTRKKTKQRVDAVAAQVLLESFLEACRYRGELAG 158 >gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma proteobacterium HTCC2143] gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma proteobacterium HTCC2143] Length = 153 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IGLAI A+P L K ++ I +IGLPLN Sbjct: 14 VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS + F + + R +P DERL++ A+ +I SR + VDS Sbjct: 74 MDGSFSELSRRAKKFANRLHGR-FGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132 Query: 139 IAAALILQEVL 149 +AA +IL+ L Sbjct: 133 LAAKIILESWL 143 >gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801] gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802] gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801] gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802] Length = 139 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + R +L ++ ++GLP +M Sbjct: 7 LGLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVVGLPYSM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F I + +P + DERLT+V A+ L +D Sbjct: 67 DGSLGFQAKQVQKFTRR-ISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDKGAIDRQ 125 Query: 140 AAALILQEVLDRIS 153 AA +ILQ+ LD Sbjct: 126 AATIILQQWLDSRR 139 >gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii CS-505] gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii CS-505] Length = 154 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+KR+G+A D A + RK + E+ + + ++G+P + Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSG 72 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F + + + +P DERLT+ A+Q+L+ N S VD Sbjct: 73 DGSMGEQARRIQKFANRLAKA-LGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRK 131 Query: 140 AAALILQEVLD 150 AA++ILQ+ LD Sbjct: 132 AASIILQQWLD 142 >gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea 34H] gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea 34H] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G K IG+A+ A P + L ++ ++GL Sbjct: 11 QRTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEWQPDFIVVGL 70 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GSE + F N I + + F DERLTT A++ L + + Sbjct: 71 PLNMDGSEQQLTLDAKKFG-NRIHGRFGIQVEFQDERLTTADAKEQLFARGGFKNLKKDN 129 Query: 136 VDSIAAALILQEVLDR 151 +D+ +A LI++ ++ Sbjct: 130 IDAESARLIIESYFEQ 145 >gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1] gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1] gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51] gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1] gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1] gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1] gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51] Length = 141 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G+K+IG+A+ A L + ++ I A ++GLPLN Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + +P DERLTT A+ + + R VD Sbjct: 67 MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida KT2440] gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida KT2440] Length = 141 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G+K+IG+A+ A L + ++ I A ++GLPLN Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + +P DERLTT A+ + + R VD Sbjct: 67 MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittEE] gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae 7P49H1] gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127] gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae PittEE] gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae 7P49H1] gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127] Length = 139 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P + + + I+GLPLNM Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+E R F + + R V DERLTT A+ + + + + KVD I Sbjct: 66 DGTEQNLTLLARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKKGKVDGI 124 Query: 140 AAALILQEVLD 150 +A LIL+ + Sbjct: 125 SACLILESWFE 135 >gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter sp. HTCC7211] gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter sp. HTCC7211] Length = 151 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 1/151 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 ++ IEDL K + +DLG+KRIG++I D + A P + + + EL Sbjct: 1 MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I +I ++G P+NM+G+ G S N ID+ + + WDERL+TV A + Sbjct: 61 IEEYDIKGIVVGNPINMDGTLGRSSQSVNDVSDN-IDKAIDIDVCLWDERLSTVGAFNLS 119 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++V+ KR + +D AAA ILQ +D ++ Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAIDFLN 150 >gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea ATCC 19718] gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D G +RIG+AI + R AHP + + ++ I ++GL Sbjct: 9 SGTVLAFDFGKRRIGVAIGEHELRMAHPLTTIDQSMTRPRFEKIAELIEAWQPVLLVVGL 68 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 ++ +G+E R F + + + +P DER TTV A+ +L ++ V+ KK+ Sbjct: 69 SVHADGTEHEITRLCRRFARRL-EGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRPM 127 Query: 136 VDSIAAALILQEVLD 150 +D IAA ILQ D Sbjct: 128 LDQIAAQHILQTYFD 142 >gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 169 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 57/141 (40%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +D+G+ RIG+A SDP A P + R + + L ++ Sbjct: 19 PGRGRRLGVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVV 78 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP + GP + R P DERLTTVSAQ+ L V K++ Sbjct: 79 GLPRTLADRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQR 138 Query: 134 QKVDSIAAALILQEVLDRISF 154 +D AA ILQ LD+ Sbjct: 139 AVIDQAAAVAILQSWLDQRRA 159 >gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001] gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001] Length = 146 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A + + EL I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ + F + + + + +P + DER ++V A+ L K R Sbjct: 67 LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEATLRAN----KGRAD 121 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA++ILQ+ LD +S Sbjct: 122 MLDAEAASVILQQYLDGLS 140 >gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str. Israel] gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str. Israel] Length = 157 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M IE + L N+ I +D G +++GLAISD A P +R+ + Q EL Sbjct: 1 MLCESIEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELN 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + E I A ++GLPL ++G EG RAFV +I + + DER TT A + Sbjct: 61 AILKREGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLIKKS-GIYVYLHDERYTTAMASR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + + RK+ + D I+A LILQ+VLD Sbjct: 120 ATESLGLRRKESQKVDDKISAVLILQQVLD 149 >gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M] gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M] Length = 146 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A P + + E+ I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ + F + + + + +P + DER ++V A+ K R Sbjct: 67 LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEATTRAN----KGRAD 121 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA++ILQ+ LD +S Sbjct: 122 MLDAEAASIILQQYLDGLS 140 >gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619] gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619] Length = 141 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G+K+IG+A+ A L + ++ I A ++GLPLN Sbjct: 7 LLGFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + +P DERLTT A+ + + R VD Sbjct: 67 MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56] Length = 121 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+ Sbjct: 1 MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++ Sbjct: 61 DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119 Query: 121 IL 122 L Sbjct: 120 TL 121 >gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 168 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D G KRIG+A+ + R AHP + + T+ + + I ++G P Sbjct: 10 GTVLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRP 69 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +++G+ R F + R + +ERL++ AQ+ L ++ + + + Sbjct: 70 TSLDGTPHAMTARCRRFADQLRGR-FGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHL 128 Query: 137 DSIAAALILQEVLDRI 152 D++AA LILQ D + Sbjct: 129 DAVAAQLILQSYFDSV 144 >gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis C6786] Length = 146 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+A+ + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F + + + + +P + DER ++V A+ L S Sbjct: 61 DALVVGLPLHPDGAPHEMTQQAKRFGNQL-NGRFNLPVSWVDERYSSVEARADLRARG-S 118 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 R VD+ AA +ILQ+ LD + Sbjct: 119 GADR---VDAEAARIILQQYLDELPDHHE 144 >gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 146 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ AH L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c] gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c] Length = 197 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 +D+GT RIG+++SDP A P L R +L + A ++GLP+ Sbjct: 48 LGVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGLPMT 107 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G EG R + ++ R +P DERLTT +A + + + +S + R VD Sbjct: 108 LSGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARRGLVDQ 167 Query: 139 IAAALILQEVLD 150 AA ILQ LD Sbjct: 168 EAAVQILQHALD 179 >gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila L48] gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 141 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G+K+IG+A+ A L + ++ I A ++GLPLN Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + +P DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSERAEKFARRL-NGRYNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVD 125 Query: 138 SIAAALILQEVLD 150 +IAAAL+LQ L+ Sbjct: 126 AIAAALLLQGWLE 138 >gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822] gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822] Length = 142 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G +R+G+A D A +VR +L + ++GLP M Sbjct: 7 LGLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG G + + + I + + +P + DERLT+ A++ L + +D Sbjct: 67 NGDIGSQARQVQNYATR-IGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQ 125 Query: 140 AAALILQEVLD 150 AAA+ILQ+ LD Sbjct: 126 AAAIILQQWLD 136 >gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1] gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease [Rhodopirellula baltica SH 1] Length = 173 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 1/148 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +AS+D GT RIG+AI DP A P + A + +E IAA++ Sbjct: 12 FPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAKSERIAAWV 71 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP++ +G E + +R F + +P +DER TTV+A + +RKK Sbjct: 72 VGLPIHCDGGESDKSKESRKFAA-WLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKT 130 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 Q+VD++AA ++L+ L+ + G Sbjct: 131 KQRVDAVAAQVLLESFLEACRYRGELAG 158 >gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3] gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3] Length = 202 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 2/141 (1%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFI 72 +P I +D+G+ R+G+A SDPG A P L R ++ +L+ + + Sbjct: 22 RPGVRI-GVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVV 80 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP M+G EG V R + + +R VP F DERLTTV+A + + + V + R Sbjct: 81 VGLPRQMSGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRAR 140 Query: 133 IQKVDSIAAALILQEVLDRIS 153 VD AA ILQ LD Sbjct: 141 RSLVDQEAAVQILQHDLDSRR 161 >gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2] gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2] Length = 140 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76 I ID G RIG+A+SDP A + K + + ++ + I+G P Sbjct: 2 RIIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGFP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR T F+ + R + + WDERL+TVSA + + ++ V + K+ V Sbjct: 62 KNMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHVV 121 Query: 137 DSIAAALILQEVLDRIS 153 D IAA ILQ LD + Sbjct: 122 DQIAAVYILQGYLDSTA 138 >gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 146 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + IT A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSEMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836] Length = 141 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++D GTKR G+A+SD + A+ + + L +++ E++ I+GL Sbjct: 1 MGRYLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTL---LDYLKTYLQKEDVERIIVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + R FV + + ++DER T+ A + ++D + + R K Sbjct: 58 PKQMNNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD I+A +ILQ ++ + Sbjct: 118 SLVDEISATIILQGYMESLR 137 >gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7] gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19] gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3] gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19] gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3] Length = 140 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GL Sbjct: 1 MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P MN + AFV ++ +P ++DER T+V A + +++ + +KKR Sbjct: 58 PKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117 Query: 134 QKVDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ + Sbjct: 118 GLVDEISAVIILQAYLESKKY 138 >gi|260767462|ref|ZP_05876399.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972] gi|260617574|gb|EEX42756.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972] Length = 141 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P E+ I +IGL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKALESITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD +A +IL+ +R+ Sbjct: 121 NVDCQSAVIILESWFERL 138 >gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM 3043] gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM 3043] Length = 148 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D GT+RIG+A+ + A L + ++ + + ++GLPLN Sbjct: 9 VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E R F + + R P +DER +T +A++I D R VD Sbjct: 69 MDGTESDMSRRARKFGNRLHGR-FGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127 Query: 139 IAAALILQEVLDRISFLES 157 IAA LIL+ +FL+ Sbjct: 128 IAAQLILESFFADDTFLQR 146 >gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712] gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712] Length = 141 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 77/143 (53%), Gaps = 5/143 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR+GLA+SDP A ++ +++ + L ++++ E + F++G Sbjct: 1 MGRILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRF---LEAYLSHEKVDLFVVGH 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P M+ S+ + + F+ + R ++P V +DER T+V A + L++ +K R Sbjct: 58 PKQMDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDK 117 Query: 134 QKVDSIAAALILQEVLDRISFLE 156 +D+++A +IL +++ L+ Sbjct: 118 ALIDTMSATIILTSYMEQQRNLK 140 >gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato str. DC3000] gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato T1] gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato Max13] gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato K40] gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv. tomato T1] gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 146 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSEMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36] gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36] Length = 148 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D GTK IG+A+ A P + I I+G Sbjct: 8 QRTLLGFDFGTKSIGIAVGQEITGTARPLVAFKANDGIPDWDLIEKQIKEWQPDLVIVGK 67 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E F + + R V DERLTT A+ L + + + Sbjct: 68 PLNMDGTEQEITKRATKFANRLTGR-FNVKTEMHDERLTTKDAKARLFEEGGFKALQKGA 126 Query: 136 VDSIAAALILQEVLD 150 +DS +A +IL+ ++ Sbjct: 127 IDSASAMVILESWME 141 >gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 154 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + D G RIG+A AHP + + + + I ++G Sbjct: 9 PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+E R F + R +P + DERLT++ A+ +L + V +K+ Sbjct: 69 LPVHSDGTEHELTRLARKFGRRLHGR-FGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127 Query: 135 KVDSIAAALILQEVL 149 DS+AA ILQ Sbjct: 128 VSDSVAAQAILQGFF 142 >gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1] Length = 142 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIG 74 +D+G R+G+A+ DP A P + R + + + ++ ++G Sbjct: 5 RGRRLGVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVVLG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP N+ G +GP + R F + + VP DER+TTV A + L V +K+ Sbjct: 65 LPRNLRGEDGPAARAAREFADAL-QAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQRS 123 Query: 135 KVDSIAAALILQEVLDRIS 153 VD AA ILQ LD+ Sbjct: 124 VVDQAAAVQILQGWLDQHR 142 >gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC BAA-835] gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC BAA-835] Length = 141 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G RIG+A +DP AHP + R + ++ + I ++GLP+ M Sbjct: 8 LGIDYGEARIGIAATDPVGIMAHPVETIHRHQTDG-ISRIVQLVQERGIRTLVLGLPVRM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G+EG RAF + +P +F DE LTTV AQ+ L K +D + Sbjct: 67 DGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNFRPIIDQV 126 Query: 140 AAALILQEVLDR 151 AA IL LD Sbjct: 127 AAVEILNTWLDS 138 >gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a] gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction resolvase [Frankia alni ACN14a] Length = 205 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPLN 78 +D+G+ R+G+A SDPG A P L R K +L+ + ++GLP Sbjct: 32 IGVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVVGLPRQ 91 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G EG V R +V + +R VP F DERLTTV+A + + + V + R VD Sbjct: 92 MSGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQ 151 Query: 139 IAAALILQEVLDR 151 AA ILQ LD Sbjct: 152 EAAVQILQHDLDS 164 >gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC 6506] gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC 6506] Length = 170 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + R + + +T + + GLP NM Sbjct: 10 LGLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQVLVSGLPYNM 69 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+ G + + + + +P + DERLT++ A+Q+++ +S + +D Sbjct: 70 NGTLGFQARQVQKYASRLASALA-LPLEYVDERLTSIQAEQLMLTEKISPSRNKALIDRK 128 Query: 140 AAALILQEVLDRISFLESS 158 AAA+ILQ+ LD + Sbjct: 129 AAAIILQQWLDERREMGRW 147 >gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis EO147] Length = 146 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+A+ + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F + M + + +P + DER ++V A+ L S Sbjct: 61 DALVVGLPLHPDGAPHEMTQQAKRFGNQM-NGRFNLPVSWVDERYSSVEARADLRARG-S 118 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 R VD+ AA +ILQ+ LD + Sbjct: 119 GADR---VDAEAARIILQQYLDELPDHHE 144 >gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC3088] gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC3088] Length = 139 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D G ++IG+A+ + + A P L + +L + + A ++G Sbjct: 1 MSRVLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGE 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NM+G++ R F N I + V DERL++ A+Q +M + Sbjct: 61 PSNMDGTDSDMAARARKFA-NRIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTP 119 Query: 136 VDSIAAALILQEVLD 150 +D++AA +ILQ + Sbjct: 120 IDALAAMIILQSYFE 134 >gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109] gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109] Length = 144 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG+KRIG+A+SD A + R + +L + + +IGLP Sbjct: 2 RILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +++G G A + +++P WDERLTT+ A+++L+ ++SR+KR Q +D Sbjct: 62 HLDGRLGEGAEEALA-WAAELREHLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVID 120 Query: 138 SIAAALILQEVLDRISFLESSK 159 +AA LILQ LD ++ K Sbjct: 121 KLAAGLILQAFLDNRRQTQAEK 142 >gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str. Hartford] gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str. Hartford] Length = 154 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 1/155 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I ++ + L N P+ +ID G+K++G+A+S+ R A P + LL Sbjct: 1 MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 S + + +IG+P++M+G+ + + F + +P DERLTT +A Sbjct: 61 SIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEFTK-SINLPIYLQDERLTTKAANN 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 L + RK R D++AA++IL+ VLD + + Sbjct: 120 FLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI 154 >gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069] gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069] Length = 145 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + +L Q D G KR+G+A + + L + + I N+ Sbjct: 1 MTTLTTAQRYLCFDFGEKRLGVATGVRTQMSSQALTVLAVTNDQPDWKLIENLIREWNVE 60 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 AF++GLPLNM+ SE R F + + R +P DERL++ + L ++ + Sbjct: 61 AFVVGLPLNMDDSEQELTQKARKFANRLHGR-FGLPTHLHDERLSSAEVKDYLYEIGGYK 119 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 K + +D+ AA LIL+ ++ Sbjct: 120 KLKQNPIDAYAAELILKSFFEQ 141 >gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 143 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P + + I+GL Sbjct: 6 QRTVLAFDFGTKSIGVAVGQEVTGTASPLDAINAVDGIPNWDIVAKVFEQWQPDLAIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GS + + F + + + K VP DERLTTV A+ L +M +K +K Sbjct: 66 PLNMDGSFQQVTFAAKKFANRL-NAKYRVPIETVDERLTTVDAKARLFEMGGFKKLDKRK 124 Query: 136 VDSIAAALILQEVLDR 151 +DS +A LI + +++ Sbjct: 125 IDSASACLIFESWVEQ 140 >gi|315181242|gb|ADT88156.1| Holliday junction resolvase-like protein [Vibrio furnissii NCTC 11218] Length = 141 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P E+ I +IGL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKALETITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD +A +IL+ +R+ Sbjct: 121 NVDCQSAVIILESWFERL 138 >gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4] gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4] gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 177 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 4/144 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69 +ID+G+ RIG+A SDP A P + R K +++ ++ Sbjct: 16 PGRGRRIAIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAV 75 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 I+GLP + G +G AF + +P DERLTTV+A + L + V Sbjct: 76 EVIVGLPQTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKA 135 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 + + +D AA ILQ LD S Sbjct: 136 RGQRPMIDQAAAVEILQGWLDERS 159 >gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205] gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205] Length = 137 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR GLA++DP + A+ + + + ++I E + +IG P+ Sbjct: 2 RILSIDYGKKRTGLAVTDPLQIIANGLATV---STHELFTYIETYIQKEQVERIVIGKPM 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ--- 134 NG + F + +P ++DER T+V A + +ID V +K R + Sbjct: 59 QPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKENKG 118 Query: 135 KVDSIAAALILQEVL 149 VD I+A +ILQ+ L Sbjct: 119 LVDEISATIILQDYL 133 >gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. syringae 642] Length = 146 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis CGDNIH1] gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis CGDNIH1] Length = 168 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS+ + DL L NQ + ID G++ IG+A+SD A P + R K+ A E+ Sbjct: 3 MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + E IIGLPL+M+GS GP + R + + D +P WDER T+ Q Sbjct: 63 AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWAIALSDA-TGLPAALWDERETSSRVHQ 121 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +LI ++ RK+R VD +AAA++LQ LD + Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALDALP 155 >gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 146 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + IT A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis str. MC2 155] gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 170 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 3/141 (2%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT---ALELLSFITTENIAA 70 ID+GT RIG+A SDP A P + R K +T L + + Sbjct: 16 PGRGRRIGIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVE 75 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+GLP + H + R P DERLTTVSAQ+ L + V + Sbjct: 76 VIVGLPRTLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRAR 135 Query: 131 KRIQKVDSIAAALILQEVLDR 151 + +D +AA ILQ LD+ Sbjct: 136 GQKAVIDQVAAVGILQGWLDQ 156 >gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 146 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRNNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae T7901] gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 146 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + + I + D GT+ IG+A+ + A P L K +L + ++ Sbjct: 5 RSEETILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+NM+GSE R F + + + + F+DERLTT +A++ R Sbjct: 65 GLPVNMDGSEMEMTRRARKFGNRL-NGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRA 123 Query: 134 QKVDSIAAALILQEVL 149 + VDSIAA LIL+ + Sbjct: 124 KPVDSIAARLILEGWM 139 >gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724] gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724] Length = 141 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID G K IGLAISDP R A K L I N++ ++G P+ Sbjct: 2 RVLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++ G E + +V I V +P F DER TT+ A+++L++ ++ R+ R + Sbjct: 62 SLRGHENEKTKKIE-YVAERIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLKN 120 Query: 138 SIAAALILQEVLDRIS 153 AA +ILQ+ LD +S Sbjct: 121 KQAAVIILQKYLDSLS 136 >gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c] gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c] Length = 143 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D GTK IG+A+ A P + + ++GL Sbjct: 6 QRTVLAFDFGTKSIGVAVGQEVTGTASPLDAIKAVDGIPNWDVVAKVFEQWQPDLALVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+ + + F + + K VP DERLTTV A+ L +M +K QK Sbjct: 66 PLNMDGTFQQVTFAAKKFGNRL-SAKYRVPVETVDERLTTVDAKARLFEMGGFKKLDKQK 124 Query: 136 VDSIAAALILQEVLDR 151 +DS +A LI + +++ Sbjct: 125 IDSASACLIFESWVEQ 140 >gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185] gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185] Length = 170 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPLN 78 +D+GT R+G+A+SDP A P L R + + ++GLPLN Sbjct: 7 LGVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M G + + RA+ + + + + + DERLT+VSA Q L V+ ++ Q VD Sbjct: 67 MKGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQ 126 Query: 139 IAAALILQEVLD 150 AA LILQ L+ Sbjct: 127 QAAVLILQAALE 138 >gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 139 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I SID G KR GLA++DP + A+ + + L ++ E + I+G Sbjct: 1 MGRILSIDYGKKRTGLAVTDPMQIIANGLTTVSTVDL---WDFLQNYCKKEGVERIIMGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P NG + F + +P ++DER T+V A + +ID V +K R Sbjct: 58 PTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRREN 117 Query: 133 IQKVDSIAAALILQEVLDRISF 154 VD ++A +IL++ + + Sbjct: 118 KGLVDEVSATIILEDWMSSHRY 139 >gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum STM815] gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815] Length = 151 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A P L + + I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ R + F + + + + +P + DER ++V A+ + S ++ Sbjct: 67 LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWIDERYSSVEAEAGIR----SGTRQAG 121 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA +ILQ+ LD +S Sbjct: 122 MLDAEAACIILQQYLDGLS 140 >gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. syringae B728a] gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. syringae FF5] gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv. syringae B728a] gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. mori str. 301020] gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit 7] gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 146 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAAALILQEVLDRISFL 155 +IAAAL+LQ LD L Sbjct: 126 AIAAALLLQGWLDEHPEL 143 >gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase Length = 150 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 8/149 (5%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFI----- 63 +++ I ID G RIGLA SD + A P + KK QT ++LL I Sbjct: 1 MENKPKPSRILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCE 60 Query: 64 -TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I +IGLPL M+G G + F ++ + +P WDERLTTV A++ L Sbjct: 61 TQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSL 119 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDR 151 + ++RKKR + VD ++A++ILQ LD Sbjct: 120 RESQLTRKKRSKVVDIVSASIILQSYLDS 148 >gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 138 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I S+D G KR G+A++DP + + + + LL +I E + ++G Sbjct: 1 MARILSVDYGKKRTGIAVTDPLQIICNGLVTVSSSTLVDF---LLDYIQKEEVELIVVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P NG + + FV +P V++DER T+V A + +ID + +K R Sbjct: 58 PKQTNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDK 117 Query: 134 QKVDSIAAALILQEVLDRIS 153 VD I+A +ILQ L+ Sbjct: 118 ALVDEISATIILQSYLESKR 137 >gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149] gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149] Length = 153 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL------ELLSFITTENIAAFII 73 +D+G R+G+A SDP A P L R T EL++ I ++ Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+N+ G GP + +A+ + D VP DER++TV A + L + V K+R Sbjct: 70 GLPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRR 129 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 AVVDQAAAVEILQSWLD 146 >gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus elongatus BP-1] gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1] Length = 151 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +DLG KRIG+A D + A + R+ +L + I+GLP Sbjct: 3 SVLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPY 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G G + + I + +P + DERLT+ A++IL S + VD Sbjct: 63 TLDGQLGSQARQVQHLAEK-IGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVD 121 Query: 138 SIAAALILQEVLDRIS 153 IAAALILQ+ LD S Sbjct: 122 QIAAALILQQWLDARS 137 >gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM 12885] gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM 12885] Length = 326 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG++ IG+AISDP A P L R+ + A ++ + ++G P Sbjct: 2 RWLGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++G+ GP + F + R+ VP WDERL+TV A+++LI ++SR++R Q + Sbjct: 62 RLDGTRGPEAEAAERFADAL--REAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQII 119 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 D +AA +ILQ L G Sbjct: 120 DRMAATVILQAFLQSQRRQRDGGG 143 >gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum ATCC 12472] gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 137 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D G +RIG+A+ D HP + + + I ++GLP++ Sbjct: 1 MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHP 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138 +G E +R F + + R +P DER T+V A+Q+L + V + +K+ +D Sbjct: 61 DGEEHELSALSRRFANRLKGR-FGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQ 119 Query: 139 IAAALILQEVLDR 151 +AA IL ++ Sbjct: 120 VAAQAILAGWFEQ 132 >gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi str. Boryong] gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong] Length = 157 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I I + +++ + I ID G K++G+AIS+ A P ++ + ++ Sbjct: 1 MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDR-VNKIQ 59 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 NI A +IGLP ++G+E + H + F + + ++ + +P DERLT+ +A Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 +L N+ RK R D +AA++IL+ L R+ +S Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRMQNSKS 155 >gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 155 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTEN------IA 69 + I S+D G RIG+AISD + A + KKV +T +L+ I I Sbjct: 7 KRIVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIE 66 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++GLPL M+G +G + FV + +P V WDERLTTV A++ L + + +R Sbjct: 67 EIVVGLPLLMSGKKGFQADEVLHFVE-LFKAATPIPIVTWDERLTTVQAERALREGSFNR 125 Query: 130 KKRIQKVDSIAAALILQEVLD 150 KKR + +D++AA LILQ LD Sbjct: 126 KKRSKVIDAVAAVLILQNYLD 146 >gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13] Length = 140 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R GLA D A P + + ++G P N Sbjct: 3 ILAVDFGDARTGLACCDRSELLASPAGVISETDFEVCIQKTAEAAREHRAEQIVVGYPKN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R F + + V WDER TTVSA + L N KKR VD+ Sbjct: 63 MNGTIGERAEKCALFAEKL-RTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKRKAVVDA 121 Query: 139 IAAALILQEVL 149 +AA +IL+ L Sbjct: 122 VAATIILESYL 132 >gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium genitalium ATCC 33030] gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium genitalium ATCC 33030] Length = 167 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 6/141 (4%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69 P + I ID+GT RIG+A SD A P + R + LL I+ + Sbjct: 15 PGRRI-GIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDAV 73 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 ++GLP ++ G+ V + + R VP F DERLTTV A L V+ Sbjct: 74 EVVVGLPRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVNA 133 Query: 130 KKRIQKVDSIAAALILQEVLD 150 + +D AA ILQ LD Sbjct: 134 RDGRAVIDQAAAVAILQSWLD 154 >gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33 E1] gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33 E1] Length = 141 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ++DLGT RIG+A++DP FA +L + ++GL Sbjct: 1 MKRIIALDLGTVRIGVAVTDPLGTFAQGVECWDAASGW--MGKLGELMAQYGTDRLLLGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G+EG R + R V FWDER T+ AQ +I+ ++SR+KR K Sbjct: 59 PRKEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGK 118 Query: 136 VDSIAAALILQEVLD 150 VD IAA+LILQ +D Sbjct: 119 VDQIAASLILQNFID 133 >gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212] gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212] Length = 161 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I + D G KR+G+AI + AHP + + + + + I T F++G+ Sbjct: 20 EGSILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGM 79 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+ +G ++ F + R +P V DER T+ A IL + V +++ Sbjct: 80 PLHSDGIVHELTQLSQRFARRLAGR-FNIPVVMQDERYTSQIASTILREAGVVGREQKSV 138 Query: 136 VDSIAAALILQEVLDR 151 +D IAA ILQ D Sbjct: 139 LDQIAAQQILQSFFDE 154 >gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 142 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++DLG RIG+A+SDP R FA P L ++ L++ + ++ ++GL Sbjct: 5 MGRVMALDLGEVRIGVALSDPSRSFASPLEVLKMEEGWP--LKVKELVERNSVTLIVVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ +GS GP V ++ + V V DER TT AQ+ L++ +V R+KR K Sbjct: 63 PIRTDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRKGK 122 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AAAL+LQ+ L+ Sbjct: 123 VDKVAAALMLQDYLNSRR 140 >gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002] gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002] Length = 146 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A P + + L I A ++G Sbjct: 7 REATLLAFDYGVKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ R + F + + + + +P + DER ++V A+ + N R Sbjct: 67 LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA++ILQ+ LD +S Sbjct: 122 MLDAEAASIILQQYLDELS 140 >gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein [Streptosporangium roseum DSM 43021] gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein [Streptosporangium roseum DSM 43021] Length = 163 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 2/141 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+ RIG+A SDP A P + R + L + ++GLP ++ Sbjct: 9 LGVDVGSVRIGVARSDPSGLLATPVETVRRGRG--DLDRLAEIAAEYEVVEIVVGLPTSL 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG + R F + R +P +DERLTTV+AQQ L V K + VD Sbjct: 67 SGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVVDQA 126 Query: 140 AAALILQEVLDRISFLESSKG 160 AA ++LQ LD G Sbjct: 127 AAIVLLQAALDAERATGRPPG 147 >gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria bacterium BBFL7] gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria bacterium BBFL7] Length = 139 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP + A + +++ L ++ TE++ +IG Sbjct: 1 MSRILAIDYGKKRTGIAVTDPMQIIASGLTTVATHELSVF---LEKYLNTEDVETIVIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P M+ ++ AF + ++ + DER T+ A Q +ID +S+ KR K Sbjct: 58 PKQMDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD IAA +ILQ +DR S Sbjct: 118 ALVDEIAATIILQTYMDRKS 137 >gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1] gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1] Length = 145 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G KRIG+A+SDP A P F++ + ++ I I+ +IGL Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PL + G EG + T+ FV N+ + + +F DER T+ A++ L+ +K + + Sbjct: 59 PLTLKGEEGEQARYTKEFVENLKNHIPQDIEIIFVDERFTSSLAEKTLLQ--TKKKNKKE 116 Query: 135 KVDSIAAALILQEVLDRISF 154 K+DS++A ILQ LDR+SF Sbjct: 117 KIDSLSAVFILQTYLDRLSF 136 >gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC 7335] gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC 7335] Length = 144 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG KRIG+A D A L + + L + I ++ ++GLP M Sbjct: 5 LGLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTM 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G G + + F H + + + +P F DERLT+ A+Q+L+ S + +D Sbjct: 65 DGQIGFQAKKIQKFAHRL-SKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRK 123 Query: 140 AAALILQEVLDRIS 153 AAA+ILQ+ LD Sbjct: 124 AAAIILQQWLDERR 137 >gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] Length = 140 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G R+G+A+SDP R A P L ++V A S + + G PL Sbjct: 2 RVLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G EGP+ + DR +P DERL++ A++IL +S K KVD Sbjct: 62 TLSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKVD 120 Query: 138 SIAAALILQEVLDR 151 +AA+L LQ LDR Sbjct: 121 MVAASLFLQAWLDR 134 >gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581] gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581] Length = 143 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + + I D GT+RIG+A+ + R A L + + + F+ Sbjct: 1 MSSQRLILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+G+E R F + R +P DER +T A+ I D R Sbjct: 61 VGLPLNMDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYR 119 Query: 133 IQKVDSIAAALILQEVL 149 VD +AA LIL+ L Sbjct: 120 DDGVDGLAAVLILEGWL 136 >gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS] gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS] gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS] gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS] Length = 169 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 1/148 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72 ID+G+ R+G+A SDP A P + R+K + L +T + Sbjct: 17 PGRGRRIGIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP + GP H + R VP DERLTTVSAQ+ L + V K + Sbjct: 77 VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 +D +AA ILQ LD+ ++ G Sbjct: 137 RAMIDQVAAVGILQSWLDQRRAALAAPG 164 >gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl 5] gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus PAl 5] gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl 5] gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus PAl 5] Length = 154 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + + + L +Q + +D G K IGLA+SD A P L R K++ A E+ Sbjct: 1 MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIR 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 E + + GLPL+M+GS GP + R ++ ++ ++ V +P WDERL++ + + Sbjct: 61 RIAAREGVGGLVSGLPLSMDGSFGPAAQAARDWMISLSEQ-VGLPAAMWDERLSSSAVNR 119 Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150 +LI D +++R++R + VD +AA+ +LQ LD Sbjct: 120 MLIQDADMTRQRRAELVDKLAASYMLQGALD 150 >gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999] Length = 137 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D GTK IG+A+ A P + + A ++GL Sbjct: 1 MSTYLAFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+G+E R F I + DERLTT A+ L ++ +K K Sbjct: 61 PLNMDGTEQEMTLRARKFGRR-ISARCKSQVFEVDERLTTTDAKARLFELGGYKKLSKDK 119 Query: 136 VDSIAAALILQEVLDR 151 VDS++A +I + + Sbjct: 120 VDSVSACVIFEAWCES 135 >gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM 12042] gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM 12042] Length = 139 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73 + I +DLG++ +G+A+SDP A + F++ Sbjct: 1 MERIMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKELGAVKFVL 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +MNG G R + F + + +P + DERLTT +A++ILI +VSRKKR Sbjct: 61 GLPKHMNGDVGIRGQISLDFKAKL-EAACGLPVILQDERLTTAAAERILISADVSRKKRK 119 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D +AA ILQ LD+ Sbjct: 120 AVIDQMAAVQILQSYLDQKR 139 >gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107] gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus Ueda107] Length = 143 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + + D GTK IG+A R A P L + E+ + + T ++GLP Sbjct: 3 KTLLAFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+GSE R F N + V DERL++ A+ +++ SR R V Sbjct: 63 LNMDGSESELSARARKFA-NRTQGRFGVKVEMVDERLSSFEAKGEVMERGGSRDYRHNPV 121 Query: 137 DSIAAALILQEVLDR 151 DSIAA LIL+ L+R Sbjct: 122 DSIAARLILEAWLER 136 >gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina MBIC11017] gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina MBIC11017] Length = 144 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 3/145 (2%) Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 Q I +DLG +RIG+A D A + R T+ L + + ++ Sbjct: 1 MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVV 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP M G G + T+ + + +P F DERLT+ A+ ++ + ++ ++ Sbjct: 61 GLPYTMKGEVGTQAQKTQKLAKRIAKA-LDLPLDFIDERLTSHEAESMMREQRINPAEQK 119 Query: 134 QKVDSIAAALILQEVLDRISFLESS 158 +D AAALILQ LD+ +L S+ Sbjct: 120 GMIDRKAAALILQRWLDQKPWLSST 144 >gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707] gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani AFC27] gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707] gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani AFC27] Length = 152 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%) Query: 14 KPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 P++P + D G + IG+A+ A+P L + ++ I N Sbjct: 9 SPSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLL 68 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 I+GLPLNM+ SE + R F H + R + + DERL+TV A++ L + S Sbjct: 69 IVGLPLNMDQSEQFLTKAARRFGHRLHGR-YGLAVEWVDERLSTVEARERLN-IKSSASG 126 Query: 132 RIQKVDSIAAALILQEVL 149 R Q +D +AA ILQ L Sbjct: 127 RRQGIDQMAAQCILQTWL 144 >gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_5R] gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] Length = 139 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+G RIG+A SD A P + R+K+ ++ EN + ++G+P Sbjct: 3 KKYLALDVGDVRIGVAKSDIMGIIASPLETIDRRKMKP-VKRIIELCEQENTKSIVVGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135 +++GSE + R F+H + V DER TTV+A QIL +MN ++ + Sbjct: 62 KSLDGSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMNRKGALEKRKV 121 Query: 136 VDSIAAALILQEVLD 150 VD +AA+LILQ+ L+ Sbjct: 122 VDKVAASLILQQYLN 136 >gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp. D12] gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D12] gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D12] Length = 139 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 2/135 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+G RIG+A SDP A P + R+K + ++ EN + ++G+P Sbjct: 3 KKYLALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135 +++GSE + R F+H + V + DER TTV+A +IL +MN ++ + Sbjct: 62 KSLDGSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMNRKGALEKRKV 121 Query: 136 VDSIAAALILQEVLD 150 VD +AA+LILQ+ L+ Sbjct: 122 VDKVAASLILQQYLN 136 >gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649] gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649] Length = 161 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLPL 77 D+GT R+G+A+SDP A P L R + E+++ I+GLP Sbjct: 2 DVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +++G EGP + R + + R V DERLT+VSA + L D V+ +++ VD Sbjct: 62 SLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVVD 121 Query: 138 SIAAALILQEVLDR 151 AA LILQ LD Sbjct: 122 QAAAVLILQAALDE 135 >gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP 69.14] gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP 69.14] Length = 141 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P E+ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R +P DERL+T A+ L + Sbjct: 62 PTDLHGKDLDTITPRAKKFANRLHGR-FGLPVELHDERLSTAEARSELFAHGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDR 151 +D +A +IL+ +R Sbjct: 121 NIDCQSAVVILESWFER 137 >gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 138 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID GTKR+GLA++DP + A + K V Q L + E I F++G+P Sbjct: 3 RIVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQF---LKDYHEQEGIELFVVGMPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 ++G+E AF++ + DER T+ A +I ++K R +K Sbjct: 60 RLDGTESHATKHVEAFLNLLKKNFPDTDIETHDERFTSKIALNAMIAGGTTKKYRREKGN 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D ++A +ILQ L+++ Sbjct: 120 IDKVSAVVILQSYLEKMQ 137 >gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans 2CP-C] Length = 137 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG RIGLA++D R A +VR+ + + + ++GLPL Sbjct: 2 RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGP R F + + + VP +DERL++ A+ L VS + + +VD Sbjct: 62 NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQVD 120 Query: 138 SIAAALILQEVLDRIS 153 + AAA+ILQ LDR + Sbjct: 121 AEAAAVILQGWLDRRA 136 >gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str. F0108] gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str. F0108] Length = 138 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I S+D G KR G+A++DP + + + + LL + E + ++G Sbjct: 1 MARILSVDYGQKRTGIAVTDPLQIICNGLVTVSSSTLVDF---LLDYTKREEVELIVVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P NG + R FV +P V++DER T+V A + +ID + +K R Sbjct: 58 PKQTNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDK 117 Query: 134 QKVDSIAAALILQEVLDRIS 153 VD I+A +ILQ L+ Sbjct: 118 ALVDEISATIILQSYLESKR 137 >gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4] gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4] Length = 151 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 5/145 (3%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTE 66 + + +D+GT RIG+A DP A P + L I Sbjct: 3 AAWTRGRR-LGLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEY 61 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 + ++GLP ++ G E R+F + VP DERLTTV+A L Sbjct: 62 DAVGVVVGLPTSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAG 121 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 + +K+ +D AA ++LQ +D Sbjct: 122 RNTRKQRDVIDQAAAVVLLQAWIDS 146 >gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM 15436] gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM 15436] Length = 155 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 65/131 (49%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G RIG+A++DP + + P L ELL+ I + +IG+P+++ Sbjct: 8 IGVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHL 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG EG R F + + + DERLTT A L +M V + R K+D + Sbjct: 68 NGKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQL 127 Query: 140 AAALILQEVLD 150 AA++IL+ ++ Sbjct: 128 AASIILENAIE 138 >gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis Bay] gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis Bay] Length = 163 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N + ID G KR+GLA++D G R A PRP L R E+ E + A ++GL Sbjct: 28 NVRLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGL 87 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ M+G E R + + + DERLT+ AQ L + VS KK K Sbjct: 88 PIAMDGEETDLSRQVRNLARKITSK-TGLKVHLMDERLTSAEAQARLREAGVSSKKMKGK 146 Query: 136 VDSIAAALILQEVLDR 151 +DS AA LIL+ L R Sbjct: 147 LDSGAAVLILEAYLGR 162 >gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp. D11] gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D11] gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D11] Length = 147 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++A + + ++G+ Sbjct: 1 MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL ++N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159 VD +AA++ILQ LD ++ FLE K Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146 >gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160] gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160] Length = 146 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A P + + L I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ R + F + + + + +P + DER ++V A+ + N R Sbjct: 67 LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121 Query: 135 KVDSIAAALILQEVLDRI 152 +D+ AA++ILQ+ LD + Sbjct: 122 MLDAEAASIILQQYLDGL 139 >gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614] gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614] Length = 156 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTEN--IAAFIIGLP 76 ID G RIG+A SDP A P + R K +L+ E + ++GLP Sbjct: 7 IGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLP 66 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +++G EGP R F + R VP DER+TTVSA+ +L D + KR V Sbjct: 67 RSLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVV 126 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 D AA LILQ LD ++ G Sbjct: 127 DQAAAVLILQHALDTERATGAAPG 150 >gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi str. Ikeda] gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str. Ikeda] Length = 157 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I I + +++ + I ID G K++G+AIS+ A P + + ++ Sbjct: 1 MIINSIIEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTIFATNQDR-INKIQ 59 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 NI A +IGLP ++G+E + H + F + + ++ + +P DERLT+ +A Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 +L N+ RK R D +AA++IL+ L R+ +S Sbjct: 119 LLKMGNIKRKVRNAIDDRVAASIILEGTLKRMQNSKS 155 >gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] Length = 147 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++ + + ++G+ Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL ++N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159 VD +AA++ILQ LD ++ FLE K Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146 >gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae HRC/581] gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae] Length = 141 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFII 73 + I ++DLGTK G AI+DP A + Q L++ I ++ Sbjct: 4 KKRILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGKIVL 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G PL MNG++ P + +++ + +P V DERL+T A ILI NVSRKKR Sbjct: 64 GYPLYMNGNKAPHTLLVEK-MSSILKQNFQIPVVLQDERLSTSQAHDILILANVSRKKRK 122 Query: 134 QKVDSIAAALILQEVL 149 + +D +AA +IL+ L Sbjct: 123 KVIDKLAAQIILERYL 138 >gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK] gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1] gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK] gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1] Length = 175 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 1/142 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72 ID+G+ RIG+A+SDP A P + R + + L + + + Sbjct: 23 PGRGRRLGIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVV 82 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP + G + R VP DER TTV+AQ+ L + V + + Sbjct: 83 IGLPRTLGNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQ 142 Query: 133 IQKVDSIAAALILQEVLDRISF 154 +D AA ILQ LD+ Sbjct: 143 KSMIDQAAAVGILQNWLDQRRA 164 >gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP 101886] gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP 101886] Length = 143 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 2/136 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D GTK IG+AI A P L K + + + + ++GLP Sbjct: 5 QTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVVVGLP 64 Query: 77 LNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 L+++G E R F + + R V DERLTT A+ L + + + Sbjct: 65 LDLHGGELETITPRARKFANRLKGR-FGVNVELHDERLTTTEARASLFEYGGYKALGKGE 123 Query: 136 VDSIAAALILQEVLDR 151 +DS +A +I++ + Sbjct: 124 IDSQSAVIIVESWFEN 139 >gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845] gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845] Length = 139 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP A+ + ++ + L +I E ++ +IG Sbjct: 1 MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEF---LNQYIAKEAVSQLVIGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ NG + FV+ +P ++DER T+V A Q +I V +K R Sbjct: 58 PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDYM 134 >gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18] gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18] Length = 139 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP A+ + ++ + L +I E ++ +IG Sbjct: 1 MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEF---LNQYIVKEAVSQLVIGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ NG + FV+ +P ++DER T+V A Q +I V +K R Sbjct: 58 PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDYM 134 >gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium kroppenstedtii DSM 44385] gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM 44385] Length = 164 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 10/146 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-----VTQTALELLSFITTENIA 69 P + +D+GT RIG+A+SDP A P + R + ++ ++ Sbjct: 16 PGRR-LGLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVV 74 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLP ++GS G V + + V VP + DER+TTV AQ L D Sbjct: 75 EVIVGLPRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDA 134 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151 +S K+ +D AA ILQ LD+ Sbjct: 135 GISVKEGRSVIDQAAAVEILQTWLDQ 160 >gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium subsp. avium ATCC 25291] gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 167 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 60/147 (40%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ID+G+ RIG+A SDP A P + R + + L + +T ++ Sbjct: 19 PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 78 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP + G + R P DERLTTV+AQ+ L V K++ Sbjct: 79 GLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 138 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 +D AA ILQ LD+ G Sbjct: 139 AVIDQAAAVAILQSWLDQRRAATREAG 165 >gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17] gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574] gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17] gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574] Length = 139 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR GLA++DP + A+ + + L +++ E + +IG P Sbjct: 2 RIVSIDYGKKRTGLAVTDPLQIIANGLATV---SSVELFGFLETYVKKEGVERIVIGRPT 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR---IQ 134 MNG + F + +P ++DER T+V A + +ID V +K R Sbjct: 59 QMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQENKG 118 Query: 135 KVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 119 LVDEISATIILQDYM 133 >gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_33] gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_33] Length = 147 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++ + + ++G+ Sbjct: 1 MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL ++N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159 VD +AA++ILQ LD ++ FLE K Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146 >gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170] gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170] Length = 154 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 K LK I ++D G R G+A++D + A + K + L +++ EN+ Sbjct: 13 FAKKLK-LGRIVALDYGKVRTGIAVTDELQLIASGLTTV---KTVELISFLKKYVSEENV 68 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 F++G P M+ + + F+ ++ + +P DER T+ A Q +ID + Sbjct: 69 EKFVVGEPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIK 128 Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151 +K+R K VD I+A LILQ L++ Sbjct: 129 KKQRKNKALVDEISATLILQAYLNK 153 >gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii F0264] gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii F0264] Length = 138 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G RIG+A SDP A + R V + ++ E + GL Sbjct: 1 MKKFIGLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNP-VQRIKEILSDEGTKKIVAGL 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P +++G++ + FV + + + + DER TT A+ L + + K+R + Sbjct: 60 PKSLDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYLKNYSKKNGKERRK 119 Query: 135 KVDSIAAALILQEVLDRIS 153 VD +AA++ILQ+ LDRI Sbjct: 120 VVDMVAASIILQKYLDRIK 138 >gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5] Length = 137 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR G+A+SDP R A + K + L + E++ ++G Sbjct: 1 MGRILAIDYGTKRTGIAVSDPLRLIAGGLETVETKGLEAW---LAKYFAAEDVTTIVVGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P M+G+ + VF+DER T+V A + +++ + R R K Sbjct: 58 PTQMDGTPSETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMARRNK 117 Query: 136 --VDSIAAALILQEVLD 150 VD I+A +ILQ ++ Sbjct: 118 ALVDKISATIILQSYME 134 >gi|258620730|ref|ZP_05715765.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573] gi|258625614|ref|ZP_05720496.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603] gi|262403908|ref|ZP_06080465.1| putative Holliday junction resolvase [Vibrio sp. RC586] gi|258582116|gb|EEW06983.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603] gi|258586928|gb|EEW11642.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573] gi|262349870|gb|EEY99006.1| putative Holliday junction resolvase [Vibrio sp. RC586] Length = 140 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG AI A P E+ I I+GL Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLETITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDR 151 VD +A +IL+ + Sbjct: 121 NVDCQSAVIILESWFES 137 >gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4] gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4] Length = 141 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++G Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGY 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTTEARAELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +A +IL+ + + Sbjct: 121 NIDCQSAVVILESWFESL 138 >gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei BCC215] Length = 146 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+A+ + R A + Q + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 +VD+ AA +ILQ+ LD + Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144 >gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319] gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319] Length = 139 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP R A+ + + L ++ E + +IG Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATIPTSDI---FDYLTQYVAKEPVDQLVIGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ NG + FV+ +P ++DER T+V A Q +I V +K R Sbjct: 58 PIQPNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDYM 134 >gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1] gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 142 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 4/142 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + ++D+GTKRIG+A SDP +P P++ ++ + +I +IG Sbjct: 2 KGKRTLALDVGTKRIGVAYSDPLGISTNPLPYI--DNDEHAFEKIRDVVREYDIGTVVIG 59 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 LPL + G EG + T+ F + V F DER TT A++ L + R K+ Sbjct: 60 LPLTLKGKEGTQAKLTKEFAQKLKGYLPEDVEIEFVDERFTTSLAEKQLKETG-KRSKKR 118 Query: 134 QKVDSIAAALILQEVLDRISFL 155 +K+DS++A IL+ L++ ++ Sbjct: 119 EKIDSLSAVYILKTYLEKKQYM 140 >gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes LO28] Length = 116 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + + + + ++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKK 116 >gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 848 str. F0332] Length = 156 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ + + D+G RIG+A DP A P L R + + I Sbjct: 1 MRRGRRV-GFDVGQVRIGVAQCDPEGILATPVETLWR--GESDIDDAAQIVRDCEAMEVI 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+G+EG RA+ + + P DERL+TV+A LI + +K+ Sbjct: 58 VGLPLNMDGTEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQ 117 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 VD AA +IL L+ ++ G Sbjct: 118 RSIVDQAAAVVILNTALEMEQRTGNAPG 145 >gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01] Length = 141 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +A +IL+ + + Sbjct: 121 NIDCQSAVVILESWFESL 138 >gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 1/2a F6854] gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str. 1/2a F6854] Length = 117 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 I +D+G+K +G+AISDP A + + + + + + ++GL Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117 >gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Desmospora sp. 8437] Length = 141 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 2/133 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +DLG KR+G+A+SDP A L R+ L I + A ++GLP Sbjct: 3 RIMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS G + + R + + + +P WDERL+TV+ ++ LID ++SR+KR + VD Sbjct: 62 NMDGSIGAKGEACRQLGREL-EERFQIPVELWDERLSTVAVERTLIDADLSRRKRRKVVD 120 Query: 138 SIAAALILQEVLD 150 +AA+ ILQ L+ Sbjct: 121 RMAASWILQGYLE 133 >gi|27364899|ref|NP_760427.1| Holliday junction resolvase-like protein [Vibrio vulnificus CMCP6] gi|320155282|ref|YP_004187661.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O] gi|32130025|sp|Q8DCB1|RUVX_VIBVU RecName: Full=Putative Holliday junction resolvase gi|27361044|gb|AAO09954.1| Putative Holliday junction resolvase [Vibrio vulnificus CMCP6] gi|319930594|gb|ADV85458.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O] Length = 140 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P E+ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKALETITPRAKKFAQRLQGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 121 NVDCQSAVIILESWFE 136 >gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2] gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2] Length = 138 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G KR+GLAISD P L R ++ I E++ A ++GLPL+M Sbjct: 4 LGIDFGLKRVGLAISDRSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLSM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G + R F ++ R+ +P DERLT+ A++ L ++ KR +DS Sbjct: 64 DGEDTLTTRQARNFAQSL-GRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMALDSQ 122 Query: 140 AAALILQEVLDR 151 AA +IL+ L+ Sbjct: 123 AAVIILRTWLEN 134 >gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15] Length = 131 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GT+RIG+A+ P + + ++ S + ++GLPLNM Sbjct: 1 MAFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + +E R F + R +VP DERLT+ A+ ++ SR VD Sbjct: 61 DDTENDMCARARKFGKRLHGR-YHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDR 119 Query: 140 AAALILQEVLDR 151 AA LIL+ + Sbjct: 120 AAVLILETFFQQ 131 >gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans 2CP-1] gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans 2CP-1] Length = 137 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG RIGLA++D R A +VR+ + + + ++GLPL Sbjct: 2 RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD Sbjct: 62 NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD 120 Query: 138 SIAAALILQEVLDRIS 153 + AAA+ILQ LDR + Sbjct: 121 AEAAAVILQGWLDRRA 136 >gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113] gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113] Length = 152 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 3/142 (2%) Query: 9 LVKSLKPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 L I D G + IG+A+ A+P L + ++ I N Sbjct: 5 LDTPFPSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWN 64 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+GLPLNM+ SE + R F + R + + DERL+TV A++ L + Sbjct: 65 PDLLIVGLPLNMDQSEQFLTKAARRFGRRLHGR-YGLTIEWIDERLSTVEARERLN-IKS 122 Query: 128 SRKKRIQKVDSIAAALILQEVL 149 S R Q +D +AA ILQ L Sbjct: 123 SASGRRQGIDQMAAQCILQTWL 144 >gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411] gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411] Length = 136 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 3/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID GTK+IG+AISD A P + + ++ + I ++G+P+ Sbjct: 2 RILGIDYGTKKIGIAISDETNTIALPHGVI--DTDGEYLDKIKEIVKKNKITRIVVGMPI 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKKRIQKV 136 + G +G R T F++ + + + V WDERL+T +++IL NV RK + + + Sbjct: 60 TLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKVI 119 Query: 137 DSIAAALILQEVLDRI 152 D IAA ILQ LD + Sbjct: 120 DKIAATFILQGYLDSL 135 >gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A] gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A] Length = 136 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KRIG+A D A + R+ T +L I T ++GLP+ M Sbjct: 1 MGLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + F N I + +P + DER T++ A L VD Sbjct: 61 DGSLGSQAKQIQKFG-NRISTILNLPIEYIDERFTSLEAVSELKAQRKYSSYEKGLVDCY 119 Query: 140 AAALILQEVLDR 151 AA +ILQ LD+ Sbjct: 120 AAKIILQRWLDQ 131 >gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104] gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 165 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 60/147 (40%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ID+G+ RIG+A SDP A P + R + + L + +T ++ Sbjct: 17 PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 76 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP + G + R P DERLTTV+AQ+ L V K++ Sbjct: 77 GLPRTLADRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 136 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 +D AA ILQ LD+ G Sbjct: 137 AVIDQAAAVAILQSWLDQRRAAVREAG 163 >gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans LB400] gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1] gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400] gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1] Length = 146 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + + A P + + + I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFEAVGKLIAEWKPNALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ + F + + + + +P + DER ++V A+ + N R Sbjct: 67 LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWIDERYSSVEAKAEIRAGNG----RAD 121 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA++ILQ+ LD +S Sbjct: 122 MLDAEAASIILQQYLDGLS 140 >gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM 18603] gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM 18603] Length = 151 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D GTKRIG+A++DP + A + K + + L + + FI+G P Sbjct: 16 RIMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEY---LKKYFVLNPVERFIVGEPK 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 M+ + + FV + +P DER T+ A ++ + + R K Sbjct: 73 QMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDRQNKAL 132 Query: 136 VDSIAAALILQEVLDRIS 153 VD+I+A +ILQ ++R + Sbjct: 133 VDTISATIILQSWMERFN 150 >gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644] gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644] Length = 183 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 5/139 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAF 71 I ++D G KR+GLAISDPGR A P L R T L + + Sbjct: 1 MGTILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRL 60 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP++ +G + P+ + R + + + + ++ DER +T A +++ + +S K Sbjct: 61 VMGLPVHTSGRDSPQARAARQWGDRVAKE-LGLTIIYVDERYSTKHADELMREAGLSAAK 119 Query: 132 RIQKVDSIAAALILQEVLD 150 R ++VDS+AA +IL++ LD Sbjct: 120 RKRRVDSLAAVVILRDYLD 138 >gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. Fw109-5] gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5] Length = 137 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG RIGLA++D R A P + + + + + + ++GLPL Sbjct: 2 RYLGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGTAVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GSEG RAF + R VP +DERL+T A+ L + S ++ +VD Sbjct: 62 NMDGSEGASARYARAFAEELA-RATGVPVELFDERLSTFEAESRLREQGFSARELRGRVD 120 Query: 138 SIAAALILQEVLD 150 + AAA+ILQ LD Sbjct: 121 AEAAAVILQGWLD 133 >gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis MED134] gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis MED134] Length = 163 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + I +ID GTKR G+A++D + A + K + + L +++ E + Sbjct: 21 FLHQILQMARIIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKF---LATYLAEEKV 77 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A +IG P MN F ++ + + + DER T+ A Q +ID + Sbjct: 78 EAMVIGEPKRMNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIG 137 Query: 129 RKKRIQK--VDSIAAALILQEVL 149 +KKR K VD I+A +ILQ+ L Sbjct: 138 KKKRQNKALVDQISATIILQDYL 160 >gi|209694139|ref|YP_002262067.1| Holliday junction resolvase-like protein [Aliivibrio salmonicida LFI1238] gi|226725480|sp|B6EMV2|RUVX_ALISL RecName: Full=Putative Holliday junction resolvase gi|208008090|emb|CAQ78231.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 141 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P + T ++ I ++GL Sbjct: 3 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVGL 62 Query: 76 PLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G E + F + + R DERL+TV A+ L + + Sbjct: 63 PTDLHGKELDVITPKAKKFANRLHGR-FGNQVELHDERLSTVEARADLFEFGGYKALSKG 121 Query: 135 KVDSIAAALILQEVLDR 151 VD +A +IL+ + Sbjct: 122 NVDCQSAVVILESWFES 138 >gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM 21326] gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM 21326] Length = 140 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I S D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMSFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKLIKEWQPDLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R +P DERL+T A+ L +M + Sbjct: 62 PTDLHGRDLETITPRAKKFANRLHGR-FGLPVELHDERLSTTEARAELFNMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 121 NVDCQSAVVILESWFE 136 >gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei MSHR346] gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 146 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+A+ + R A + + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 ++D+ AA +ILQ+ LD + Sbjct: 118 --DAADRIDAEAARVILQQYLDGLPDHHE 144 >gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 668] gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668] Length = 146 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+A+ + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVNWVDERYSSVEARAGLRARG-- 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 +VD+ AA +ILQ+ LD + Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144 >gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K] gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K] Length = 137 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG RIGLA++D R A +VR+ + + + ++GLPL Sbjct: 2 RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD Sbjct: 62 NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD 120 Query: 138 SIAAALILQEVLDRIS 153 + AAA+ILQ LDR + Sbjct: 121 AEAAAVILQGWLDRRA 136 >gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3] Length = 149 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G GLA D + A P + + ++ + + ++G P+ Sbjct: 2 KIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120 Query: 138 SIAAALILQEVLDRISFL 155 ++AAA+ILQ LD + L Sbjct: 121 AVAAAVILQNYLDYKANL 138 >gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca glomerata] gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca glomerata] Length = 164 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78 ID+GT RIG+A SDP R A P L R ++ E+ + + ++GLP Sbjct: 9 VGIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTR 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G GP R + + R VP DERLTTV A + + + + + R VD Sbjct: 69 LSGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQ 128 Query: 139 IAAALILQEVLD 150 AA ILQ LD Sbjct: 129 EAAVQILQSALD 140 >gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium varium ATCC 27725] gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium varium ATCC 27725] Length = 139 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + S+D+G RIG+A SD A P + RKK T+ + T EN A ++G+P Sbjct: 3 KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135 +++G+E + R F+ + + + DERLTTVSA ++L + N ++ + Sbjct: 62 KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121 Query: 136 VDSIAAALILQEVLD 150 VD IAAA+ILQ LD Sbjct: 122 VDKIAAAIILQTFLD 136 >gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia thailandensis TXDOH] Length = 146 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 5/145 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+AI + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F + + + + +P + DER ++V A+ L Sbjct: 61 DALVVGLPLHPDGAPHEMTQQAKRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153 +VD+ AA +ILQ+ LD + Sbjct: 118 --DAANRVDAEAARVILQQFLDGLP 140 >gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei K96243] gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC 23344] gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 1710b] gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei SAVP1] gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC 10229] gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC 10247] gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 1106a] gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei DM98] gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 14] gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 91] gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 9] gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei B7210] gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 7894] gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei NCTC 13177] gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei 112] gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576] gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pakistan 9] gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1106b] gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC 10399] gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1655] gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pasteur 52237] gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei S13] gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1710a] gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 406e] gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC 23344] gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1710b] gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei SAVP1] gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC 10229] gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1106a] gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC 10247] gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 406e] gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pasteur 52237] gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC 10399] gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei S13] gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1655] gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576] gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei Pakistan 9] gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1106b] gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei 1710a] Length = 146 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+A+ + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 +VD+ AA +ILQ+ LD + Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144 >gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926] gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926] Length = 139 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+G RIG+A SD FAHP + R K T+ + EN + ++G+P Sbjct: 3 KKYLALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135 +++G E + R F+ + + + DERL+T+SA+++L + N + + + Sbjct: 62 KSLDGQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKV 121 Query: 136 VDSIAAALILQEVLD 150 VD IAAA+ILQ LD Sbjct: 122 VDKIAAAIILQTYLD 136 >gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702] gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702] gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum V10Sc8a] Length = 149 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G GLA D + A P + + ++ + + ++G P+ Sbjct: 2 KIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120 Query: 138 SIAAALILQEVLDRISFL 155 ++AAA+ILQ LD + L Sbjct: 121 AVAAAVILQNYLDYKANL 138 >gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM 20162] gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM 20162] Length = 161 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 5/143 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++D+G RIG+A+SDP A P + + + +T +IGL Sbjct: 9 RGRRLALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGL 68 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRK 130 P + G G F + F DER TTV+AQ+ L D V K Sbjct: 69 PRTLRGDRGESARMAEGFAARLATVLDATDQPSPRVCFSDERFTTVTAQRALRDNGVRAK 128 Query: 131 KRIQKVDSIAAALILQEVLDRIS 153 ++ +D AA ILQ LD Sbjct: 129 EQRAVIDQAAAVAILQGWLDERR 151 >gi|297580605|ref|ZP_06942531.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535021|gb|EFH73856.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 140 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG AI A P E+ I I+GL Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIAKQIKEWQPNLLIVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDR 151 VD +A +IL+ + Sbjct: 121 NVDCQSAVIILESWFES 137 >gi|269960441|ref|ZP_06174814.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3] gi|269834868|gb|EEZ88954.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3] Length = 141 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F + + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKALETITPRAKKFANRLQGR-YGLPVELHDERLSTAEARSELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +A +IL+ + + Sbjct: 121 NIDCQSAVVILESWFESL 138 >gi|91228684|ref|ZP_01262598.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 12G01] gi|262393233|ref|YP_003285087.1| putative Holliday junction resolvase [Vibrio sp. Ex25] gi|91187755|gb|EAS74073.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 12G01] gi|262336827|gb|ACY50622.1| putative Holliday junction resolvase [Vibrio sp. Ex25] Length = 141 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + R F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLETITPRARKFAKRLQGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 VD +A +IL+ + + Sbjct: 121 NVDCQSAVVILESWFEAL 138 >gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec] gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec] Length = 188 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGLP 76 +D+G+ R+G+A+SDP A P L R ++ EL + + ++GLP Sbjct: 32 IGVDVGSVRVGVAVSDPDGLLAVPVTTLRRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +++G EG V R + + R VP DERLTTV A + + + + + R V Sbjct: 92 RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151 Query: 137 DSIAAALILQEVLD 150 D AA ILQ LD Sbjct: 152 DQEAAVQILQHHLD 165 >gi|229519852|ref|ZP_04409286.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80] gi|229343140|gb|EEO08124.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80] Length = 140 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG AI A P E+ I I+GL Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDR 151 VD +A +IL+ + Sbjct: 121 NVDCQSAVIILESWFES 137 >gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132] gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans ND132] Length = 138 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G KR+GLA+SD P L R EL I E I A ++GLPL + Sbjct: 4 LGIDFGLKRVGLAVSDRTGTLVSPLKTLERTTRQALFDELTEIIHDEAIEAVVVGLPLAL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G + R F ++ R++ P DERLT+ A++ L + KR +DS Sbjct: 64 SGEDTLTTRQARNFAESL-GRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAALDSQ 122 Query: 140 AAALILQEVLDR 151 AA +IL+ LD Sbjct: 123 AAVVILRSWLDS 134 >gi|15640493|ref|NP_230120.1| Holliday junction resolvase-like protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590718|ref|ZP_01678050.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728570|ref|ZP_01681591.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674125|ref|YP_001215992.1| Holliday junction resolvase-like protein [Vibrio cholerae O395] gi|153216267|ref|ZP_01950360.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153802592|ref|ZP_01957178.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153819170|ref|ZP_01971837.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823173|ref|ZP_01975840.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153826577|ref|ZP_01979244.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828418|ref|ZP_01981085.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080676|ref|YP_002809227.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2] gi|229507104|ref|ZP_04396610.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286] gi|229509060|ref|ZP_04398548.1| hypothetical protein VCE_000463 [Vibrio cholerae B33] gi|229512528|ref|ZP_04401999.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21] gi|229519728|ref|ZP_04409171.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9] gi|229525157|ref|ZP_04414562.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis VL426] gi|229530308|ref|ZP_04419696.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)] gi|229606241|ref|YP_002876889.1| Holliday junction resolvase-like protein [Vibrio cholerae MJ-1236] gi|254291177|ref|ZP_04961973.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254850697|ref|ZP_05240047.1| holliday junction resolvase-like protein [Vibrio cholerae MO10] gi|255744287|ref|ZP_05418240.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101] gi|261210043|ref|ZP_05924341.1| putative Holliday junction resolvase [Vibrio sp. RC341] gi|262147288|ref|ZP_06028087.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1] gi|262164082|ref|ZP_06031821.1| putative Holliday junction resolvase [Vibrio mimicus VM223] gi|262167140|ref|ZP_06034854.1| putative Holliday junction resolvase [Vibrio cholerae RC27] gi|262172420|ref|ZP_06040098.1| putative Holliday junction resolvase [Vibrio mimicus MB-451] gi|262191077|ref|ZP_06049284.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93] gi|298501003|ref|ZP_07010804.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|32130070|sp|Q9KUP9|RUVX_VIBCH RecName: Full=Putative Holliday junction resolvase gi|172047745|sp|A5F9G8|RUVX_VIBC3 RecName: Full=Putative Holliday junction resolvase gi|254767532|sp|C3LRY3|RUVX_VIBCM RecName: Full=Putative Holliday junction resolvase gi|9654892|gb|AAF93639.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547449|gb|EAX57558.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629126|gb|EAX61569.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114356|gb|EAY33176.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124121855|gb|EAY40598.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|126510315|gb|EAZ72909.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519299|gb|EAZ76522.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146316008|gb|ABQ20547.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148876127|gb|EDL74262.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739669|gb|EDM53883.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150422871|gb|EDN14822.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008564|gb|ACP04776.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2] gi|227012319|gb|ACP08529.1| Putative Holliday junction resolvase [Vibrio cholerae O395] gi|229332081|gb|EEN97569.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)] gi|229338738|gb|EEO03755.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis VL426] gi|229344417|gb|EEO09392.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9] gi|229350421|gb|EEO15370.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21] gi|229353985|gb|EEO18919.1| hypothetical protein VCE_000463 [Vibrio cholerae B33] gi|229355849|gb|EEO20769.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286] gi|229368896|gb|ACQ59319.1| hypothetical protein VCD_001140 [Vibrio cholerae MJ-1236] gi|254846402|gb|EET24816.1| holliday junction resolvase-like protein [Vibrio cholerae MO10] gi|255738227|gb|EET93619.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101] gi|260840808|gb|EEX67350.1| putative Holliday junction resolvase [Vibrio sp. RC341] gi|261893496|gb|EEY39482.1| putative Holliday junction resolvase [Vibrio mimicus MB-451] gi|262024440|gb|EEY43127.1| putative Holliday junction resolvase [Vibrio cholerae RC27] gi|262027610|gb|EEY46276.1| putative Holliday junction resolvase [Vibrio mimicus VM223] gi|262031282|gb|EEY49897.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1] gi|262033053|gb|EEY51584.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93] gi|297540251|gb|EFH76311.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327483319|gb|AEA77726.1| Putative Holliday junction resolvase [Vibrio cholerae LMA3894-4] Length = 140 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + + D GTK IG AI A P E+ I I+GL Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDR 151 VD +A +IL+ + Sbjct: 121 NVDCQSAVIILESWFES 137 >gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC 6940] gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC 6940] Length = 180 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68 N ++D+GT RIG+A+SD A P + R+ + +L I ++ Sbjct: 13 PGNGRRLALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHV 72 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV------YVPFVFWDERLTTVSAQQIL 122 ++GLP ++ G+ V + + R P DERLTTV+A L Sbjct: 73 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTAL 132 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159 VS KK + +D AA ILQ LD R + L+S Sbjct: 133 RASGVSEKKGRKVIDQAAAVEILQSWLDARHNALQSDA 170 >gi|308094702|ref|ZP_05891280.2| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308095554|ref|ZP_05906770.2| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308126024|ref|ZP_05778717.2| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308126682|ref|ZP_05911773.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308085842|gb|EFO35537.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308090447|gb|EFO40142.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308107473|gb|EFO45013.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308113524|gb|EFO51064.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 145 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 6 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 65 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + R +P DERL+T A+ L M + Sbjct: 66 PTDLHGKDLETITPRAKKFAKRLQGR-YGLPVELHDERLSTSEARAELFSMGGYKALSKG 124 Query: 135 KVDSIAAALILQEVLDRI 152 +D +A +IL+ + + Sbjct: 125 NIDCQSAVVILESWFEAL 142 >gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6] gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6] Length = 142 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G KR G+A+SD G A PR ++ + ELL+ I E A +IGLP+N+ Sbjct: 4 LAIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLPINL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G E R F ++ R+ +P + +E L++ A++ L D S + +D Sbjct: 64 DGEESLTTRQVRNFSKSLA-RRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVLDQQ 122 Query: 140 AAALILQEVLDR 151 AA ILQ LD+ Sbjct: 123 AAVRILQSFLDQ 134 >gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 140 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P E+ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDEIEKQIKEWQPHLIVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P++++G + F + + R V DERL+T A+ L M + Sbjct: 62 PMDLHGKALESITQRAKKFANRLHGR-FGVDVELHDERLSTTEARSELFAMGGYKALTKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 121 NVDCQSAVVILESWFE 136 >gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247] gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247] Length = 143 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 2/140 (1%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAA 70 SL + +D+G+ RIG+A+ DP A P + R + + + + A Sbjct: 2 SLTRGRR-LGVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAE 60 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+GLP + G + R F + R V + DERLTTV+A Q + + K Sbjct: 61 VIVGLPKTLRNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAK 120 Query: 131 KRIQKVDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 121 SSRAVIDQAAAVAILQGWLD 140 >gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS] gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS] Length = 169 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 1/148 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72 ID+G R+G+A SDP A P + R+K + L +T + Sbjct: 17 PGRGRRIGIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP + GP H + R VP DERLTTVSAQ+ L + V K + Sbjct: 77 VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 +D +AA ILQ LD+ ++ G Sbjct: 137 RAMIDQVAAVGILQSWLDQRRAALAAPG 164 >gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. longum JDM301] gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. longum JDM301] Length = 156 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP FAHP + E+L+ I E++ I+GLPL Sbjct: 8 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126 M+G+EG R + N+ R + +P DERLTTVSA + L + + Sbjct: 68 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 127 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153 + K VD +A +ILQ LDR Sbjct: 128 KASNKHRPVVDQQSAVVILQTALDRTR 154 >gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium ulcerans ATCC 49185] gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] Length = 139 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + S+D+G RIG+A SD A P + RKK T+ + EN A ++G+P Sbjct: 3 KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135 +++G+E + R F+ + + + DERLTTVSA ++L + N ++ + Sbjct: 62 KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121 Query: 136 VDSIAAALILQEVLD 150 VD IAAA+ILQ LD Sbjct: 122 VDKIAAAIILQTFLD 136 >gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688] gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688] Length = 172 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L + D G KRIG+A+ + AHP + + + + I I Sbjct: 21 LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLI 80 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPL+++G E R F + D + +P V DERL++ A L + V +K+ Sbjct: 81 VGLPLSLDGEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 +D +AA ILQ D +S L Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162 >gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4] gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4] Length = 172 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L + D G KRIG+A+ + AHP + + + + I I Sbjct: 21 LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLI 80 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPL+++G E R F + D + +P V DERL++ A L + V +K+ Sbjct: 81 VGLPLSLDGEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 +D +AA ILQ D +S L Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162 >gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii 23-P] gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii 23-P] Length = 151 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 6/151 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M L L K L I +ID G KR G+A++D + A + ++ L Sbjct: 1 MPCLKNVFLQKQLY-MARILAIDFGKKRTGIAVTDELQIIASGLTTVNTDELLPF---LK 56 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + E + +IG P M+ S+ F+ + +P DER T+ A Q Sbjct: 57 EYSSKEKVGLILIGHPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQ 116 Query: 121 ILIDMNVSRKKRIQK--VDSIAAALILQEVL 149 +ID + +K+R K VD I+A +ILQ L Sbjct: 117 TMIDGGMKKKQRRNKAMVDEISATIILQSYL 147 >gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608] gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608] Length = 139 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP R A+ + + L +I E + +IG Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIAEEPVDRLVIGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ +G + FV+ +P ++DER T+V A Q LI V +K R Sbjct: 58 PVQPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRREN 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDYM 134 >gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium pseudotuberculosis FRC41] gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium pseudotuberculosis FRC41] gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis C231] gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis 1002] gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis I19] Length = 197 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 9/146 (6%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 N ID+GT RIG+A SD R A P + RK + LL I + Sbjct: 13 PGNGRRLGIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAV 72 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILID 124 ++GLP ++ G+ V + + + +P DERLTTV A Q L Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRA 132 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150 +S K + +D AA ILQ LD Sbjct: 133 SGISEKTGRKVIDQAAAVEILQSWLD 158 >gi|28899387|ref|NP_798992.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus RIMD 2210633] gi|153839187|ref|ZP_01991854.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|32130015|sp|Q87LJ9|RUVX_VIBPA RecName: Full=Putative Holliday junction resolvase gi|28807623|dbj|BAC60876.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747289|gb|EDM58273.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|328474083|gb|EGF44888.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus 10329] Length = 141 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKDLETITPRAKKFAKRLQGR-YGLPVELHDERLSTSEARAELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLDRI 152 +D +A +IL+ + + Sbjct: 121 NIDCQSAVVILESWFEAL 138 >gi|37681055|ref|NP_935664.1| Holliday junction resolvase-like protein [Vibrio vulnificus YJ016] gi|62901000|sp|Q7MHJ8|RUVX_VIBVY RecName: Full=Putative Holliday junction resolvase gi|37199805|dbj|BAC95635.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 140 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P E+ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F + R +P DERL+T A+ L M + Sbjct: 62 PTDLHGKALETITPRAKKFAQRLQGR-FALPVELHDERLSTTEARSELFSMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 121 NVDCQSAVIILESWFE 136 >gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum DJO10A] gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp. longum BBMN68] gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp. 12_1_47BFAA] gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum DJO10A] gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum subsp. longum BBMN68] gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp. 12_1_47BFAA] Length = 152 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP FAHP + E+L+ I E++ I+GLPL Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126 M+G+EG R + N+ R + +P DERLTTVSA + L + + Sbjct: 64 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153 + K VD +A +ILQ LDR Sbjct: 124 KASNKHRPVVDQQSAVVILQTALDRTR 150 >gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 151 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP FAHP + E+L+ I E++ I+GLPL Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126 M+G+EG R + N+ R + +P DERLTTVSA + L + + Sbjct: 64 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153 + K VD +A +ILQ LDR Sbjct: 124 KASNKHRPVVDQQSAVVILQTALDRTR 150 >gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans PsJN] gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN] Length = 146 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A P + + + I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRRARPLVIVQNRSREYRFEAVGKLIAEWKPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP + +G+ + F + + + + +P + DER ++V A+ + N R Sbjct: 67 LPFHPDGAPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAKAEIRAGNG----RAD 121 Query: 135 KVDSIAAALILQEVLDRIS 153 +D+ AA++ILQ+ LD +S Sbjct: 122 MLDAEAASIILQQYLDGLS 140 >gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205] gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205] Length = 153 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFII 73 +D+G R+G+A SDP A P L R + V EL + + ++ Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEAVEVVV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+N+ G GP + +V +++ VP DER++TV A + L + V +++ Sbjct: 70 GLPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQR 129 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 AVVDQAAAVEILQSWLD 146 >gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f] gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f] Length = 200 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76 +D+G+ R+G+A SDP A P L R + + EL + + ++GLP Sbjct: 44 IGVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVVGLP 103 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++G EG V R + + R VP DERLTTV A + + + + + R + V Sbjct: 104 RQLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRELV 163 Query: 137 DSIAAALILQEVLD 150 D AA ILQ LD Sbjct: 164 DQEAAVQILQHHLD 177 >gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440] gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440] Length = 153 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFII 73 +D+G R+G+A SDP A P L R + V EL + +T ++ Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEAVEVVV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+N+ G +GP +A+V +++ VP DER++TV A + L + V +++ Sbjct: 70 GLPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQR 129 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 AVVDQAAAVEILQSWLD 146 >gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 137 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D GTK IG+A+ A P + K +L I A ++G PLN Sbjct: 3 IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G++ + F + +P + DERL+TV A+ IL + + + +++DS Sbjct: 63 IDGTKQKITQCSENFSKKL-KNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERIDS 121 Query: 139 IAAALILQEVL 149 ++A +IL+ Sbjct: 122 MSAVIILESWF 132 >gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM 20093] gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM 20093] Length = 156 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 13/145 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG RIG A+SDP FAHP + VR E+L+ I E + ++GLPL Sbjct: 4 LGLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126 ++G+EG R +V +I R V +P DERLTTV A + L D Sbjct: 64 LDGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDAQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 V + VD +A ILQ LD+ Sbjct: 124 VQGRNHRAMVDQQSAVEILQSALDQ 148 >gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis ATCC 33277] gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277] Length = 150 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 5/141 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 I +ID G KR GLA++DP + + + L +++ E + F+ Sbjct: 10 CTDMGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDF---LRDYVSREPVERFV 66 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP MN E + R F + +P + DER T+ AQ+ +++ + + KR Sbjct: 67 LGLPRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKR 126 Query: 133 IQK--VDSIAAALILQEVLDR 151 K VD ++A +ILQ LD Sbjct: 127 RDKALVDEVSAVIILQSYLDN 147 >gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310] gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310] Length = 138 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR G+A++DP + A+ + + L ++ E + +IG P+ Sbjct: 2 RILSIDYGKKRTGIAVTDPLQIIANGLATVSTSTL---FDYLKDYVAREEVERIVIGKPM 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV+ +P ++DER T+V A + ++ + +K R K Sbjct: 59 QTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKAL 118 Query: 136 VDSIAAALILQEVLDRIS 153 VD I+A +ILQ ++ Sbjct: 119 VDEISATIILQSYMESKR 136 >gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328] gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328] Length = 148 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G +RIG+A D A +VR + + I + ++GLP Sbjct: 13 LGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLS 72 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG G + + + + + + +P + DERLT+V A+Q+L + + +D Sbjct: 73 NGELGTQARQIQKYTRRL-QKSLALPVEYVDERLTSVEAEQMLKGQKIPLSENKALIDRK 131 Query: 140 AAALILQEVLDRIS 153 AAALILQ+ LD+ Sbjct: 132 AAALILQQWLDQRR 145 >gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS 18C-A] gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS 18C-A] Length = 139 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP R A+ + + L +I TE + +IG Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIETETVERLVIGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ +G + FV+ +P ++DER T+V A Q +I V +K R Sbjct: 58 PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDYM 134 >gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1] gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1] Length = 135 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + A + + + L ++ EN+ F+IG Sbjct: 1 MARILAIDYGKKRTGIAVTDEMQLIASGLTTVRTHDLIKF---LKEYVAKENVELFLIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 58 PKQMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNK 117 Query: 136 --VDSIAAALILQEVL 149 +D I+A +ILQ L Sbjct: 118 SLIDEISATIILQSYL 133 >gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia thailandensis E264] gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia thailandensis Bt4] gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia thailandensis E264] gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia thailandensis E264] Length = 146 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+AI + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L Sbjct: 61 DALVVGLPLHPDGAPHEMTQRALRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117 Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153 +VD+ AA +ILQ+ LD + Sbjct: 118 --DAANRVDAEAARVILQQFLDGLP 140 >gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126] gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126] Length = 137 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID GTKR+GLA++DP + A P + K + Q L ++ ++E + A + G P Sbjct: 3 RVLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQY---LANYFSSEEVEAVVCGYPT 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 N G AF++ + +P DE ++ A Q +I +RK+R +K Sbjct: 60 NEEGEATDATRHVDAFINLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKKSG 119 Query: 136 -VDSIAAALILQEVLDR 151 +D I+AA+ILQ+ L+ Sbjct: 120 NIDKISAAIILQQFLEE 136 >gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] Length = 139 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+G RIG+A SD A P + R+KV + + + EN + +IG+P Sbjct: 3 KKYVALDVGDVRIGVAKSDIMGILATPLEVIDRRKV-KAVKRIEEILIQENTKSLVIGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135 +++G+E + R F+ + + DERLTTVSA ++L + N ++ + Sbjct: 62 KSLDGTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETNKKGALEKRKV 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD +AAA+ILQ LDR Sbjct: 122 VDKVAAAIILQTFLDRKK 139 >gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU 86-1044] gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU 86-1044] Length = 148 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITT------ENIAA 70 I ID G KRIGLAISD A KK+ +T L+ + + Sbjct: 4 RIIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYELKE 63 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G PL MNG G F + + +P + WDERLT+V A++ +++ + +RK Sbjct: 64 IVVGFPLKMNGKAGFISDEVTLFAETLSKA-LSIPIIKWDERLTSVQAERAMMEGSYNRK 122 Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155 KR +K+D I+A +ILQ LD + + Sbjct: 123 KRTKKLDQISAVIILQNYLDSKNLI 147 >gi|197335536|ref|YP_002155189.1| hypothetical protein VFMJ11_0433 [Vibrio fischeri MJ11] gi|226695315|sp|B5F9S6|RUVX_VIBFM RecName: Full=Putative Holliday junction resolvase gi|197317026|gb|ACH66473.1| conserved hypothetical protein [Vibrio fischeri MJ11] Length = 141 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P + T ++ I N ++GL Sbjct: 3 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGL 62 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G E + F + + R DERL+T A+ L + + Sbjct: 63 PTDLHGKELDTITPRAKKFANRLHGR-FGKQVELHDERLSTAEARADLFEFGGYKALSKG 121 Query: 135 KVDSIAAALILQEVLDR 151 +D +A +IL+ + Sbjct: 122 NIDCQSAVVILESWFEN 138 >gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8] gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8] Length = 143 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 N+ + + D GT+RIG+A P L + ++ + + ++ Sbjct: 4 PGNRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPLNM+ +E R F + R +V DERLT+ A+ ++ SR Sbjct: 64 GLPLNMDDTENEMCARARKFGKRLHGR-YHVTVEMVDERLTSYEAKGEVMAGGGSRDFGR 122 Query: 134 QKVDSIAAALILQEV 148 VD AA LIL+ Sbjct: 123 HGVDDRAAVLILETW 137 >gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus denitrificans ATCC 25259] gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC 25259] Length = 145 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + DLG KR G+A + AHP + + + A F++GL Sbjct: 7 HGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLGL 66 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +GSE R F + + + P DERLT+ +A+ L + KK Sbjct: 67 PTRADGSENEMTRVARNFARRL-ESRFERPVFLIDERLTSATAESELHARGIHGKKNKAL 125 Query: 136 VDSIAAALILQEVLD 150 D++AA LILQ D Sbjct: 126 TDAVAAQLILQGFFD 140 >gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila DSM 44928] gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM 44928] Length = 171 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 1/142 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+GT RIG+A D A P + + + L + ++GLP ++ Sbjct: 21 LGVDVGTVRIGVASCDRDGLLATPVETVKAEPRRASLDRLAALAAEYEAFEIVVGLPRSL 80 Query: 80 NGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EGP RA+ +++ R P DERL+TV+A Q L V KK VD Sbjct: 81 SGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGRSVVDQ 140 Query: 139 IAAALILQEVLDRISFLESSKG 160 AA +ILQ LD G Sbjct: 141 AAAVVILQNALDAERMSGRPPG 162 >gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 170 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G +RIG+A SD A + R+ +++ ++ +I ++G+PL Sbjct: 17 LGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLA 76 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + FV + V +P V +E L+T A+ L + + K + +D Sbjct: 77 DGSVGSQARKVQRFVRAL-QVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQ 135 Query: 140 AAALILQEVLDRISF 154 +AA+ILQ LD Sbjct: 136 SAAVILQTWLDERRA 150 >gi|59711040|ref|YP_203816.1| Holliday junction resolvase-like protein [Vibrio fischeri ES114] gi|62900895|sp|Q5E7R8|RUVX_VIBF1 RecName: Full=Putative Holliday junction resolvase gi|59479141|gb|AAW84928.1| predicted Holliday junction resolvase [Vibrio fischeri ES114] Length = 141 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P + T ++ I N ++GL Sbjct: 3 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGL 62 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G E + F + + R DERL+T A+ L + + Sbjct: 63 PTDLHGKELDTITPRAKKFANRLHGR-FGKQVELHDERLSTAEARADLFEFGGYKALSKG 121 Query: 135 KVDSIAAALILQEVLDR 151 +D +A +IL+ + Sbjct: 122 NIDCQSAVVILESWFEN 138 >gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii ATCC 33406] gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC 33406] Length = 152 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I + D GTKRIG+A +DP + A+ + K V + L ++ TE + AF++GL Sbjct: 1 MARILAFDFGTKRIGIASTDPMQIIANALDTVHPKDV---VVYLKKYLNTEPVEAFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + E + +AF++ + P DER T+ A ++ VS+K R K Sbjct: 58 PRTLQNEESSNAANVKAFINLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKGRRDK 117 Query: 136 --VDSIAAALILQEVLDR 151 +D I+A +ILQ +++ Sbjct: 118 ATIDKISATIILQSFMEQ 135 >gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 145 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 5/139 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D+G KRIG+A+SDP A P F++ + ++ I I+ +IGL Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 PL + G EG + T+ F N+ + + +F DER T+ A++ L +K + + Sbjct: 59 PLTLKGEEGEQARYTKDFAENLKNHIPQDIEIIFIDERFTSSLAEKTL--SQTKKKNKKE 116 Query: 135 KVDSIAAALILQEVLDRIS 153 K+DS++A ILQ LDR+S Sbjct: 117 KIDSLSAVFILQTYLDRLS 135 >gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05] gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1] gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05] gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1] Length = 152 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 73/144 (50%), Gaps = 13/144 (9%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IDLG R+GLA+SDPG FAHP + V E+L I N+ +IGLPL Sbjct: 4 LGIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126 ++G+EG + N+I R + V+ DERLTTVSA + L+ + Sbjct: 64 LDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQAD 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 +S KK VD +A LILQ LD Sbjct: 124 LSTKKHRPMVDQQSAVLILQSALD 147 >gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides distasonis ATCC 8503] gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503] Length = 140 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GL Sbjct: 1 MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 MN + AFV ++ +P ++DER T+V A + +++ + +KKR Sbjct: 58 RKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117 Query: 134 QKVDSIAAALILQEVLDRISF 154 VD I+A +ILQ L+ + Sbjct: 118 GLVDEISAVIILQAYLESKKY 138 >gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM 3645] gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM 3645] Length = 159 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 1/139 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + IA ID GT RIG+AI+DP R A P R+ + E I F+ Sbjct: 9 IPTVGRIAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKLERIVLFV 68 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP++M+G+E + R F + R VP V++DER TT A+ L + ++++K+ Sbjct: 69 VGLPVHMSGNESGKSGEARKFGQ-WLGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKK 127 Query: 133 IQKVDSIAAALILQEVLDR 151 +D +AA ++L L+ Sbjct: 128 KAVIDKLAAQILLTAYLEN 146 >gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152] gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152] Length = 136 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D G R G+A++D + A + ++ L +++ E + ++G Sbjct: 1 MGRILALDFGKVRTGIAVTDELQIIASGLKTVATNELLPF---LKNYLKQEKVELILLGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P M+ S+ + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 58 PKQMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNK 117 Query: 136 --VDSIAAALILQEVL 149 VD I+A +ILQ L Sbjct: 118 ALVDEISATIILQSYL 133 >gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans ES-2] gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans ES-2] Length = 170 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D GT+RIG+A+ + A P + +K + + A ++GLP Sbjct: 17 GTLLAFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLP 76 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +GS + F + R + + DER ++++A + L V + + + Sbjct: 77 CSDDGSPHELTALCQRFAKRLHGR-YGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALI 135 Query: 137 DSIAAALILQEVLDR 151 D AA ILQ D Sbjct: 136 DQYAAQQILQAYFDE 150 >gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 164 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 7/151 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENI 68 N +D+GT RIG+A+SD R A P + R L+ I Sbjct: 13 PGNGRRIGLDVGTVRIGVAVSDRDARLAMPVETVDRVTNFGDDDGADVDRLVELIGFYGA 72 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP ++ G+ V + R VP DERLTTV+A L VS Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAEDIAARLRAR-CGVPVRMGDERLTTVAATHALRASGVS 131 Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESS 158 K + +D AA ILQ LD R++ L+ + Sbjct: 132 AKAGRKVIDQAAAVEILQSWLDGRLTTLKET 162 >gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes FSL J2-003] Length = 114 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + + + + + + ++GLP Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114 >gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC 51259] gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC 51259] Length = 138 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + + + ++ L ++ T E++ F+IGL Sbjct: 1 MSRILAIDYGKKRTGIAVTDILQIIPNGLTTVATHELLNF---LKAYTTKEDVERFVIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P NG AF + +P F+DER T+ A Q ++ + +K+R +K Sbjct: 58 PRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQEK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD I+A +ILQ ++ Sbjct: 118 ALVDEISACIILQSYMESKK 137 >gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973] gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973] Length = 140 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR GLA++DP + + ++ + L +++ E + +IG P Sbjct: 5 RILSIDYGKKRTGLAVTDPLQMICGGLATVPTSELFKF---LQTYMEKEPVERIVIGEPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + + FV+ +VP F+DER T++ A + ++D + +K R K Sbjct: 62 QPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRDKAL 121 Query: 136 VDSIAAALILQEVLDRIS 153 VD I+A +ILQ L+ I Sbjct: 122 VDEISATIILQSYLESIR 139 >gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM 17132] gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM 17132] Length = 140 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G R GLA++DP + A + K Q L +I E + A ++GL Sbjct: 1 MGRILAIDYGKVRTGLAVTDPLQIIATALETV---KTDQLINYLERYIQNEEVDALVLGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PL++ + P R+F + D+ +P F DER T+ A LI V +K R Sbjct: 58 PLSLRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVK 117 Query: 134 QKVDSIAAALILQEVL 149 D I+A +ILQ L Sbjct: 118 GNTDLISAVIILQSYL 133 >gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386] gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386] Length = 137 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G RIG+A SD A P + R + + EN ++G+ Sbjct: 1 MKKYLGLDVGDVRIGVAKSDILGILATPLEVINRNDTDP-VKRIKELLQQENTNGLVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P +++G+ +V F+ + + + DER TTV A+ L + + ++R + Sbjct: 60 PKSLDGTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYLRNYSKKNPRERRK 119 Query: 135 KVDSIAAALILQEVLD 150 VD +AA++ILQ+ LD Sbjct: 120 VVDMVAASIILQKFLD 135 >gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1] gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1] Length = 137 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +IDLGTKR GLA++DP + A+P + K+ + ++I E + ++GLP Sbjct: 3 RVLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDF---IKAYIAKEEVDTLVLGLPT 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +NG + A + DER T+ A Q +I M +K R +K Sbjct: 60 KLNGKDNEMTPKVMAMKTKLEKNFPSQKVELVDERFTSKMAMQSMITMGSKKKDRREKAG 119 Query: 136 -VDSIAAALILQEVLDR 151 +D ++AA+ILQ L+R Sbjct: 120 NLDKVSAAIILQSYLER 136 >gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM 20213] gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM 20213] Length = 150 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 11/143 (7%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP FAHP + E+L+ + E++ I+GLPL Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDR---------KVYVP-FVFWDERLTTVSAQQILIDMNVS 128 M+G+EG R + N+ R + +P V DERLTTVSA + L + + Sbjct: 64 MDGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKA 123 Query: 129 RKKRIQKVDSIAAALILQEVLDR 151 K VD +A +ILQ LDR Sbjct: 124 STKHRPMVDQQSAVVILQTALDR 146 >gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway 5J108-111] gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii CbuG_Q212] gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111] gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 141 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 PNQ + D G KRIG+A+ A+ L + ++ I T + + Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ KR Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118 Query: 133 IQKVDSIAAALILQEVL 149 Q +D+ AA LIL++ L Sbjct: 119 PQHLDNYAAKLILEQWL 135 >gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha C91] gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91] Length = 157 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 I D+ + + + + D G +RIG+AI + R AHP + + ++ I Sbjct: 8 TISDMASVIL-SGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIE 66 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 T ++GL ++ +G+E + F + + + +P V DER TT A+ L + Sbjct: 67 TWQPVLLVVGLSVHADGAEHEITRLCQRFARRL-EGRFGIPVVMEDERYTTAIARLTLEE 125 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151 + ++ +K+ +D IAA ILQ D Sbjct: 126 VGITGRKQRPMLDQIAAQHILQTFFDS 152 >gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 138 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++ + + ++G+ Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLVVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL ++N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD 150 VD +AA++ILQ LD Sbjct: 120 VVDKVAASIILQTYLD 135 >gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium glutamicum ATCC 13032] gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium glutamicum ATCC 13032] gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Corynebacterium glutamicum ATCC 13032] gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium glutamicum ATCC 13032] Length = 182 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69 P + +D+GT RIG+A SD + A P + R+ + L++ + N Sbjct: 15 PGRR-LGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAV 73 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLP ++ G+ V + + + +P DERLTTV A Q L Sbjct: 74 EVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRAS 133 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158 VS K + +D AA ILQ LD R LE Sbjct: 134 GVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQ 167 >gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium glutamicum R] gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R] Length = 182 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69 P + +D+GT RIG+A SD + A P + R+ + L++ + N Sbjct: 15 PGRR-LGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAV 73 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLP ++ G+ V + + + +P DERLTTV A Q L Sbjct: 74 EVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRAS 133 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158 VS K + +D AA ILQ LD R LE Sbjct: 134 GVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQ 167 >gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803] gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803] Length = 135 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D GTKR G+A++D + A + ++ + L + E + ++G Sbjct: 1 MARILALDYGTKRTGVAVTDELKMIASGLTTVQTPELIKF---LEDYFKNEKVERVLVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P M+ + + F+ + + +P DER T+ A Q +ID + +KKR K Sbjct: 58 PKRMDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDK 117 Query: 136 --VDSIAAALILQEVL 149 VD I+A +ILQ L Sbjct: 118 ALVDEISATIILQTWL 133 >gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella denticola F0289] gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289] Length = 139 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP R A+ + + L +I TE + +IG Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIGTETVEQLVIGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ +G + FV+ +P ++DER T+V A Q +I V +K R Sbjct: 58 PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDYM 134 >gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 148 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP R + ++ L +I E + ++G Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRITPGGLATVA---SSELLQYLSEYIPREGVDLVVVGY 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN E + FV + R + V++DER T+ AQ+ +++ + ++KR K Sbjct: 58 PRQMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNK 117 Query: 136 --VDSIAAALILQEVLDRISF 154 VD ++A +ILQ ++ +++ Sbjct: 118 ALVDEVSAIIILQSYMESLAY 138 >gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis W83] gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis W83] Length = 138 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP + + + L +++ E + F++GL Sbjct: 1 MGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDF---LRDYVSREPVERFVLGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN E + R F + +P + DER T+ AQ+ +++ + + KR K Sbjct: 58 PRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDK 117 Query: 136 --VDSIAAALILQEVLDR 151 VD ++A +ILQ LD Sbjct: 118 ALVDEVSAVIILQSYLDN 135 >gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1062] gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1002] gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1062] gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter ubique HTCC1002] Length = 151 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 1/151 (0%) Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 ++ IED +DLG+KRIG++I D + A P + + + EL Sbjct: 1 MITIEDFKIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKII 60 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I NI I+G P+NM+GS G S N I + + +P + WDERL+TV A + Sbjct: 61 IKDNNIGGIIVGNPVNMDGSLGRSAQSVNDVASN-ISKSIDLPVILWDERLSTVGAFNLS 119 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 ++V+ KR++ +D AAA ILQ +D ++ Sbjct: 120 SLLDVNVSKRVKTIDQNAAAFILQGAIDFLN 150 >gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567] gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567] Length = 184 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78 +D+G R+G ++SDP A P L R + L + ++ +GLP Sbjct: 10 MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 69 Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 M G E R + H + + ++ DERLTTVSA + L + VS + Sbjct: 70 MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 129 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + ++ G Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQAVAG 156 >gi|323493583|ref|ZP_08098704.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG 20546] gi|323312106|gb|EGA65249.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG 20546] Length = 140 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P ++ G + + F + + R + DERL+T+ A+ L +M + Sbjct: 62 PTDLYGKDLETITPRAKKFANRLHGR-FGLAVELHDERLSTMEARADLFEMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 121 NVDCQSAVVILESWFE 136 >gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA 331] gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493] gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA 331] gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493] Length = 141 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 PNQ + D G KRIG+A+ A+ L + ++ I T + + Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P NM+GSE + R F + + +P DERLTT+ A++ + ++ KR Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKL-QMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118 Query: 133 IQKVDSIAAALILQEVL 149 Q +D+ AA LIL++ L Sbjct: 119 PQHLDNYAAKLILEQWL 135 >gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931] gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931] Length = 175 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78 +D+G R+G ++SDP A P L R + L + ++ +GLP Sbjct: 1 MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 60 Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 M G E R + H + + ++ DERLTTVSA + L + VS + Sbjct: 61 MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 120 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + ++ G Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQAVAG 147 >gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens YS-314] gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 204 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69 P + I +D+GT RIG+A SD R A P + R+ + L+ IT + Sbjct: 38 PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 96 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125 ++GLP ++ G+ V R + R +P DERLTTV A Q L Sbjct: 97 EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 156 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 ++ + + +D AA ILQ LD Sbjct: 157 GINERDGRKVIDQAAAVEILQTWLD 181 >gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis str. Paraca] gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 148 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 13 LKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + P I +D+G +RIG+A D A +VR + + I + Sbjct: 4 ITPKGYISALGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQI 63 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLP NG G + + + + + + +P ++DERLT++ A+++L + Sbjct: 64 LVVGLPYLSNGELGTQARQIQKYTRRL-QKSLALPVEYFDERLTSIEAEEMLKGQKIPLS 122 Query: 131 KRIQKVDSIAAALILQEVLDRISF 154 + +D AAALILQ+ LD+ Sbjct: 123 ENKALIDRKAAALILQQWLDQRRH 146 >gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC 27029] gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC 27029] Length = 153 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73 +D+G R+G+A DP A P L R V EL+ ++ Sbjct: 10 LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+N+ G GP + A+ + D +P DER++TV A + L + V K++ Sbjct: 70 GLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQR 129 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 AVVDQAAAVEILQSWLD 146 >gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5] gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5] Length = 153 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73 +D+G R+G+A DP A P L R V EL+ ++ Sbjct: 10 LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+N+ G GP + A+ + D +P DER++TV A + L + V K++ Sbjct: 70 GLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQR 129 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 AVVDQAAAVEILQSWLD 146 >gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01] gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01] Length = 140 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P K ++ I ++GL Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61 Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R V DERL+T A+ L +M + Sbjct: 62 PTDLHGKDLAAITPRAKKFANRLKGR-FGVDVELHDERLSTTEARADLFEMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 121 NVDNQSAVVILESWFE 136 >gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans Sphe3] gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter phenanthrenivorans Sphe3] Length = 199 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 5/146 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+GT R+G+AI D A P L R + + +++ + I+GLP Sbjct: 16 LGVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIVGLPRT 75 Query: 79 MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 M G E R + + R + VP DERL++V+A + L + +S + + Sbjct: 76 MKGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSSRNHRK 135 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD +AAA ILQ +D + G Sbjct: 136 VVDQVAAAGILQHAIDMQKARGADVG 161 >gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222] gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32] gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222] gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32] Length = 140 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P K ++ I ++GL Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61 Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R V DERL+T A+ L +M + Sbjct: 62 PTDLHGKDLAAITPRAKKFANRLKGR-FGVDVELHDERLSTTEARADLFEMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 121 NVDNQSAVVILESWFE 136 >gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1] gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1] Length = 144 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 5/139 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + I +ID G KR GLA +DP FA P +K+ + SF+ ++ I+G Sbjct: 5 PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKI---ITIIKSFLQENSVEKIIVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK--R 132 PLN +G++ P F+ + +P DE ++ A ++LI+ +SRKK R Sbjct: 62 YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121 Query: 133 IQKVDSIAAALILQEVLDR 151 ++DS AA L+LQ L+ Sbjct: 122 KGRLDSAAACLLLQHYLEN 140 >gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC BAA-450] gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC BAA-450] Length = 135 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 2/132 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P ++ I ++GLP ++ Sbjct: 1 MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPNLLVVGLPTDL 60 Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G + + F + + R +P DERL+T A+ L M + VD Sbjct: 61 HGKDLETITPRAKKFANRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDC 119 Query: 139 IAAALILQEVLD 150 +A +IL+ + Sbjct: 120 QSAVVILESWFE 131 >gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893] gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893] Length = 137 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GT+RIG+A P L + ++ + ++GLPLNM Sbjct: 1 MAFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + +E R F + R +V DERLT+ A+ ++ SR VD Sbjct: 61 DDTENDMCARARKFGKRLHGR-FHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDR 119 Query: 140 AAALILQEVL 149 AA LIL+ Sbjct: 120 AAVLILETWF 129 >gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 136 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID GTKR G+A++DP + A + + L + T E + F+IG P Sbjct: 2 RILAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAF---LKQYTTEEAVEGFVIGQPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +N + + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 59 RLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQE L Sbjct: 119 IDEISATIILQEFL 132 >gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109] gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109] Length = 190 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 5/146 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG 74 ++D+GT R+G+A SDP A P L R + +G Sbjct: 19 LAVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVG 78 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP +++G+EG RA+ + V DER++TVSA L S ++ + Sbjct: 79 LPRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHRE 138 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD AA +ILQ LD G Sbjct: 139 VVDQAAAVVILQHALDMERTTGRRPG 164 >gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium HTCC2207] gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium HTCC2207] Length = 145 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++ + D G K+IG+A A L ++ +T ++G Sbjct: 6 KHKRLLGFDFGLKQIGVASGQTLTLSATGLTILKAVDGIPNWEQVEKLLTEWKPDLVVVG 65 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+ SE + R F + R V DERLT+ A+ + D + + Sbjct: 66 LPLNMDDSESDLSNRARKFARRLQGR-FAVDVEMVDERLTSREAKSLGRDQGT---QDLT 121 Query: 135 KVDSIAAALILQEVLD 150 K+D IAA+LILQ LD Sbjct: 122 KIDHIAASLILQSWLD 137 >gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C] gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C] Length = 137 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ++D GTKR G+A++DP + A ++ + L S++ +E ++ ++G Sbjct: 1 MKRIIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISF---LKSYMVSEPVSTIVLGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P M+ + + AF+ + + DER T+ A Q +I + +KKR Sbjct: 58 PKQMDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEK 117 Query: 134 QKVDSIAAALILQEVLDRIS 153 +VD I+A LILQ L+RIS Sbjct: 118 GRVDQISATLILQAYLNRIS 137 >gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii ATCC 14266] gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii ATCC 14266] Length = 174 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 11/154 (7%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENIA 69 P + +D+GT RIG+A+S A P + R+ + L++ IT N+ Sbjct: 16 PGRR-LGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNNVV 74 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLP ++ G+ V + + ++ +P DERL+TV A Q L Sbjct: 75 EVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRAS 134 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158 VS K + +D AA ILQ LD R ++L + Sbjct: 135 GVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168 >gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444] gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC 15444] Length = 151 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 5/152 (3%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+++ + D L + ID GT IG+A +D R A P +++KK+ + LL Sbjct: 1 MAVVDLFD----LPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLL 56 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I+GLPLN++GS GPR S R V +++ + +P F DER ++ A Sbjct: 57 HIYDERAAVGLIVGLPLNVDGSMGPRAQSVRTLVSSLLKVR-DLPVTFQDERYSSAEAGD 115 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 I+ +R+ R ++D+ AAA+ILQ+ L R+ Sbjct: 116 IMRAAGATRRNREARIDASAAAVILQDALSRL 147 >gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 138 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKK+ ++ + + ++G+ Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKI-KSVKRIAEICKENDTNLIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL ++N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD 150 VD +AA++ILQ LD Sbjct: 120 VVDKVAASIILQTYLD 135 >gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium HTCC5015] gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium HTCC5015] Length = 141 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ID G KRIG+A A P L L + A ++GLPL Sbjct: 3 TLLGIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGLPL 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL----IDMNVSRKKRI 133 N +GS+ R F + + + P + DER ++ A+Q L ++ RK + Sbjct: 63 NKDGSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKVKK 121 Query: 134 QKVDSIAAALILQEVLDR 151 + +D +AAALILQ L++ Sbjct: 122 EDIDQLAAALILQRWLNK 139 >gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium mcbrellneri ATCC 49030] gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium mcbrellneri ATCC 49030] Length = 147 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 2/145 (1%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73 ID+G R+G+A SDP A P + R+ AL + I E + +I Sbjct: 2 RRGRRLGIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVI 61 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G P +++G R F ++DR +P + DER TT A +L + + K+R Sbjct: 62 GDPTSLDGKARQSADKARRFAQKIVDR-TGLPVRYVDERFTTTQAHLMLQEAGKTSKQRR 120 Query: 134 QKVDSIAAALILQEVLDRISFLESS 158 + VD+ AA +ILQ LD ++ ++S Sbjct: 121 ETVDAQAAVVILQTALDALAREDNS 145 >gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM 10152] gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 180 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 6/153 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTEN 67 ID+G+ RIG+A SDP A P + R K V+ + + Sbjct: 16 PGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYE 75 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I+GLP + G +G + AF + V DERLTTVSA + L D V Sbjct: 76 AVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGV 135 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + + Q +D AA ILQ LD S + S G Sbjct: 136 RARGQRQVIDQAAAVSILQGWLDERSAVMRSVG 168 >gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068] gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068] Length = 153 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D GT RIGLAI+DP ++FA P R+ A E AA+++GL Sbjct: 7 RGRLIGVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGL 66 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P++ GSE + R F + + +P +DER T+ A+++LI +SRK+R Sbjct: 67 PVHTTGSESQKSTEARQFAKQL-EELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSH 125 Query: 136 VDSIAAALILQEVL 149 +D +AA ++L L Sbjct: 126 LDKLAAQILLSAFL 139 >gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC 14018] Length = 156 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 13/144 (9%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78 IDLG R+G A+SDP FAHP + ++L+ I +++ +IGLPL Sbjct: 4 LGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126 ++G+EG R + N++ R + V+ DERLTTV+A + L+D + Sbjct: 64 LDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDAD 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 S +K VD +A LILQ +D Sbjct: 124 FSTRKHRPMVDQQSAVLILQSAID 147 >gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM 15434] gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM 15434] Length = 160 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D+G R+G+A D A P L R + E + ++GLP+ + Sbjct: 9 LAFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQL 68 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G R + + R VP DERL+TVSA Q L K VD Sbjct: 69 SGGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQA 128 Query: 140 AAALILQEVLD 150 AA +IL++ L+ Sbjct: 129 AAVVILEQALE 139 >gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B] gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B] Length = 173 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 2/150 (1%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAA 70 +++P I +D+GT RIG+A+SDP R A P L R L + Sbjct: 5 AVRPGVRI-GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAVE 63 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++GLP+++ G+ G + + VP DER TTV A + L ++ + Sbjct: 64 VVVGLPVSLRGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAGR 123 Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160 +R VD +AAA++LQ+ LD G Sbjct: 124 QRRAVVDQLAAAILLQDALDAERATGRPPG 153 >gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187] gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165] gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137] gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187] gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165] gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137] gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266] Length = 160 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133 Query: 140 AAALILQEVLDRISFLES 157 AA IL+ VL+++ +S Sbjct: 134 AAVAILEHVLEQVRLGQS 151 >gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium BAL38] gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium BAL38] Length = 137 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID G KR G+A++D + A + + L + + E + + IIG P Sbjct: 3 RILAIDYGIKRTGIAVTDEMQMIAFGLTTIPSET---AITFLKDYFSKEKVESVIIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MNG AFV + +P DER T+ A Q +ID +++K+R K Sbjct: 60 QMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKAL 119 Query: 136 VDSIAAALILQEVL 149 VD IAA +ILQ+ L Sbjct: 120 VDEIAATIILQDYL 133 >gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens DSM 45100] Length = 192 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +S ID+GT RIGLA+SDP A P + + ++ + + Sbjct: 34 AQSDPGRGRRLGIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVV 93 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-----VPFVFWDERLTTVSAQQILID 124 IIGLP+ + G+ +AF + D +P DER++TV+A + Sbjct: 94 EVIIGLPVALRGNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHA 153 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150 V+ KK +++D AA ILQ LD Sbjct: 154 SGVNVKKGRKRIDQAAAVHILQGWLD 179 >gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 144 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G+ RIG+AISDP FA FL + L LL I N+ +IGLP+ Sbjct: 4 ILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLTLL--IRKHNVKKVVIGLPIR 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 NG + + + ++ + F+ WDER TT AQ L D +S KK+ +VD Sbjct: 62 TNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNRVDM 121 Query: 139 IAAALILQEVLDRIS 153 IAA ++LQ LD + Sbjct: 122 IAATVLLQSYLDYSN 136 >gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327] gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I ID GTKRIG+A SDP FA P + + L E I ++G Sbjct: 5 HKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGL---LGALSKIRNEEGIERIVVGY 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PL+ G E F + VP DE ++ SA ++L SRKKR Sbjct: 62 PLSDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEK 121 Query: 134 QKVDSIAAALILQEVLDRIS 153 ++D+ AA LILQ LD + Sbjct: 122 GRLDTAAACLILQSWLDSRA 141 >gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens F0305] gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Parascardovia denticolens DSM 10105] gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens F0305] gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Parascardovia denticolens DSM 10105] Length = 176 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 14 KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAF 71 +P++ + +DLG R+G+AISDP FAHP + Q E+ I ++ Sbjct: 27 RPSRSVWLGLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHV 86 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-----YVPFVFWDERLTTVSAQQILIDMN 126 +IG PL ++G+EG R F + R V DER+TTV A L+D Sbjct: 87 VIGYPLQLDGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAG 146 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 + ++ VD +A LILQ LD Sbjct: 147 IGSRRHRPLVDQQSAVLILQAALD 170 >gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii ATCC 33806] gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii ATCC 33806] Length = 174 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 11/154 (7%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENIA 69 P + +D+GT RIG+A+S A P + R+ + L++ IT ++ Sbjct: 16 PGRR-LGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNDVV 74 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125 I+GLP ++ G+ V + + ++ +P DERL+TV A Q L Sbjct: 75 EVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRAS 134 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158 VS K + +D AA ILQ LD R ++L + Sbjct: 135 GVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168 >gi|269965748|ref|ZP_06179845.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B] gi|269829616|gb|EEZ83853.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B] Length = 136 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P ++ I ++GLP ++ Sbjct: 1 MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60 Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G + R F + R +P DERL+T A+ L M + VD Sbjct: 61 HGKDLETITPRARKFAKRLQGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKGNVDC 119 Query: 139 IAAALILQEVLDRI 152 +A +IL+ + + Sbjct: 120 QSAVVILESWFEAL 133 >gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891] gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891] Length = 141 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P ++ I ++GL Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLVVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + + F + + R V DERL+T A+ L M + Sbjct: 62 PTDLHGRDLETITPRAKKFANRLHGR-FGVAVELHDERLSTTEARADLFAMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 121 NVDCQSAVVILESWFE 136 >gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1] gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter aurescens TC1] Length = 196 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 9/151 (5%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73 P+ +D+GT R+GLA+ DP A P + R K L+ + Sbjct: 11 PHGIKLGVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFV 70 Query: 74 GLPLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 GLP M G E + ++ + VP DERL+TV+A + L +S Sbjct: 71 GLPRTMKGEERASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSS 130 Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160 K + VD +AAA ILQ +D ++ ++G Sbjct: 131 KNHRKVVDQVAAAGILQHAID----MQKARG 157 >gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271] gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271] Length = 143 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID GTKR G+A++DP + A + + L + E + AF+IG P Sbjct: 2 RLLAIDYGTKRTGIAVTDPLQIIASGLCTVETSTLLAF---LKQYTAEEAVEAFVIGQPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MN + + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 59 RMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQE L Sbjct: 119 IDEISATIILQEFL 132 >gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23] gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23] Length = 137 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I SID G KR GLA++DP + A + ++ L ++I E + +IG Sbjct: 1 MARILSIDYGKKRTGLAVTDPLQIIAGGLATVATSELFDF---LKAYIAREQVEMIVIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P NG + + FV+ VP ++DER T+V A Q ++D + +K R Sbjct: 58 PRQPNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNK 117 Query: 134 QKVDSIAAALILQEVL 149 VD I+A +IL++ + Sbjct: 118 GLVDEISATIILEDFM 133 >gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216] gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216] Length = 137 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR G+A+SDP R A + K + + L + +++ +IG Sbjct: 1 MGRILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERW---LAQYFAANDVSTIVIGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ M+G+ + VF+DER T+V A + +++ + + R K Sbjct: 58 PMQMSGAPSETWRYVEPLAARLRRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 VD I+A +ILQ ++ S Sbjct: 118 ALVDKISATIILQGYMESRS 137 >gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN] gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae Br4923] gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%) Query: 8 DLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 DL K+L P + ID+G+ RIG+A SDP A P + R + + L + Sbjct: 16 DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 + ++GLP + G + R VP DERLTTVSAQ++L Sbjct: 76 QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISF 154 V K + +D AA +ILQ LD+ Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQCRA 163 >gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium SWAT-3] gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium SWAT-3] Length = 140 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P K ++ I ++GL Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61 Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F + + R V DERL+T A+ L DM + Sbjct: 62 PTDLHGRALETITPRAKKFANRLKGR-FGVDVELHDERLSTAEARADLFDMGGYKALSKG 120 Query: 135 KVDSIAAALILQEVLD 150 VD+ +A +IL+ + Sbjct: 121 NVDNQSAVVILESWFE 136 >gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL001PA1] Length = 160 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E + R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 74 NGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133 Query: 140 AAALILQEVLDRISFLES 157 AA IL+ VL+++ +S Sbjct: 134 AAVAILEHVLEQVRLGQS 151 >gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1] gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1] Length = 137 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR G+A++D + A+ + + L +++ E + +IG P+ Sbjct: 2 RILSIDYGKKRTGIAVTDSLQIIANGLATVATSALFDF---LKTYVAQEEVERIVIGKPM 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV+ +P F+DER T+V A Q ++ + +K R K Sbjct: 59 QTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKAL 118 Query: 136 VDSIAAALILQEVLDRIS 153 VD ++A +ILQ ++ Sbjct: 119 VDEVSATIILQSYMESRR 136 >gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Pseudoramibacter alactolyticus ATCC 23263] gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Pseudoramibacter alactolyticus ATCC 23263] Length = 143 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + I +D+G K +G+A+SD A + +T NI + GLP Sbjct: 3 EKILGLDIGDKYVGIAVSDALGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +M+G E +V T+ + + + R + + ++ DERLTT +++ +LI V R+ R Q + Sbjct: 63 KDMDGRETAQVRKTKNYCNFLAKR-LGLEVIYIDERLTTRASEAVLIAGGVRRENRKQHI 121 Query: 137 DSIAAALILQEVLDRIS 153 D+++A LILQ LDR + Sbjct: 122 DTLSAQLILQMYLDREN 138 >gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314] gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314] Length = 188 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69 P + I +D+GT RIG+A SD R A P + R+ + L+ IT + Sbjct: 22 PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 80 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125 ++GLP ++ G+ V R + R +P DERLTTV A Q L Sbjct: 81 EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 140 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 ++ + + +D AA ILQ LD Sbjct: 141 GINERDGRKVIDQAAAVEILQTWLD 165 >gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC 14019] gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC 14019] Length = 166 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 13/144 (9%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78 IDLG R+G A+SDP FAHP + ++L+ I +++ +IGLPL Sbjct: 14 LGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQ 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126 ++G+EG R + N++ R + V+ DERLTTV+A + L+D + Sbjct: 74 LDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDAD 133 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 S +K VD +A LILQ +D Sbjct: 134 FSTRKHRPMVDQQSAVLILQSAID 157 >gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010] gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010] Length = 139 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP R A+ + ++ L+++I +E + +IG Sbjct: 1 MGRILAIDYGKKRTGIAVTDPLRIIANGLATVPTSELYDY---LVAYIRSEAVDKIVIGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P+ NG F + + +P F+DER T+V A Q +I V +K R Sbjct: 58 PIQANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRRED 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDFM 134 >gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202] gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium acnes KPA171202] Length = 160 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 74 NGTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133 Query: 140 AAALILQEVLDRISFLES 157 AA IL+ VL+++ +S Sbjct: 134 AAVAILEHVLEQVRLGQS 151 >gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735] gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735] Length = 144 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I SID G KR GLA++D + A+ + + L +I E + +IG Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSL---IDYLKDYIAKEPVERIVIGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ- 134 P +G + FV+ +P ++DER T+V A Q++ID V +K R + Sbjct: 58 PTQPDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKEN 117 Query: 135 --KVDSIAAALILQEVL 149 +D I+A +ILQ+ + Sbjct: 118 KGLIDEISATIILQDYM 134 >gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus Mu50] gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus subsp. aureus N315] gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus Mu3] gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30] gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3] gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp. aureus Mu50] gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3] gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30] gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus 04-02981] Length = 123 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 33 ISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90 +SD A + + +L+ I N+ +IGLP NMN S G R ++ Sbjct: 1 MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEAS 60 Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + +++ + V WDERL+T++A++ L++ +VSR+KR Q +D +AA ILQ LD Sbjct: 61 LTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLD 120 Query: 151 RI 152 + Sbjct: 121 SL 122 >gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 143 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + +D+G K +G+A+SDP A P L R A ++ + + A +IGLP Sbjct: 3 ERVIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK--KRIQ 134 +NG G + + F + VP +F DER +T SA+ I+ RK + Sbjct: 63 RLLNGVVGTQAERVQYFARRLAS-LTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRE 121 Query: 135 KVDSIAAALILQEVLDR 151 + D++AAA+ILQ+ LD Sbjct: 122 RDDAVAAAVILQDWLDE 138 >gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia heliotrinireducens DSM 20476] gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia heliotrinireducens DSM 20476] Length = 138 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIGLA+SD R A P L V E + I + GLP Sbjct: 2 RVLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M G EGP+ S + + + +P F DERL++ A++IL + + + KVD Sbjct: 62 TMAGEEGPQAASIKEKARQIASAR-DLPLSFVDERLSSAEAKRILREEGLDERSMRGKVD 120 Query: 138 SIAAALILQEVLDR 151 IAA+L LQ LD Sbjct: 121 MIAASLFLQAWLDS 134 >gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1] gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1] Length = 141 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GTK IG AI A P K ++ + + ++GL Sbjct: 3 SRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVGL 62 Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +++G + F N + + + DERL+T A+ L +M + Sbjct: 63 PTDLHGKALEEITARAKKFA-NRVHGRFGLQVELHDERLSTAEARAELFEMGGYKALSKG 121 Query: 135 KVDSIAAALILQEVLD 150 VD +A +IL+ + Sbjct: 122 NVDCQSAVVILESWFE 137 >gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium SGP1] Length = 146 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGL 75 + ++D+G+ R+G AISDP R A + + ++G+ Sbjct: 7 GRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPTLVLVGM 66 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G+ GP V + + F WDER TTV A + +I+ VSR R Q+ Sbjct: 67 PTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSRSGRRQR 126 Query: 136 VDSIAAALILQEVLDR 151 VD IAA LIL+ L R Sbjct: 127 VDKIAAVLILESWLAR 142 >gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium SCB49] gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium SCB49] Length = 136 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + A + K+ L S++ EN+ A ++G Sbjct: 1 MGRILAIDYGGKRTGIAVTDEMQIIASGLTTVETSKLLPF---LESYLANENVTALVVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G+ + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 58 PTQKDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNK 117 Query: 136 --VDSIAAALILQEVL 149 VD IAA +ILQE + Sbjct: 118 ALVDEIAATIILQEFM 133 >gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304] gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304] Length = 166 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG RIGLA+SDP FAHP + +++ I ++ ++G PLN Sbjct: 8 LGLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHIVLGYPLN 67 Query: 79 MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 ++G+EG R F + + + DER+TTVSA +L+ +S ++ Sbjct: 68 LDGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGMSSRQHRA 127 Query: 135 KVDSIAAALILQEVLDR 151 VD+ +A +ILQ LD Sbjct: 128 VVDTQSAVVILQSALDS 144 >gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN] gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN] Length = 139 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I S+D G KR GLA++DP + A+ + ++ L ++ EN+ ++G Sbjct: 1 MGRILSVDYGKKRTGLAVTDPLQIIANGLVTVATSELFDF---LKDYVQRENVECIVVGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P +NG + FV+ +P ++DER T+ AQQ ++ V +K R Sbjct: 58 PTQLNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRRED 117 Query: 133 IQKVDSIAAALILQEVL 149 VD ++A +ILQ+ + Sbjct: 118 KGLVDEVSATIILQDYM 134 >gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC 49989] gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC 49989] Length = 148 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G IG+A SD A + R+ + + +++ + ++ + +IG+PL Sbjct: 2 RVLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMPL 61 Query: 78 NMNGS-EGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 N G + + T F + ++ + F+DER TT A+ +LI + KK Sbjct: 62 NTYGEAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGKK 121 Query: 132 RIQKVDSIAAALILQEVLDRISFLES 157 + +D AA ++LQ LD+ S+ + Sbjct: 122 QKDVIDKQAAVILLQSYLDKKSYRDE 147 >gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC 33269] gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC 33269] Length = 137 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR G+A++DP + A + ++ L+ ++ E + +IG P+ Sbjct: 3 RILSIDYGRKRTGVAVTDPLQLIAGGLATVATSELFNY---LMQYVQHEEVERIVIGKPM 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG + FV +P ++DER T+V AQ+++ID + +K R K Sbjct: 60 QTNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKAL 119 Query: 136 VDSIAAALILQEVL 149 VD I+A +IL++ + Sbjct: 120 VDEISATIILEDWM 133 >gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae UW101] gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101] Length = 138 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G KR G+A++D + A + + L + E + A +IG P Sbjct: 3 RILSIDYGQKRTGIAVTDEMQIIASGLTTIPTHTLIDF---LKDYFAKEKVEAVLIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135 MNG FV + + + + DER T+ A Q ++D +S+K+R Sbjct: 60 QMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGL 119 Query: 136 VDSIAAALILQEVLDRISF 154 +D I+A ++LQ+ L F Sbjct: 120 IDEISATIMLQDYLSSKRF 138 >gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287] gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287] Length = 143 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID GTKR G+A++DP + A + + L + E + AF+IG P Sbjct: 2 RLLAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAF---LKQYTAEEAVEAFVIGQPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MN + + F+ + +P DER T+ A Q +ID + +K+R K Sbjct: 59 RMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118 Query: 136 VDSIAAALILQEVL 149 +D I+A +ILQE L Sbjct: 119 IDEISATIILQEFL 132 >gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC BAA-1116] gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116] Length = 136 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P ++ I ++GLP ++ Sbjct: 1 MAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60 Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G + + F + + R +P DERL+T A+ L + + +D Sbjct: 61 HGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTAEARAELFSIGGYKALSKGNIDC 119 Query: 139 IAAALILQEVLDRI 152 +A +IL+ + + Sbjct: 120 QSAVVILESWFENL 133 >gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180] gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180] Length = 135 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 2/132 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G ++IG+A+ R A P L + + + I +A ++GLP Sbjct: 2 TLLGFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPF 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+ +E F + + + +P DERLT+ A + L + + R ++ VD Sbjct: 62 QMDDTEVAWSPRVHRFARQL-EGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAVD 119 Query: 138 SIAAALILQEVL 149 ++AAALIL+ L Sbjct: 120 ALAAALILETWL 131 >gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase Length = 181 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69 P + I +D+GT RIG+A SD R A P + R+ + L+ IT + Sbjct: 15 PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 73 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125 ++GLP ++ G+ V R + R +P DERLTTV A Q L Sbjct: 74 EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 133 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 ++ + + +D AA ILQ LD Sbjct: 134 GINERDGRKVIDQAAAVEILQTWLD 158 >gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL082PA2] gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL060PA1] gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL050PA2] gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes HL103PA1] Length = 160 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133 Query: 140 AAALILQEVLDRISF--LESSKG 160 AA IL+ VL+++ LE++ G Sbjct: 134 AAVAILEHVLEQVRLGQLETATG 156 >gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302] gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302] Length = 144 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I SID G KR GLA++D + A+ + + L +I E + +IG Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSL---IDYLKDYIAKEPVERIVIGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ- 134 P +G + FV+ +P ++DER T+V A Q++ID V +K R + Sbjct: 58 PTQPDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKEN 117 Query: 135 --KVDSIAAALILQEVL 149 +D I+A +ILQ+ + Sbjct: 118 KGLIDEISATIILQDYM 134 >gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A] gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A] Length = 139 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++DP R A+ + + L +I E + ++G Sbjct: 1 MGRIIAIDYGKKRTGIAVTDPLRIIANGLATV---STPELYAFLQEYIQREKVDLIVMGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P ++G + FV VP ++DER T+ A Q +I V +K R Sbjct: 58 PTQLSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQD 117 Query: 133 IQKVDSIAAALILQEVL 149 VD I+A +ILQ+ + Sbjct: 118 KGLVDEISATIILQDFM 134 >gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317] Length = 124 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75 + +D+G+K +G+A+SDP A + + + L + + F++GL Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR + Sbjct: 62 PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120 >gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 183 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 ++D+GT RIG+A+S+ A P + R+ + +L I + + Sbjct: 14 PGQGRRLALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDA 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120 ++GLP ++ G+ V + + R KV P DERLTTV+A Sbjct: 74 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158 L VS KK + +D AA ILQ LD R S L S Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172 >gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 140 Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFII 73 + ID G RIG+A+SD A + ++ T+ + +AA +I Sbjct: 1 MEKYLGIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVI 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP +G G R +++ + ++ DER TTV A ++L + V ++++ Sbjct: 61 GLPRRTDGKIGVSEEKARQLG-DLLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKR 119 Query: 134 QKVDSIAAALILQEVLDRIS 153 VD +AA +ILQ+ L+ + Sbjct: 120 SVVDQVAAEIILQDFLESLR 139 >gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC BAA-798] gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC BAA-798] Length = 149 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID G KRIG+A+SDP A + R + E+ EN+ ++GLPL+ Sbjct: 3 VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 M+G EG R I+ +P DERLT+V A++ L++ K + Sbjct: 63 MSGYEGEEAVRARELAKQ-IETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKKLA 121 Query: 136 VDSIAAALILQEVLDRISFLESS 158 +D+ AAA++LQ+ LD+ + + Sbjct: 122 IDAEAAAVLLQDYLDQERLRQRA 144 >gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU Goat Q177'] gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii CbuK_Q154] gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU Goat Q177'] gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 141 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 PNQ + D G KRIG+A+ A+ L + ++ I T + + Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHANVLV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ KR Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPLSMVDERLTTIEAKRQWYEQGLT--KR 118 Query: 133 IQKVDSIAAALILQEVL 149 Q +D+ AA LIL++ L Sbjct: 119 PQHLDNYAAKLILEQWL 135 >gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC1989] gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium IMCC1989] Length = 139 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D G + IG+A A + K ++ + + ++GLPLNM Sbjct: 6 LAFDYGLQNIGVAYGQSLTGQATELAPINAKDGIPRWEDIAALLQEWKPTTVVVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE R F + R V F DERL+T A+Q + +DSI Sbjct: 66 DDSESELCARARKFGRRLHGR-FSVDVEFMDERLSTFDAKQEAKARGHKGNYKQNPIDSI 124 Query: 140 AAALILQEVL 149 AA LIL+ Sbjct: 125 AARLILESWF 134 >gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 143 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + P+ ID G +RIG+A+ L + + A ++G Sbjct: 4 RSGPLLGIDFGERRIGIAVLGESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLG 63 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL+M+GSEG V R F ++ R+ +P + DERL++ +A +L + +S KKR + Sbjct: 64 LPLHMDGSEGFMVGRVRKFAESL-QRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGR 122 Query: 135 KVDSIAAALIL 145 +D AA IL Sbjct: 123 LLDQAAACEIL 133 >gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237] gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237] Length = 136 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 5/139 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D G R G+A++D + A + K++ L +++ TE + ++G Sbjct: 1 MARIVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDF---LKNYVATEKVELLVVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN F+ + + DER T+ A Q +ID + +K+R K Sbjct: 58 PKQMNNQVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRDK 117 Query: 136 --VDSIAAALILQEVLDRI 152 VD I+A +ILQ L+RI Sbjct: 118 ALVDEISATIILQAYLNRI 136 >gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens BL2] Length = 150 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+ RIG+A SDP A P + R L I +IG P ++ Sbjct: 1 MGLDIGSVRIGVAASDPDGILATPLTVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS + F I P DER TTV A L + ++R + VD+ Sbjct: 61 DGSARAAAATALEFAKR-ISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119 Query: 140 AAALILQEVLDR 151 AA +ILQ L+ Sbjct: 120 AAVIILQNALEY 131 >gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A] gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A] Length = 140 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ID GTKR GLA +DP + A L +V L + E + F++G Sbjct: 1 MGSLIGIDFGTKRTGLACTDPLKIIASGLKNLSTPEVIPF---LKKYCEMEEVDTFVVGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PL +G+ + F+ + ++ +DER T+ A Q +I+ + +K+R Sbjct: 58 PLQKDGTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADK 117 Query: 134 QKVDSIAAALILQEVLD 150 +D ++A LILQ LD Sbjct: 118 GMIDQVSATLILQSYLD 134 >gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810] gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium DSM 4810] Length = 181 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 7/164 (4%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS+ P +D+G R+GLA SD A P L R ++ Sbjct: 1 MSVAEGTGAEAGGLPRGVRLGVDVGDVRVGLARSDLDGMIATPVETLERGS---AVARVV 57 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTV 116 ++GLP ++NG+EG R F ++ + DERLTTV Sbjct: 58 EEARELEARVIMVGLPRSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTV 117 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +A Q L +K VD +AA +ILQ+ LD + G Sbjct: 118 TAHQALHRSGRKGRKHRSVVDQVAAVMILQQALDTERATGARAG 161 >gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 162 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KR+G+A D A ++R + + + NI + GLP M Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G G + + + + + +P + DER T++ A++ L +D Sbjct: 67 AGELGFQAKQVQKYAQKLA-ITLDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125 Query: 140 AAALILQEVLDRISFLESS 158 AAA+ILQ+ LDR + +S Sbjct: 126 AAAIILQQWLDRRRRVNNS 144 >gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei F0204] gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei F0204] Length = 139 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 +DLG+ G++ SD A + K ++L + E ++GL Sbjct: 3 RYLGLDLGSVTCGVSFSD-TGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL +N GPR F + +++ +P DER TT A+ IL++ +VSRKKR +K Sbjct: 62 PLLLNDDVGPRAQICLEFGEVL-EQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKK 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA ILQ LDR Sbjct: 121 IDQLAAVQILQTWLDR 136 >gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231] gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231] Length = 143 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 3/138 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 D G +R+G+A+ P A P L ++ LL I A ++G+P + Sbjct: 7 LGFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHT 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137 +GS AF + +++ +P DERL++ A+ L + VD Sbjct: 67 DGSASETTLQAVAFAQRL-EQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVD 125 Query: 138 SIAAALILQEVLDRISFL 155 AA +IL+ L+ L Sbjct: 126 QFAAQIILETWLNEQRLL 143 >gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17] gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17] Length = 156 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP FAHP + + ++++ I E + ++GLPL Sbjct: 8 LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126 ++G+EG R + N+ R + DERLTTVSA + L++ Sbjct: 68 LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 127 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 + ++ VD +A +ILQ LD Sbjct: 128 LGSRRHRPVVDQQSAVVILQTALD 151 >gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 148 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 LK I +ID GTKR G+A++D + A + + T+ L + +E++ I Sbjct: 10 LKAQMRILAIDYGTKRCGIAVTDELKLIASALATV---ETTELLDFLQQYCQSESVERII 66 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP +G + +F+ + ++ +P +DER T+ A IL++ +KKR Sbjct: 67 IGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKKR 126 Query: 133 --IQKVDSIAAALILQEVLDRI 152 +D I+A LILQ+ L + Sbjct: 127 QDKALLDRISATLILQDYLSSL 148 >gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881] gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881] Length = 133 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT++IG+A + A P L K ++ + + A ++GLPLN Sbjct: 2 ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS+ R F + + R DERL+T A++ + + +VDS Sbjct: 62 MDGSDSESTARARKFANRLHGR-FGKKVWLVDERLSTREARER---TGIQKAD--PRVDS 115 Query: 139 IAAALILQEVL 149 +AA +I + Sbjct: 116 MAAVVIAEGYF 126 >gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4] gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4] Length = 166 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72 ++D+G+ R+G+A+SDP A P L R K L +T + I Sbjct: 17 PGRGRRLAVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVI 76 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP + +G A+ + R VP DERLTTV+A ++L V +K+ Sbjct: 77 VGLPRTLANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQ 136 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 VD AA ILQ LD + + KG Sbjct: 137 RAVVDQAAAVEILQAWLDAAAAHRARKG 164 >gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] Length = 183 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 ++D+GT RIG+A+S+ A P + R+ + +L I + + Sbjct: 14 PGQGRRLALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDA 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120 ++GLP ++ G+ V + + R KV P DERLTTV+A Sbjct: 74 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158 L VS KK + +D AA ILQ LD R S L S Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172 >gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis audaxviator MP104C] gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis audaxviator MP104C] Length = 141 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G +RIG+A++D A+P L R + + I + + GLP Sbjct: 2 RLMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G GP+ +F+ + R VP + WDERLTT +++L+ ++ R++R + VD Sbjct: 62 TLSGQIGPQGDKVLSFLDKLRVRST-VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVD 120 Query: 138 SIAAALILQEVLDRIS 153 +AA LIL L+ Sbjct: 121 KLAATLILNSYLNSRK 136 >gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 144 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID GT+R G+A++D A PR +V ELLS + E A ++GLPL Sbjct: 4 LGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLA 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G E R FV + R+ +P E L++ A + L + +S ++R VD Sbjct: 64 GGEETLITRQVRNFVARL-RRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQ 122 Query: 140 AAALILQEVLD 150 AA IL+ L+ Sbjct: 123 AAVRILESFLN 133 >gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL013PA1] gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL074PA1] gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA1] gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA2] gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL087PA2] gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL083PA1] gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL025PA1] gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL059PA1] gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL046PA2] gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL036PA1] gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL036PA2] gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL063PA1] gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL063PA2] gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL007PA1] gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL056PA1] gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL086PA1] gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA4] gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL050PA1] gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL050PA3] gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL036PA3] gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL067PA1] gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL027PA1] gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL002PA1] gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL002PA2] gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL082PA1] gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL037PA1] gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL053PA1] gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL045PA1] gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL072PA2] gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA1] gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA2] gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL005PA3] gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL053PA2] gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL078PA1] gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL027PA2] gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL002PA3] gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL072PA1] gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL038PA1] gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL059PA2] gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL046PA1] gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL030PA1] gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL030PA2] gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes HL096PA2] gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes HL097PA1] gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes HL096PA3] gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL013PA2] gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL043PA2] gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL043PA1] gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL087PA3] gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL092PA1] gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL083PA2] gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL025PA2] gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL020PA1] gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL087PA1] gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes HL099PA1] Length = 147 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 3 LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 61 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120 Query: 140 AAALILQEVLDRISFLES 157 AA IL+ VL+++ +S Sbjct: 121 AAVAILEHVLEQVRLGQS 138 >gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA3] gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL110PA4] Length = 160 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133 Query: 140 AAALILQEVLDRISF--LESSKG 160 AA IL+ VL+++ LE++ G Sbjct: 134 AAVAILEHVLEQVRLGQLETATG 156 >gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus 16] gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus 16] Length = 136 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 2/132 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S D GTK IG AI A P ++ I ++GLP ++ Sbjct: 1 MSFDFGTKSIGSAIGQEVTGTASPLRAFKANDGIPNWDDIEKLIKEWQPDLLVVGLPTDL 60 Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G + + F + + R +P DERL+T A+ L +M + VD Sbjct: 61 HGRDLETITPRAKKFANRLHGR-YGLPVELHDERLSTTEARADLFNMGGYKALSKGNVDC 119 Query: 139 IAAALILQEVLD 150 +A +IL+ + Sbjct: 120 QSAVVILESWFE 131 >gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas] gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis str. Arkansas] Length = 156 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M +++ +K + + I +D G K+IG+A+SD A P VR+ + L Sbjct: 1 MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLY 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 S ++ + +IG PL ++G E F + +I R + DER +T A + Sbjct: 61 SIFVENDVGSIVIGWPLELSGVENELCQKVVMFANRIITR-YKINICLHDERYSTAMATR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 + N+ RK+ D I+A LILQ+VLD I + Sbjct: 120 LAKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQ 155 >gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans DMS010] gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans DMS010] Length = 125 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86 K IG+A+ A+P + + ++ + I+GLPLNM+G+E Sbjct: 2 KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61 Query: 87 VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVDSIAAAL 143 + R F + + R +P + DERLTT A L M + K ++ VD ++A L Sbjct: 62 TAAARRFGNRLHGR-FNIPVEWQDERLTTYEA---LDQMGIRSKMDTRQRSDVDQLSAQL 117 Query: 144 ILQEVLDR 151 ILQ L++ Sbjct: 118 ILQSWLNQ 125 >gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium psychrophilum JIP02/86] gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum JIP02/86] Length = 137 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID G KR G+AI+D + A + + L + T E + +IG P Sbjct: 3 RILAIDYGQKRTGIAITDEMQIIASGLTTIASETSIAF---LRDYFTKEKVEKVLIGEPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 MNG FV + + DER T+ A Q +ID + +K+R K Sbjct: 60 QMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119 Query: 136 VDSIAAALILQEVLDR 151 VD I+A ++LQ+ L R Sbjct: 120 VDEISATIMLQDYLTR 135 >gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] Length = 178 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 6/147 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLN 78 +D+G R+G A+SDP A P L R + +L I + +GLP Sbjct: 1 MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 60 Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 M G + P R + + + K ++ DERLTTVSA + L + VS + Sbjct: 61 MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 120 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + +S G Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQSVAG 147 >gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827] gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827] Length = 170 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75 +D+G R+G+A+SDPG A P L R +K + +L+ ++ ++GL Sbjct: 15 GRRLGVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGL 74 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + G GP + A+ + +R +P DERLTTV+A ++L V KK+ Sbjct: 75 PRTLAGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAV 134 Query: 136 VDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 135 VDQAAAVEILQSWLD 149 >gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 142 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID GTKR G+A SD G A PR +V + ELL+ E A+++GLPL Sbjct: 4 LGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G++ R FV + R+ +P +E L++ A+ L D +S + VD Sbjct: 64 DGTDTLTTRQVRNFVERL-KRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVDQQ 122 Query: 140 AAALILQEVLD 150 AA ILQ L+ Sbjct: 123 AAVRILQSFLN 133 >gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii ATCC 12478] Length = 141 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 54/126 (42%) Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87 RIG+A SDP A P + R + + L++ ++GLP + GP Sbjct: 2 RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61 Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147 + R P DERLTTVSAQ+ L + K++ +D AA ILQ Sbjct: 62 QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121 Query: 148 VLDRIS 153 LD+ Sbjct: 122 WLDQRR 127 >gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia mucilaginosa DY-18] gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia mucilaginosa DY-18] Length = 187 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78 +D+G R+G A+SDP A P L R + L I + +GLP Sbjct: 10 MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 69 Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 M G + P R + + + K ++ DERLTTVSA + L + VS + Sbjct: 70 MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 129 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 VD +AA ILQ LD + +S G Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQSVAG 156 >gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279] gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279] Length = 142 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G R G+A+SD R A P L +V A + + GLP M Sbjct: 4 LALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G EGP+ R I R +P F DERL++ A++IL + +S K+ KVD I Sbjct: 64 AGEEGPQAARVREVAGR-ISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMI 122 Query: 140 AAALILQEVLDRISFLE 156 +A+L LQ LD S E Sbjct: 123 SASLFLQAWLDAQSRKE 139 >gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1] gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1] Length = 153 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 3/136 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ID+G R+G+A SDP A P + R + +L ++G Sbjct: 2 RTGTRLGIDVGKVRVGVARSDPHGMIATPVETVQRASSS--IKRILLLAVEFEAVELVVG 59 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP+ ++G + P RAF + D + DER+TT+SAQ L + K Sbjct: 60 LPIALSGRDTPSTADARAFAQELADGS-DITVRLVDERMTTMSAQSALRASGRTTKNSRS 118 Query: 135 KVDSIAAALILQEVLD 150 VD +AA +ILQ LD Sbjct: 119 VVDQVAAVIILQHALD 134 >gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum PRL2010] gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum PRL2010] gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 152 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP FAHP + + ++++ I E + ++GLPL Sbjct: 4 LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126 ++G+EG R + N+ R + DERLTTVSA + L++ Sbjct: 64 LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 + ++ VD +A +ILQ LD Sbjct: 124 LGSRRHRPVVDQQSAVVILQTALD 147 >gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96] gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96] Length = 151 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 D GTK+IG A+ A P + + I A ++G+ Sbjct: 13 TYLGFDFGTKKIGTAVGQTTTATASPLQTIRSINQNPNWEIIGKLIQEWRPAGLVVGISK 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136 +GS+ P F + + + +P DE L+T A+Q+L +++VS K + Sbjct: 73 QADGSDNPVTPRMLKFCRQL-EGRYQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQ 131 Query: 137 DSIAAALILQEVLDRISFL 155 D +AA LILQ L+ + + Sbjct: 132 DQLAAQLILQTWLNEHAHI 150 >gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis ATCC 25486] gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis ATCC 25486] Length = 135 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 54/127 (42%) Query: 34 SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93 DP A P + + V L + ++GLP +++G EGP R+F Sbjct: 2 CDPDGLLATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLSGREGPAAKKIRSF 61 Query: 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + VP DER+TTV+A Q L V KK +D AA +ILQ L+ Sbjct: 62 AQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSKKGRSVIDQAAAVVILQNALESER 121 Query: 154 FLESSKG 160 ++ G Sbjct: 122 ASGNAPG 128 >gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469] gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469] Length = 140 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIG+A+SDP A P L ++V A + + + G P Sbjct: 2 RVLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + G +GP+ + +P F DERL++ A++IL +S K KVD Sbjct: 62 TLAGEDGPQAQKITVQAEQIAK-NCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKVD 120 Query: 138 SIAAALILQEVLD 150 +AA+L LQ LD Sbjct: 121 MVAASLFLQSWLD 133 >gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 161 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 2/142 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 ++D+G RIGLA SDP A P + R + +L+ T + A ++GLPL Sbjct: 7 LAVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLA 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G F + D +P DERL+TVSAQ L +K+ +D Sbjct: 67 LSGRATASTDDAEGFARRLADA-TEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125 Query: 139 IAAALILQEVLDRISFLESSKG 160 +AA +ILQ L+ S G Sbjct: 126 VAAVIILQHALETERAAGSPPG 147 >gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM 15272] gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM 15272] Length = 149 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 D+G RIG+A+ DP A P + LL + + ++GLPL+++G Sbjct: 2 DVGDVRIGVAMCDPDGMIATPVETVPA--GPAAHARLLQIASEIEVVEIVVGLPLSLSGR 59 Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142 EGP RAFV + P DERL+TV+A L D + + + +D AA Sbjct: 60 EGPAAGKVRAFVQVLA-AMSDRPVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQAAAV 118 Query: 143 LILQEVLDRISFLESSKG 160 +ILQ LD + G Sbjct: 119 VILQNALDAERTRGHAPG 136 >gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str. F0310] Length = 162 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 1/149 (0%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 SL+ I +D+GT R+G++ DP P L+R + L + + Sbjct: 2 SLRRGVRI-GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEV 60 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 I+GLP ++ G EG R + + V DERL++ A L V + Sbjct: 61 IVGLPRHLRGGEGVSAKGARKYARRLKTLIPSVRVALVDERLSSNQAHARLRASGVPEHE 120 Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160 +D +AA +IL++ L+ + G Sbjct: 121 HRSVIDQVAAQIILEQALELERMSGRAPG 149 >gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100] gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100] Length = 135 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID GTKR G+A++DP + A + ++ L + E++ AF++G P N+ Sbjct: 1 MAIDYGTKRTGIAVTDPLQIIASGLDTVPTTELMNF---LRQYCQEEDVEAFVVGEPKNL 57 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137 + + H AFV + + + DER T+ A + + SRKKR K VD Sbjct: 58 DDTPAQIHHLVMAFVAQIENLFPDKRVILRDERFTSKDATRSIRQSVPSRKKRRDKGLVD 117 Query: 138 SIAAALILQEVLDRISF 154 ++A +ILQE L++ + Sbjct: 118 KVSAVIILQEYLEKYKY 134 >gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139] gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139] Length = 147 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + L + I+GLP+ + Sbjct: 3 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L + + +K+ +D Sbjct: 61 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120 Query: 140 AAALILQEVLDRISF--LESSKG 160 AA IL+ VL+++ LE++ G Sbjct: 121 AAVAILEHVLEQVRLGQLETATG 143 >gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT 12066] gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT 12066] Length = 140 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D G IG+A+ + A P + + A ++ + + ++G P+ Sbjct: 2 SVLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKV 136 NM+G++ R F + + D+ + F DERLTT A ++I K+ Sbjct: 62 NMDGTKEELTFKARKFGNRLADK-FKLKVYFKDERLTTADAKERIFSQYGYKGLASKGKI 120 Query: 137 DSIAAALILQEVLDRIS 153 D ++AALIL+ + + Sbjct: 121 DCVSAALILEAFFEEKA 137 >gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis SK2] gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax borkumensis SK2] Length = 133 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT++IG+A + A P L K ++ + + A ++GLPLN Sbjct: 2 ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+GS+ R F + + R DERL+T A++ KK +VDS Sbjct: 62 MDGSDSESTVRARKFANRLHGR-FGKKVWLIDERLSTREARER-----TGIKKADSRVDS 115 Query: 139 IAAALILQEVL 149 +AA +I + Sbjct: 116 MAAVIIAEGFF 126 >gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1] gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1] Length = 138 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G R+G+A+SDPG R A P L +V A + + GLP Sbjct: 2 RIMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M G+EGP+ R + D +P+ F DERL++ A++ L + ++ K K+D Sbjct: 62 TMAGAEGPQAARIRKVAKTISDA-CGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKID 120 Query: 138 SIAAALILQEVLD 150 IAA+L LQ LD Sbjct: 121 MIAASLFLQAWLD 133 >gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 167 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 6/146 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68 ID+G R+G+A+SDP A P + R + L+ T + Sbjct: 14 PGRGRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEV 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNV 127 ++G+PL ++GS G + R V + DER+TTV AQ L + Sbjct: 74 VEIVVGMPLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYADERMTTVMAQSRLHAAGI 133 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 K + +D AA ILQ LDR + Sbjct: 134 DVKSGRKIIDQAAAVEILQSWLDRRA 159 >gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM 5692] gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM 5692] Length = 142 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 ID G KR+GLA+SD P + R ELL++I T I A +IGLP Sbjct: 2 RYLGIDFGLKRVGLALSDSQATVVTPLATVQRSTRQALFEELLAYIETYAIEAVVIGLPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++ G+ R F ++ R++ +P + DE LT+ A + L + V R KR +D Sbjct: 62 DLEGTATLTTRQARNFGTSLA-RRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLD 120 Query: 138 SIAAALILQEVL 149 AA IL+ L Sbjct: 121 QHAAVAILESFL 132 >gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM 20707] gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM 20707] Length = 141 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 6/144 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR GLA++DP + + Q L ++ E + ++G Sbjct: 1 MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIVLGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P M+ + + +A + + + DER T+V AQQ + + + +++R Sbjct: 58 PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117 Query: 133 IQKVDSIAAALILQEVLDRISFLE 156 VD ++A +ILQ L+ +S L Sbjct: 118 KGLVDRVSATIILQSYLESLSMLH 141 >gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str. Welgevonden] Length = 156 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I + + + + I +D G K+IG+A+SD A P VRK + L Sbjct: 1 MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLY 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLPL++ G F + MI + + DER +T A + Sbjct: 61 GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKK-YAINIYLHDERYSTAMATR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 + N+ RK+ + D IAA LILQ+VLD + + Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155 >gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00] gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Lawsonia intracellularis PHE/MN1-00] Length = 142 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID GTK G+A+SD FA P+ ++ + ++L+ I E+ A ++GLP+ Sbjct: 4 VAIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLF 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE R F+ + + + +P E L++ A+ L + + K +D Sbjct: 64 DNSETLITRQVRNFIKRLKHKIM-LPVFLMKEILSSYEAKLDLQSVGYRKNKIKSVLDQQ 122 Query: 140 AAALILQEVLDR 151 AA ILQ LD+ Sbjct: 123 AAVRILQSFLDQ 134 >gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S] gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC 33707] gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S] gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC 33707] Length = 150 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIAAFIIGLPLNMNGSE 83 RIG+A DP A P + R K +++ + I+GLP + G Sbjct: 2 RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 G AF + VP DERLTTV+A + L + V K + +D AA Sbjct: 62 GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121 Query: 144 ILQEVLDRIS 153 ILQ LD S Sbjct: 122 ILQGWLDERS 131 >gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans ASO3-1] gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans ASO3-1] Length = 140 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G KR+GLA+SD + P + R LELL+ I I A ++GLPL Sbjct: 4 LGIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGP 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G + F+ ++ DR+ +P +E T++ A+ IL + +K+ + +D Sbjct: 64 DGEKSLTCRQAENFMQSL-DRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLDQA 122 Query: 140 AAALILQEVLDRISFLE 156 AA +IL+ L I E Sbjct: 123 AAVIILESFLAGIPLRE 139 >gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM 20098] gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM 20098] Length = 154 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 13/152 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLP 76 IDLG R+GLA+SDP FAHP + V + +++ I EN+ ++GLP Sbjct: 2 TWLGIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILID 124 L ++G EG R + N+ R VP DERLTTVSA + L Sbjct: 62 LLLSGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLRQ 121 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 N++ + VD +A +ILQ LD+ + E Sbjct: 122 ANIAERGHRPVVDQQSAVVILQAALDKRNSRE 153 >gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 135 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID GTKR G+A++D + A + + T+ L + E + I+GLP Sbjct: 2 RILAIDYGTKRCGIAVTDELKLIASALATV---ETTELLDFLEKYCQAEQVERIIVGLPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135 ++G + F+ + ++ +P +DER T+ A IL+ +KKR Sbjct: 59 QVSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKAL 118 Query: 136 VDSIAAALILQEVLDRI 152 +D I+A LILQ+ L + Sbjct: 119 LDRISATLILQDYLSSL 135 >gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa NIES-843] gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa NIES-843] Length = 145 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G KR+G+A D A ++R + + + NI + GLP M Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G G + + + + + +P + DER T++ A++ L +D Sbjct: 67 AGELGFQAQQVQKYAQKLA-IALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125 Query: 140 AAALILQEVLDRIS 153 AAA+ILQ+ LDR Sbjct: 126 AAAIILQQWLDRRR 139 >gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D] gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D] Length = 143 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + + + + D G KRIG+A+ + R A + + V ++ + F+ Sbjct: 12 MPADGTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFV 71 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G+P++ +G E P + + F + + R +P + DER ++++AQ D S Sbjct: 72 VGMPVHPDGEEQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAS---- 122 Query: 133 IQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 DDVLDAEAARIILQQFFDE 141 >gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5] gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5] Length = 136 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR G+A++D + A + K + L +++ E + A +IG Sbjct: 1 MARIIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTF---LKKYLSEEKVEAMVIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN F ++ + + + DER T+ A Q ++D + +KKR K Sbjct: 58 PKRMNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNK 117 Query: 136 --VDSIAAALILQEVL 149 VD I+A +ILQ+ L Sbjct: 118 ALVDQISATIILQDYL 133 >gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489] gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489] Length = 136 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID G R G+A++D + A + K++ L +I E + I+G Sbjct: 1 MGRLLAIDFGKVRTGIAVTDELQIIASGLTTVATKELITF---LKDYIAKEKVDKIIVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN + F+ + + DER T+ A + +ID +++KKR K Sbjct: 58 PKQMNNTASESEVLIVPFLEKLTAVFPNMIIEREDERFTSKMAFKTMIDSGLNKKKRKNK 117 Query: 136 --VDSIAAALILQEVLDR 151 VD I+A +ILQ L R Sbjct: 118 ALVDEISATIILQSYLSR 135 >gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16] gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16] Length = 153 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 66/135 (48%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +D+G R+G+A + A P L + EL SFI E A +GL Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +NG EG R++ + + +P DERL++V+A + L VS ++ + Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122 Query: 136 VDSIAAALILQEVLD 150 VD +AA IL++ L+ Sbjct: 123 VDQVAAQQILEQALE 137 >gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053] gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053] Length = 137 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID G KR G+A++DP + A + ++T L + +E + AF++G+P Sbjct: 3 RLLAIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDF---LKKYTLSEQVEAFVVGMPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 ++ ++ AFV ++ + DER T+ A Q +I + R K Sbjct: 60 KLDNTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGN 119 Query: 136 VDSIAAALILQEVLDRIS 153 +D ++A +ILQ ++ Sbjct: 120 IDKVSATIILQSFMESRR 137 >gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333] gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333] Length = 152 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 69/141 (48%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M Sbjct: 7 LAIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLPKLM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG R++ ++ R +P DERL++ A L + V +++ + VD + Sbjct: 67 SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMVDQL 126 Query: 140 AAALILQEVLDRISFLESSKG 160 AA IL L+ ++ + G Sbjct: 127 AAVTILTRALETLTQTGNLPG 147 >gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24] gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24] Length = 199 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D+GT R+G+A+ D A P L R T + +L+ + +GLP Sbjct: 16 LGVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFVGLPRT 75 Query: 79 MNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 + G E + + + R +P DERL+TV+A + L + +S + + Sbjct: 76 LKGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSSRNHRK 135 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 VD +AAA ILQ +D ++ ++G Sbjct: 136 VVDQVAAAGILQHAID----MQKARG 157 >gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR5-3] gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR5-3] Length = 142 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D G +IG+A+ + P L + E+ ++G PL Sbjct: 9 RVLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPL 68 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+ R F + + ++ + DERL++ +Q + R VD Sbjct: 69 NMDGTVSEFAQRARKFARRL-EGRLGLSVEMVDERLSSFEVKQQQKEAGHRGDYREHPVD 127 Query: 138 SIAAALILQEVL 149 +AA LIL++ L Sbjct: 128 DLAAELILRDWL 139 >gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35239] gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35239] Length = 153 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 66/135 (48%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +D+G R+G+A + A P L + EL SFI E A +GL Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +NG EG R++ + + +P DERL++V+A + L VS ++ + Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122 Query: 136 VDSIAAALILQEVLD 150 VD +AA IL++ L+ Sbjct: 123 VDQVAAQQILEQALE 137 >gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM 13965] gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM 13965] Length = 330 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG++ IG+AISDP A P L R+ + ++ ++G P Sbjct: 2 RWLGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++G GP + AF + V WDERL+TV A+++LID ++SR++R +D Sbjct: 62 RLDGRRGPEAEAAEAFAAGLQAAGVSR-VTLWDERLSTVQAERVLIDADLSRRRRKAIID 120 Query: 138 SIAAALILQEVLDRISFLESSKG 160 +AA +ILQ L+ ++ G Sbjct: 121 RMAATVILQAFLEAQRRQRATGG 143 >gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter haemolyticus ATCC 19194] gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter haemolyticus ATCC 19194] Length = 147 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P Q I + D GT+++G+AI A+P P K +LL + FI Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFI 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+ SE R F + + + DERLTT A++ L + + Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQ-TNISTWMVDERLTTREAREELEFYQSKGQAK 122 Query: 133 IQKVDSIAAALILQEV 148 DS AAAL++Q Sbjct: 123 RLSADSFAAALLIQSW 138 >gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum ATCC 700975] gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium aurimucosum ATCC 700975] gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum ATCC 700975] Length = 182 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 13/152 (8%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-----TQTALELLSFITTENIA 69 P + +D+GT RIG+A+SD R A P + R+ LL I + Sbjct: 15 PGRR-LGLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDAV 73 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-------YVPFVFWDERLTTVSAQQIL 122 +GLP ++ G+ V + + R P DERLTTV A L Sbjct: 74 EVAVGLPRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSAL 133 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 VS K+ +D AA ILQ LD F Sbjct: 134 RASGVSEKRGRSVIDQAAAVEILQSWLDARHF 165 >gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM 44963] gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM 44963] Length = 162 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 16/150 (10%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74 + ++D+G RIG+A D A P + V + QT + I + +IG Sbjct: 3 MGRLLALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIG 62 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++++G + AFV + + VP FWDERL+TV A+++ + K Sbjct: 63 LPVSLDGQIHAQGERIMAFVERL-KAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTG 121 Query: 135 --------------KVDSIAAALILQEVLD 150 ++D++AAA+ LQE LD Sbjct: 122 GRQHSQGKRRRPGHEIDALAAAVFLQEYLD 151 >gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str. CTCB07] gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 155 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 1/141 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID+GT RIG++ SD A P + R + +T + I+GLPL + Sbjct: 7 LGIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLAL 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G AF ++ V P DERL+TVSA L + K VD Sbjct: 67 SGVHTASTADAVAFAEALVVE-VGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQA 125 Query: 140 AAALILQEVLDRISFLESSKG 160 AA +ILQ LD G Sbjct: 126 AATIILQHALDAERATSRPPG 146 >gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 143 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 6/145 (4%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P I +ID GTKR GLA++D + + Q L ++ E + ++G Sbjct: 2 PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTH---QLLNYLADYLGREEVETIVLG 58 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV---SRKK 131 P M+ + + +A + + + DER T+V AQQ + + + R++ Sbjct: 59 KPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRRQ 118 Query: 132 RIQKVDSIAAALILQEVLDRISFLE 156 VD ++A +ILQ L+ + L Sbjct: 119 DKGLVDRVSATIILQSYLESLRMLH 143 >gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia thailandensis MSMB43] Length = 146 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + +L + + + D G KRIG+AI + R A + + I Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++GLPL+ +G+ + F + + + + +P + DER ++V + Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAKRFGNQL-NGRFNLPVSWVDERYSSVE----ARAGLRA 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157 R +VD+ AA +ILQ+ LD + Sbjct: 116 RGAAADRVDAEAARVILQQYLDGLPDHHE 144 >gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus HTCC2559] gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus HTCC2559] Length = 135 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G+A++D + A + + L + E + +IG Sbjct: 1 MARILAIDYGAKRTGIAVTDELKLIASGLTTVRTHDLESF---LKDYFEKEKVELVLIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++G+ F++ + F DER T+ A Q +ID + +K+R K Sbjct: 58 PKQVDGTHSENEERIIHFINRFKKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNK 117 Query: 136 --VDSIAAALILQEVL 149 VD I+A +ILQ L Sbjct: 118 ALVDEISATIILQTYL 133 >gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252] gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252] Length = 145 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D GT+R+GLA++DP R A P + Q L + E I +IG PL Sbjct: 4 RVVAVDYGTRRVGLALADPLRVIAQPYGTYAPEAALQVLQRLHA---EEGIETLVIGWPL 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135 G+EG F+ + V V WDER T+ A++ L ++ RKKR + Sbjct: 61 TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120 Query: 136 VDSIAAALILQEVLDR 151 +D +AA +ILQE L++ Sbjct: 121 IDQMAAVIILQEYLEQ 136 >gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS] gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 142 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 S ++ I ID GTKRIG+A+SDP R FA P + + + + E I Sbjct: 2 SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRD---DEGIELV 58 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G P++ G E FV + + +DE ++ +A +IL SRKK Sbjct: 59 VVGYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKK 118 Query: 132 R--IQKVDSIAAALILQEVLDRIS 153 R ++D+ AA LILQ LD S Sbjct: 119 RNEKGRLDTAAACLILQGYLDSHS 142 >gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon 178 str. F0338] Length = 156 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 59/141 (41%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+GT R+G+A +DP + P L R EL + + + ++GLP ++ Sbjct: 3 IGVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHL 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G EG R + + V DERL++ A Q L V +D + Sbjct: 63 KGGEGVSAKGARRYARRVKVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVIDQV 122 Query: 140 AAALILQEVLDRISFLESSKG 160 AA +I++ LD + G Sbjct: 123 AAQIIIEHALDTERISGRAPG 143 >gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244] gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244] Length = 147 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P Q I + D GT+++G+AI A+P P K +LL + FI Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFI 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+ SE R F + + + DERLTT A++ L + + Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQ-TNITTWMVDERLTTREAREELEFYQSKGQAK 122 Query: 133 IQKVDSIAAALILQEV 148 DS AAAL++Q Sbjct: 123 RLSADSFAAALLIQSW 138 >gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 155 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L Sbjct: 1 MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +IGLPL M+ E + F + +I + V DE +T A Sbjct: 61 RIFKENESGSMVIGLPLKMDEQETKWCKTIIQFANKIIKK-YKVNIYLQDESFSTSIATH 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 L +S K + D I+A +ILQ LD+I+ ++ Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155 >gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold, yqgF family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 155 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M + +KS+ ++ I +D+G K+IG+A SD + A RK +++ L Sbjct: 1 MLYRDPYEFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLN 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +IGLPL ++G + + F + MI + V DE L+T A Sbjct: 61 RIFKKNEAGSIVIGLPLEIDGQKSEWCKTIIKFANKMIKK-YKVSTYLQDESLSTSIAAH 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 L VS K + D I+A +ILQ LD+I+ ++ Sbjct: 120 TLKISGVSTTKSKRIDDKISACIILQRTLDKINVIK 155 >gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str. Gardel] gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str. Gardel] Length = 156 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I + + + + I +D G K+IG+A+SD A P VRK + L Sbjct: 1 MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLY 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + + +IGLPL++ G F + MI + + DER +T A + Sbjct: 61 GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKK-YAINIYLHDERYSTAMATR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 + N+ RK+ + D IAA LILQ+VLD + + Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155 >gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6] gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6] Length = 207 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73 P +D+GT R+G+AI D A P L R + + L++ + E I+ Sbjct: 20 PQGVKLGVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIV 79 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129 G+P M G E + + VP DERL++VSA + L + +S Sbjct: 80 GMPRTMKGEEHASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSS 139 Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160 + + VD +AAA ILQ +D + G Sbjct: 140 RNHRKVVDQVAAAGILQHAIDMQKARGADVG 170 >gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122] gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122] Length = 171 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 ++D+G RIG+AISDP R A P L +V A + A + GLP Sbjct: 20 RYMALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPF 79 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + G +GP+ S + + +P F DERL++ A++ L + + KVD Sbjct: 80 TLAGEQGPQAASLKERAQRIAKA-CDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVD 138 Query: 138 SIAAALILQEVLDR 151 IAA++ LQ LD Sbjct: 139 MIAASIFLQSWLDS 152 >gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM 15176] gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM 15176] Length = 156 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 ++D G R GLA D P + K + + A + + GLP N Sbjct: 4 LAVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGLPKN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+EG R +R F + + P V WDER TTVSA IL D + +KR ++DS Sbjct: 64 MDGTEGSRAAKSRRFAQRLAN-TAGRPVVLWDERRTTVSATAILADNDTFGQKRKARLDS 122 Query: 139 IAAALILQEVLD 150 ++AA+IL+ L+ Sbjct: 123 VSAAVILESFLN 134 >gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505] gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505] Length = 171 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +P I + D+G RIG+A D + P L R + E + + I Sbjct: 13 FRPGVRI-AFDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVI 71 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKK 131 +GLP +M G R + ++ R V DERLTTVSA + L + + Sbjct: 72 VGLPKHMGGGSSSSTRDARQWARDLASRLPQRVCVRLVDERLTTVSAHRDLHAAGLKERS 131 Query: 132 RIQKVDSIAAALILQEVL--DRISFLESSK 159 VD AA +IL++ + +R+S + + + Sbjct: 132 FRGIVDQAAAVVILEQAITTERMSGVPAGE 161 >gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM 14600] gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM 14600] Length = 147 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75 I ++D G K +G+A +D A + RK K+ +T + I ++GL Sbjct: 10 IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+NM+ SEG R R F + R + +DERL+T+ A +IL V KR + Sbjct: 70 PVNMDDSEGERAGMARDFADQVAQR-TGIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128 Query: 136 VDSIAAALILQEVLDRIS 153 +D ++A LIL+ L+ + Sbjct: 129 LDELSAQLILERYLEDLR 146 >gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium diphtheriae NCTC 13129] gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 183 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 11/155 (7%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 +D+GT RIGLA+SD G R A P L R+ Q + I +I Sbjct: 25 PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 84 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILI 123 ++GLP ++ G+ V + + R +V DERLTTV A Q L Sbjct: 85 VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 144 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157 VS KK + VD AA ILQ LD RI+ LE+ Sbjct: 145 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLEN 179 >gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032] gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032] Length = 152 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73 +D+G RIG++ SDP A P + R+ V + +E+ + + ++ Sbjct: 10 LGVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALVVEHEAVEVVV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+N+ G GP +A+ + + VP DER++TV A + L + V KK+ Sbjct: 70 GLPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLAERGVRGKKQR 129 Query: 134 QKVDSIAAALILQEVLD 150 VD AA ILQ LD Sbjct: 130 AVVDQAAAVEILQSWLD 146 >gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium accolens ATCC 49726] gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium accolens ATCC 49726] Length = 183 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 14/158 (8%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 ++D+GT RIG+A S+ A P + RK + + +L I + Sbjct: 14 PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSA 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120 I+GLP +++G+ V + + R KV P DERLTTV+A Sbjct: 74 VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 133 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157 L VS KK + +D AA ILQ LD R + L S Sbjct: 134 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRS 171 >gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243] gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA] gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243] gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA] Length = 138 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G R+G+A+SDPG R A P L +V A + + GLP Sbjct: 2 RIMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M G+EGP+ R I +P+ F DERL++ A++ L + ++ K K+D Sbjct: 62 TMAGAEGPQAARIRK-AAKTISDACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKID 120 Query: 138 SIAAALILQEVLD 150 IAA+L LQ LD Sbjct: 121 MIAASLFLQAWLD 133 >gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245] gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245] Length = 142 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 SL + I +ID GTKRIG A SDP + FA P + R + +L E I Sbjct: 2 SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRA---ELFEKLEQMARNEEIDKI 58 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK- 130 ++G PLN +G++ F+ + +P DE ++ A QIL +SRK Sbjct: 59 LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118 Query: 131 -KRIQKVDSIAAALILQEVLD 150 R ++D AA +IL+E LD Sbjct: 119 RNRKGRLDCAAACVILREYLD 139 >gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1] gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1] gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD] Length = 137 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73 + I ++DLG+K G AISD R + P K K+ +L + I +I Sbjct: 1 MKRIIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLI 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G PL+M ++ FV N+ +P DER TT A I+I+ +SR+KR Sbjct: 61 GYPLSMQLNQTKSSKRVDYFV-NLFKTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRK 119 Query: 134 QKVDSIAAALILQEVLDR 151 + D +AA LIL + L++ Sbjct: 120 KNKDKLAAQLILDDYLNQ 137 >gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str. Hildenborough] gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4] gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4] gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1] Length = 142 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G +R G+A++D G R A PR + +ELL + E AF++GLP Sbjct: 4 LGIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLP 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G E R FV + R+ +P F E L++ A+ L D + ++ VD Sbjct: 64 GGEETLTTRQVRNFVERL-KRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVDQQ 122 Query: 140 AAALILQEVL 149 AA IL+ L Sbjct: 123 AAVRILESFL 132 >gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp. JA-3-3Ab] gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. JA-3-3Ab] Length = 159 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G +RIG+A SD A + R+ + + ++ ++I ++G+PL Sbjct: 17 LGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLA 76 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + + FV + V +P V +E L+TV A+ L + K + +D Sbjct: 77 DGSVGSQARKVQRFVRAL-QAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQ 135 Query: 140 AAALILQEVLDRISFLESSK 159 +AA+ILQ LD + +SSK Sbjct: 136 SAAVILQTWLDERRYSQSSK 155 >gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 142 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 75/134 (55%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +D+G ++IG+A+SD A P+ + K + + ++L I +I ++GL Sbjct: 1 MERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++NG +G + T++FV + + + ++ DER T+ A + L M++ + K + Sbjct: 61 PKDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKEL 120 Query: 136 VDSIAAALILQEVL 149 +DS+AAA IL+ L Sbjct: 121 IDSLAAASILETYL 134 >gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica PR426713P-I] gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica PR426713P-I] Length = 141 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 6/144 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR GLA++DP + + Q L ++ E + I+G Sbjct: 1 MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIILGK 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132 P M+ + + +A + + + DER T+V AQQ + + + +++R Sbjct: 58 PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117 Query: 133 IQKVDSIAAALILQEVLDRISFLE 156 VD ++A +ILQ L+ +S L Sbjct: 118 KGLVDRVSATIILQSYLESLSMLH 141 >gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232] gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232] gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 143 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++DLG K G AISD + ++P R + ++ I+ ++G Sbjct: 6 RILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGY 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL + G PR F +++ + + VF DERLTT AQ L+D+ +S KKR + Sbjct: 66 PLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKV 124 Query: 136 VDSIAAALILQEVLD 150 +D +AA +IL+ L+ Sbjct: 125 IDKLAAQIILERFLN 139 >gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588] gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588] Length = 136 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA++DP + A + + L ++ E + F+IG Sbjct: 1 MARILAIDYGKKRTGLAVTDPLQLIASGLTTVATHDLIPY---LKKYLAQEAVELFLIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P N++G + + VP DER T+ A Q +ID + +K R Sbjct: 58 PKNLDGGATHATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKKDRQNK 117 Query: 134 QKVDSIAAALILQEVL 149 VD I+A +ILQE L Sbjct: 118 GLVDEISATIILQEYL 133 >gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM 13280] gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM 13280] Length = 142 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G R G+A+SD R A P L +V A + + GLP M Sbjct: 4 LALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EGP+ R + +P F DERLT+ A++IL + ++ K+ KVD I Sbjct: 64 SGEEGPQAEHIREVAGRIA-AATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMI 122 Query: 140 AAALILQEVLDR 151 +A+L LQ LD Sbjct: 123 SASLFLQAWLDS 134 >gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis NRRL B-59395] gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis NRRL B-59395] Length = 142 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 66/138 (47%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++P +ID+G+ R+G+A+ DP A P + R K ++ IT + + Sbjct: 2 IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IGLP + G EGP V + R F + V F+DERLTTV+A L V K Sbjct: 62 IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121 Query: 133 IQKVDSIAAALILQEVLD 150 +D AA ILQ LD Sbjct: 122 RAVIDQAAAVAILQGWLD 139 >gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC 43063] gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC 43063] gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 152 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 68/141 (48%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M Sbjct: 7 LAIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLPKLM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG R++ ++ R +P DERL++ A L V +++ + VD + Sbjct: 67 SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQL 126 Query: 140 AAALILQEVLDRISFLESSKG 160 AA IL L+ ++ + G Sbjct: 127 AAVTILTRALETLTQTGNLPG 147 >gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda SM-A87] gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda SM-A87] Length = 134 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D G KR G+A++D + A + + L + E + ++G Sbjct: 1 MARVMALDYGVKRTGIAVTDELQMIASGLTTVDTSSLLNF---LEDYFKKEKVETVVVGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + S F+ ++ + V DER T+ A Q +ID + +KKR K Sbjct: 58 PKQKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNK 117 Query: 136 --VDSIAAALILQEVL 149 VD ++A +ILQ L Sbjct: 118 ALVDEVSATIILQSYL 133 >gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium accolens ATCC 49725] gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium accolens ATCC 49725] Length = 173 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 14/158 (8%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 ++D+GT RIG+A S+ A P + RK + + +L I Sbjct: 4 PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTA 63 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120 I+GLP +++G+ V + + R KV P DERLTTV+A Sbjct: 64 VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 123 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157 L VS KK + +D AA ILQ LD R + L S Sbjct: 124 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRS 161 >gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii A2-165] gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii A2-165] Length = 143 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76 I ++D G R GLA+ DP P + K + A E+ + ++GLP Sbjct: 2 KILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+EG R +R + +P WDER +T A IL ++ R + Sbjct: 62 LNMDGTEGERAEKSRKLGKTL-QIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAIL 120 Query: 137 DSIAAALILQEVL 149 DS++A +IL++ L Sbjct: 121 DSVSATVILEDYL 133 >gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705] gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F] gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705] gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 145 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 G R+GLA+SDP FAHP + E+L+ I E++ I+GLPL M+G+E Sbjct: 2 GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61 Query: 84 GPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMNVSRKK 131 G R + N+ R + +P DERLTTVSA + L + + + K Sbjct: 62 GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 VD +A +ILQ LDR Sbjct: 122 HRPVVDQQSAVVILQTALDRTR 143 >gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella blandensis MED217] gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella blandensis MED217] Length = 134 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D GTKR G+A++D + A + + L + EN+ ++G Sbjct: 1 MGRILALDFGTKRTGIAVTDELQLIASGLTTV---NTKELLDFLKKYFAEENVELILLGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P MN F ++ ++ +P DER T+ A Q ++D + +K+R K Sbjct: 58 PKRMNNEASHVEAEILKFRESL-EKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKNK 116 Query: 136 --VDSIAAALILQEVL 149 +D I+A +ILQ L Sbjct: 117 ALLDEISATIILQTYL 132 >gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC 17982] gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC 17982] Length = 162 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 57/141 (40%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+GT R+G++ DP P L R L + + + I+GLP ++ Sbjct: 9 IGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHL 68 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G EG R + + V DER+T+ A L + + +D + Sbjct: 69 RGGEGISAKGARKYARRLKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVIDQV 128 Query: 140 AAALILQEVLDRISFLESSKG 160 AA +IL++ L+ + G Sbjct: 129 AAQIILEQALELERMGGRAPG 149 >gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 144 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 G R+GLA+SDP FAHP + E+L+ I E++ I+GLPL M+G+E Sbjct: 2 GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61 Query: 84 GPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMNVSRKK 131 G R + N+ R + +P DERLTTVSA + L + + + K Sbjct: 62 GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 VD +A +ILQ LDR Sbjct: 122 HRPVVDQQSAVVILQTALDRTR 143 >gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes DSM 20306] gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes DSM 20306] Length = 175 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 19/155 (12%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 + +D+GT RIG+A+SD R A P + R+ +LL+ I+ I Sbjct: 14 PGSGRRLGLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAI 73 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-------------VFWDERLTT 115 ++GLP ++ G+ V + + R++ PF DERLTT Sbjct: 74 VEIVVGLPRDLQGNGSASVKHAKEIAFRL-KRRLNKPFAPDPTPPHPVPVVRMGDERLTT 132 Query: 116 VSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 V+A L VS KK +D AA ILQ LD Sbjct: 133 VAATTALRASGVSEKKGRAVIDQAAAVEILQSWLD 167 >gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom phytoplasma AYWB] gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom phytoplasma AYWB] Length = 151 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 3/142 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG K +G+A+S A + K Q L I+ I I+G P Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILGYPK 68 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MN G + + F + ++ V + WDERL+TV A QIL N + K +Q D Sbjct: 69 HMNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQMKD 128 Query: 138 SIAAALILQEVLDRISFLESSK 159 IAA++ILQ LD I + + Sbjct: 129 EIAASIILQNYLDYIKLHPNKE 150 >gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075] gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075] Length = 136 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G RIG+A+SD A P L R+ + + E ++GLPL+ Sbjct: 1 MALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLH- 59 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 N GP + + R++ +P F +E TT+ A + +++ ++SRK+R + VD + Sbjct: 60 NDQIGPEAQRVISLGRRL-QRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDKV 118 Query: 140 AAALILQEVLDRIS 153 AAALIL+ LD + Sbjct: 119 AAALILRRWLDGMR 132 >gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5] gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5] Length = 152 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D+G++R+G+A+SD RR A L R+ Q + +I + ++G+ Sbjct: 1 MGRILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGI 60 Query: 76 PLN-MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133 PL+ +GS P+ A + +R VP + DER +T + LI ++SRKKR Sbjct: 61 PLDSRDGSFTPKAMEIGAEARQLQER-FAVPVIGVDERFSTSKSNDFLIGVADLSRKKRK 119 Query: 134 QKVDSIAAALILQEVLD 150 + VD++AA ILQ LD Sbjct: 120 KVVDTMAAQNILQGYLD 136 >gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille] gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille] Length = 131 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 11/142 (7%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G KRIG+A+ + + A P + + + A I+GL Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + +G E R F + + R V V DER ++ V +R + Sbjct: 61 PRHPDGEEHEMTVRCRRFANQLHGR-FNVATVLVDERYSSA----------VISHQRGEL 109 Query: 136 VDSIAAALILQEVLDRISFLES 157 +D AAA+ILQ+ D + ES Sbjct: 110 IDDQAAAIILQQYFDDYTQSES 131 >gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 161 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 9/139 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D G RIG+A SDP A P + R K + + ++G P ++ Sbjct: 7 LAVDPGNARIGVAASDPSGMLASPVETIRRGKG--DTQRIALLVLERQAREVVVGYPASL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-------R 132 +G EGP S R F + VP DERLTTV+AQ L+ K R Sbjct: 65 SGEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAKGGRAR 124 Query: 133 IQKVDSIAAALILQEVLDR 151 +D AA ++LQ LD+ Sbjct: 125 RSVIDQAAATVLLQSALDQ 143 >gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396] gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Hahella chejuensis KCTC 2396] Length = 158 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + D G KR G A+ A P + + + + + A I+G Sbjct: 1 MATVVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGE 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+GS R F + R + DERLT+ A+ ++ + R Sbjct: 61 PLNMDGSVSEMALRARKFARRLHGR-YNLRVEMADERLTSSEAKSMVRERYGQRDFGRFA 119 Query: 136 VDSIAAALILQEVLD 150 VDSIAA I++ L+ Sbjct: 120 VDSIAAVFIVESWLE 134 >gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC 51599] gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC 51599] Length = 156 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 L + Q + + D G KRIG+A+ + A P L + + + + Sbjct: 3 LSAATSTVQTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQP 62 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-- 126 ++G PL+ +G+ F + + + +P DER ++V+AQ+ + D + Sbjct: 63 TGLVVGRPLHPDGTPHEVTALAERFARRL-EGRFGLPVFLVDERYSSVAAQERMRDEDDE 121 Query: 127 -------VSRKKRIQKVDSIAAALILQEVL 149 + Q D+ AAA+IL++ L Sbjct: 122 HVTRGGRRRKGGASQGDDATAAAIILEQYL 151 >gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W] Length = 151 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG K +G+A+S A + K + L I+ I ++G P Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLGYPK 68 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q D Sbjct: 69 HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKD 128 Query: 138 SIAAALILQEVLDRISFLESSK 159 IAA +ILQ LD I + + Sbjct: 129 EIAATIILQNYLDYIKLHPNKE 150 >gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297] gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297] Length = 142 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 D G IG+A A + + ++ + F++G+P NM Sbjct: 6 LGFDWGLGWIGVASGQTETYTASKLKPIRARDGIPNWTDIDQLVQEWRPTGFVVGIPYNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GSE V R F + + +P DERLTT A Q + + +K + +DS+ Sbjct: 66 DGSESQMVVRARKF-RKRLHGRFGLPAEEADERLTTREAWQHMNPASSLKKAKADDLDSV 124 Query: 140 AAALILQEVLDRIS 153 AA +ILQ L++ Sbjct: 125 AAQIILQSWLEQRR 138 >gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM 4136] Length = 151 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 4/135 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 ID GT RIGLA+SD AHP L + E+ + + + ++GLPL Sbjct: 2 RTLGIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVE--QEIAEIVRQKRVTTVVLGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQK 135 M+G G AF + + V F DERLT+V+A++ L ++ K++ + Sbjct: 60 RMDGHRGEAATRVEAFADRLSKALRHEVTVKFVDERLTSVAAERSLGLEGKQKTKEQKKL 119 Query: 136 VDSIAAALILQEVLD 150 VD +AA ILQ+ L+ Sbjct: 120 VDQVAAVAILQDYLN 134 >gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma citri] Length = 139 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G+K +GLA S + Q A L ITTE + I+G P NM Sbjct: 6 LAVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N + GPR FV N++ + + + DERLTT A QI+++ N+SR+KR QK D Sbjct: 66 NNTIGPRALMVSDFV-NLLKQLLDPTITIHLVDERLTTHQAHQIMLEANLSRQKRKQKKD 124 Query: 138 SIAAALILQEVL 149 S+AA LIL+ L Sbjct: 125 SLAAQLILETYL 136 >gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Rv] gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis CDC1551] gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis AF2122/97] gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Ra] gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis F11] gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Ra] gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis 02_1987] gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis 94_M4241A] gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis T92] gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis EAS054] gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis GM 1503] gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis T17] gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN 1435] gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis CPHL_A] gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis T46] gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis K85] gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis K85] gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85] gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85] gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis 210] gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis KZN 4207] gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis KZN R506] gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis SUMu001] gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis SUMu003] gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis SUMu005] gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis SUMu012] gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis KZN V2475] gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Ra] gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85] gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85] gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis SUMu001] gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis SUMu003] gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis SUMu005] gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis SUMu012] gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis CDC1551A] gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148] gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 170 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 54/138 (39%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ID+G RIG+A SDP A P + R + + L + I+ Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP + G + R P DERLTTVSAQ+ L V ++ Sbjct: 79 GLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQR 138 Query: 134 QKVDSIAAALILQEVLDR 151 +D AA ILQ LD Sbjct: 139 AVIDQAAAVAILQSWLDE 156 >gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL037PA2] gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL044PA1] gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes HL037PA3] Length = 160 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G RIG+A SD A P + + + L + I+GLP+ + Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETV--QTANRPMQRLAEIVAEYEPVEVIMGLPVAL 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 NG+E R + + +P + DER+TT +A + L D + +++ +D Sbjct: 74 NGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQA 133 Query: 140 AAALILQEVLDRIS 153 AA IL++VL+++ Sbjct: 134 AAVAILEDVLEQVR 147 >gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM 4028] gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM 4028] Length = 133 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G KRIGLA+ + A P L + + +L+S I +E + A ++GLPL Sbjct: 2 KILGIDYGQKRIGLAM--ARQGMAFPFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG E F ++ R+ +P +E LT+ A+Q L + V +K + +D Sbjct: 60 DMNGDETLTTRQVLNFRDSLA-RRTELPIHLVNEALTSFDARQRLREAGVPERKHKEMLD 118 Query: 138 SIAAALILQEVLDR 151 +AA IL+ L+ Sbjct: 119 QMAAVCILETYLEN 132 >gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1] gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae SmR1] Length = 128 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D G KRIG+A+ + G + A P + + I A ++GLPL Sbjct: 3 TILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+E R F + + R V V DER ++ V + +R +++D Sbjct: 63 HPDGAEHEMSVRCRRFANQLHGR-YGVEVVLVDERYSSA----------VIQHQRGEQID 111 Query: 138 SIAAALILQEVLD 150 AAA+ILQ+ D Sbjct: 112 DQAAAIILQQYFD 124 >gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454] gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454] Length = 146 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D G KRIG+AI + R A + + + I ++GLP+ Sbjct: 7 TLLAFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPV 66 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ R F + + + + +P + DER ++V + R VD Sbjct: 67 HPDGAPHEMTRQARRFGNQL-NGRFNLPVTWVDERYSSV--------AAEAAGARGAVVD 117 Query: 138 SIAAALILQEVLDRISF 154 + AA +ILQ+ D S+ Sbjct: 118 AQAACIILQQYFDEQSY 134 >gi|119503502|ref|ZP_01625585.1| Holliday junction resolvase-like protein [marine gamma proteobacterium HTCC2080] gi|119460564|gb|EAW41656.1| Holliday junction resolvase-like protein [marine gamma proteobacterium HTCC2080] Length = 132 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D G KRIG+A+ + P L + + ++G PLNM Sbjct: 1 MAFDWGLKRIGVAVGNTLLATCEPLCVLNARDGVPNWAAIAELFKEWQPEQLVVGDPLNM 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + S R F + + + +P DERLT+ A+ L + + VD+ Sbjct: 61 DDSVAEITRRARRFSRQL-EGRFNLPVSLTDERLTSREARIQLEEQGLPYH---GAVDAH 116 Query: 140 AAALILQEVL 149 AA LILQ L Sbjct: 117 AAQLILQSWL 126 >gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606] gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606] Length = 146 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 6/143 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I SID G KR GLA++D + A+ + + L +I E + +IG Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATV---STSILIDFLKDYIAKETVELIVIGR 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKR 132 P+ +G+ + FV+ VP ++DER T+V A ++++D + R++R Sbjct: 58 PVKPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRER 117 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 VD I+A +ILQ+ + + Sbjct: 118 KGLVDEISATIILQDFMQYKRSM 140 >gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1] gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1] Length = 153 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 66/135 (48%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +D+G R+G+A + A P L + EL SFI E A +GL Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +NG EG R++ + + +P DERL++V+A + L VS ++ + Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122 Query: 136 VDSIAAALILQEVLD 150 VD +AA IL++ ++ Sbjct: 123 VDQVAAQQILEQAIE 137 >gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase Length = 171 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 11/155 (7%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68 +D+GT RIGLA+SD G R A P L R+ Q + I +I Sbjct: 13 PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 72 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILI 123 ++GLP ++ G+ V + + R +V DERLTTV A Q L Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 132 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157 VS KK + VD AA ILQ LD RI+ LE+ Sbjct: 133 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLEN 167 >gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J] gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J] Length = 143 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 9/142 (6%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 S+ + + D G KRIG+A+ + R A + + V ++ + Sbjct: 9 TASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPV 68 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 F++G+P++ +G E P + + F + ++ R +P + DER ++++AQ D S Sbjct: 69 GFVVGMPVHPDGEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQ----DAGAS- 122 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141 >gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis ATCC 15703] gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis L2-32] gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis ATCC 15703] gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis L2-32] Length = 151 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IDLG R+GLA+SDP AHP + V + E++ I E++ +IGLPL Sbjct: 4 LGIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPLL 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126 +NG EG R + N+ R VP DERLTTV+A L D Sbjct: 64 LNGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDAR 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 + +K VD +A +ILQ LDR Sbjct: 124 IGGRKHRPMVDQQSAVVILQTALDR 148 >gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M] gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M] Length = 151 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 3/142 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG K +G+A+S A + K + L I I ++G P Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLGYPK 68 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q D Sbjct: 69 HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKD 128 Query: 138 SIAAALILQEVLDRISFLESSK 159 IAA +ILQ LD I + + Sbjct: 129 EIAATIILQNYLDYIKLHTNKE 150 >gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis VCU144] Length = 123 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73 I +D+G+K +G+AISD A L + +L+ I + +I Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122 >gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 147 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ +Q I + D GT+++G+AI A+P P + K +LL + F+ Sbjct: 4 IQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFL 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+ SE R F + + + DERLTT A++ L + + Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQ-TNIQTWMVDERLTTREAREELESYQSKGQAK 122 Query: 133 IQKVDSIAAALILQEV 148 DS AAAL++Q Sbjct: 123 RLSADSFAAALLIQSW 138 >gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 152 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 68/141 (48%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M Sbjct: 7 LAIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLPKLM 66 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G EG R++ ++ R +P DERL++ A L V +++ + VD + Sbjct: 67 SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQL 126 Query: 140 AAALILQEVLDRISFLESSKG 160 AA IL L+ ++ + G Sbjct: 127 AAVTILTRALETLTQTGNLPG 147 >gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8] gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8] Length = 164 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G +RIGLAI+DP A P L R + + FI + ++G PL Sbjct: 6 RILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVVVGNPL 65 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK------- 130 + +GS P+ AF + + + DERLTT+ A +L S + Sbjct: 66 HADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTAGRSHG 125 Query: 131 ---KRIQKVDSIAAALILQEVL 149 R +D +AA L+L+ L Sbjct: 126 KTIDRKDLIDQVAATLLLESFL 147 >gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL B-14911] gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL B-14911] Length = 111 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 68/107 (63%), Gaps = 1/107 (0%) Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106 + ++ +L I +++ ++GLP NMNG+ GPR +++ F + +R +P Sbjct: 6 ISEEEKEFGFDQLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAGEL-ERLFGLPV 64 Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 V WDERLTT++A+++L++ +VSRKKR + +D +AA++ILQ LD Sbjct: 65 VLWDERLTTMAAERVLLEADVSRKKRKKVIDKMAASMILQGYLDSRK 111 >gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC 19977] gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus] Length = 166 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 1/141 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72 +D+GT RIG++ SDP A P + R K + + ++ + Sbjct: 17 PGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVV 76 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP N+ G F + +R VP DER TT +AQ+ L + V +++ Sbjct: 77 VGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQ 136 Query: 133 IQKVDSIAAALILQEVLDRIS 153 +D AA ILQ+ L++ Sbjct: 137 RGIIDQAAAVAILQDWLEQRR 157 >gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM 12112] gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM 12112] Length = 142 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G RIG+A SD FA + R +T + I +E + A ++GLP Sbjct: 5 LGLDIGDVRIGVAKSDGLAMFASSYEVIDR-NITDPFERIKEIINSEKVIALVLGLPKTK 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137 +G +V FV + +P + DER TT A+ L + + K+R + VD Sbjct: 64 DGQNSIQVEKIERFVSELKLFIPENLPIHYIDERYTTKEAEYYLKNFSKKNGKERRKVVD 123 Query: 138 SIAAALILQEVLDRIS 153 +AA +ILQ LD+ Sbjct: 124 MVAAQIILQNFLDKYR 139 >gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis ATCC 700755] gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis ATCC 700755] Length = 137 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D G KR G+AISD + A + + + Q EL I E++ ++G P Sbjct: 4 KVIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135 +++G + F+ ++ + DER T+ A Q +ID + +K+R Sbjct: 61 HIDGKPMQLEKNILYFIEDVQALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKGL 120 Query: 136 VDSIAAALILQEVLDRI 152 VD I+A +ILQ L I Sbjct: 121 VDEISATIILQNYLQYI 137 >gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N] gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N] Length = 131 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + A P + ++ + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L L +G + P R F + + R V DER +++ AQ+ L Sbjct: 62 LALATDGGDQPATLRCRRFANQLHGR-FGVTVELVDERGSSMEAQEKLGSH--------A 112 Query: 135 KVDSIAAALILQEVLDRIS 153 D++AAA+ILQ LDR++ Sbjct: 113 PDDAMAAAIILQRYLDRLA 131 >gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA] gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA] Length = 143 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D G KRIG+A+ + R A + + V ++ + F++G+P Sbjct: 16 GTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMP 75 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++ +G E P + + F + + R +P + DER ++++AQ D S + Sbjct: 76 VHPDGEEQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAS----DDVL 126 Query: 137 DSIAAALILQEVLDR 151 D+ AA +ILQ+ D Sbjct: 127 DAEAARIILQQFFDE 141 >gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus F0309] gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus F0309] Length = 162 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 57/141 (40%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+GT R+G++ DP P L R L + + + I+GLP ++ Sbjct: 9 IGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHL 68 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G EG R + + V DER+T+ A L + + +D + Sbjct: 69 RGGEGISAKGARKYARRIKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVIDQV 128 Query: 140 AAALILQEVLDRISFLESSKG 160 AA +IL++ L+ + G Sbjct: 129 AAQIILEQALELERMGGRAPG 149 >gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC 27678] gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1] gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC 27678] gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1] Length = 158 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP AHP + V + E++ I E++ ++GLPL Sbjct: 4 LGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLL 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126 +NG G R + N+ R +P DERLTTV+A Q L D Sbjct: 64 LNGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 + ++ VD +A +ILQ LDR Sbjct: 124 IGGRRHRPMVDQQSAVVILQTALDR 148 >gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 136 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID GTKR GLA++DP + A + Q L + E + AF+IGLP Sbjct: 2 RILSIDYGTKRTGLAVTDPLKLIASGLTTV---DTPQLLPFLEKYTAEEAVEAFVIGLPK 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 +N + + + + +R + +DER T+ A Q +ID + +K+R K Sbjct: 59 RLNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKAL 118 Query: 136 VDSIAAALILQEVLD 150 +D I+A LILQ+ L+ Sbjct: 119 IDEISATLILQDFLN 133 >gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W] Length = 151 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG K +G+A+S A + K + L I+ I ++G P Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLGYPK 68 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MN G + + F + ++ V + WDERL+TV A Q+L N + + +Q D Sbjct: 69 HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQMKD 128 Query: 138 SIAAALILQEVLDRISFLESSK 159 IAA +ILQ LD I + + Sbjct: 129 EIAATIILQNYLDYIKLHPNKE 150 >gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484] gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484] Length = 133 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ID GTK +GLA+ D + A P + + + + ++ ++GLPL Sbjct: 2 RVLCIDWGTKSLGLALGDTNLKLATPLKPIP--NRGKVLERIAELVKEYDVRLVVVGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +G EG R R+FV + V WDER TT A Q+L SRKK + Sbjct: 60 TPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKELK 117 Query: 137 DSIAAALILQEVLDRI 152 DS++A +ILQE LD + Sbjct: 118 DSVSALIILQEYLDSL 133 >gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 155 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ +KS+ ++ I +D+G K+IG+A SD + A R+ +++ L Sbjct: 1 MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + + +IGLP ++ E F + +I + V DE L+T A Sbjct: 61 RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKK-CKVHIYLQDESLSTSLATH 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 L +S K + D IAA +ILQ LD+I+ ++ Sbjct: 120 ALKITGISITKSKKIDDKIAACIILQRTLDKINAIK 155 >gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis subsp. sepedonicus] gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 161 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 2/142 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLPLN 78 ++D+G RIGLA SDP A P + R + +L + ++GLPL Sbjct: 7 LAVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLA 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G F + D + DERL+TVSAQ L +K+ +D Sbjct: 67 LSGRATASTDDAEGFARRLADA-TEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125 Query: 139 IAAALILQEVLDRISFLESSKG 160 +AA +ILQ L+ S G Sbjct: 126 VAAVIILQHALETERAAGSPPG 147 >gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b] gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b] Length = 138 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G RIG+A DP A + R K T + + E ++G+ Sbjct: 1 MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKVVVGM 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P +++G++ +V FV + + +F DER TT A+ L + + K+R + Sbjct: 60 PKSLDGTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119 Query: 135 KVDSIAAALILQEVLDRIS 153 VD +AA++ILQ+ LD + Sbjct: 120 VVDMVAASIILQKYLDTLP 138 >gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum EbN1] gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1] Length = 156 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G RIG+A+ + R A L + + + ++G+ Sbjct: 15 RGTLLAFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGM 74 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQ 134 P +++G+ R F + + R +P + DERL++ +A L + + R Q Sbjct: 75 PSHLDGTPHEMTARCRRFANQLHGR-FGLPVLECDERLSSAAADAALAEAGTHDWRARKQ 133 Query: 135 KVDSIAAALILQEVLD 150 +D++AA +ILQ LD Sbjct: 134 VLDAVAAQIILQHFLD 149 >gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254] gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254] Length = 138 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G RIG+A DP A + R K T + + E ++G+ Sbjct: 1 MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKIVVGM 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134 P +++G++ +V FV + + +F DER TT A+ L + + K+R + Sbjct: 60 PKSLDGTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119 Query: 135 KVDSIAAALILQEVLDRI 152 VD +AA++ILQ+ LD + Sbjct: 120 VVDMVAASIILQKYLDTL 137 >gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium glucuronolyticum ATCC 51866] gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium glucuronolyticum ATCC 51866] Length = 189 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 13/159 (8%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITT 65 + ++D+GT RIG+A SD R A P + R + ++ + Sbjct: 16 PGDGRRLALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVRE 75 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQI 121 IIGLP ++ G+ V R + +P F DERLTTV A Q Sbjct: 76 YEPVEVIIGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQA 135 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159 L ++ + + VD AA ILQ LD R S+L +S+ Sbjct: 136 LHASGLTERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174 >gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas acidaminovorans] gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas acidaminovorans] Length = 138 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 1/139 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + I ++D G KRIG+A+SDP R F+ P L K Q EL IT + I Sbjct: 1 MSSKGRILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLI 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IG+P ++GS P+ + ++ + D + + +DER +T A + L M + ++ Sbjct: 61 IGIPYAIDGSITPKTEECQQILNRLKD-VLSISVEGFDERYSTWEANEELKKMGYNWRQA 119 Query: 133 IQKVDSIAAALILQEVLDR 151 + D+++AA+IL+E L++ Sbjct: 120 KEIKDAMSAAMILKEFLNQ 138 >gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168] gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168] Length = 122 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91 AI A + + T + + I+GLPLNM+G+E P R Sbjct: 2 AIGQRITGSARALAAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR 61 Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 F N I + V DERL+TV A+ L + R K+DS +A +IL+ ++ Sbjct: 62 KFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKIDSASAVIILESYFEQ 120 >gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM 266] gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM 266] Length = 142 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 5/140 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L + I +ID GTKRIGLA +DP + FA R + L I + Sbjct: 3 LTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFERTTLFAL---LEKMAANNEIEKIL 59 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G PL+ + S F+ + +P DE ++ A QILI +K R Sbjct: 60 VGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKKAR 119 Query: 133 IQK--VDSIAAALILQEVLD 150 +K +DS AA +IL++ L+ Sbjct: 120 KEKGRIDSAAACVILRDYLE 139 >gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC 27679] gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium JCVIHMP022] gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC 27679] gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium JCVIHMP022] Length = 158 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG R+GLA+SDP AHP + V + E++ I E++ ++GLPL Sbjct: 4 LGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLL 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126 +NG G R + N+ R +P DERLTTV+A Q L D Sbjct: 64 LNGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 + ++ VD +A +ILQ LDR Sbjct: 124 IGGRRHRPMVDQQSAVVILQTALDR 148 >gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4] gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4] Length = 137 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G R+G+A+SD A P L ++V A + + GLP Sbjct: 2 RVVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLPK 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +++G+ G + ++ +P F DERL++ A++IL K+ +D Sbjct: 62 SLDGACGAQAEKITQQAQHIA-ACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHID 120 Query: 138 SIAAALILQEVLD 150 IAA+L LQ LD Sbjct: 121 MIAASLFLQAYLD 133 >gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2] gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2] Length = 134 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + D G KRIG+AI R A P + K + +A ++ Sbjct: 4 PIEGVVIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP+ +NG E R F + R P + +E+L+++ A+Q + K Sbjct: 64 GLPMRLNGEEQALTQPARKFGQRLSGR-YQRPVYYIEEQLSSIEAEQ-------RKTKTD 115 Query: 134 QKVDSIAAALILQEVLDRI 152 Q +D AA +IL+ LD + Sbjct: 116 QPMDDHAAQIILENWLDAL 134 >gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR51-B] gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium NOR51-B] Length = 143 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G ++IG+AI + P + + ++ I ++G PL Sbjct: 7 TVMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPL 66 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+GS+ F + R P DERLT+ A+ D + +D Sbjct: 67 NMDGSDSEMGARAAKFSRQLNGRFAK-PVDLVDERLTSREAKSQSRDRGHNGNYTTDPID 125 Query: 138 SIAAALILQEVLD 150 AAALIL + Sbjct: 126 DEAAALILNTWFE 138 >gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201] gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201] Length = 165 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFIIGLP 76 +D+GT R+G+A++DP A P L R + A + + ++ +GLP Sbjct: 11 MGVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLP 70 Query: 77 LNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 ++NG E R + + R DERL+TV+A + L+D VSR++ Sbjct: 71 RSLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREH 130 Query: 133 IQKVDSIAAALILQEVLDR 151 + +VD AA LQ +D+ Sbjct: 131 MDRVDQAAAVTFLQTAVDQ 149 >gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM 271] gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM 271] Length = 142 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ++D GTKRIGLA +DP + FA P + + + E+ + I +IG Sbjct: 6 RKRIIAVDYGTKRIGLAKTDPLQLFAQPVGTFSEEALFRAIKEISGL---DGIGRILIGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PLN +GS AF + + +P +E ++ SA QILI+ +SRKKR Sbjct: 63 PLNADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHEK 122 Query: 134 QKVDSIAAALILQEVLDR 151 ++DS +A ++LQ LD+ Sbjct: 123 GRLDSASACVLLQAHLDK 140 >gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7] gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7] Length = 137 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 9/139 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + + D GTK+IG+AI + R A P L Q + + ++G Sbjct: 5 PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL +GSE R F + + R V V DER +++ AQQ+L Sbjct: 65 LPLATDGSEQYASLRCRRFANQLHGR-FGVETVLVDERGSSMEAQQML--------GNNT 115 Query: 135 KVDSIAAALILQEVLDRIS 153 D++AAA+ILQ LD ++ Sbjct: 116 DDDAVAAAIILQRYLDGLA 134 >gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12] gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 139 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID G K +GLAISDP R A K L + + ++G P+ Sbjct: 2 RVLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYPI 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++ G E R R +I+ + +P F DERLTT+ A+++L++ ++ RKKR + Sbjct: 62 SLRGHENERTQKVRHIAE-LIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLKN 120 Query: 138 SIAAALILQEVLDRIS 153 AA +ILQ+ LD S Sbjct: 121 KQAAVIILQKYLDSSS 136 >gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 146 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K+IG+A+ + + P L + + + I ++GLPLN Sbjct: 14 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S Sbjct: 74 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 132 Query: 139 IAAALILQEVLDR 151 AA +IL+ ++ Sbjct: 133 CAAVIILESWFNQ 145 >gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 135 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K+IG+A+ + + P L + + + I ++GLPLN Sbjct: 3 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S Sbjct: 63 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121 Query: 139 IAAALILQEVLDR 151 AA +IL+ ++ Sbjct: 122 CAAVIILESWFNQ 134 >gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of Drosophila ananassae] gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi] gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of Drosophila ananassae] gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi] Length = 155 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 1/156 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L Sbjct: 1 MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + +IG+PLN++ E + F + +I + V DE L+T A Sbjct: 61 RIFKENEAGSMVIGIPLNIDEQETKWCKTIIQFANKIIKK-YKVNTYLQDESLSTSIATH 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 L +S K + D I+A +ILQ LD+I+ ++ Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155 >gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile DSM 44702] Length = 178 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 6/152 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENI 68 +D+GT RIG+++SDP A P + K + +L I + Sbjct: 22 PGRGRRLGLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFV 81 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLP+++ + + + + +P DER++T++A + V+ Sbjct: 82 VEVVVGLPVSLRSHRTRSTRRAENYATRL-RKNLDIPVRLVDERMSTMAATNAMHASGVN 140 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +KK ++D AA ILQ LD + G Sbjct: 141 QKKGRSRIDQAAAVHILQGWLDARKAFSARHG 172 >gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM 15894] gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM 15894] Length = 184 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 5/151 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69 P +D+G RIGLA SDP A P + R + + + A Sbjct: 27 PRGARLGVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAA 86 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 +GLP +++G EG RAF + VP DER++TV+A L Sbjct: 87 VVYVGLPRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKS 146 Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160 K +D AA +ILQ LD + G Sbjct: 147 KSHRPVIDQAAAVIILQSALDAERAAGTRAG 177 >gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL 2338] Length = 158 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73 P + ID+G R+G+A+SDP A P L R + L+ + + ++ Sbjct: 12 PGRR-LGIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVV 70 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G+P + G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+ Sbjct: 71 GMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQR 130 Query: 134 QKVDSIAAALILQEVLDR 151 VD AA ILQ LD Sbjct: 131 AVVDQAAAVEILQAWLDS 148 >gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20] Length = 155 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D+G RIG+A D + P L R + E + + I+GLP +M Sbjct: 3 IAFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHM 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G RA+ ++ R V DERLTTVSA + L + + VD Sbjct: 63 GGGSSSSTKDARAWARDLASRLPRRVCVRLVDERLTTVSAHRDLHAAGLKERSFRGIVDQ 122 Query: 139 IAAALILQEVL--DRISFLESSK 159 AA +IL++ + +R+S + + + Sbjct: 123 AAAVVILEQAITTERMSGVPAGE 145 >gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 138 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G++RIG+AISDP + A P L +K + L I +IG P+ Sbjct: 2 RILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLYSC-LDKIFNEHQIEKIVIGYPV 60 Query: 78 ---NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 + + ++ + +R+ V + WDER +T + ++IL + NVS +KR + Sbjct: 61 SKFHPD-KATEKLQKIDEICSEL-ERRYKVGIIKWDERFSTKAVERILREENVSWQKRKK 118 Query: 135 KVDSIAAALILQEVLDRIS 153 VD +AA ILQ LD I+ Sbjct: 119 VVDKLAAVYILQGYLDFIN 137 >gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4] gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4] Length = 147 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 D G ++IG+A+ A P L + + I I+GLPLNM+ Sbjct: 18 GFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLPLNMD 77 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 SE + R F + + R + + DERL+T+ A++ L + S R ++D +A Sbjct: 78 QSEQLLTQAARRFGNRLHGR-YGLAVEWVDERLSTIEARERLN-LKPSSLGRHPELDQVA 135 Query: 141 AALILQEVL 149 A ILQ L Sbjct: 136 AQCILQTWL 144 >gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900] Length = 146 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + FI+GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQEV 148 DS AAAL++Q Sbjct: 125 ADSFAAALLIQSW 137 >gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 157 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 13/145 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IDLG R+GLA+SDPG AHP + V + E++ I E++ ++GLPL Sbjct: 4 LGIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPLL 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126 ++G EG R + N+ R VP DERLTTV+A L D Sbjct: 64 LSGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDAQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151 V +K VD +A +ILQ +DR Sbjct: 124 VGGRKHRPMVDQQSAVVILQTAIDR 148 >gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF] gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE] gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii ACICU] gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057] gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein [Acinetobacter baumannii AB307-0294] gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624] gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606] gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii AB056] gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii AB058] gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii AB059] gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013150] gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013113] gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6014059] gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE] gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii] gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU] gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978] gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein [Acinetobacter baumannii AB307-0294] gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624] gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606] gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2] gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii TCDC-AB0715] gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013150] gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6013113] gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii 6014059] Length = 146 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + FI+GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQEV 148 DS AAAL++Q Sbjct: 125 ADSFAAALLIQSW 137 >gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans] gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans] Length = 131 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G KRIG+A+ + + A P + + +T A I+GL Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + +G+E R F + + R V V DER ++ V +R Sbjct: 61 PRHPDGAEHEMTVRCRRFANQLHGR-FDVATVLVDERYSSA----------VISHQRGDL 109 Query: 136 VDSIAAALILQEVLD 150 +D AAA+ILQ+ D Sbjct: 110 IDDQAAAIILQQYFD 124 >gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus RS-1] gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus RS-1] Length = 147 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +ID G R+GLA+ PG A P + + LL+ I +N +IG Sbjct: 1 MEKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGY 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P G EG R F + R+ VP + DE +T A + L + +S ++ + K Sbjct: 61 PARAGGDEGLTGRQVRNFAARLA-RRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAK 119 Query: 136 VDSIAAALILQEVL 149 VD++AAA+IL+ L Sbjct: 120 VDAMAAAVILERYL 133 >gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3] gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3] Length = 140 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + Q I +ID GTKRIG+A SDP FA P + R +++ L + + + Sbjct: 1 MPLYQRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSKL---LSPMVEAGEVQLVV 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G PLN +G + F+ ++ +P +E ++ SA Q+L+ SRK+R Sbjct: 58 VGYPLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKER 117 Query: 133 --IQKVDSIAAALILQEVLDR 151 ++D+ AA L+L + L++ Sbjct: 118 KTKGRLDTAAACLLLSDYLEQ 138 >gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM 43017] gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis DSM 43017] Length = 154 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73 P + ++D+G+ R+G+A+SDP A P L R + EL + ++ I+ Sbjct: 6 PGRR-LAVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVIV 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP + G + + +R V DERL+TVSA ++L V +K+ Sbjct: 65 GLPRTLADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQR 124 Query: 134 QKVDSIAAALILQEVLD 150 VD AA LQ LD Sbjct: 125 AVVDQAAAVEFLQAWLD 141 >gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1] gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1] Length = 148 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 4/137 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 D GT IG+A+ A L + L++ I AFI+G+PL Sbjct: 5 TFLGFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKR-IQ 134 NM+G+E R F + + R P+ DERL+T A Q L + R R Q Sbjct: 65 NMDGTETILAPRARKFGNRLTGRFRK-PWFPVDERLSTREAWQALESQHQLHKRALRGNQ 123 Query: 135 KVDSIAAALILQEVLDR 151 +VD++AAALIL L+ Sbjct: 124 RVDAVAAALILGSWLES 140 >gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043] gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 ID+G R+G+A SDP FA+P L R + + ++ ++GLP Sbjct: 9 LGIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIVVGLPRL 68 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G EG RA+ + R VP DERLTTV A Q L D V + + VD Sbjct: 69 LSGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQRSVVDQ 128 Query: 139 IAAALILQEVLD 150 AA LILQ LD Sbjct: 129 AAAVLILQSALD 140 >gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus PHEA-2] Length = 146 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + F++GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQEV 148 DS AAAL++Q Sbjct: 125 ADSFAAALLIQSW 137 >gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str. F0058] gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str. F0058] Length = 138 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID GTKR+G+A++DP A + ++ E ++T + +IG Sbjct: 1 MARILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDFLNE---YLTVNDCNRLVIGY 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PL + F+ Y+ + +DER T+ A ++ + R+KR Sbjct: 58 PLTLRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDK 117 Query: 134 QKVDSIAAALILQEVLDRIS 153 +D I+A +ILQ L+ IS Sbjct: 118 AVIDRISATIILQNYLESIS 137 >gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2] gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2] Length = 144 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID GT+RIGLA D A P P L + L + + I ++G P NM Sbjct: 4 LGIDYGTRRIGLAYGDELG-IATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYPYNM 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + AF ++ + +P DERLT+ A+ + + + VDS Sbjct: 63 DGSAGFKAKEVDAFAESL-RAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIVDSR 121 Query: 140 AAALILQEVLDR 151 AAALILQ+ LD+ Sbjct: 122 AAALILQDFLDQ 133 >gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1] gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1] Length = 146 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI A+P P V K +LL + F++GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQEV 148 DS AAAL++Q Sbjct: 125 ADSFAAALLIQSW 137 >gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A] gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii PG-8A] Length = 140 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78 +DLG K +G+AIS A + + +LL + I ++GLP + Sbjct: 5 GLDLGEKSLGVAIS-ESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKH 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN G + F ++ K V + WDERL+T +A +IL D N K+ D Sbjct: 64 MNNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDE 122 Query: 139 IAAALILQEVLDR 151 +AA +ILQ L+ Sbjct: 123 VAAQVILQNYLNS 135 >gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603] gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603] Length = 167 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 13/154 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------------TALELLSFITTE 66 +D+G R+G+A DP A P L R + +L Sbjct: 10 LGVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEER 69 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 A +GLP +++G+ G + + ++ DERLT+ +A L D Sbjct: 70 LAVAVYVGLPKHLSGARGVSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDAG 129 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 ++ +D AA +IL L+ L S G Sbjct: 130 RRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163 >gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13] gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13] Length = 149 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G KRIG AI + R A P + + ++ I I+GLP Sbjct: 24 ILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVKLIVGLPSY 83 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+E + F + + R + + DER ++ V +R + D+ Sbjct: 84 PDGTEHEMTRRCKRFANQLRGR-FSLEIIMVDERYSSS----------VLHFQRGKADDA 132 Query: 139 IAAALILQEVLDR 151 AAALILQ+ D Sbjct: 133 HAAALILQQYFDE 145 >gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 144 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + N + S D GTK IG+AI + P + K ++ + I I Sbjct: 2 MYRNNLLISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYII 61 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLPLNM+GS + F + ++ +P + DERLTT+ A+ +L + + Sbjct: 62 VGLPLNMDGSYQTSTIKAKKFAKQLRNKFF-MPVMMHDERLTTIEAKSVLFKKYGYKGLK 120 Query: 133 IQKVDSIAAALILQEVLDRISF 154 + +DS +A +IL ++ I F Sbjct: 121 KKLIDSESAVIILDSWMNSIYF 142 >gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila UWE25] gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 134 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 8/131 (6%) Query: 28 RIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFI------TTENIAAFIIGLPLNMN 80 RIGLA SD + A P + KK QT ++LL I I +IGLPL M+ Sbjct: 3 RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G G + F ++ + +P WDERLTTV A++ L + ++RKKR + VD ++ Sbjct: 63 GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121 Query: 141 AALILQEVLDR 151 A++ILQ LD Sbjct: 122 ASIILQSYLDS 132 >gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp. 1501(2011)] Length = 179 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%) Query: 10 VKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTEN 67 K+ P Q + +D G K++G+A+ + + A P LV LL I T Sbjct: 20 TKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWK 79 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILI 123 I ++GLPLNM+GS F + R +++VP +DERLT+V A+++ Sbjct: 80 IGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAW 139 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149 ++ + + +R +D I+A L+LQ L Sbjct: 140 ELGLIKNER-DPIDDISACLLLQSYL 164 >gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145] gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145] Length = 139 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 ++DLG++ G AISD A E+L ++ I I+G P Sbjct: 4 LALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKNEVLRYMKEYKIDGIILGYPK 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +GS+ + F +++ + + +P ++ DE+ +T +A++ILI + ++R+KR D Sbjct: 64 KNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKNFKD 122 Query: 138 SIAAALILQEVLDRIS 153 +AA LIL++ L+ Sbjct: 123 KLAAQLILEDYLNYYR 138 >gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 147 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I + D GT+++G+A+ A P K EL I F++GLP Sbjct: 8 QMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPNVFLVGLP 67 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+ SE R F + + + DERL+T +A+ L + + + Sbjct: 68 LNMDDSESELSARARKFARRLRHQ-TNIETWMVDERLSTRAARDELSHYHAQGRGKKVSA 126 Query: 137 DSIAAALILQEV 148 DS+AA L ++ Sbjct: 127 DSLAATLFIESW 138 >gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake] gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake] Length = 156 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I++ VK + + I +D G K+IG+A+SD A P +++ + L Sbjct: 1 MLYKSIDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLY 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + N+ + +IG P+ ++G E + +I + + DER +T A + Sbjct: 61 NIFVENNVGSMVIGWPIELSGIESELCQKVVLLANRIIAK-YKINIYLHDERYSTAMATR 119 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + N+ RK+ D IAA LILQ+VLD Sbjct: 120 VAKLANIKRKESQSIDDKIAAMLILQQVLD 149 >gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum ATCC 33209] gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 169 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 +D+GT R+G+A+ DP A P + R K ++ + +GLP Sbjct: 13 LGVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYVGLPQT 72 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 + G+E RA + D V DERL++VSA Q L ++ +++ + Sbjct: 73 LRGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAGREQRK 132 Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160 +D +AAA ILQ L+ +E S+G Sbjct: 133 VIDQVAAAGILQHALE----MEKSRG 154 >gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3] gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3] Length = 142 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76 ID G R GLA+SDP R A P L + L + IT E A ++GLP Sbjct: 1 MGIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAALAARITAEEAEAVVMGLP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L +G++ R + R+V +P + E L++ A L D ++ +KR + Sbjct: 61 LLDDGTDSLTTRQVRNVTERL-KRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKAVL 119 Query: 137 DSIAAALILQEVL 149 D AA IL L Sbjct: 120 DQQAAVRILASFL 132 >gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha JMP134] gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134] Length = 141 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + L + + + D G K+IG+A+ + R A L V + I Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQ 66 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G+P+N G E P + R F + + + + +P + DER ++ A M Sbjct: 67 LVVGMPVNPEGGEQPSMRLARRFGNQL-NGRYSLPVEWVDERYSSRMA-----AMGG--- 117 Query: 131 KRIQKVDSIAAALILQEVLDRIS 153 R ++D+ AA +ILQ+ D++ Sbjct: 118 ARRGELDAEAARIILQQYFDQLP 140 >gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa PA7] gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 144 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + + KP + + D GT++IG+A+ A L + + + I Sbjct: 1 MAADKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 A ++GLPLNM+GS F + + + +P DERLTT +A+ + Sbjct: 61 AIVVGLPLNMDGSPSEMSERAEKFGRRL-NGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119 Query: 130 KKRIQKVD 137 R + VD Sbjct: 120 GYRERPVD 127 >gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus asiaticus 5a2] gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus 5a2] Length = 141 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR+GL+++DP + A P + T L +++ EN+ AF++G Sbjct: 1 MGRIMAIDYGLKRVGLSVTDPLQIIASPLTTVAAND---TLTFLQTYVKKENVEAFVVGY 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++ P + + F+ + DER T+ A L++ +K R K Sbjct: 58 PTDIKDKNTPIIVAISQFIELLQRNFPDQQIFQHDERYTSKLAAASLVEGGFKKKDRRNK 117 Query: 136 --VDSIAAALILQEVL 149 +D ++A +ILQ L Sbjct: 118 ENLDKLSATIILQSFL 133 >gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 129 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137 M+G+ F + + + V DERLTT A+ + + R VD Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125 Query: 138 SIAA 141 +IAA Sbjct: 126 AIAA 129 >gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1] gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1] Length = 168 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%) Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 K L P+ P+ ++D+G KRIG+A+ D L+R+ +L + Sbjct: 19 KDLPPDFALPLIALDIGMKRIGVAVCDRFGISCRGVTCLMRRDHGWP-QQLAKVVREYGA 77 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 + + GLP NM+G+EG + RA V + + + +P F DERL+T +A++ L + Sbjct: 78 KSVVAGLPKNMDGTEGVQAADARAAVAEL-KKTLPLPVTFQDERLSTWTAKERLYAQGLR 136 Query: 129 RKKRIQKVDSIAAALILQEVL 149 KK +K+D AAA+IL++ L Sbjct: 137 EKKVQEKLDQTAAAVILEDFL 157 >gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 138 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR G AISDP + ++ +K + L + +I F++G Sbjct: 1 MGRIVAIDYGEKRTGFAISDPLKMIVSSFVTVLSRK---AVMYLKNCTENYDIELFVLGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P M+ + + F N+ + DER T+V A +I+I+ V + KR Sbjct: 58 PRQMDYTPSENMPRVEKFKRNLRRVIPSIDVQMVDERFTSVLAHRIMIEGGVKKIKRQDK 117 Query: 134 QKVDSIAAALILQEVLDRIS 153 VD ++AA++LQ L+ + Sbjct: 118 GLVDRLSAAILLQTYLEFLR 137 >gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 137 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K IG+A+ + + L K + + + + ++GLPLN Sbjct: 3 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G+ F ++ K + DERL+T A+ ++ N + + +K+ S Sbjct: 63 IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121 Query: 139 IAAALILQEVLDR 151 +AA +IL+ ++ Sbjct: 122 VAAVIILESWFNQ 134 >gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa PAO1] gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2] gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa LESB58] gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa PAb1] gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016] gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58] gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016] Length = 144 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + S KP + + D GT++IG+A+ A L + + + I Sbjct: 1 MASDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 A ++GLPLNM+GS F + + + +P DERLTT +A+ + Sbjct: 61 AIVVGLPLNMDGSPSEMSERAEKFGRRL-NGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119 Query: 130 KKRIQKVD 137 R + VD Sbjct: 120 GYRERPVD 127 >gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme BU-1] gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme BU-1] Length = 145 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L P + + +ID GTKRIG+A SDP FA P R +++ L + I +++IA I Sbjct: 3 LTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSK---ALGTMIQSDDIALVI 59 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G PL+ NG + F+ + + + DE ++ A+ IL+ SRK R Sbjct: 60 VGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKVR 119 Query: 133 --IQKVDSIAAALILQEVLDR 151 +VDS AA ++L+E L+ Sbjct: 120 QQKGRVDSAAACILLREYLEN 140 >gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] Length = 138 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++ + N + ++G+ Sbjct: 1 MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL D+N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD 150 VD +AA++ILQ LD Sbjct: 120 VVDKVAASIILQTYLD 135 >gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 2_1_31] gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum ATCC 33693] gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 2_1_31] gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum ATCC 33693] Length = 138 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++ + N + ++G+ Sbjct: 1 MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL D+N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD 150 VD +AA++ILQ LD Sbjct: 120 VVDKVAASIILQTYLD 135 >gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117] gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis Re117] Length = 157 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 +D+G R+G+A SDP A P L R K LL I + +G P + Sbjct: 6 LGVDVGLARVGVAASDPSGILATPVMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 + G+ R + + + + + DERL+TV+A + L + + Sbjct: 66 LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125 Query: 135 KVDSIAAALILQEVLD 150 VD +AA ILQ+VL+ Sbjct: 126 VVDQVAATEILQQVLE 141 >gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf. prausnitzii KLE1255] gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf. prausnitzii KLE1255] Length = 191 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 2/133 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76 I ++D G R GLA D + K + A + +IGLP Sbjct: 50 KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIGAELIVIGLP 109 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+EG R +R ++ +P WDER TT +A IL + KR + + Sbjct: 110 LNMDGTEGERAIKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADILDESGTFGTKRKEIL 168 Query: 137 DSIAAALILQEVL 149 DS++A +IL + L Sbjct: 169 DSVSATVILDDYL 181 >gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7] gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7] Length = 163 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G +RIG+A+ P + + L ++ ++G PLN+ Sbjct: 21 LGLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNL 80 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQK 135 +G+ P + F + +R +P DER ++ A++ L + S RK + Sbjct: 81 DGTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGD 139 Query: 136 VDSIAAALILQEVL 149 +D+++AA++L Sbjct: 140 IDALSAAILLDNWF 153 >gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 148 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G K IG+A+ + + L K + + + + ++GLPLN Sbjct: 14 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 73 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 ++G+ F ++ K + DERL+T A+ ++ N + + +K+ S Sbjct: 74 IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 132 Query: 139 IAAALILQEVLDR 151 +AA +IL+ ++ Sbjct: 133 VAAVIILESWFNQ 145 >gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM 44233] gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM 44233] Length = 169 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------------KVTQTALELLSFITTEN 67 +D+GT R+G+A SDP A P L R + T L + + Sbjct: 19 LGVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRDLVVEHD 78 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + ++GLP + G EG V + RA+ + VP V+ DERLTTV+A ++L + Sbjct: 79 VVEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRVLAQAGI 138 Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESS 158 K R VD +AA ILQ LD ++ S Sbjct: 139 KGKARRAVVDQVAATRILQNRLDLLAAGRRS 169 >gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145] gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145] Length = 147 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q I + D GT+++G+++ A+P P K ELL + + F++GLP Sbjct: 8 QTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLP 67 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+ SE R F + + + DERLTT A+ L + + Sbjct: 68 LNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREARDELDHYQAQGRGKKLSA 126 Query: 137 DSIAAALILQEV 148 DSIAAAL+++ Sbjct: 127 DSIAAALLIESW 138 >gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27] gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27] Length = 168 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTENIAAFII 73 P + ++D G KRIGLA+SD A P + R+ E++ ++ +I Sbjct: 4 PVGRLLAVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYIF 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL+ G E R R + R+ +P DER TT +A + + + S + R Sbjct: 64 GLPLDPGGDETDRSREVREVAGKLATRQP-LPVRLVDERFTTSAALRSIREQGGSTRGRK 122 Query: 134 QKVDSIAAALILQEVL 149 VD++AA ++L+ VL Sbjct: 123 GDVDALAACVLLEGVL 138 >gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098] gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098] Length = 145 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGLP 76 ID G R GLA +DP A+P + + L I E A ++GLP Sbjct: 4 VGIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAALAGRILEERPDAVVMGLP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L +G+E R + R+V +PF F E L++ +A++ L ++ + ++ + Sbjct: 64 LLTDGTESMTTRQVRNVTERL-KRRVPLPFYFMSELLSSEAAERELREVGRTGRRCKAVL 122 Query: 137 DSIAAALILQEVL 149 D AA IL+ L Sbjct: 123 DQQAAVRILESFL 135 >gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia solanacearum MolK2] gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia solanacearum MolK2] Length = 144 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + + + D G KRIG+A+ + R A + + V ++ I Sbjct: 10 APVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVG 69 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 F++G+P++ G + P + + F + + R +P + DER ++++AQ D + Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122 Query: 131 KRIQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 --DDVLDAEAARIILQQFFDE 141 >gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum NCIMB 41171] Length = 145 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83 G R+GLA+SDP FAHP + + ++++ I E + ++GLPL ++G+E Sbjct: 2 GDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGTE 61 Query: 84 GPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMNVSRKK 131 G R + N+ R + DERLTTVSA + L++ + ++ Sbjct: 62 GKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSRR 121 Query: 132 RIQKVDSIAAALILQEVLD 150 VD +A +ILQ LD Sbjct: 122 HRPVVDQQSAVVILQTALD 140 >gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1] gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1] Length = 177 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 11 KSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENI 68 + +P Q + +D G K++G+A+ + + A P L LL I T I Sbjct: 19 AAARPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRI 78 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILID 124 ++GLPLNM+GS F + R +++VP +DERLT+V A+++ + Sbjct: 79 GRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWE 138 Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149 + + + +R +D I+A L+LQ L Sbjct: 139 LGLIKNER-DPIDDISACLLLQSYL 162 >gi|330815719|ref|YP_004359424.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3] gi|327368112|gb|AEA59468.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3] Length = 147 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 4/143 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 + + D G KRIG+A+ + R A + + + I A ++G Sbjct: 7 REATLLAFDYGEKRIGVAVGNTLTRTARALVIVSNLNREYRFEAVGALIAEWRPDALVVG 66 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LP++ +G+ + F + + + + +P + DER ++V A+ L I Sbjct: 67 LPMHPDGTPHEMTQQAKRFGNQL-NGRFNLPVNWIDERYSSVEARAGLRARGAKADAAID 125 Query: 135 KVDSIAAALILQEVLDRISFLES 157 AA +ILQ LD++ Sbjct: 126 A---EAARVILQHYLDQLPDHHE 145 >gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri A1501] gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas stutzeri A1501] Length = 142 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK+IG+A+ A L + ++ + + A ++GLPLN Sbjct: 7 LLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+GS F + + + +P DERLTT A+ + R + VD Sbjct: 67 MDGSPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYRERPVD 124 >gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07] gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07] Length = 144 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 9/142 (6%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 S+ + + + D G KRIG+A+ + R A + + V ++ ++ Sbjct: 9 TASVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPV 68 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 F++G+P++ G + P + + F + + R +P + DER ++++AQ D + Sbjct: 69 GFVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT- 122 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141 >gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM 4166] Length = 142 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK+IG+A+ A L + ++ + + A ++GLPLN Sbjct: 7 LLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+GS F + + + +P DERLTT A+ + R + VD Sbjct: 67 MDGSPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYRERPVD 124 >gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 156 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + +D G ++G+A+ + + A P ELL I + ++ IIGLP Sbjct: 12 ETVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLP 71 Query: 77 LNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 LNM+GS + + F + + P + DERLT+ A+ + + + + Sbjct: 72 LNMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSD- 130 Query: 133 IQKVDSIAAALILQEVL 149 + +DSIA+A++L L Sbjct: 131 KEPIDSIASAIMLGSWL 147 >gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829] gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829] gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829] Length = 141 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G R+G+A+SD A P L ++V A + + GLP Sbjct: 2 RVLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + G G + + R + F DERL++ A++IL + S K+ +D Sbjct: 62 TLAGDVGAQAQKLMEQAQTIA-RACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHID 120 Query: 138 SIAAALILQEVLDRIS 153 IAA+L LQ LD Sbjct: 121 MIAASLFLQAWLDERR 136 >gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1] gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1] Length = 147 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +Q I + D GT+++G+AI + P K +LL + F++GL Sbjct: 7 HQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGL 66 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + DERLTT A+ L + + Sbjct: 67 PLNMDDSESELSARARKFARRLRHQ-TNITTWMVDERLTTREARDELESYQEQGRAKKIA 125 Query: 136 VDSIAAALILQEV 148 DSIAA+L++Q Sbjct: 126 ADSIAASLLIQSW 138 >gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 146 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ I + D GT+++G+AI +P P V K +LL + F++GL Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PLNM+ SE R F + + + + DERLTT A++ L + + Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124 Query: 136 VDSIAAALILQEV 148 DS AAAL++Q Sbjct: 125 ADSFAAALLIQSW 137 >gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2] gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2] Length = 140 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID+G R G+A+SD R A P L +V A + + G PL + Sbjct: 4 LAIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G GP+ RA I +P F DER+++ A++IL + + ++ K+D I Sbjct: 64 AGELGPQAERIRAEAEA-IGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMI 122 Query: 140 AAALILQEVLDRIS 153 AA+L LQ LDR + Sbjct: 123 AASLFLQTWLDRRN 136 >gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum IPO1609] gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia solanacearum IPO1609] Length = 144 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 9/141 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + + D G KRIG+A+ + R A + + V ++ I Sbjct: 10 APVPLQGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVG 69 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 F++G+P++ G + P + + F + + R +P + DER ++++AQ D + Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122 Query: 131 KRIQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 --DDVLDAEAARIILQQFFDE 141 >gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16] gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia eutropha H16] Length = 141 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + L + + + D G K+IG+A+ + R A L V + + I N Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQ 66 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+G+P+N G E P + R F + + + + +P + DER T+ +A Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRFGNQL-NGRFGLPVEWVDERYTSRAASMA--------G 117 Query: 131 KRIQKVDSIAAALILQEVLDR 151 R ++D+ AA +ILQ+ D+ Sbjct: 118 ARRGELDAEAARIILQQYFDQ 138 >gi|300775195|ref|ZP_07085057.1| Holliday junction resolvase family protein [Chryseobacterium gleum ATCC 35910] gi|300505935|gb|EFK37071.1| Holliday junction resolvase family protein [Chryseobacterium gleum ATCC 35910] Length = 138 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G R G+A +D + A + + + + L + + + +IGL Sbjct: 1 MGQILAIDYGKARCGIAATDDMQIIASGLETVENRSLMEF---LKKYFSENKVDEVVIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+++ G+ F+ + +DER T+ A + ++KKR +K Sbjct: 58 PIDLKGNISEVETDILKFIEEFKKEFSDIAVHRFDERFTSKMASFFISQSGKNKKKRQEK 117 Query: 136 --VDSIAAALILQEVLDR 151 +D ++A +ILQ L++ Sbjct: 118 GLIDKVSATIILQNFLEQ 135 >gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine bacterium EB0_35D03] Length = 142 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGL 75 + D+GTKR G+AI++ A + K + +L I FI+G+ Sbjct: 4 KTYLGFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGM 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+ + E R+F + +++ +F DE L++ A++ L + Sbjct: 64 PLDKDNKEQEMTFIARSFGRKL-EKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGD 122 Query: 136 VDSIAAALILQEVLDRISF 154 VD +A LILQ L+ ++ Sbjct: 123 VDKRSAKLILQTWLNETTY 141 >gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164] gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164] Length = 147 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GT+++G+AI + A+P K LL + F++GLPLN Sbjct: 10 IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+ SE R F + + + + DERLTT A+ L R DS Sbjct: 70 MDESESELSARARKFARRLRHQ-TNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128 Query: 139 IAAALILQEV 148 IAAAL+++ Sbjct: 129 IAAALLIESW 138 >gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35243] gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC 35243] Length = 145 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 63/128 (49%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 D+G R+G+A + A P L + EL SFI E A +GLP +NG Sbjct: 2 DVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNGK 61 Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142 EG R++ + + +P DERL++V+A + L VS ++ + VD +AA Sbjct: 62 EGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAAQ 121 Query: 143 LILQEVLD 150 IL++ ++ Sbjct: 122 QILEQAIE 129 >gi|226942476|ref|YP_002797549.1| Holliday junction resolvase-like protein [Azotobacter vinelandii DJ] gi|259495698|sp|C1DI77|RUVX_AZOVD RecName: Full=Putative Holliday junction resolvase gi|226717403|gb|ACO76574.1| Holliday junction resolvase-like protein [Azotobacter vinelandii DJ] Length = 142 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GT++IG+A+ A L + + + A ++GLPLN Sbjct: 7 LLGFDYGTRQIGVAVGQAITGQARELCVLKAQNGVPDWSRVEQLVKEWRPDAMVVGLPLN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M+G+ F + R +P DERLTT A+ + R + VD Sbjct: 67 MDGTPSEMSERAERFARRLHGR-FGLPVHTHDERLTTFEAKGYRLAQGQRDGYRRRPVD 124 >gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273] gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273] Length = 141 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +KP I ID GTKRIGLA++DP + FA P + EL + + + + Sbjct: 1 MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTF---EPGGLHHELRRIMQGDTVDLAV 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G P+ +GS FV + + DE ++ A +IL SRK R Sbjct: 58 VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117 Query: 133 IQK--VDSIAAALILQEVLDR 151 +K +DS AA ++L L+ Sbjct: 118 REKGRLDSAAACVLLTRFLEE 138 >gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis MCE9] gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis MCE9] Length = 151 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I + D G K+IG+A+ + + A P + V + ++I N ++GLP+ Sbjct: 13 TILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPI 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + G E +R F + + R +P DER ++V AQ+I D Sbjct: 73 TLGGQEQEASRLSRKFANQLHGR-FNLPVELIDERYSSVEAQEICH-CGPDE-------D 123 Query: 138 SIAAALILQEVL 149 AAA+IL+ Sbjct: 124 HYAAAVILERFF 135 >gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957] gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957] Length = 144 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 9/141 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + + + D G KRIG+A+ + R A + + V ++ I+ Sbjct: 10 APVPLHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVG 69 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 F++G+P++ G + P + + F + + R +P + DER ++++AQ D + Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGNQLRGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122 Query: 131 KRIQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 --DDVLDAEAARIILQQFFDE 141 >gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547] gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius DSM 20547] Length = 161 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPLNM 79 ++D+G R+G+A DP A P + ++ + E ++GLP ++ Sbjct: 4 AVDVGLARVGVASGDPDGVLATPVETVAVAPGLTALDRVVQLVRQEERSTGVVVGLPRHL 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G E R + + R V DERL+TV+A + + + V K++ ++D Sbjct: 64 DGHESTSAVEARRWATALASRLGPTVRVWLVDERLSTVAASRGMREAGVRAKEQRTRIDQ 123 Query: 139 IAAALILQEVLD 150 AA ILQ LD Sbjct: 124 AAAVEILQMSLD 135 >gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis 158L3-1] gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis 158L3-1] Length = 147 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTE----NIAAFII 73 +DLG K G AISD + A ++ + + ++ + I+ Sbjct: 4 LCLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDEIIL 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL M+ SE + F + +P DER +T +A+ IL + K++ Sbjct: 64 GLPLRMDLSESKTTKMVKKFATVLAKNIT-LPIRLQDERQSTKNAEAILSQGGYNAKQKK 122 Query: 134 QKVDSIAAALILQEVLDRISFLESS 158 K DS+AA LIL++ L+R +S+ Sbjct: 123 LKKDSLAAQLILEDYLERQHHEKSN 147 >gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis Il1403] gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis Il1403] Length = 119 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 39 RFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96 A P + L I ++GLP +MNG EG R ++R + Sbjct: 1 MTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRDYGTK 60 Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + + + + DERLTT A+++LID V RK+R + +D +AA LILQ LD Sbjct: 61 LANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSIDKLAAVLILQNYLD 113 >gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922] gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922] Length = 132 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D G KR G+A++D + A P L K++ + E ++ +IGLP+ Sbjct: 1 MALDFGEKRTGIAVTDELQIIATPVDTLETKELFNFFET---YFAKEKVSELVIGLPMKF 57 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137 +G P + + F+ +P +E T+ A Q I + +K R +D Sbjct: 58 SGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKGSLD 117 Query: 138 SIAAALILQEVL 149 I+A +ILQ L Sbjct: 118 KISATIILQSFL 129 >gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2] gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2] Length = 139 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 ++DLG++ G AISD A EL + I I+G PL Sbjct: 4 IALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILGYPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +GS+ +F MI+ + + V DE+ +T +A+ ILI + RKKR Q D Sbjct: 64 KNDGSKSQSTLRVESF-KKMIEDNIDIKVVLVDEQYSTKNAENILIFSGMKRKKRKQFKD 122 Query: 138 SIAAALILQEVL 149 +AA LIL++ L Sbjct: 123 KLAAQLILEDFL 134 >gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B] gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B] Length = 152 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID G R+GLA+SDP R A P + + ELL IT++ IAA ++G P Sbjct: 3 KILAIDYGQARVGLAVSDPEGRMAFPFATVAWQTRDALFRELLDVITSQGIAAIVVGYPA 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G E R FV + R+ +P V DE +T A + L + +S +VD Sbjct: 63 RAGGDESLTGRQVRKFVARL-SRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSARVD 121 Query: 138 SIAAALILQEVL 149 + AAA+IL L Sbjct: 122 AQAAAVILTRYL 133 >gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium prausnitzii L2-6] Length = 143 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 5/144 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76 I ++D G R GLA D P + K + A + +IGLP Sbjct: 2 KILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELIVIGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+EG R +R ++ +P WDER TT +A +L + KR + Sbjct: 62 LNMDGTEGERARKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKSIL 120 Query: 137 DSIAAALILQEVLDRISFLESSKG 160 DS++A +IL + I + + G Sbjct: 121 DSVSATVILDDY---IQWRKEHPG 141 >gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS] gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS] Length = 133 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D G KRIG AI + + A P + + + E+ I A ++GLP + Sbjct: 8 ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+E R F + + R + + DER T+ V K Q D+ Sbjct: 68 PDGTEHDMTRRCRRFANQLHGR-FALDTILVDERYTSS----------VLNFKPGQADDA 116 Query: 139 IAAALILQEVLDR 151 AAALILQ+ D Sbjct: 117 HAAALILQQYFDE 129 >gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_27] gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_27] Length = 138 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + ++D+G RIG+A SD A P + RKKV ++ + + ++G+ Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134 P +++G E + R ++ + + + DER +TV A IL ++N + ++ + Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRK 119 Query: 135 KVDSIAAALILQEVLD 150 VD +AA++ILQ LD Sbjct: 120 VVDKVAASIILQTYLD 135 >gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 140 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIGLPLNM 79 D G R GLA+SDP R A P + + T L I A ++GLPL Sbjct: 2 DYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQ 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G E R + R++ +PF + E L++ A L + + +KR +D Sbjct: 62 DGKESLTTRQVRNVTQRL-KRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQ 120 Query: 140 AAALILQEVL 149 AA IL L Sbjct: 121 AAVRILSSFL 130 >gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6] gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6] gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus TK-6] Length = 133 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D G+KRIGLA+ D A P + ++ + I+ ++ I+GLPL Sbjct: 2 KVLALDYGSKRIGLALGDTSLNIASPLGVF--ENREGVVEKIRNLISEYRVSLLIVGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 G +G R FV + + + + WDER TT A +L ++ KR + Sbjct: 60 TPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLL--QDLPPTKRKKLK 117 Query: 137 DSIAAALILQEVLDRI 152 DS++A +IL+E L+ + Sbjct: 118 DSLSAYIILKEYLESL 133 >gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4] gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4] Length = 136 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G R GLA++D + A + + L + T E++ F++G P Sbjct: 4 ILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDF---LKDYTTKESVELFLVGEPKQ 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136 MN F+ + ++P DER T+ A Q +ID + +K+R K V Sbjct: 61 MNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNKALV 120 Query: 137 DSIAAALILQEVL 149 D I+A +ILQ L Sbjct: 121 DEISATIILQSYL 133 >gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ] gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ] Length = 147 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID G R+GLA++DP R P L + ELL+ I+ + + ++G P+ Sbjct: 3 RLLAIDYGQARVGLAVTDPEARVVFPLRTLAWETRDALFHELLAVISDQAVTRIVVGYPM 62 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 G EG R FV + R+ VP DE +T A + L + + K+ + +VD Sbjct: 63 RAGGDEGLTGRQVRNFVSRLT-RRTTVPVELVDEAHSTEEAAERLREAGYAGKELLARVD 121 Query: 138 SIAAALILQEVL 149 + AAA+IL+ L Sbjct: 122 AQAAAVILERYL 133 >gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15] Length = 144 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 9/142 (6%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + + + + D G KRIG+A+ + R A + + V ++ + Sbjct: 9 TAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPV 68 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 F++G+P++ G + P + + F + + R +P + DER ++++AQ D + Sbjct: 69 GFVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT- 122 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141 >gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis LMG 19424] gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424] Length = 141 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 + L + + + D G K+IG+A+ + R A L V + + I N Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQ 66 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 I+G+P+N G E P + R F + + + + +P + DER T+ +A Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRFGNQL-NGRFGLPVEWVDERYTSRAASMA--------G 117 Query: 131 KRIQKVDSIAAALILQEVLDR 151 R ++D+ AA +ILQ+ D+ Sbjct: 118 ARRGELDAEAARIILQQYFDQ 138 >gi|114319510|ref|YP_741193.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1] gi|114225904|gb|ABI55703.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1] Length = 144 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 1/136 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G +RIG+A+ + L + E+ + ++GL Sbjct: 6 SGTWLAFDHGDRRIGVAVGEALTGGGRALITLSARAGQPDWEEVGRLLAEWRPQGVVVGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+ +GS+ + R F + R + DERL++ A L + +R Sbjct: 66 PLHADGSDSESTRAARKFAQRLHGR-YGLRVELVDERLSSHEAAARLSERRGRPTRRPGA 124 Query: 136 VDSIAAALILQEVLDR 151 +DS AA +IL+ + Sbjct: 125 LDSEAARVILETWFSQ 140 >gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1] gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1] Length = 152 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + S + + D G KRIG+A+ + R A + + I Sbjct: 1 MSGSNAREATLLAFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRP 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID---- 124 A ++GLPL+ +G+ R F + + + + +P + DER ++V A+ L + Sbjct: 61 DALVVGLPLHPDGTPHEMTQQARRFGNQL-NGRFSLPVSWIDERYSSVEARAQLRERGAR 119 Query: 125 -----MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157 + +V ILQ LD++S Sbjct: 120 GAARGAAAAVDAEAARV-------ILQTHLDQLSDHHE 150 >gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM 3776] gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM 3776] Length = 199 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 30/168 (17%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 ++ + +D G KR+GLAIS + A P RK + + +A Sbjct: 21 QAFPREGCLLGVDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAG 80 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--- 127 ++GLPL+ +G E R F + R +P FWDER T+VSA+ ++ V Sbjct: 81 LVVGLPLHTSGEESELSREVRQFGEWLA-RCTNLPLRFWDERYTSVSAELLMWQDGVFPR 139 Query: 128 -----------------------SRKKRI---QKVDSIAAALILQEVL 149 +R K+ VD +AA +IL L Sbjct: 140 SGNKPASGRTSKKSPGAGHSSPQNRAKKKTPVSPVDKLAAHMILTAFL 187 >gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D+G R+G+A+ DPG R A P L +V A + + GLP Sbjct: 2 RIMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLPY 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + G EGP+ RA + + + +P F DERL++ A++ L + + ++ K+D Sbjct: 62 TLAGQEGPQAARIRA-AADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKID 120 Query: 138 SIAAALILQEVLD 150 IAA+L LQ LD Sbjct: 121 MIAASLFLQAWLD 133 >gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii M21/2] gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii M21/2] Length = 143 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76 I ++D G R GLA D + K + A + +IGLP Sbjct: 2 KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+EG R +R ++ +P WDER TT +A +L + +R + + Sbjct: 62 LNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEIL 120 Query: 137 DSIAAALILQEVL 149 DS++A +IL++ L Sbjct: 121 DSVSATVILEDYL 133 >gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM 13031] gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM 13031] Length = 143 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +ID GTKRIG+A SDP + FA P + R ++ L + ++ I IIG Sbjct: 6 KKRVIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGM---LEEMLRSDEIGRVIIGY 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PL NG F+ +++ + DE ++ A++IL SRK R Sbjct: 63 PLGGNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEK 122 Query: 134 QKVDSIAAALILQEVLDRIS 153 ++DS AA ++L E L+ + Sbjct: 123 GRIDSAAACVLLTEYLESRN 142 >gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Roseomonas cervicalis ATCC 49957] gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Roseomonas cervicalis ATCC 49957] Length = 159 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M I+ + +L +L P+Q + +D G K IG+A++D A P L R K+ A E+ Sbjct: 1 MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + E ++GLPL ++GS GP + + + + + +P WDERL++ + + Sbjct: 61 AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTRALSEA-TGLPAALWDERLSSSAVNR 119 Query: 121 ILI-DMNVSR 129 +LI + +++R Sbjct: 120 MLIQEADLTR 129 >gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037] gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037] Length = 157 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID+G R+G+A SDP A P + RK + +++ ++GLPLN+ Sbjct: 10 LGIDVGRARVGVARSDPDGVLAVPVETVPRK--GEPVRRIVALAAEYEAFEVLVGLPLNL 67 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + RA + + P DERL+TVSA +L S++ VD + Sbjct: 68 RGEDTASTADARA-FAQELAAALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRSIVDQV 126 Query: 140 AAALILQEVLD 150 AA ++LQ+ LD Sbjct: 127 AAVVLLQQALD 137 >gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium prausnitzii SL3/3] Length = 143 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76 I ++D G R GLA D + K + A + +IGLP Sbjct: 2 KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGLP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 LNM+G+EG R +R ++ +P WDER TT +A +L + +R + + Sbjct: 62 LNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEIL 120 Query: 137 DSIAAALILQEVL 149 DS++A +IL++ L Sbjct: 121 DSVSATVILEDYL 133 >gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum GMI1000] gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia solanacearum GMI1000] Length = 144 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + + D G KRIG+A+ + R A + + V ++ + F++G+ Sbjct: 15 HGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGM 74 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P++ G + P + + F + + R +P + DER ++++AQ D + Sbjct: 75 PVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT----DDV 125 Query: 136 VDSIAAALILQEVLDR 151 +D+ AA +ILQ+ D Sbjct: 126 LDAEAARIILQQFFDE 141 >gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster bacterium] Length = 140 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 2/136 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75 Q D+GTKR G+AI++ A + K + I+ ++ FI+GL Sbjct: 3 QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P N +GSE ++F + +++ + DE L++ A+ L + Sbjct: 63 PFNKDGSEQEMTFIAKSFARKL-EKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121 Query: 136 VDSIAAALILQEVLDR 151 VD +A LILQ L+ Sbjct: 122 VDKRSAQLILQTWLNE 137 >gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str. BVAF] gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str. BVAF] Length = 146 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GTK IG+A+ L T + I+GLPL Sbjct: 7 IMAFDFGTKNIGVAVGQKLTCTTTSLNVLHSIAGTPDWKNIELMYNEWKPKTLIVGLPLQ 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135 ++GSE ++ F + ++ +DER TT+ A+ + S+ K + K Sbjct: 67 IDGSEQYITILSKKFAIQLKNK-FNTTVEMYDERFTTLEARSNFYNQYCSKFSEKIKKNK 125 Query: 136 VDSIAAALILQEVLD 150 +DSIAA +IL+ L+ Sbjct: 126 IDSIAAEIILKSWLN 140 >gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 144 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 7/137 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D GTK IG+AI A P L + + T F++GLPL Sbjct: 10 VMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLK 69 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR----KKRIQ 134 ++GSE P + F + VP DER +T A+ L + Sbjct: 70 IDGSEQPITILAKIFAIQL-KELFPVPVKMHDERFSTSEAR--LNYFKYYHDDLCARSNI 126 Query: 135 KVDSIAAALILQEVLDR 151 K+++IAA +IL+ L++ Sbjct: 127 KINAIAAGVILKSWLNK 143 >gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia floridanus] gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus Blochmannia floridanus] Length = 142 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D GTK+IG+AI L K ++ I+GLPL Sbjct: 8 IMAFDFGTKKIGIAIGQKITGTTQSLEILPSKFGIPNWKKIEHIFNVWKPNKLIVGLPLK 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137 MNG+ ++ F + R + DER TT+ A+ I +K+ +D Sbjct: 68 MNGNTQHITLLSKRFAVQLTHR-FKITVEMHDERFTTIEARSIYFQHFRYYYRKKTTPID 126 Query: 138 SIAAALILQEVLDR 151 SIAA +IL+ L++ Sbjct: 127 SIAAEIILKSWLNQ 140 >gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium Broad-1] gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium Broad-1] Length = 156 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 64/145 (44%), Gaps = 6/145 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIGL 75 +D G RIG+A SDP A P + KK L + + ++GL Sbjct: 7 LGLDPGDARIGVARSDPTGFLATPLETV--KKGRGDLARLQAIVAEIGEESTMLEVVVGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P ++ G E P R F ++ R VP DERLTTVSA+ +L D + R Sbjct: 65 PRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDRRAV 124 Query: 136 VDSIAAALILQEVLDRISFLESSKG 160 VD AA +ILQ LD ++ G Sbjct: 125 VDMAAAVVILQHALDSERASGAAPG 149 >gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM 43183] gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM 43183] Length = 152 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID+G+ RIG+A SDP A P + R K + + I+GLP ++ Sbjct: 3 LGIDVGSVRIGVARSDPAGILATPLETVRRGKG--DLDRIAELVAEHEAVEVIVGLPTSL 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +G GP R F + R + +DERLTTV+A+ L V K R Q Sbjct: 61 SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120 Query: 136 VD 137 VD Sbjct: 121 VD 122 >gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis AD011] gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis subsp. lactis AD011] gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis subsp. lactis V9] Length = 163 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 18/152 (11%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK----VTQTALELLSFITTEN--IAAFII 73 +DLG R+G+A S+P R FA+P + V L+L+ E + A I Sbjct: 6 LGLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTAIAI 65 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQI 121 GLPL M+GS G + + ++ R +P +F DERLTTV A + Sbjct: 66 GLPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDAHRR 125 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 L D NVS K+ VD +A ILQ LDR Sbjct: 126 LFDANVSSKQHRAVVDQQSAVEILQTALDRAR 157 >gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium IMCC9480] gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium IMCC9480] Length = 135 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G KRIG+A+ + R A + + + + A I+G+ Sbjct: 1 METVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGM 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + +G+E R F + + R +P V DER T+ V ++R ++ Sbjct: 61 PFHPDGAEHEMSVRCRRFANQLHGR-YGLPTVLVDERYTSA----------VLGQQRGER 109 Query: 136 VDSIAAALILQEVLD 150 +D AAALILQ+ D Sbjct: 110 IDDRAAALILQQYFD 124 >gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM 20595] gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM 20595] Length = 153 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91 A D A P R++ ++ + + I+GLP NM+GSEG + R Sbjct: 19 ARCDTAGILATPVATYRRER--DDFSSVIELVREADALEVIVGLPRNMDGSEGKSAKNAR 76 Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 + + R V DERLTTVSA Q+L + VD +AA +IL+ L + Sbjct: 77 RWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEINHRSVVDQVAAVIILESALAQ 136 >gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC BAA-974] gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC BAA-974] Length = 164 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 63/148 (42%), Gaps = 12/148 (8%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------ALELLSFITTEN 67 P P +DLG RIGLAISD G FA P L R L + Sbjct: 4 PLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEHR 63 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 IA ++G P N+ G + FV + VP DER+TT+ A + L + V Sbjct: 64 IALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAGV 123 Query: 128 S-----RKKRIQKVDSIAAALILQEVLD 150 S RK + VD +AA ILQ LD Sbjct: 124 SGKRLVRKGQRGVVDQLAATAILQGWLD 151 >gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1] gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1] Length = 134 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+SDP + A P L RK +T ELL + + + ++G+P+N Sbjct: 1 MALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINA 60 Query: 80 NGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 G + F + +R +P DE +T A+++ + K ++ Sbjct: 61 QGEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEE 116 Query: 136 VDSIAAALILQEVLD 150 +D AAALIL+E L+ Sbjct: 117 LDDYAAALILKEWLE 131 >gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833] gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833] Length = 163 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G+ RIG+A SDP A P + R + + ++GLP ++ Sbjct: 7 IGVDVGSVRIGVARSDPSGVLAVPVETVRRGR--DDLDRIAEIAAEHEAIEVVVGLPTSL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G E + R + + R +P DERLTTV+AQ+ L + +++ +D Sbjct: 65 SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124 Query: 140 AAALILQEVLD 150 AA +LQ LD Sbjct: 125 AAVELLQAALD 135 >gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219] gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219] Length = 140 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG+ G++ S AH + + + ++L+ I E ++G PL Sbjct: 5 LGLDLGSVTCGVSAS-ETGLIAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVLGYPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +NG GPR + +++ + +P DER TTV A++IL+ ++SRKKR +K+D Sbjct: 64 LLNGDVGPRAQLSEE-FKEVLEEECGLPVHLMDERFTTVEAEEILLQADISRKKRKKKID 122 Query: 138 SIAAALILQEVLDRI 152 +AA ILQ LDRI Sbjct: 123 QLAAVQILQYYLDRI 137 >gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 187 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55 M +L E+L + L K + +D+G+K +GLA+SD R A P L R K Sbjct: 1 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60 Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111 A + + + ++A ++G P N+ G P V + + + + +WDE Sbjct: 61 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120 Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153 T+ + +L +N++ R + D AA ILQ LD ++ Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163 >gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 199 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55 M +L E+L + L K + +D+G+K +GLA+SD R A P L R K Sbjct: 13 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72 Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111 A + + + ++A ++G P N+ G P V + + + + +WDE Sbjct: 73 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132 Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153 T+ + +L +N++ R + D AA ILQ LD ++ Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175 >gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae R3021] gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae R3021] Length = 134 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 1/114 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D GTK IG AI A P + + + I+GLPLNM Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 +G+E R F + + R V DERLTT A+ + + + + Sbjct: 66 DGTEQDLTLRARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKK 118 >gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45] gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45] Length = 146 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFIIGL 75 S DLGTK G AISD A+ + ++ I I AF++G Sbjct: 4 LSFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVKEIIKMYQNSIDAFVLGY 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL NGS+ R F + + + DE +T+ AQ+IL D +S KK K Sbjct: 64 PLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKTKSK 123 Query: 136 VDSIAAALILQEVL 149 D+++A +IL + L Sbjct: 124 KDTVSAVIILNDFL 137 >gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM 45221] gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID G KRIGLA +D A P P V + + I + ++G PLNM Sbjct: 4 LGIDWGEKRIGLAFADEVG-IALPLPAAVAVSKKERMRHIEQMIQERRVRELVVGYPLNM 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +GS G + AF+ + +++ +P DERL++ S +Q L ++ ++DS Sbjct: 63 DGSVGFKAKEVDAFIEEL-EKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121 Query: 140 AAALILQEVLDRISFLE 156 AAALILQ+ ++ E Sbjct: 122 AAALILQDFIEEKRLNE 138 >gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1] gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1] Length = 145 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 ID GT+RIGLA D A P P LV + LL+ + ++G PL Sbjct: 2 RCLGIDYGTRRIGLAYGDELG-VATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHPL 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+ + GP+ A + V DERLT+ A+ + + +D Sbjct: 61 NMDDTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVID 120 Query: 138 SIAAALILQEVLDR 151 S AA LILQ+ LD+ Sbjct: 121 SRAATLILQDFLDQ 134 >gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae bacterium DG1235] gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae bacterium DG1235] Length = 149 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +D G +R+G+A D A P +V+ + L+ F+ G P Sbjct: 2 RCIGVDYGERRVGVAFGDDIG-VATPLQAIVKATEEERIQALVDLARERRATDFVFGYPY 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NMNGS G + AF+ ++ + +P DERLT+V A + +R K+D Sbjct: 61 NMNGSVGFKAKEVDAFIDKLLKA-IDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKID 119 Query: 138 SIAAALILQEVLDR 151 S+AA+LILQ+ L++ Sbjct: 120 SVAASLILQDYLNQ 133 >gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2] gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2] Length = 146 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFIIGL 75 S DLGTK G AISD A+ + +++ I I AF++G Sbjct: 4 LSFDLGTKTCGFAISDILEISANALETIRFVENDFNAVIVKVKEIIKMYQNSIDAFVLGY 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL NGS+ R F + + + DE +T+ AQ+IL D +S KK K Sbjct: 64 PLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKTKSK 123 Query: 136 VDSIAAALILQEVL 149 D+++A +IL + L Sbjct: 124 KDTVSAVIILNDFL 137 >gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila UNI-1] gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila UNI-1] Length = 152 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ++D G RIGLAISDP A + A + T + + I+G Sbjct: 2 KGRILAVDPGDVRIGLAISDPTGTIARALGVIHHVARAIDAATIAQIATEQGVVRIIVGQ 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 L+ +G P+ + I ++ +P WDE +T AQ M V RK+R Sbjct: 62 ALDDHGLPTPQGRKSARLAEA-IQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGH 120 Query: 136 VDSIAAALILQEVLD 150 +D +AA +ILQ+ L+ Sbjct: 121 LDDLAAVIILQDYLE 135 >gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084] gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084] Length = 137 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G R+G+A SD A P L ++V + + + G PL M Sbjct: 4 LALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRPLTM 63 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G +GP+ + +P F DERL++ A++IL + S + +VD + Sbjct: 64 AGEDGPQADRVMGQARRIAT-SCDLPLEFADERLSSQEAKRILREEGYSERDMRGRVDMV 122 Query: 140 AAALILQEVLD 150 AA+L LQ LD Sbjct: 123 AASLFLQAWLD 133 >gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata HTCC2501] gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata HTCC2501] Length = 132 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 D G KR G+A++DP + A + + L S++ E + +IG P M+ S Sbjct: 2 DYGQKRTGIAVTDPLQMIASGLTTVQ---TPELLDFLESYMGEEQVERIVIGEPRRMDNS 58 Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKVDSIA 140 R+F+ + R +P DER ++ A + +I+ + +++ VD I+ Sbjct: 59 PSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKIS 118 Query: 141 AALILQEVL 149 A LILQ L Sbjct: 119 ATLILQSYL 127 >gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM 16992] gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM 16992] Length = 151 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IDLG R+GLA+SDPG A+P + V + E++ I E + I+GLPL Sbjct: 4 LGIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPLL 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126 ++G EG R + N+ R VP DERLTTV+A L D Sbjct: 64 LSGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDAQ 123 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153 + + VD +A +ILQ +DR Sbjct: 124 IGGHEHRPMVDQQSAVVILQTAIDRRK 150 >gi|145588432|ref|YP_001155029.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046838|gb|ABP33465.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 138 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + + + + D GT+R+G+A+ + + + LE+ S + + Sbjct: 1 MPKSITVMAFDYGTRRVGVAVGNSVTQLGQALKTIAAANSEILFLEVASLLKEWQPDQLV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G PL+ +G+ F + + +P + DER T+ +++ + K Sbjct: 61 VGRPLHPDGTPHEMTAKASRFGNQL-HGHFALPVSWVDERYTS-----AILEGD---AKM 111 Query: 133 IQKVDSIAAALILQEVL 149 +D+ +AALIL++ Sbjct: 112 QDNLDAHSAALILEQYF 128 >gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50] gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50] Length = 143 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74 Q I ++D+G+K IGLA S A + + Q +L S++ N ++G Sbjct: 3 QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRKK 131 P NMN + G R + +D + DER TT A+ ILI N++R+K Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIRIDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142 >gi|149926767|ref|ZP_01915027.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105] gi|149824696|gb|EDM83912.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105] Length = 144 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D G KRIG+A + + A + + Q ++ S + ++G+P Sbjct: 14 LAFDFGLKRIGVAFGNSLTKTASGIAVVEAQNDEQRFAKIESLVKEWQPEGLVVGVPRQP 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G++ F + + + +P DER T+ + + + ++ +VD Sbjct: 74 DGADNELTTRCERFARQL-EGRFALPCAMVDERYTSAIIESCM--GGKAARENKGRVDMG 130 Query: 140 AAALILQEVL 149 +A LIL++ Sbjct: 131 SACLILEQFF 140 >gi|261855953|ref|YP_003263236.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2] gi|261836422|gb|ACX96189.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2] Length = 165 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGL 75 + D G RIG+A+ + A P L + Q + + ++G Sbjct: 8 GTWLAFDYGAWRIGVAVGEQMLGSARPLTTLHHRNAHQIQWDAIGQLLDEWRPVGLVLGW 67 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133 PL +G P R F + D + +P + DERL++ AQ +L + K + Sbjct: 68 PLMDSGETYPVAEFIRRFGRRL-DGRFNLPVRYVDERLSSEHAQMLLTTRHGKDKVKKSP 126 Query: 134 QKVDSIAAALILQEVLDR 151 +D+ AAA+IL+ + Sbjct: 127 SMIDAQAAAIILETFFSQ 144 >gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 143 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74 Q I ++D+G+K IGLA S A + + Q +L S++ N + ++G Sbjct: 3 QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P NMN + G R + +M + DER TT A+ ILI N++R+K Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNEDQIIKIDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142 >gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS] gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS] Length = 133 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 G K IG+A+SDP R A P L R +T + + + T ++GLP+++NG+ G Sbjct: 2 GDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTIG 61 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 P+ +AF ++ + + VF DER +T A++ + D + K + A+I Sbjct: 62 PQAEKVKAFSG-LLSQSLDTEIVFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118 Query: 145 LQEVLDRIS 153 LQ+ LD + Sbjct: 119 LQDYLDETN 127 >gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis OL] gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis OL] Length = 138 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76 I +D+G R+G+AISDP + A P + K EL +I +IG P Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELKN-KDLFDELDKIFQRYSIEKVVIGYPL 60 Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L+ + + ++ I + V V WDER +T + ++++ + ++ K++ + Sbjct: 61 SKLHPDLKD-EKLKKIDEISEK-IGSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKK 117 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ LD Sbjct: 118 VIDKVAAVYILQGYLD 133 >gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM 265] gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM 265] Length = 142 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + ID GTKRIGLA++DP R FA P R+ + E+ + IA ++G Sbjct: 3 KKRLVGIDYGTKRIGLAVADPLRIFARPVGTFSREGLQGALEEIE---RQDGIATLVVGY 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 PL+ G F+ + + V DE ++ A IL SRK R Sbjct: 60 PLSSGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKK 119 Query: 134 QKVDSIAAALILQEVLDRIS 153 ++D+ AA ++L L+ S Sbjct: 120 GRLDTAAACVLLTRYLEESS 139 >gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 143 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74 Q I + D+G+K IGLA S A + + Q +L ++ N + ++G Sbjct: 3 QSIIAFDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P NMN + G R + +M + DER TT A+ ILI N++R+K Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKSFNKDQIIKVDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142 >gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985] gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985] Length = 200 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------TALELLSFITTENI 68 P IDLG RIGLAISDP FA P L R L + I Sbjct: 41 RGPRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRI 100 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 A ++G P N+ G + FV + + VP DER+TT+ A + L + VS Sbjct: 101 ALVVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVS 160 Query: 129 -----RKKRIQKVDSIAAALILQEVLD 150 RK + VD +AA ILQ LD Sbjct: 161 GKRLVRKGQRGVVDQLAATAILQGWLD 187 >gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 143 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74 Q I ++D+G+K IGLA S A + + Q +L S++ N + ++G Sbjct: 3 QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRKK 131 P NMN + G R + +D + DER TT A+ ILI N++R+K Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIKIDERRTTKIAKNILIQANLTREK 120 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 + + DS+AA LIL+ L+ Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142 >gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER] gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64] gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER] gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64] Length = 144 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 ++DLGTK G AISD G A L ++ + T I ++G PL Sbjct: 4 LALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N + R +F H + +E TT++A IL + +S KKR D Sbjct: 64 RSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKAHKD 123 Query: 138 SIAAALILQEVLDR 151 +++A LILQE L+ Sbjct: 124 TLSAVLILQEFLNY 137 >gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1] gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1] Length = 132 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID GTKR+GLAI D A P+ L + + + ++ + ++GLPL Sbjct: 2 KIIAIDFGTKRVGLAIGDTDLGIAVPKGVL--RNDANLLDRIEDIVRSKGVKKVVVGLPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G EG R R F + R V WDER +T+ A+ L D + ++R + +D Sbjct: 60 TPSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRD--LPPRRRREVLD 117 Query: 138 SIAAALILQEVL 149 +I+A +IL+E L Sbjct: 118 AISAQIILEEYL 129 >gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542] gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM 10542] Length = 167 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---------TALELLS 61 ++L+ +D+G+ R+G+A+SDP A P L R VT L Sbjct: 5 QALERGAR-LCVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAE 63 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + + +GLP +++G+EG S RA+ + VP DER++TV+A Q Sbjct: 64 QVVERGVKVVYVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQA 123 Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150 L + +K VD +AA +ILQ LD Sbjct: 124 LHASGRAGRKHRAVVDQVAAVVILQSALD 152 >gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32] gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei U32] Length = 133 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 1/130 (0%) Query: 32 AISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90 A+SDP A P L R +L + +T + I+GLP + +GP Sbjct: 2 ALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAELA 61 Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 A+ + R VP DERLTTV+A +IL V +K+ VD AA ILQ +D Sbjct: 62 IAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWID 121 Query: 151 RISFLESSKG 160 + + +G Sbjct: 122 AAAAHRAREG 131 >gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 145 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 ++DLGTK G AISD G A L ++ + T I ++G PL Sbjct: 5 LALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPL 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N + R +F H + +E TT++A IL + +S KKR D Sbjct: 65 RSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKAHKD 124 Query: 138 SIAAALILQEVLDR 151 +++A LILQE L+ Sbjct: 125 TLSAVLILQEFLNY 138 >gi|94311674|ref|YP_584884.1| Holliday junction resolvase-like protein [Cupriavidus metallidurans CH34] gi|146325596|sp|Q1LJR1|RUVX_RALME RecName: Full=Putative Holliday junction resolvase gi|93355526|gb|ABF09615.1| putative Holliday junction resolvase (YqgF-like) [Cupriavidus metallidurans CH34] Length = 149 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 13/157 (8%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ + + L + + + + D G K+IG+A+ + R A L V + Sbjct: 1 MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVG 60 Query: 61 SFITTENIAAFIIGLPLN----MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 I ++G+P+N + E P + R F + + + + +P + DER ++ Sbjct: 61 ELIRQWTPVRLVVGMPVNPEAGPDDEEQPSMRLARRFGNQL-NGRFNLPVEWVDERYSSR 119 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 +A ++ KR +D+ AA +ILQ+ D + Sbjct: 120 AAA-------MAGAKR-GALDAEAARIILQQYFDELP 148 >gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5] gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5] Length = 131 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D GTKR+GLAI D + P+ + + ++ + + I+GLPL Sbjct: 2 KVLAVDYGTKRVGLAIGDEELKIVSPKGTV---SSKEAVKKIKEIVEKSRVGKVIVGLPL 58 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G EG R + FV + + + WDER TT A + L + KK+ + D Sbjct: 59 TPSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELKD 116 Query: 138 SIAAALILQEVLDRI 152 I+A +IL+E L+ + Sbjct: 117 VISAMIILEEYLNSV 131 >gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 141 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + ++D+G K+IG+A+SDP A+P + RK +T +LL I ++ IIG+ Sbjct: 1 MKRVMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGI 60 Query: 76 PLNMNGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P++ G E + F + +R + VF DE +++ A+++ + K Sbjct: 61 PISSEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLG---KT 117 Query: 132 RIQKVDSIAAALILQEVL 149 +++D IAAAL+L+E L Sbjct: 118 EKEEIDDIAAALMLKEWL 135 >gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae] gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae] Length = 146 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTEN--IAAFIIGL 75 + DLGTK G AISD A+ + ++ +I I AF++G Sbjct: 4 LAFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQYQNSIDAFVLGY 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL NG++ R F + + DE +T+ AQ+IL D+ S KK K Sbjct: 64 PLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKKTKSK 123 Query: 136 VDSIAAALILQEVL 149 D+++A +IL + L Sbjct: 124 KDTLSAVIILNDFL 137 >gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484] gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484] Length = 186 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 7/148 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENIAAFI 72 ++D+G+ R+GLA SDP A P L R ++V ++ A Sbjct: 12 LAVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGAAVVY 71 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP +++G+EG + RA+ + VP DER++TV+A Q L S ++ Sbjct: 72 VGLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRSGRRH 131 Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160 Q VD AA +ILQ LD G Sbjct: 132 RQVVDQAAAVVILQYALDAERATGRRPG 159 >gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J] gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448] Length = 130 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 27 KRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 K G AISD + ++P R + ++ I+ ++G PL + G Sbjct: 2 KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 PR F +++ + + VF DERLTT AQ L+D+ +S KKR + +D +AA +I Sbjct: 62 PRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120 Query: 145 LQEVLD 150 L+ L+ Sbjct: 121 LERFLN 126 >gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823] gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823] Length = 142 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G KR GLA+SD + FA + K + EL ++ E I +IG Sbjct: 1 MSKILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTL---MDELKKLVSKEKITEIVIGE 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P ++ S+ + R + V DER T+ A ++ + +K R Sbjct: 58 PKRLDTSDSHITQNVRLLKEAVQKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117 Query: 134 QKVDSIAAALILQEVL 149 +D+++A +ILQ+ L Sbjct: 118 GLIDTVSATIILQDYL 133 >gi|294341151|emb|CAZ89552.1| putative holliday junction resolvase [Thiomonas sp. 3As] Length = 137 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG A+ + R A L + + + I ++GLPL Sbjct: 14 TVLGFDWGAKRIGTAVGNSLTRSATALRTLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F + + + +P DER T+V+A+ + VD Sbjct: 74 HPDGAAHDNTAHAQRFARQL-EGRFRLPVALVDERYTSVAAED----------DGAKDVD 122 Query: 138 SIAAALILQEVLDR 151 S AA LI+++ L + Sbjct: 123 SAAAQLIVEQYLQQ 136 >gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093] gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093] Length = 154 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 4/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G +RIG+A + G FA R + R+ + + + E A ++GLP Sbjct: 5 VLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGLPRR 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKV 136 + G + + RAF + + + VF DER T+ A Q L+ + R +R +V Sbjct: 65 LRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEKGRV 122 Query: 137 DSIAAALILQEVL 149 D AA LIL+ L Sbjct: 123 DEGAAVLILETYL 135 >gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 142 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLN 78 D+GTKR G+AI++ A + K T + I+ NI F++GLP N Sbjct: 7 LGFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGLPFN 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E ++F + + +R + F DE L++ A+++L + + VD Sbjct: 67 QQGKEQTMTFIAKSFGNKLKNR-YQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRDDVDK 125 Query: 139 IAAALILQEVLDRISF 154 ++ LILQ L+ F Sbjct: 126 QSSQLILQTWLNEKRF 141 >gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 155 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 4/143 (2%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++P+ + D+G++RIG+A+ A + + L A Sbjct: 4 AGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPA 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMN 126 ++G PL ++ + P AF + +R +P V DER ++V A Q Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARELRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 127 VSRKKRIQKVDSIAAALILQEVL 149 R++ +D++AAA+I++ L Sbjct: 123 RKRRRDADTLDAMAAAVIVERWL 145 >gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor lactoaceticus 6A] gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor lactoaceticus 6A] gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 138 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76 I +D+G R+G+AISDP + A P + + EL S +I +IG P Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDSIFQRFSIEKVVIGYPL 60 Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L+ + + ++ I + V V WDER +T + ++++ + ++ K++ + Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IKSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKK 117 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ LD Sbjct: 118 VIDKVAAVYILQGYLD 133 >gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp. lyrata] gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp. lyrata] Length = 542 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74 +D+G K +GLAISDP A P L+RKK A + + + +++ ++G Sbjct: 394 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVG 453 Query: 75 LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P +N E V + F+ + ++ V + +WDERL++ + + +L +N+ + Sbjct: 454 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 511 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 +D +AA +ILQE LD + Sbjct: 512 EKTMLDKLAAVVILQEYLDYAN 533 >gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii HA] gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 142 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLP 76 D+GTKR G+AI++ A + K T +EL I + NI FI+GLP Sbjct: 5 TYLGFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLP 64 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + G E ++F + +R + F DE L++ A+++L + + V Sbjct: 65 FDKQGKEQIMTFIAKSFGKKLKNR-YQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRGNV 123 Query: 137 DSIAAALILQEVLDRISF 154 D ++ LILQ L+ F Sbjct: 124 DKQSSQLILQTWLNEKKF 141 >gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195] gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides ethenogenes 195] Length = 133 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 G K IG+A+SDP R A P L R +T + + + T +IGLP+++NG+ G Sbjct: 2 GDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTIG 61 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 P+ +AF ++ + + +F DER +T A++ + D + K + A+I Sbjct: 62 PQAEKVKAFSG-LLSQSLNTEIIFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118 Query: 145 LQEVLDRIS 153 LQ+ LD + Sbjct: 119 LQDYLDETN 127 >gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana] Length = 548 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74 +D+G K +GLAISDP A P L+RKK A + + + +++ ++G Sbjct: 400 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVG 459 Query: 75 LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P +N E V + F+ + ++ V + +WDERL++ + + +L +N+ + Sbjct: 460 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 517 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 +D +AA +ILQE LD + Sbjct: 518 EKTMLDKLAAVVILQEYLDYAN 539 >gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641] gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum DSM 15641] Length = 140 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + S+D+G R G+AISDP R A P L +V A + + GLPL Sbjct: 2 RVLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 ++GS G + RA + D +P F DERL++ A+++L + ++ + K+D Sbjct: 62 TLSGSSGGQAQRIRAQAQQIAD-TSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKID 120 Query: 138 SIAAALILQEVLDRISF 154 IAA++ LQ LDR Sbjct: 121 MIAASIFLQAWLDRQRA 137 >gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54] Length = 133 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L L+ +G E P R F + + R V DER +++ AQ++L Sbjct: 62 LALDADGGEQPATARCRRFANQLHGR-FGVAVELVDERGSSMEAQRLLGTHAADDAMAAA 120 Query: 135 KVDSIAAALILQEVLDR 151 ILQ LD+ Sbjct: 121 V--------ILQRYLDK 129 >gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1] gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1] gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT] gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1] gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT] Length = 133 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 G K IG A+SDP R A P L R T+T + S + T IIGLP+++NG+ G Sbjct: 2 GDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTIG 61 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 P+ ++F ++ R + + ++ DER +T A++ + D + K + A+I Sbjct: 62 PQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118 Query: 145 LQEVLDRIS 153 LQ+ LD + Sbjct: 119 LQDYLDETN 127 >gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis] gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC 23114] Length = 144 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTEN----IAAF 71 I ++DLGTK G AISDP A + ++L ++ I Sbjct: 2 RILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKVLHYLNKSEYQGSIGTI 61 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++G PL M+ S+ R + F + + V +P VF DER +T+ AQ+IL + KK Sbjct: 62 VLGYPLRMDLSKSQRTYMVERFGERL-KKVVDIPVVFQDERQSTIGAQEILQSAGWNTKK 120 Query: 132 RIQKVDSIAAALILQEVLDRISF 154 K DS+AA LIL++ L I + Sbjct: 121 SKSKKDSLAAQLILEDYLKGIKY 143 >gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium KB13] gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium KB13] Length = 161 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 2/153 (1%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M+ L DL + K + + DLG K+ G+A+ + + + K Q ++ Sbjct: 1 MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 + ++GLP N + S I++ + +P F +E ++ SA++ Sbjct: 61 QLVNEWQPIYLVLGLPSNRDSSANETTKFCLNTAKE-IEKNINLPIFFVNENYSSTSAEE 119 Query: 121 ILIDMNVSR-KKRIQKVDSIAAALILQEVLDRI 152 ++ D+ + K I VD IAA +ILQ + + Sbjct: 120 LIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152 >gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684] gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684] Length = 133 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D G+ R G A+SDP A P + R + L++ + + ++GLPL Sbjct: 2 RVLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 ++G++ + RAF + + +P +DER TTV A+++ + Sbjct: 62 GLSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRESE 112 Query: 137 DSIAAALILQEVL 149 DS AAA++L+ L Sbjct: 113 DSRAAAVLLEGWL 125 >gi|332530313|ref|ZP_08406259.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC 19624] gi|332040299|gb|EGI76679.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC 19624] Length = 136 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 8/140 (5%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + Q ++D G KR G+A+ + + A P+ + R + ++ I Sbjct: 1 MAVTAAQQTFLALDFGLKRTGVAVGNRLLKQAQPQATI-RAEGDARFTQIAERIREWQPD 59 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 A ++G+P + +G+ R F + R +P DER +T A I Sbjct: 60 ALVVGVPFHPDGAAHDNTERARKFARQLRGR-FGLPVHEVDERYSTTEA----IAEGGGG 114 Query: 130 KKRIQKVDSIAAALILQEVL 149 K+ D+ AA +IL++ L Sbjct: 115 KRFDA--DAGAACVILEQFL 132 >gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I] gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS] Length = 133 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL ++G E P R F + + + DER +++ AQQ+L Sbjct: 62 LPLTLDGQEQPASARARRFANQL-HGHFGLAVELVDERSSSMEAQQLLGTHADDDAVAAA 120 Query: 135 KVDSIAAALILQEVLDRIS 153 ILQ LD +S Sbjct: 121 V--------ILQRYLDTLS 131 >gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis] Length = 167 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 16/163 (9%) Query: 1 MSILLIEDL------VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54 M++L ++ L V ++P + +D+GT +G+A+SDP A P+ L+R + Sbjct: 1 MAVLTVKQLQSLYSKVAHIRP--RLLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLR 58 Query: 55 TALE--LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDE 111 L+ + AF++GLPL +G E + + F+H + ++ +P VF DE Sbjct: 59 PFKSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDE 118 Query: 112 RLTTVSAQ---QILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 +T A + + +R R + D AAA+ILQ LD Sbjct: 119 WGSTQMAMDDYRYQKKRDWNRGLRKK--DENAAAIILQSFLDS 159 >gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10] gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci 6BC] gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1] gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci 6BC] gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10] gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci 6BC] Length = 150 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78 +D G KRIGLA + + P F+ K + +LL I N++ ++G P+ Sbjct: 11 LGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIP 70 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137 M + + + +++ V + WDERL++ A+++L D +SRKKR K D Sbjct: 71 MQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTD 130 Query: 138 SIAAALILQEVLDRISFL 155 SIAA LIL L+ L Sbjct: 131 SIAANLILTSFLESSPHL 148 >gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822] gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50] gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis] gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 133 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPL ++G E P R F + + R + DER +++ AQQ+L Sbjct: 62 LPLTLDGQEQPASARARRFANQLHGR-FGLAVELVDERGSSMEAQQLLGTHAADDAVAAA 120 Query: 135 KVDSIAAALILQEVLDRIS 153 ILQ LD + Sbjct: 121 V--------ILQRYLDTLP 131 >gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase [Arabidopsis thaliana] gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana] gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein [Arabidopsis thaliana] Length = 170 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74 +D+G K +GLAISDP A P L+RKK A + + + +++ ++G Sbjct: 22 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVG 81 Query: 75 LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 P +N E V + F+ + ++ V + +WDERL++ + + +L +N+ + Sbjct: 82 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 139 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 +D +AA +ILQE LD + Sbjct: 140 EKTMLDKLAAVVILQEYLDYAN 161 >gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum DSM 7109] gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum DSM 7109] Length = 143 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 52/118 (44%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ++D+G+ RIG+A+SDP A P + ++ I + I+ Sbjct: 21 PGRGRRLALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIV 80 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 GLP+ + G+ + F ++ + +P DER++T++A Q VS KK Sbjct: 81 GLPVALRGNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKK 138 >gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium 1_1_47] gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium 1_1_47] Length = 144 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ L + + + D G KRIG+A+ + + A P + KK Q E+ ++ A Sbjct: 1 MERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPA 60 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 A ++G+P + +G F N ++ + +P V DER ++V A+ + Sbjct: 61 AVVVGVPRHKDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAESYHDADDDEP 119 Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153 AA+IL + L+++ Sbjct: 120 IDDEA------AAIILDQWLNKVP 137 >gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5] gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5] Length = 173 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G K++G+A+ + A L LL I +A ++GLPLN Sbjct: 25 ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVGLPLN 84 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFV--FWDERLTTVSAQQILIDMNVSRKKRIQ 134 M+GS F + R + +P + DERLT+V+A++I + + +R Sbjct: 85 MDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHER-A 143 Query: 135 KVDSIAAALILQEVL 149 +D I+A +++ Sbjct: 144 PIDDISACILMSTYF 158 >gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor kronotskyensis 2002] gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor kronotskyensis 2002] Length = 138 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76 I +D+G R+G+AISDP + A P + + EL NI +IG P Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYPL 60 Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L+ + + ++ I+ + V V WDER +T + +++ ID ++ K++ + Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IESRYNVEIVKWDERFSTKAVERV-IDEELNWKRKKK 117 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ LD Sbjct: 118 IIDKVAAVYILQGYLD 133 >gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 141 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G GL+I+DP ++FA + K + L I + I +IGLP Sbjct: 3 RILGIDYGKVITGLSITDPLQKFAFGLNAIPTKNLMSF---LAILIAKKPIKKIVIGLPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-IQKV 136 +N S + F+ + + V DER T+ A +I++ + +K+R + Sbjct: 60 TLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRRQKGLI 119 Query: 137 DSIAAALILQEVL 149 + I+A +ILQ L Sbjct: 120 NKISATIILQSYL 132 >gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae GPIC] gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae GPIC] Length = 163 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFI 72 K + ID G +RIGLA + + P + + ++L + I +++ + Sbjct: 7 KKEKTFLGIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVV 66 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131 +G P+ M + + + ++I V + WDERL++ A+++L D +SRKK Sbjct: 67 LGNPIPMQKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKK 126 Query: 132 RIQKVDSIAAALILQEVLDR 151 R K D+IAA LIL L+ Sbjct: 127 RKGKTDTIAATLILTSFLES 146 >gi|296136975|ref|YP_003644217.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12] gi|295797097|gb|ADG31887.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12] Length = 137 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G KRIG A+ + R A L + + + I ++GLPL Sbjct: 14 TVLGFDWGAKRIGTAVGNSLTRSATALRSLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + +G+ + F + + + +P DER T+V+A+ + VD Sbjct: 74 HPDGAAHDNTAHAQRFARQL-EGRFRLPVALVDERYTSVAAED----------DGAKDVD 122 Query: 138 SIAAALILQEVLDR 151 S AA LI+++ L + Sbjct: 123 SAAAQLIVEQYLQQ 136 >gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM 6725] gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM 6725] Length = 138 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76 I +D+G R+G+AISDP + A P + + EL NI +IG P Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYPL 60 Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L+ + + ++ I + V V WDER +T + +++ ID ++ K++ + Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IGSRYNVEIVKWDERFSTKAVERV-IDEELNWKRKKK 117 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ LD Sbjct: 118 IIDKVAAVYILQGYLD 133 >gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella excrementihominis YIT 11859] gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella excrementihominis YIT 11859] Length = 150 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 + ++ L + + + D G KRIG+A+ + + A P + KK Q E+ ++ Sbjct: 4 QSALERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDW 63 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 AA ++G+P + +G F N ++ + +P V DER ++V A+ + Sbjct: 64 QPAAVVVGVPRHKDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAESYHDADD 122 Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153 AA+IL + L+++ Sbjct: 123 DEPIDDEA------AAIILDQWLNKVP 143 >gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM 14884] gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM 14884] Length = 141 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIGLA D RFA R +L R + + +F E ++GLPL Sbjct: 2 KVVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +GS + V + R+ + DER TT AQ + + +++ ++D Sbjct: 62 RTDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRLD 119 Query: 138 SIAAALILQEVL 149 AA IL+ L Sbjct: 120 EAAAVAILETYL 131 >gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor hydrothermalis 108] gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor hydrothermalis 108] Length = 138 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76 I +D+G R+G+AISDP + A P + + EL +I +IG P Sbjct: 2 RILCLDMGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQRYSIEKVVIGYPL 60 Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L+ + + ++ I + V V WDER +T + +++ I+ ++ K++ + Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IKSRYNVEIVKWDERFSTKAVEKV-INGELNWKRKKK 117 Query: 135 KVDSIAAALILQEVLD 150 +D +AA ILQ LD Sbjct: 118 VIDKVAAVYILQGYLD 133 >gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens T118] gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118] Length = 156 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 12/133 (9%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q ++D G KR G A+ + R A P+ + + +++ + A ++G+P Sbjct: 33 QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAE-GDARFVKIALQLKEWQPDALVVGVP 91 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ R F + R +P DER TT A + R R Sbjct: 92 FHPDGAAHENTLRARRFARQLQGR-FKLPVFEVDERYTTTEA--------LGRGARDA-- 140 Query: 137 DSIAAALILQEVL 149 D++AA +IL++ L Sbjct: 141 DAMAACIILEQFL 153 >gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4] gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 177 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 ++KP I ++D G K++G+A+ + A L LL I +A Sbjct: 23 AIKP-HLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKV 81 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFV--FWDERLTTVSAQQILIDMNV 127 ++GLPLNM+GS F + R + +P + DERLT+V+A++I + Sbjct: 82 VVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGW 141 Query: 128 SRKKRIQKVDSIAAALILQEVL 149 + +R +D I+A +++ Sbjct: 142 IQNER-DPIDDISACILMSTYF 162 >gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916] gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916] Length = 157 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + + S+D+G KRIGLA DP P P + R + Q L + TT + A ++ Sbjct: 4 PKPRSVLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL+ G + + + + + +P + +E ++ +A + R Sbjct: 64 GLPLDDKGQRTAQAEHCERYGRRLA-QTLALPLAWVNEHSSSWAAGESRNLHG----DRS 118 Query: 134 QKVDSIAAALILQEVL 149 ++DS AAAL+L++ L Sbjct: 119 GRLDSEAAALLLEQWL 134 >gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601] gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. AS9601] Length = 153 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+G+PL+ G + + + ++ ++ +PF + +E +T + + Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GI 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ ++ LE G Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147 >gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 136 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G K+IG+A SD + A R+ +++ L + + +IGLP + Sbjct: 1 MCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTI 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + E F + +I + V DE L+T A L +S K + D I Sbjct: 61 DEQETEWCKVIIQFANKIIKK-CKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKI 119 Query: 140 AAALILQEVLDRISFLE 156 AA +ILQ LD+I+ ++ Sbjct: 120 AACIILQRTLDKINAIK 136 >gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera] Length = 224 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 2 SILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58 + L DL+K + +D+G K +GLA+SD + A P L+RKK A + Sbjct: 61 PVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATD 120 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116 S I+ ++A FI+G P N S P + + F+ ++ + V + +WDE T+ Sbjct: 121 FQSLISDLSLAGFIVGYPFNRQRS-SPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSK 179 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + + +L +N+ + +D AA ILQ LD ++ + Sbjct: 180 NVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNRI 218 >gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 169 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 2 SILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58 + L DL+K + +D+G K +GLA+SD + A P L+RKK A + Sbjct: 6 PVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATD 65 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116 S I+ ++A FI+G P N S P + + F+ ++ + V + +WDE T+ Sbjct: 66 FQSLISDLSLAGFIVGYPFNRQRS-SPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSK 124 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 + + +L +N+ + +D AA ILQ LD ++ + Sbjct: 125 NVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNRI 163 >gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1] gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1] Length = 142 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73 I +D+G+K IGLA S A L + + L FI ++ F+ Sbjct: 1 MSNILGLDVGSKTIGLASS--TGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVF 58 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRK 130 G P NMNGS G R F+ + + + DER TT A+ I+I+ +SR+ Sbjct: 59 GYPKNMNGSIGERAEMVDYFIEGFMVYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQ 118 Query: 131 KRIQKVDSIAAALILQEVLDRIS 153 K+ + D++AA LIL+ L++I Sbjct: 119 KQKENKDTLAAQLILETYLEKIK 141 >gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM 16511] gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM 16511] Length = 130 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 5/133 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 IA++D+G KRIG+AIS P R P+ + R+ Q A EL F+ + ++GLP Sbjct: 2 IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + SE R FV ++++ + + DE ++ A++ + R+KR ++DS Sbjct: 61 GS-SEEEMERRIRHFV-SLLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116 Query: 139 IAAALILQEVLDR 151 +AA +IL+ L+R Sbjct: 117 LAAQIILERWLER 129 >gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. NATL2A] gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. NATL2A] Length = 144 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + S+D+G KRIG+A DP P + R + E + I G PL Sbjct: 8 SVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG E + + + + + +P F +E +TV A++ + + ++D Sbjct: 68 DMNGMETKQSIRCKKYGIKLAK-CLKLPLAFINEHCSTVEAKEKFS----LKNDKTGRID 122 Query: 138 SIAAALILQEVL 149 S AAA++LQ+ L Sbjct: 123 SAAAAILLQQWL 134 >gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis] gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis] Length = 168 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALEL 59 I L DL+KS K N + +D+G K +GLAISD + A P L+RKK A + Sbjct: 6 PIALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDF 64 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVS 117 S I+ ++A F++G P + S P + F+ ++ + + + FWDE T+ + Sbjct: 65 QSLISELSLAGFVVGYPFDRQRS-TPDALHVKLFIDDLRKIGKLEGLKYTFWDECFTSKN 123 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + ++ +++ + +D AA ILQ LD ++ Sbjct: 124 VELLVQPLDLHPVEAKTIMDKFAAVGILQGYLDYVN 159 >gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca volvulus] Length = 136 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G K+IG+A SD + A RK +++ L + +IGLPL Sbjct: 1 MCLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKDLGYLNRVFKENEAGSVVIGLPLET 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 N + F M+ + V DE L+T A L VS K + D I Sbjct: 61 NRKSSEWYETIIQFATKMVKK-YKVNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119 Query: 140 AAALILQEVLDRISFLE 156 +A +ILQ LD+I+ ++ Sbjct: 120 SACIILQRTLDKINAIK 136 >gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath] gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus str. Bath] Length = 151 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 6/139 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 D G + IG+A+ A P L + + + I A ++ Sbjct: 8 SRGATYLGFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVV 67 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR- 132 GL +GSE P T F + + + +P DE LTT A+ R+K Sbjct: 68 GLSHQQDGSENPITAPTLRFCRQL-EGRYRLPVYTVDETLTT--AESRTHFYQRRRRKSV 124 Query: 133 --IQKVDSIAAALILQEVL 149 Q D +AA LILQ Sbjct: 125 EFEQVKDEMAAQLILQTWF 143 >gi|255535831|ref|YP_003096202.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium 3519-10] gi|255342027|gb|ACU08140.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium 3519-10] Length = 141 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 5/141 (3%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ I ++D G R G+A +D + A + K + L + N+ + Sbjct: 1 MRTMAQILAVDYGKARCGIAATDDFQIIASGLDTVETKNIFTF---LAGYFAANNVELVV 57 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +GLP ++ G+ F+ + V +DER T+ A + ++KKR Sbjct: 58 VGLPTDLKGNLSSIETDIAKFLEKFKTQFPTVKTERFDERFTSKMASFYISQSGKNKKKR 117 Query: 133 --IQKVDSIAAALILQEVLDR 151 +D ++A LILQ L++ Sbjct: 118 EEKGLIDKVSATLILQNFLEQ 138 >gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group] gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group] gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group] gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group] Length = 178 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 1 MSILLIEDLVKS-----LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55 M +L + L + + + +D+G+K +GLA+SD R A P L R K + Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60 Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111 A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120 Query: 112 RLTTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153 T+ + +L + + + D AA ILQ LD ++ Sbjct: 121 NFTSKCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 163 >gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa Temecula1] gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23] gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23] gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 155 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D+GT+RIG+A+ A + V L ++G Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131 PL + G + P AF + +R +P V DER ++V A R++ Sbjct: 69 DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127 Query: 132 RIQKVDSIAAALILQEVL 149 +D+IAAA+IL+ L Sbjct: 128 DADTLDAIAAAVILERWL 145 >gi|171463061|ref|YP_001797174.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226731636|sp|B1XT83|RUVX_POLNS RecName: Full=Putative Holliday junction resolvase gi|171192599|gb|ACB43560.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 147 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 14/145 (9%) Query: 13 LKPNQPI-----ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 LKP I + D GT+R+G+A+ + + P + ++ + Sbjct: 2 LKPMALITPITAMAFDYGTRRVGVAVGNSVTKAGEPLKTIAAPNSDTLFKDIEQLLAEWQ 61 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 ++G P + +G+ F + + R +P + DER T+ +++ + Sbjct: 62 PNQLVVGHPTHPDGAPHEMTAKAIRFGNQLHGR-FQLPVAWVDERYTS-----AVLEGD- 114 Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152 + +D+ +A LIL++ + Sbjct: 115 --AQMRDNLDAHSATLILEQYFSEL 137 >gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg] gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 148 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENI 68 + S+K + +D G KRIGLA + P + + TA L++ I + Sbjct: 1 MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127 + G PL M S V S + ++ + + WDERL++ A+++L D + Sbjct: 61 TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120 Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153 SRK+R DS+AA LIL LD Sbjct: 121 SRKQRKNSSDSLAATLILSSFLDSRK 146 >gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855] gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8] gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM 13855] gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8] Length = 143 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + +L + ID+GTKR+G+A++DP R FA P + L + + IA Sbjct: 1 MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTYA---PDEALDVLQALRDADGIA 57 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS- 128 ++G PL G+ A+V + + V DER T+ A+ +L + VS Sbjct: 58 RIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVSQ 117 Query: 129 -RKKRIQKVDSIAAALILQEVLDR 151 + +VD+ AAA+ILQ L+R Sbjct: 118 PGRYDKGRVDAAAAAVILQGFLNR 141 >gi|313207140|ref|YP_004046317.1| holliday junction resolvase yqgf [Riemerella anatipestifer DSM 15868] gi|312446456|gb|ADQ82811.1| Holliday junction resolvase YqgF [Riemerella anatipestifer DSM 15868] gi|315022462|gb|EFT35489.1| Putative Holliday junction resolvase [Riemerella anatipestifer RA-YM] Length = 137 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G R G+A +D + A + ++ L +I + A ++G Sbjct: 1 MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSF---LSEYIHNNAVEAVVVGY 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+++ G+ S F+ + + DER T+ A + ++K+R +K Sbjct: 58 PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSGKNKKQRQEK 117 Query: 136 --VDSIAAALILQEVLDRIS 153 +D I+A +ILQ L++ Sbjct: 118 GLIDKISATIILQNFLEQKR 137 >gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301] gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301] Length = 153 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+G+KRIGLA DP ++ P + R + Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+G+PL+ G + + + ++ ++ +PF + +E +T + + Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GI 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ ++ LE G Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147 >gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58] gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum E58] Length = 146 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78 +D G KR+GLA + + P + R K + L I +++ I+G P+ Sbjct: 11 LGVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIP 70 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVD 137 M G++ + A + + + WDERL++ A+++L D +SRK+R K D Sbjct: 71 MYGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTD 130 Query: 138 SIAAALILQEVLDRI 152 ++AA LIL L+R Sbjct: 131 TLAATLILSSFLERC 145 >gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23] gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23] Length = 135 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIGLA+ + G FA R +LVR+ + + LL F+ E +A I+GLPL Sbjct: 2 RLGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + E + V + R V WDER TT +A L ++ K+D Sbjct: 62 RTDLKESAQAKRVLPLVEALRAR--GVEVELWDERYTTKAAMARLRHAPRRVREDKGKLD 119 Query: 138 SIAAALILQEVLDR 151 ++A ++L+ L R Sbjct: 120 EMSAVVLLEGYLAR 133 >gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27] gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8] gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27] gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 135 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL Sbjct: 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + E + V + R V WDER TT AQ+ L ++ K+D Sbjct: 62 RTDLKESAQAGKVLPLVEALRAR--GVEVELWDERFTTKLAQERLKHAPKRLRRDKGKLD 119 Query: 138 SIAAALILQEVLDR 151 +AA ++L++ L R Sbjct: 120 ELAAVVLLEDYLAR 133 >gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c] gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 155 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D+GT+RIG+A+ A + V L ++G Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131 PL + G + P +AF + +R +P V DER ++V A R++ Sbjct: 69 DPLTLEGHDQPIRKQAQAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127 Query: 132 RIQKVDSIAAALILQEVL 149 +D+IAAA+IL+ L Sbjct: 128 DADTLDAIAAAVILERWL 145 >gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9215] gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9215] Length = 153 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+G KRIGLA DP ++ P + R K Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+G+PL+ G + + + ++ ++ +PF F +E +T + Sbjct: 61 TGFIVGIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRF----GI 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ ++ LE G Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147 >gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7 single-cell isolate TM7c] Length = 134 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +D+G KRIG+A++D G + A P + ++L EN ++G P Sbjct: 4 RLLCLDVGEKRIGVAVADLGVKIAIPLTTIEVDGTE--IEQILRLYGRENARTLVVGYPR 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N G + FV + + Y+ F DE LT+V A+Q L + +D Sbjct: 62 NQQGETTAQTVFVEEFVKPLEE---YINIEFQDESLTSVQAEQRLKSRG--QNYTKGDID 116 Query: 138 SIAAALILQEVLD 150 S AA +ILQ+ ++ Sbjct: 117 SEAATIILQDYME 129 >gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis] Length = 178 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 4/142 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74 + +D+G + +GLA+S+ A P L+RK+ + +L + ++ F+IG Sbjct: 22 GRLLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRFSLVGFVIG 81 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 PL + + + + FV + R + + +WDERLTT + + +L + + + Sbjct: 82 YPLPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKPLKIHPLQM 141 Query: 133 IQKVDSIAAALILQEVLDRISF 154 +D AA ILQ+ LD + Sbjct: 142 KHMMDKFAAVGILQDFLDNLQH 163 >gi|319795847|ref|YP_004157487.1| holliday junction resolvase yqgf [Variovorax paradoxus EPS] gi|315598310|gb|ADU39376.1| Holliday junction resolvase YqgF [Variovorax paradoxus EPS] Length = 141 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 13/138 (9%) Query: 13 LKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 + P+ Q + D G KR G+A + + A P+ + + ++ + I A Sbjct: 12 VPPHFQTFLAFDFGLKRTGVASGNRLLQSATPQATIKAE-GDARFAQVEARIKEWQPDAL 70 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 +IG+P + +G+ + F + R + DER +T A +S Sbjct: 71 VIGVPYHPDGAPHENTRRAQKFARQLRGR-FNLQVFEVDERYSTTEA--------LSSGA 121 Query: 132 RIQKVDSIAAALILQEVL 149 R D+ +A +IL++ L Sbjct: 122 RDA--DAASACIILEQFL 137 >gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836] gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836] Length = 152 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G RIG+A SDP A P + R +++ + ++GLP ++ Sbjct: 7 VALDIGDARIGVASSDPHGILATPVETVRR--GPGDLDRIVTLVADLEAFEIVVGLPRSL 64 Query: 80 NGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 NG EGP RA + R+V DER TTV+A+++L + KR Sbjct: 65 NGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRERGKKGSKRRAV 124 Query: 136 VDSIAAALILQEVLD 150 VD AA +ILQ LD Sbjct: 125 VDQAAAVVILQHALD 139 >gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter xylosoxidans A8] gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter xylosoxidans A8] Length = 133 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L L+ G E P R F + + R + DER +++ AQ++L Sbjct: 62 LALDAEGGEQPATARCRRFANQLHGR-FGLAVELVDERGSSMEAQRLLGTHAADDAMAAA 120 Query: 135 KVDSIAAALILQEVLDRISF 154 ILQ LD + Sbjct: 121 V--------ILQRYLDTLPA 132 >gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii ATCC 43553] gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii ATCC 43553] Length = 136 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + D G K+IG+AI + R A P + + + + + ++G Sbjct: 5 PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L L+ +G E R F + + R + DER +++ AQ++L Sbjct: 65 LALDADGGEQAATARCRRFANQLHGR-FGIAVELVDERGSSMEAQRLLGTHAADDAMAAA 123 Query: 135 KVDSIAAALILQEVLDRISF 154 ILQ LD + Sbjct: 124 V--------ILQRYLDTLPA 135 >gi|237654352|ref|YP_002890666.1| Holliday junction resolvase-like protein [Thauera sp. MZ1T] gi|237625599|gb|ACR02289.1| Holliday junction resolvase YqgF [Thauera sp. MZ1T] Length = 168 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 +L + D G RIG+A + A + + + I A Sbjct: 22 DTLPARGTVLGFDFGLARIGVASGELETGLASALTTVHAEANDARFAAIARLIAEWRPVA 81 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR- 129 ++G+P +++G E R F + + R +P DERL++V+A+ L + Sbjct: 82 LVVGIPTHLDGREHELTARCRRFANQLHGRHA-LPVFTADERLSSVAAEAELAEAGRKDW 140 Query: 130 KKRIQKVDSIAAALILQEVLDRISF 154 ++R +D+ AA ++LQ LD Sbjct: 141 RERKAALDAAAARILLQTFLDTRRH 165 >gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4] gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4] gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169] gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis 46P47B1] gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis 103P14B1] gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1] gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis 12P80B1] gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8] gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7] gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72] gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E] gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis 101P30B1] Length = 158 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D G K++G+A+ + A P L LL I I ++GLPLNM Sbjct: 8 LALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNM 67 Query: 80 NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +G+E F + +R+ V +DERL++ A+ I +D + Sbjct: 68 DGTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALDNGWI-ASSSEP 126 Query: 136 VDSIAAALILQEV 148 +D IAA L+L Sbjct: 127 IDDIAACLLLDSY 139 >gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM 10331] gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM 10331] Length = 138 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 +DLGTKRIG+A+ A P + + + L + + + ++GL Sbjct: 6 GGRALGVDLGTKRIGVAV--AEGSLALPLEVIDARGPWR--ARLAELVASVGASVVVVGL 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ ++GSEG R + + + + VP VF DERL++ +A++ L V + R Sbjct: 62 PIGLDGSEGRAAARVRQWSEGLAE-HLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGA 120 Query: 136 VDSIAAALILQEVL 149 VD+ AA IL+ L Sbjct: 121 VDAFAATEILERWL 134 >gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis D/UW-3/CX] gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis A/HAR-13] gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis B/Jali20/OT] gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 6276] gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 6276s] gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX] gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13] gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis B/Jali20/OT] gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/9768] gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/11222] gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/11074] gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis G/9301] gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC] gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC] Length = 148 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFI 72 K Q ID G KRIGLA + P + R +T TA L+S I + + Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVV 64 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131 G PL M + V S + +I + + WDERL++ A+++L D ++RK+ Sbjct: 65 FGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQ 124 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 R DS+AA LIL LD Sbjct: 125 RKNPSDSLAATLILSSFLDSRK 146 >gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon] gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12] gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon] gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1] gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12] Length = 155 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P+ + D+GT+RIG+A+ A + V L ++G Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131 PL + G + P AF + +R +P V DER ++V A R++ Sbjct: 69 DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127 Query: 132 RIQKVDSIAAALILQEVL 149 +D+IAAA+IL+ L Sbjct: 128 DADTLDAIAAAVILERWL 145 >gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg] gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum Weiss] gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum MopnTet14] Length = 145 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 2/143 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAF 71 +K + +D G KRIGLA + P + + TA L++ I + Sbjct: 1 MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130 + G PL M S V S + ++ + + WDERL++ A+++L D +SRK Sbjct: 61 VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120 Query: 131 KRIQKVDSIAAALILQEVLDRIS 153 +R DS+AA LIL LD Sbjct: 121 QRKNSSDSLAATLILSSFLDSRK 143 >gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 434/Bu] gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70] gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70s] gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis D(s)2923] gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis L2tet1] gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis] gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu] gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis Sweden2] gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis E/150] gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis E/11023] Length = 148 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFI 72 K Q ID G KRIGLA + P + R +T TA L+S I + + Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVV 64 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131 G PL M + V S + +I + + WDERL++ A+++L D ++RK+ Sbjct: 65 FGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQ 124 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 R DS+AA LIL LD Sbjct: 125 RKNSSDSLAATLILSSFLDSRK 146 >gi|121997730|ref|YP_001002517.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1] gi|121589135|gb|ABM61715.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1] Length = 142 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 P + D G + IG+A+ + A L + + + A ++ Sbjct: 4 PPGGTLLGFDPGARHIGVAVGEALLGTARGLTTLPARHGQPDWEAVSELLAQWTPEALVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 GLP + +GS+ R + R +P DERL++ A++ L R Sbjct: 64 GLPSHADGSDADSTELARRLAGRLHGR-FGLPVHTVDERLSSHVAEERLDPRQRQR 118 >gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. F] Length = 142 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 8/140 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFIIG 74 ++D+G+K +G+A D + A P + + + L+ + + + F+IG Sbjct: 4 VALDVGSKTLGIATGDGEFKIASPYCVISFNQY--DFKQCLAELKEKTASFFYDFKFVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR + Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120 Query: 135 KVDSIAAALILQEVLDRISF 154 K+D +AA +ILQ D + Sbjct: 121 KIDKLAAFVILQSFFDDDRY 140 >gi|241764785|ref|ZP_04762793.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN] gi|241365715|gb|EER60411.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN] Length = 143 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A + A P+P + + ++ I A +IG+P Sbjct: 19 QTFLAFDFGLKRTGVATGSRLLKSATPQPTIKAE-GDARFAQVAQRIKEWQPDALVIGVP 77 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R + DER +T A I Sbjct: 78 YHPDGASHENTERALKFGRQLRGR-FGLQVFEVDERYSTTEA----IASGAKDA------ 126 Query: 137 DSIAAALILQEVL 149 D+ +A +IL++ L Sbjct: 127 DAASACIILEQFL 139 >gi|260220095|emb|CBA27290.1| Putative Holliday junction resolvase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 6 IEDLVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 + D + P + D G KR G+A+ + R A P+ + + + + + Sbjct: 11 MSDATPLVPPAFTTFIAFDFGLKRTGVAVGNRLMRTAQPQGSIHAE-GNARFDGVAAKLK 69 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 A +IG+P + +G+ + F + R + DER +T A I Sbjct: 70 EWQPDAIVIGVPYHPDGAPHENTARAKKFGRQLQGR-FGLQVFEVDERYSTTEA----IA 124 Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149 D+++A +IL++ L Sbjct: 125 SGAKDA------DAMSACIILEQFL 143 >gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae CWL029] gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae J138] gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae TW-183] gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029] gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138] gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183] gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae LPCoLN] Length = 151 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75 + ID G KRIGLA + P + K + +A L I + NI ++G Sbjct: 8 KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 67 Query: 76 PLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133 PL M G + + V + WDERL++V A+++L D +SRK R Sbjct: 68 PLPMQKGLYSSLQEEVSLLAEEL-KKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRK 126 Query: 134 QKVDSIAAALILQEVLDRIS 153 K DS+AA LIL LD + Sbjct: 127 GKTDSLAATLILTSFLDSLP 146 >gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma australiense] gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma australiense] Length = 140 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77 +DLG K +G+A+S A L + Q L I I I+G P Sbjct: 1 MGLDLGEKTLGIALS-ETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPK 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MN G + + F + V + WDERL+TV + +IL N +KK D Sbjct: 60 HMNNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKD 119 Query: 138 SIAAALILQEVLD 150 IAA +ILQ LD Sbjct: 120 VIAATIILQNYLD 132 >gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus S26/3] gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3] Length = 150 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 20 ASIDLGTKRIGLA-------ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +D G +RIGLA IS P A K + TA L+ I ++ + Sbjct: 11 LGVDYGERRIGLAYAAYPLGISLPIGFIATG------KTLEATAKLLVGIIQERRVSTVV 64 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131 +G PL M + + + +++ V + WDERL++ A+++L D +SRKK Sbjct: 65 LGNPLPMQKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKK 124 Query: 132 RIQKVDSIAAALILQEVLDRISFLES 157 R K DSIAA LIL L+ L S Sbjct: 125 RKGKTDSIAATLILTSFLEHSPRLPS 150 >gi|326315675|ref|YP_004233347.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372511|gb|ADX44780.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 150 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A+ R A P+ + + + + A ++G+P Sbjct: 25 QSFLAFDFGAKRTGVAVGTRMLRTATPQATIRAEGADARFAAVAERLRDWQPDALVVGVP 84 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R +P DER +T A + Sbjct: 85 YHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEAHAGGAKDADAA------- 136 Query: 137 DSIAAALILQEVLDRIS 153 +A +IL++ L ++ Sbjct: 137 ---SACIILEQFLRQLP 150 >gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A] gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. NATL1A] Length = 144 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + S+D+G KRIG+A DP P + R + E + I G PL Sbjct: 8 SVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +MNG E + + + + + +P F +E +T+ A++ + + ++D Sbjct: 68 DMNGMETKQSIRCKKYGIKLAK-CLKLPLAFINEHCSTLEAKEKFS----LKNDKTGRLD 122 Query: 138 SIAAALILQEVL 149 S AAA++LQ+ L Sbjct: 123 SAAAAILLQQWL 134 >gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae AR39] gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] Length = 154 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75 + ID G KRIGLA + P + K + +A L I + NI ++G Sbjct: 11 KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 70 Query: 76 PLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133 PL M G + + V + WDERL++V A+++L D +SRK R Sbjct: 71 PLPMQKGLYSSLQEEVSLLAEEL-KKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRK 129 Query: 134 QKVDSIAAALILQEVLDRIS 153 K DS+AA LIL LD + Sbjct: 130 GKTDSLAATLILTSFLDSLP 149 >gi|239817577|ref|YP_002946487.1| Holliday junction resolvase-like protein [Variovorax paradoxus S110] gi|239804154|gb|ACS21221.1| Holliday junction resolvase YqgF [Variovorax paradoxus S110] Length = 153 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 12/137 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A + A P+ + + ++ + I A ++G+P Sbjct: 29 QSFLAFDFGLKRTGVASGNRLLGAATPQATIKAE-GDARFAQVEARIKEWQPDALVVGVP 87 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ + F + R + DER +T A + Sbjct: 88 YHPDGAPHENTRRAQKFARQLRGR-FNLQVFEVDERYSTTEA----LASGARDA------ 136 Query: 137 DSIAAALILQEVLDRIS 153 D+ +A +IL++ L I Sbjct: 137 DAASACIILEQFLRSIP 153 >gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1] Length = 136 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E + + F I ++ +E +T A+ L ++ S+K KV Sbjct: 63 LDTQNFETDITKAAKDFAKE-IQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus ATCC 53653] gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus ATCC 53653] Length = 124 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 49/116 (42%) Query: 45 PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 + + + L + + +IGLP ++NG EGP R F + R V Sbjct: 2 ETVPGRDIPAAHKRLAAIVAEYEPIEVVIGLPRSLNGREGPAAAKVRTFARELARRVQPV 61 Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 DER+TTV+A L VS KK VD AA +ILQ L+ + G Sbjct: 62 SVRLVDERMTTVTAAHGLRASGVSSKKGRSVVDQAAAVVILQSALETERASGRAPG 117 >gi|289209567|ref|YP_003461633.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix] gi|288945198|gb|ADC72897.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix] Length = 130 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + + D G +RIG+A+ + A L + + ++ F++G P Sbjct: 3 LLAFDYGRRRIGIAVGEELTGAARGLRTL-NTDSPELWPVIDRLVSEWAPEGFVVGWPTQ 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G P RAF + + + P ++DE LT+ A++ R + +D+ Sbjct: 62 ADGKPTPLAKRIRAFGAAL-EARYNQPVYWYDEHLTSHLARER-----SGRGRHDPGLDA 115 Query: 139 IAAALILQEVL 149 AAA+IL+ Sbjct: 116 HAAAVILEGWF 126 >gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM 6946] gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM 6946] Length = 135 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 7/135 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + IAS+D+G KRIG+A+ P+ ++RK Q A E+ +F+T I ++GL Sbjct: 1 MKKIASLDVGLKRIGVALCLASG-IVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGL 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + SE FV + V+ DE +++ A++++ + R+KR K Sbjct: 60 PKGGS-SEEEMKRRITHFVSLLA---FSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGK 113 Query: 136 VDSIAAALILQEVLD 150 +DSIAA +IL+ LD Sbjct: 114 IDSIAAKVILERYLD 128 >gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone HF10-88D1] Length = 153 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 6/152 (3%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+ Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+G+PL+ G + + + ++ R++ +PF + +E +T + Sbjct: 61 TGFIVGIPLDEEGQMTTQAIDCKKYGQ-LLSRELMLPFSYVNEHSSTWESSYRF----GI 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS +A +IL++ + LE G Sbjct: 116 KKDKSGLIDSFSAKIILEQWIAEGPELEEIAG 147 >gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9312] gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT 9312] Length = 153 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S D+G KRIGLA DP ++ P + R + + + + I N+ Sbjct: 1 MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+GLPL+ G P+ + ++ ++ +PF + +E +T + Sbjct: 61 TGFIVGLPLDEKGKMTPQAIDCMNYGQ-LLSNELKLPFSYVNEHSSTWESSNRF----GI 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS AA +IL++ + LE G Sbjct: 116 KKDKSGLIDSFAAKVILEQWIKEGPELEELAG 147 >gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM 12804] gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii] Length = 131 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 P + + + D G K+IG+AI + R A P + + + + ++G Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRVVVG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L L +G E P R F + + R + DER +++ AQ++L Sbjct: 62 LALASDGGEQPATARCRRFANQLRGR-YGLAVELVDERGSSMEAQRLLGTHAPDDAVAAA 120 Query: 135 KVDSIAAALILQEVLDRIS 153 ILQ LD + Sbjct: 121 V--------ILQRYLDALP 131 >gi|120609602|ref|YP_969280.1| Holliday junction resolvase-like protein [Acidovorax citrulli AAC00-1] gi|120588066|gb|ABM31506.1| Holliday junction resolvase YqgF [Acidovorax citrulli AAC00-1] Length = 150 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A+ R A P+ + + + + A ++G+P Sbjct: 25 QSFLAFDFGAKRTGVAVGSRLLRAASPQATIRAEGADARFAAVAERLREWQPDALVVGVP 84 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R +P DER +T A + Sbjct: 85 YHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEAHAGGAKDADAA------- 136 Query: 137 DSIAAALILQEVLDRIS 153 +A +IL++ L ++ Sbjct: 137 ---SACIILEQFLRQLP 150 >gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp. novicida U112] gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112] gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] Length = 136 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E + + F + ++ +E +T A+ L ++ S+K KV Sbjct: 63 LDTQNFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis Fe/C-56] gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56] Length = 150 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 14 KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAF 71 + I +D G +RIGLA + + P F+ K + TA L I ++ Sbjct: 4 PKAKKIFLGVDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCV 63 Query: 72 IIGLPLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129 ++G P+ M G + + ++I +V V WDERL++ A+++L D +SR Sbjct: 64 VLGNPIPMQIGQKSSLQEEILK-ISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSR 122 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 K+R K DS+AA LIL L+ Sbjct: 123 KQRKGKTDSVAATLILTNFLES 144 >gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp. tularensis WY96-3418] gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 136 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E S + F + ++ +E +T A+ L ++ S+K KV Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp. holarctica LVS] gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp. holarctica OSU18] gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp. holarctica FSC200] gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp. holarctica 257] gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp. holarctica FSC022] gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp. holarctica URFT1] gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp. holarctica URFT1] gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp. holarctica 257] gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp. holarctica FSC022] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E S + F + ++ +E +T A+ L ++ S+K KV Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|332183969|gb|AEE26223.1| Putative Holliday junction resolvase [Francisella cf. novicida 3523] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + I+GLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIVGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E + + F + R +E +T A+ L ++ S+K KV Sbjct: 63 LDTQDFETDITKAAKDFAKEIQHR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 117 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 37 GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96 + A+ + K + L S++ E + +IG P+ ++G+ FV Sbjct: 1 MQFIANGLTTVETKDLFDF---LSSYVKQEEVERIVIGKPMQLDGNPSENFARVENFVGR 57 Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV---DSIAAALILQEVLDRIS 153 +P V++DER T+V A + +++ V +K R + D I+A +ILQ+ ++ Sbjct: 58 WRKSHPAIPIVYYDERFTSVLAHRAILESGVKKKTRRENKGLADEISATIILQDYMNSKK 117 >gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa] gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa] Length = 170 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 2 SILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALE 58 + L +L+K+ NQ +D+G K +GLA+SDP + A P L+RKK + A + Sbjct: 6 PLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATD 65 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116 S I+ ++ FI+G P + P + FV ++ + V F +WDE T+ Sbjct: 66 FQSLISELSLGGFIVGYPFDRQ-RGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSK 124 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + + ++ +++ +D AA ILQ LD ++ Sbjct: 125 NVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVN 161 >gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08] Length = 134 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91 A SD A P + + + L + I+GLP+ +NG+E R Sbjct: 2 AASDRDAILAFPVETV--QTANRPMQRLAEIVAEYEPVEVIMGLPVALNGTEQLAARDIR 59 Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 + + +P + DER+TT +A + L D + +++ +D AA IL++VL++ Sbjct: 60 DAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQAAAVAILEDVLEQ 119 Query: 152 IS 153 + Sbjct: 120 VR 121 >gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978] Length = 128 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 30 GLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 G+AI A+P P V K +LL + FI+GLPLNM+ SE Sbjct: 2 GMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELSTR 61 Query: 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148 R F + + + DERLTT A++ L + + DS AAAL++Q Sbjct: 62 ARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQSW 119 >gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. R(low)] gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. R(low)] gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str. R(high)] Length = 142 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 8/140 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFIIG 74 ++D+G++ +G+A D + A P + + + L+ + + + F+IG Sbjct: 4 VALDVGSRTLGIATGDGEFKIASPYCVISFNQY--DFRQCLAELKEKTASFFYDFKFVIG 61 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 +P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR + Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120 Query: 135 KVDSIAAALILQEVLDRISF 154 K+D +AA +ILQ D + Sbjct: 121 KIDKLAAFVILQSFFDDDRY 140 >gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp. mediasiatica FSC147] gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 136 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E S + F + ++ +E +T A+ L + S+K KV Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEF-KSKKISHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC 51756] gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC 51756] Length = 148 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 P ID G++RIGLAI P + L + A ++GL Sbjct: 11 GPWLGIDYGSRRIGLAILAHLDIAPRPLGTVANGGGGPDWPALEKVLAQWAPVACVVGLT 70 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +G+E R F + R +P ++ DERL++V+A L + + ++++ + Sbjct: 71 ARADGTESAVARGARHFAAALSQR-YGLPILWQDERLSSVTAAVRLREASPRKRRQRLAL 129 Query: 137 DSIAAALILQEV 148 D +AA IL+ Sbjct: 130 DPLAACEILRGF 141 >gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 136 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIGLA + A P + +EL + N + +IGLP Sbjct: 3 QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E + + F + +R +E +T A+ L ++ S+K KV Sbjct: 63 LDTQDFETDITKAAKDFAKEVKER-YKRNVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K] gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K] Length = 144 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77 IDLG R G AISD + + P ++K LE+ + I +IGLP+ Sbjct: 4 LGIDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIGLPI 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +N + F ++ ++++ +P F +E ++V A + + + KKR VD Sbjct: 64 KINNEKTKSTIFVENFKKHL-EKEINLPIFFVNEYNSSVLANLSINE--MKSKKRKTIVD 120 Query: 138 SIAAALILQEVLDR 151 I+A +IL + L+ Sbjct: 121 KISAQIILNDFLNN 134 >gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays] gi|194697900|gb|ACF83034.1| unknown [Zea mays] Length = 174 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%) Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54 M +L E+L + + + +D+G+K +G+AISD R A P L R K Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNI 60 Query: 55 T--ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWD 110 A + + ++ +IA F++G P + G + + + +P+ +WD Sbjct: 61 NLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQV-SLAGELCKTGKLDDLPYAYWD 119 Query: 111 ERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153 E T+ + +L +N+ D AA ILQ LD ++ Sbjct: 120 ENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 163 >gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group] Length = 180 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%) Query: 1 MSILLIEDLVKS-----LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55 M +L + L + + + +D+G+K +GLA+SD R A P L R K + Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60 Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111 A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120 Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153 T+ + +L + + + D AA ILQ LD ++ Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165 >gi|88705483|ref|ZP_01103194.1| Holliday junction resolvase [Congregibacter litoralis KT71] gi|88700573|gb|EAQ97681.1| Holliday junction resolvase [Congregibacter litoralis KT71] Length = 121 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91 A+ + P L + ++ + +IG PLNM+G+ R Sbjct: 2 AVGNSALGTTQPLAILRARDGQPDWTQVAALCKEWEPDLLLIGDPLNMDGTVSDFAQRAR 61 Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 F + + ++ + DERL++ +Q + S VD +AA LIL++ L Sbjct: 62 KFARRL-EGRLGIAVEMVDERLSSFEVKQQQREAGHSGDYHESPVDDLAAELILKDWL 118 >gi|160897026|ref|YP_001562608.1| Holliday junction resolvase-like protein [Delftia acidovorans SPH-1] gi|160362610|gb|ABX34223.1| Holliday junction resolvase YqgF [Delftia acidovorans SPH-1] Length = 152 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 11/133 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G A+ R A+P P + + + I A +IG+P Sbjct: 27 QSFVAFDFGAKRTGCAVGTRMLRSANPLPTIRAEAGEARLAQAGERIKEWQPDALVIGVP 86 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ + F + R +P DER +T A + Sbjct: 87 YHPDGNAHENTARAKKFGRQLKSR-FGLPVYEVDERYSTTEALAGGARDADAA------- 138 Query: 137 DSIAAALILQEVL 149 +A +IL++ L Sbjct: 139 ---SACIILEQFL 148 >gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP] gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 146 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 4/135 (2%) Query: 20 ASIDLGTKRIGLAISDPG-RRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLP 76 ++DLGTK G AISDP FA P ++ + +L + I+G P Sbjct: 8 IALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVINKLKHYEKKYEFDTIILGYP 67 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L M G+ R F ++ + V DERL+TV A+ +L + N+S+ K +K Sbjct: 68 LRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQSKIKEKK 126 Query: 137 DSIAAALILQEVLDR 151 DS+AAAL+L L+ Sbjct: 127 DSMAAALLLNYYLNN 141 >gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group] Length = 180 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%) Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55 M +L + L + + + + +D+G+K +GLA+SD R A P L R K + Sbjct: 1 MRLLKADQLFRKVIDGGSRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60 Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111 A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120 Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153 T+ + +L + + + D AA ILQ LD ++ Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165 >gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946] gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946] Length = 135 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +A++D+G RIGLA+ + G +A R +LVR+ L L +F E +A I+GLPL Sbjct: 2 KVAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G+ + V + R+ + DER TT Q L + ++ K+D Sbjct: 62 RTDGTPSAQAARVLELVRAL--REAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKLD 119 Query: 138 SIAAALILQEVLDRIS 153 AA +L+ L+R Sbjct: 120 EAAAVALLESYLERAR 135 >gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG] gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG] Length = 136 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG+A + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E + + F + ++ +E +T A+ L ++ S+K KV Sbjct: 63 LDTQDFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|124265899|ref|YP_001019903.1| Holliday junction resolvase-like protein [Methylibium petroleiphilum PM1] gi|124258674|gb|ABM93668.1| putative Holliday junction resolvase [Methylibium petroleiphilum PM1] Length = 136 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%) Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 + + + +P Q + + D G KR G+A + R A P + + + I Sbjct: 1 MPEPAGAPQPLQTLLAFDFGLKRTGVATGNTLTRSAQPLRTVAAE-GDARFDAIAKLIAE 59 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 AA ++G+P + +G+ + F + R +P DER +T A Sbjct: 60 WQPAALVVGVPFHPDGAPHDNTRRAQRFARQLHGR-FRLPVHEVDERWSTTEA 111 >gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp. novicida GA99-3549] gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549] Length = 138 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + +ID G RIG+A + A P + +EL I N + IIGLPL Sbjct: 6 SLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPL 65 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + E + + F + ++ +E +T A+ L ++ S+K KVD Sbjct: 66 DTQDFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKVD 123 Query: 138 SIAAALILQEVL 149 ++AA +IL+ + Sbjct: 124 ALAACVILETWM 135 >gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515] gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. MIT 9515] Length = 151 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ++ I S+D+GTKRIGLA D + P L R+K + S I N+ FI+ Sbjct: 6 PKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNLTGFIV 65 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL+ G + + + + + + +PF F +E +T ++ V +K + Sbjct: 66 GLPLDDKGRMTSQAFDCKTYGEYLFNE-LKLPFSFVNEHSSTWESENRF---GV-KKDKS 120 Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160 +DS++A +IL++ + L+ G Sbjct: 121 GLIDSLSAKVILEQWIQEGPELKELMG 147 >gi|319940853|ref|ZP_08015192.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis 3_1_45B] gi|319805735|gb|EFW02516.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis 3_1_45B] Length = 141 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 L L + + D G R G+A+ + R A P L + + ++ Sbjct: 5 LETFLSEPGTVLAFDFGLARTGVAVGNTVTRTAEPLVILDASTNESRWQSIEALMSEWKP 64 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++G+P +G+ F + + ++ DER ++V Sbjct: 65 KFLVVGVPRLGDGNPSTLTARCERFARQL-GGRYHLRVFTVDERFSSVEV---------- 113 Query: 129 RKKRIQKVDSIAAALILQEVL 149 + +D AAA+IL++ Sbjct: 114 -AQGRDHIDDRAAAVILEQFF 133 >gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279] gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279] Length = 136 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIGLA+ + G +A R +LVRK + L +F E F++GLPL Sbjct: 2 RVVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G + +A V M +R + DER TT Q L ++ K+D Sbjct: 62 RTDGRPSAQAERVQALVEAMRER--GMQLELLDERYTTKLGQNRLKHAPKRIRQEKGKLD 119 Query: 138 SIAAALILQEVLDRI 152 AA +L+ L R+ Sbjct: 120 EAAAIALLESYLARV 134 >gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct] Length = 184 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG++ + A P + +EL I N + IIGLP Sbjct: 42 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E S + F + ++ +E +T A+ L ++ S+K KV Sbjct: 102 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 159 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 160 DALAACVILETWM 172 >gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1] gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1] Length = 123 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID GTKRIGLA+ D + P + K L + I ++G PL Sbjct: 2 ILGIDYGTKRIGLALGDKHLKIYKPFKII--KNDKNLIQTLKHIVKAYKIELIVLGYPLT 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G EG R + F ++ +++ + V DER TT A+ + + +++D Sbjct: 60 PSGKEGQRAKKVKKFYE-LLKKELNIDIVLQDERYTTFEAKSLSDE---------KEIDH 109 Query: 139 IAAALILQEVLDRI 152 I+A +IL+E + + Sbjct: 110 ISAYIILKEYAENL 123 >gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp. tularensis FSC198] gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp. tularensis NE061598] Length = 136 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + +ID G RIG++ + A P + +EL I N + IIGLP Sbjct: 3 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ E S + F + ++ +E +T A+ L ++ S+K KV Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120 Query: 137 DSIAAALILQEVL 149 D++AA +IL+ + Sbjct: 121 DALAACVILETWM 133 >gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311] gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311] Length = 158 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ++ + S+D+G KRIGLA D P P L+R+ Q L T + ++ Sbjct: 3 PSSRSMLSLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVV 62 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL+ G + + + + + +P +E ++ +A + R Sbjct: 63 GLPLDAAGQFTEQAAHCQRYGQRLA-MALKLPLALVNEHSSSWAAAERYGLQG----DRS 117 Query: 134 QKVDSIAAALILQEVL 149 ++DS AA+L+L++ L Sbjct: 118 GRLDSAAASLLLEQWL 133 >gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter proteolyticus DSM 5265] gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM 5265] Length = 137 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 7/133 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPL 77 I ++D G KRIG+A SD +A P L + T+ +EL ++GLP Sbjct: 2 IVAVDFGLKRIGMARSDDSETWAFPHKTLEGNDLETKLIIELKKI----GPRVVVLGLPR 57 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+EG + RA + D V FWDERLT+ + K KVD Sbjct: 58 NMDGTEGEMAVAVRALGQRLED--VGFTVDFWDERLTSRLVSRQDPRSLKKAIKDKGKVD 115 Query: 138 SIAAALILQEVLD 150 ++A LILQE ++ Sbjct: 116 LMSAVLILQEYIN 128 >gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1] gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 128 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +A+ID+G KRIG AI R P+ ++RK Q A +++SF+ I ++GLP Sbjct: 2 KLAAIDVGLKRIGTAIC-LDGRIVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLPK 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + SE + FV + ++ +P V+ DE+ ++ A+++ R K+ K+D Sbjct: 61 GGSSSE-EMERRIQHFVSLL---ELDIPVVYQDEQGSSFEAKEM--TQGQFRHKKDGKID 114 Query: 138 SIAAALILQEVL 149 SIAA +IL+ L Sbjct: 115 SIAAKIILERHL 126 >gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera] Length = 679 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLA+S P L + + L+LL E + FIIGLP++ Sbjct: 513 LGVDLGMSRTGLALS--KGFSVRPLSVLKLR-GQKLELQLLEIAGREEVDEFIIGLPVSD 569 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ + R DE T+ A ++IDM S+ R ++D Sbjct: 570 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 629 Query: 138 SIAAALILQEVL 149 + AA ++L+ Sbjct: 630 AYAAMMVLERYF 641 >gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica] Length = 170 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 2 SILLIEDLVKSLK-PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALE 58 + L +DL+K+ + +D+G K +G+A+SD + A P L+RKK + A + Sbjct: 6 PLNLFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAAD 65 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116 S I+ ++ FI+G P + P + F+ ++ + + + +WDE T+ Sbjct: 66 FQSLISELSLVGFIVGYPFDRQ-KGTPDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSK 124 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + + +L +N+ + +D AA ILQ LD ++ Sbjct: 125 NVELLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVN 161 >gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM 14977] gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM 14977] Length = 133 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D+G RIG+A+++ GR A R ++ R+ + + E ++GLP Sbjct: 2 LGLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRT 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G EG + + + F DER TT A Q L + ++++ ++D Sbjct: 62 GGEEG--AQAAKVRAFAAALEAAGLEVRFVDERFTTRVAAQALAHLPRKKRQQKGRLDEA 119 Query: 140 AAALILQEVLDR 151 AA IL+ L+R Sbjct: 120 AAVAILETYLER 131 >gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa] gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa] Length = 254 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+A+S P L + + L LL E + FIIGLP + Sbjct: 92 LGVDLGLSRSGVALS--KGFTVRPLTVLELR-GQKLELRLLEIAENEEVDEFIIGLPKSW 148 Query: 80 NGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ + DE T+ A +IDM +++ R +KVD Sbjct: 149 DGKETPQSNKVRSVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVD 208 Query: 138 SIAAALILQEVL 149 + AA ++L+ Sbjct: 209 AYAAVMVLERYF 220 >gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans SRS30216] gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans SRS30216] Length = 188 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78 ++D+G+ R+GLA DP A P LVR E+ + ++GLPL+ Sbjct: 7 LAVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEIVLGLPLS 66 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GSEGP + ++ VP DERL+TV A + L + K+ Sbjct: 67 LDGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQ 119 >gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563] gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563] Length = 141 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +D G K+ G A D + P + + L+ I +NI + GLPL+ Sbjct: 2 VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E R F ++ V V VF DE T+ A IL + + + D Sbjct: 62 DEGKESEWCSEIRRFSDFLLK-SVKVNVVFVDEYGTSKEADYILR--GRKKNVKKKANDL 118 Query: 139 IAAALILQEVLDRISF 154 IAAALIL+ L+ ++ Sbjct: 119 IAAALILENYLNVLNM 134 >gi|221065221|ref|ZP_03541326.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1] gi|220710244|gb|EED65612.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1] Length = 170 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 11/133 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q D G KR G A + A+P P + + I A +IG+P Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIRADGADARLAAVEKLIREWQPNALVIGVP 104 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R +P DER +T A + Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156 Query: 137 DSIAAALILQEVL 149 +A +IL++ L Sbjct: 157 ---SACIILEQFL 166 >gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus] Length = 258 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 12/161 (7%) Query: 2 SILLIEDLVKSLK----PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57 +IL +VK P+ +D+ G+A+SD + A P + R++ T+ Sbjct: 79 TILTAAGMVKLCGLPGNRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLD 138 Query: 58 ------ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWD 110 +L + + ++G PL+ +G + F+ + + KV +P +D Sbjct: 139 PALVIGKLREIVEDCSACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFD 198 Query: 111 ERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 ER+T+V A+ IL D + +K ++ D AA +ILQ LD Sbjct: 199 ERMTSVEARGILKDDGL-GRKIAEREDETAAMVILQGFLDS 238 >gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD] gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD] Length = 124 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 12/113 (10%) Query: 51 KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV------ 104 + E+L I N+ +IGLPL ++G+EG + N+I R + Sbjct: 6 DSFRAIDEVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDW 65 Query: 105 ------PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 V+ DERLTTVSA + L+ ++S KK VD +A LILQ LD Sbjct: 66 ALDYMPEVVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALDS 118 >gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp. GTL1] gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp. GTL1] Length = 138 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 6/135 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + ++D+GTKRIG+A +D RF P L + L I + I+G P Sbjct: 6 HSVIALDVGTKRIGIAHADTAVRFPVPYGTLEVDGLE--IERLREIIAELEPSLIIVGYP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 N G + + F + + +F DE LT+V A++ L N + + Sbjct: 64 RNQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQN--KPYTKSDI 119 Query: 137 DSIAAALILQEVLDR 151 D+ AAA+IL + L+ Sbjct: 120 DAHAAAIILGDYLEE 134 >gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307] gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307] Length = 151 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + + ++D+G +RIGLA DP P P L R + Q +L + A ++ Sbjct: 7 PQARSVLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVV 66 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL+ +G+ P+ R + + + + +P + +E ++ +A + + R Sbjct: 67 GLPLDPDGAFTPQAEHCRRYGERLA-QSLSLPVAWVNEHSSSWAA----AEQHGLHGDRT 121 Query: 134 QKVDS 138 ++DS Sbjct: 122 GRLDS 126 >gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group] Length = 237 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%) Query: 7 EDLVKSLKPNQPI--------ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 ++L +L PN +DLG R G+A+ G P L + + Sbjct: 56 DELPAALLPNAARRRDGCRFSLGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM- 113 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTV 116 LL + I+GLP++ +GSE P+ + R+ V + + + DE TT+ Sbjct: 114 LLDIAQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEHGTTI 173 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 A + +I V R R K D+ +A +IL+ Sbjct: 174 DALEFMISRGVKRSARDVKSDAYSAMMILERYF 206 >gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2] gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 142 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N I +ID GTK IG AI+D P + ++ ++L + ENI +IG Sbjct: 5 NSKILAIDFGTKIIGTAINDINLNLCLPYCEITNNELK--FKKILEIVEEENIKEIVIGF 62 Query: 76 PLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 P N R F + + + + + F+DE +T S+++ L++ NV K Sbjct: 63 PKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTSKLK 122 Query: 134 QKVDSIAAALILQEVL 149 + D IAA++IL+ L Sbjct: 123 KNKDMIAASIILENYL 138 >gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist] gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27] gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist] Length = 145 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G+ RIG+A A P L R E+L +I+ +I +IGLPL + Sbjct: 11 LGLDFGSTRIGVAR--NCGSLAVPVGVLPRAS----CAEILGYISRYSIDEVVIGLPLTL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G E + F ++ V F+DER TTV A Q + K+ + VD+ Sbjct: 65 AGKEKQSARLAKEFSRFLVSS--GVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAA 122 Query: 140 AAALILQEVLD 150 AA ++LQ LD Sbjct: 123 AATVMLQLFLD 133 >gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group] gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group] gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group] gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group] gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group] gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group] Length = 237 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%) Query: 7 EDLVKSLKPNQPI--------ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58 ++L +L PN +DLG R G+A+ G P L + + Sbjct: 56 DELPAALLPNAARRRDGCGFSLGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM- 113 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTV 116 LL + I+GLP++ +GSE P+ + R+ V + + + DE TT+ Sbjct: 114 LLDIAQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEYGTTI 173 Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 A + +I V R R K D+ +A +IL+ Sbjct: 174 DALEFMISRGVKRSARDVKSDAYSAMMILERYF 206 >gi|264680115|ref|YP_003280024.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2] gi|262210630|gb|ACY34728.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2] Length = 170 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q D G KR G A + A+P P + + + I A +IG+P Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R +P DER +T A + Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156 Query: 137 DSIAAALILQEVL 149 +A +IL++ L Sbjct: 157 ---SACIILEQFL 166 >gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC 25986] gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC 25986] Length = 119 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 A P L +VT A + + G PL M G GP+ A + D Sbjct: 1 MAMPVKVLPAAEVTGMAKTFRYLVEDYEPDILVSGRPLTMAGEPGPQAERVAAVAQKIAD 60 Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + +P F DERL++ A++IL + ++ K+ K+D IAA+L LQ LDR + Sbjct: 61 E-LDLPLEFEDERLSSQEAKRILREQGLNEKQMRGKIDMIAASLFLQTWLDRKN 113 >gi|299534054|ref|ZP_07047406.1| Holliday junction resolvase-like protein [Comamonas testosteroni S44] gi|298717963|gb|EFI58968.1| Holliday junction resolvase-like protein [Comamonas testosteroni S44] Length = 170 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q D G KR G A + A+P P + + + I A +IG+P Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R +P DER +T A + Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156 Query: 137 DSIAAALILQEVL 149 +A +IL++ L Sbjct: 157 ---SACIILEQFL 166 >gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM 9941] gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM 9941] Length = 139 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 P +A++DLG G+A+SDP R A P + ++ L + E + ++ Sbjct: 3 PPEGRVAALDLGEVWTGVAVSDPTRTLARPLEVVRTSELPGVLRRL---VREEGVGEVLV 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLP + G G + + ++ V FV WDERLTT L + ++ Sbjct: 60 GLPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR-- 117 Query: 134 QKVDSIAAALILQEVLD 150 ++VD +AAA +LQE L+ Sbjct: 118 ERVDHLAAARMLQEYLE 134 >gi|21243644|ref|NP_643226.1| Holliday junction resolvase-like protein [Xanthomonas axonopodis pv. citri str. 306] gi|32130040|sp|Q8PII0|RUVX_XANAC RecName: Full=Putative Holliday junction resolvase gi|21109221|gb|AAM37762.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 155 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++P+ + D+G++RIG+A+ A + + L Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRIQ 134 RK+R Sbjct: 123 RKRRRD 128 >gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ] Length = 153 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 19 IASIDLGTKRIGLAISDPGRR-FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I SID G K GLA PGR F R ++ + Q EL I + ++G+P Sbjct: 19 ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136 ++G+E R F + ++ + DE L++ +AQ+ + + + K +++ Sbjct: 79 YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138 Query: 137 DSIAAALILQEVL 149 D +AA +IL++ + Sbjct: 139 DEVAATIILEDFM 151 >gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826] gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826] Length = 134 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G ++ G+A+ + A P L A +++ +++ +IGLP Sbjct: 6 ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G E P R +P + DE L++ A+ L ++VD+ Sbjct: 66 RDGKEHPLAAPIRRIGAK-CQEAFGLPVHYIDEYLSSHEARARLPG--------EKEVDA 116 Query: 139 IAAALILQEVL 149 +AAA+I ++ L Sbjct: 117 MAAAIIAEDWL 127 >gi|58581049|ref|YP_200065.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425643|gb|AAW74680.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 167 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ P+ + D+G++RIG+A+ A + L Sbjct: 16 AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPD 75 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++ P AF + +R +P V DER ++V AQ+ + Sbjct: 76 GLVVGDPLTLDDKHQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 134 Query: 129 RKKRIQ 134 RK+R Sbjct: 135 RKRRRD 140 >gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group II '5-way CG'] Length = 171 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 14/150 (9%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITTEN 67 P+ ID G RIGLAISD RF+ P + + +++ L T + Sbjct: 15 KAPLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKK 74 Query: 68 IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124 I I G+P +++G P+ + +I P WDE LT+ + +++I Sbjct: 75 IRGIIFGVPWYHLSGDPNPKSEIFVEYA-RLIRSLTGCPVFLWDEGLTSDVLKSERISGK 133 Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152 SR K+ +D +A LILQ LD Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163 >gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01] gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 128 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 G RIGLA+ + G FA R +LVR+ + + LL F+ E + ++GLPL + E Sbjct: 2 GEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKES 61 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144 + V + R V DER TT +A + L ++ ++D ++A ++ Sbjct: 62 AQAQRVLPLVEAL--RAKGVEVELVDERYTTQAAARRLKHAPKRIRREKGRLDEMSAVIL 119 Query: 145 LQEVL 149 L+ L Sbjct: 120 LEGYL 124 >gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58] gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58] Length = 173 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFII 73 +D+G R+G+A +DP A P L R + + EL++ ++ A + Sbjct: 16 RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 75 Query: 74 GLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 GLP+N+ G P + +++ VP DERL+TVSAQ L S Sbjct: 76 GLPVNLRGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGLRAAGRSV 135 Query: 130 KKRIQKVD 137 K +D Sbjct: 136 KDSRGVID 143 >gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum] Length = 171 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 14/150 (9%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITTEN 67 P+ ID G R+GLA+SD RF+ P + + +++ L T + Sbjct: 15 KAPLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKK 74 Query: 68 IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124 I + G+P +++G P+ + +I P WDE LT+ + ++++ Sbjct: 75 IQGIVFGVPWYHLSGDPNPKSEVFVEYA-RLIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133 Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152 SR K+ +D +A LILQ LD Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163 >gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. campestris str. B100] gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv. campestris] Length = 155 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++P+ + D+G++RIG+A+ A + + L A Sbjct: 4 AGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPA 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARELRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRI 133 RK+R Sbjct: 123 RKRRR 127 >gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865] gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865] Length = 155 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++P+ + D+G++RIG+A+ A + L Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHATGPDWAALDRVHKEWRPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 +IG PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRIQ 134 RK+R Sbjct: 123 RKRRRD 128 >gi|222112065|ref|YP_002554329.1| holliday junction resolvase-like protein [Acidovorax ebreus TPSY] gi|221731509|gb|ACM34329.1| Holliday junction resolvase YqgF [Acidovorax ebreus TPSY] Length = 139 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A+ R A P+ + R + ++ I A ++G+P Sbjct: 15 QSFLAFDYGLKRTGVAVGTRMLRSATPQGTI-RAEGDARFAQVAERIREWQPDALVVGVP 73 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ +G+ F + R +P DER +T A + Sbjct: 74 LHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEALSAGAADADAASA----- 127 Query: 137 DSIAAALILQEVL 149 +IL++ L Sbjct: 128 -----CIILEQFL 135 >gi|78048618|ref|YP_364793.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925530|ref|ZP_08186918.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118] gi|146325624|sp|Q3BR20|RUVX_XANC5 RecName: Full=Putative Holliday junction resolvase gi|78037048|emb|CAJ24785.1| putative Hollyday junction resolvase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544034|gb|EGD15429.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118] Length = 155 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++P+ + D+G++RIG+A+ A + + L Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVYKQWRPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFGRQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRIQ 134 RK+R Sbjct: 123 RKRRRD 128 >gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium intracellulare ATCC 13950] Length = 250 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 47/117 (40%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +D+G+ RIG+A SDP A P + R + + L + ++ Sbjct: 19 PGRGRRLGVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVV 78 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 GLP + GP + DR P DERLTTVSAQ+ L V K Sbjct: 79 GLPRTLADRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAK 135 >gi|294626288|ref|ZP_06704891.1| holliday junction resolvase-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666666|ref|ZP_06731903.1| Holliday junction resolvase-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599434|gb|EFF43568.1| holliday junction resolvase-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603572|gb|EFF46986.1| Holliday junction resolvase-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 155 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++P+ + D+G++RIG+A+ A + L Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWGALDRVYKQWRPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 +IG PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRIQ 134 RK+R Sbjct: 123 RKRRRD 128 >gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994] gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994] Length = 130 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +IDLG KRIGLA+S G P P + RK Q A ++ + ++G+ Sbjct: 1 MGAIIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ GS R H M + + DE ++ A++++ R KR + Sbjct: 60 PM---GSTTEDEMR-RRVAHFMNLVEFNGEIAYQDESHSSKEAEELMK--GDIRYKRDGR 113 Query: 136 VDSIAAALILQEVL 149 +DS++A +IL+ L Sbjct: 114 IDSLSAKIILERYL 127 >gi|84622967|ref|YP_450339.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577974|ref|YP_001914903.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|118597225|sp|Q5H2Z1|RUVX_XANOR RecName: Full=Putative Holliday junction resolvase gi|146325625|sp|Q2P5W2|RUVX_XANOM RecName: Full=Putative Holliday junction resolvase gi|226695317|sp|B2SIZ4|RUVX_XANOP RecName: Full=Putative Holliday junction resolvase gi|84366907|dbj|BAE68065.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522426|gb|ACD60371.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 155 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ P+ + D+G++RIG+A+ A + L Sbjct: 4 AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++ P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVVGDPLTLDDKHQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRIQ 134 RK+R Sbjct: 123 RKRRRD 128 >gi|121595864|ref|YP_987760.1| Holliday junction resolvase-like protein [Acidovorax sp. JS42] gi|120607944|gb|ABM43684.1| Holliday junction resolvase YqgF [Acidovorax sp. JS42] Length = 139 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A+ R A P+ + R + ++ I A ++G+P Sbjct: 15 QSFLAFDYGLKRTGVAVGTRMLRSATPQGTI-RAEGDARFAQVAERIREWQPDALVVGVP 73 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 L+ +G+ F + R +P DER +T A + Sbjct: 74 LHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEALSAGAADADAASA----- 127 Query: 137 DSIAAALILQEVL 149 +IL++ L Sbjct: 128 -----CIILEQFL 135 >gi|166711264|ref|ZP_02242471.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 155 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ P+ + D+G++RIG+A+ A + L Sbjct: 4 AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWGALDRVHKEWRPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRI 133 RK+R Sbjct: 123 RKRRR 127 >gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp. SB155-2] gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 130 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 IA+ID+G KRIG AI + P+ ++RK Q A ++ SF+ NI ++G+P Sbjct: 3 SRIAAIDVGLKRIGTAIC-LDGKIVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP 61 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 +G+ + A +++D F DE T+ A++ V + K+ K+ Sbjct: 62 ---DGTSKEEMQRRIAHFVSLLD--FDGVVEFVDEGFTSHEAKEATK--GVIKHKKDGKI 114 Query: 137 DSIAAALILQEVL 149 DSIAA IL+ L Sbjct: 115 DSIAAQKILERWL 127 >gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 233 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLA+S P L + + L+LL E + FIIGLP++ Sbjct: 67 LGVDLGMSRTGLALS--KGFSVRPLSVLKLR-GQKLELQLLEIAGREEVDEFIIGLPVSD 123 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ + R DE T+ A ++IDM S+ R ++D Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183 Query: 138 SIAAALILQEVL 149 + AA ++L+ Sbjct: 184 AYAAMMVLERYF 195 >gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce 56'] gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce 56'] Length = 163 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 IDLG R+G+A++D +AHPRP L + L + E I F++GLPL MNG Sbjct: 33 IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 EGP A + V DERLTTV A + L D VS +K ++VD Sbjct: 93 DEGPAARRALA-FAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVD 147 >gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus str. MIT 9202] gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus str. MIT 9202] Length = 140 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 D+GTKRIGLA DP ++ P + R + Q + + I N+ FI+G+PL+ G Sbjct: 2 DVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKGL 61 Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142 + + + +++ + +PF + +E +T + +K + +DS +A Sbjct: 62 MTSQAIDCKNYGQLLLNE-LKLPFSYVNEHSSTWESSDRF----GIKKDKSGLIDSFSAK 116 Query: 143 LILQEVLDRISFLESSKG 160 +IL++ ++ LE G Sbjct: 117 IILEQWIEEGPELEEIIG 134 >gi|325916092|ref|ZP_08178381.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937] gi|325537701|gb|EGD09408.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937] Length = 154 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 +++P+ + D+G++RIG+A+ A + + L Sbjct: 4 AAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPNG 63 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILID-MNVS 128 ++G PL ++ + P AF + R +P V DER ++V AQ+ + + S Sbjct: 64 LVVGDPLTLDDKDQPARKRAHAFARELRAR-YALPVVLIDERSSSVEAAQRFARERADGS 122 Query: 129 RKKR 132 +++R Sbjct: 123 KRRR 126 >gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190] gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190] Length = 149 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTEN 67 ID+G R+G+A+SDP A P + R + E+ + + + Sbjct: 4 PRRGRRLGIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHD 63 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 + I+GLP + G+EGP + RAF +++ + VP DERLTTV A + L + V Sbjct: 64 VVQVIVGLPRTLAGAEGPAAAAARAFADDLV-AVLDVPVELSDERLTTVVATRQLRERGV 122 Query: 128 SRKKRIQKVDSIAAALILQEVLD 150 K++ VD AA ILQ LD Sbjct: 123 KGKRQRAVVDQAAAVAILQGWLD 145 >gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum] Length = 171 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 2 SILLIEDLVKSL-KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58 + L DLVK+ K + +D+G K +GLA+SD + A P LVRKK A + Sbjct: 6 PLQLFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAAD 65 Query: 59 LLSFITTENIAAFIIGLP--LNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLT 114 S ++ ++ F+IGLP ++ + F+ N+ + + + +W+E T Sbjct: 66 FKSLVSKYSLKGFVIGLPFDRHL---VSSDAVKVKVFIDNLRRTNMFDGLKYTYWNECFT 122 Query: 115 TVSAQQILIDMNVSRKKR-IQKVDSIAAALILQEVLDRI 152 + + + ++ +N++ +D AA ILQ LD + Sbjct: 123 SKNVEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYV 161 >gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays] gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays] Length = 235 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLAI G F P L R + + L LL + IIGLP++ Sbjct: 75 LGVDLGDARTGLAIG-RGITFPRPLTVL-RLRGQKLELALLDVARQQEADELIIGLPVSA 132 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +GSE P+ + R+ V + + + DE T+ A +I V + R K D Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192 Query: 138 SIAAALILQEVL 149 + AA +IL+ Sbjct: 193 AYAAVMILKRYF 204 >gi|319764293|ref|YP_004128230.1| holliday junction resolvase yqgf [Alicycliphilus denitrificans BC] gi|317118854|gb|ADV01343.1| Holliday junction resolvase YqgF [Alicycliphilus denitrificans BC] Length = 137 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 12/133 (9%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A+ R A P+ + R + + I A ++G+P Sbjct: 13 QSFLAFDFGLKRTGVAVGTRMLRTATPQGTI-RAEGDARFAAVAERIREWQPDALVVGVP 71 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R + DER +T A + Sbjct: 72 CHPDGAPHENTARALKFARQLRGR-FGLQVFEVDERYSTTEALAAGAGDADAASA----- 125 Query: 137 DSIAAALILQEVL 149 +IL++ L Sbjct: 126 -----CIILEQFL 133 >gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1] gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1] Length = 85 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%) Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 ++GLP NM+GSEGPR ++RAF N + +P + WDER +T SA+ +I ++SRKK Sbjct: 1 MLGLPRNMDGSEGPRAQASRAFARN-AEEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59 Query: 132 RIQKVDSIAAALILQEVLDRIS 153 R + +DS AAA+ILQ +DR++ Sbjct: 60 RAESIDSHAAAVILQGAIDRLA 81 >gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma proteobacterium HTCC2148] gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma proteobacterium HTCC2148] Length = 98 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 + + ++G PLNM+GS F + ++ +P DERL++ A+ Sbjct: 2 AALVDEWQPDLLVVGEPLNMDGSVSELSEKAHKFGRRL-GGRLNLPVQMVDERLSSFEAK 60 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149 Q + +DS+AA LILQ L Sbjct: 61 QQSRERGHGGDYNKNPIDSLAAELILQTWL 90 >gi|121606236|ref|YP_983565.1| Holliday junction resolvase-like protein [Polaromonas naphthalenivorans CJ2] gi|120595205|gb|ABM38644.1| Holliday junction resolvase YqgF [Polaromonas naphthalenivorans CJ2] Length = 156 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A + R A P+ + + V + L + + I A ++G+P Sbjct: 30 QTFLAFDYGFKRTGVASGNILTRTATPQATIAAEGVARFPL-IQARIKEWQPDALVVGIP 88 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ + F + R + DER +T A + Sbjct: 89 FHPDGASHDNTVRAQKFARQLRGR-FGLQVFEVDERYSTTEA----LASGAKDADAASA- 142 Query: 137 DSIAAALILQEVLDRISF 154 ++IL++ L + Sbjct: 143 -----SIILEQFLRSLPH 155 >gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus] Length = 296 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 6/142 (4%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 +P++ +D GT+R+GLAI A P V + + A ++L E I ++ Sbjct: 75 RPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRDIVV 133 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 GLPL NG+E R F + D + WDER ++ A +L Sbjct: 134 GLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGM 193 Query: 130 KKRIQKVDSIAAALILQEVLDR 151 +++ +DS+AA+LIL+ + Sbjct: 194 SSKVE-IDSLAASLILKHFFEE 214 >gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303] gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. MIT 9303] Length = 214 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + I S+DLG +RIGLA DP P P L RK + L T+ + Sbjct: 54 MTATKPRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRKV 113 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLPL+ G + + + R + +P +E ++ +A + Sbjct: 114 EGLVVGLPLDSKGLPTDQARHYERYGQRLA-RALKLPLALVNEHSSSWAAAERYNLQG-- 170 Query: 129 RKKRIQKVDS 138 R ++DS Sbjct: 171 --DRSGQLDS 178 >gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 135 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q I ++D+G KRIG+A + P P ++RK Q A ++ + I +N +IG+ Sbjct: 1 MQNIIALDIGLKRIGIA--QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILVIGI 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + + S + F+ N+++ + F DE ++ A Q + + KK+ Sbjct: 59 PQDGDSSL-EMERRIKHFI-NLLEIPKGIEICFIDESFSSFEALQKM-QGSKKNKKKDGS 115 Query: 136 VDSIAAALILQEVL 149 +DS+AA +IL+ L Sbjct: 116 LDSLAALIILERYL 129 >gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 151 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 +K KP + I S+D+G KRIGLA D + P L R++ + + I N+ Sbjct: 1 MKYCKPKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNL 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 FI+GLPL+ G + + + + + + +PF F +E +T + V Sbjct: 61 TGFIVGLPLDEAGGMTSQALDCKTYGEFLFNE-LKLPFSFVNEHSSTWESTNRF---GV- 115 Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160 +K + +DS++A +IL++ + L+ G Sbjct: 116 KKDKSGLIDSLSAKIILEQWIQEGPELKELVG 147 >gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein) [Campylobacter lari RM2100] gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein) [Campylobacter lari RM2100] Length = 128 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ + A P ++RK Q A E+ +I ++ ++G+PL Sbjct: 4 LALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPLGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE F+ + F DE ++ +AQ++ + V+ KK+ K+DS+ Sbjct: 63 S-SEDEMRKRVEHFISLL---DFDKEVFFVDESFSSKNAQELGM---VNLKKKDGKLDSL 115 Query: 140 AAALILQEV 148 AA L L++ Sbjct: 116 AAYLFLKDF 124 >gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701] gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701] Length = 161 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 P + + ++D+G +RIGLA DP P L R L + + A ++ Sbjct: 6 PPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRVQALVV 65 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 GLPL+ + + R + + + + +P + DE ++ A ++ + + S + Sbjct: 66 GLPLDASQQPTVQARHCRRYGQRLA-QALELPLAWVDEHGSSWEAGERRGLHGDRSGQ 122 >gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp. succinogenes S85] Length = 134 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D G R+G+A D + A R + +K T L + I F++G+P + Sbjct: 1 MALDYGEHRVGVAFGDSELKMAFSRETI-DQKTTNLFERLDQLVRLNKIDEFVVGMPYHP 59 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQKVDS 138 +G + + AF+ ++ R + DE ++V AQ+ M+ ++K +D Sbjct: 60 DGRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDR 119 Query: 139 IAAALILQEVLDR 151 AAA+ILQ D Sbjct: 120 TAAAIILQRWFDE 132 >gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Megamonas hypermegale ART12/1] Length = 75 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 45/75 (60%) Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MNG+ G R + F +++ +FWDERL+TV+A + L++ +VSR KR + +D Sbjct: 1 MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60 Query: 139 IAAALILQEVLDRIS 153 +AA ILQ LD + Sbjct: 61 MAAVFILQGYLDSLK 75 >gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 153 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + S D G KRIGLA DP + R + + S I I+ Sbjct: 4 PKPTSVLSFDYGHKRIGLAGCDPLGITVTALSPIHRISFQKDLTLIKSLCIEREIKGLIV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 GLPL+ +G + + + + + +P + +E ++ A Q N R Sbjct: 64 GLPLDESGQNTVQSIHCQNYGIKIAKE-LDLPLAWVNEHSSSWDAGQKYNLQN----DRT 118 Query: 134 QKVDSIAAALILQEVLDRISFLE 156 K+DS AAL+L++ L L+ Sbjct: 119 GKLDSAVAALLLEQWLREGPELQ 141 >gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL 2338] gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL 2338] Length = 124 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 39 RFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97 A P L R + L+ + + ++G+P + G GP + ++ + Sbjct: 1 MLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTLAGRHGPAAEAAESYGTAL 60 Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 +R VP V+ DERLTTV+A ++L V KK+ VD AA ILQ LD Sbjct: 61 AERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQAAAVEILQAWLDS 114 >gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum] Length = 168 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR--------KKVTQTALELLSFITTENIAA 70 + ID G +R+G+A+SDP R A P LVR ++ + L T ++ Sbjct: 11 LMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDVTG 70 Query: 71 FIIGLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 + G+P +++G P ++ R + +P DE ++ A + + + R Sbjct: 71 LVFGIPYYHLSGDPNPHAPLFLRVARDL-SRDLALPLFLHDEGQSS-EAAREIRKGHPGR 128 Query: 130 KKRIQKVDSIAAALILQEVLD 150 + Q +D +AAA +LQ LD Sbjct: 129 RNSAQSLDHVAAATLLQGFLD 149 >gi|330826424|ref|YP_004389727.1| Holliday junction resolvase [Alicycliphilus denitrificans K601] gi|329311796|gb|AEB86211.1| Holliday junction resolvase [Alicycliphilus denitrificans K601] Length = 139 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 Q + D G KR G+A+ R A P+ + R + + I A ++G+P Sbjct: 13 QSFLAFDFGLKRTGVAVGTRMLRTATPQGTI-RAEGDARFAAVAERIREWQPDALVVGVP 71 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 + +G+ F + R + DER +T A + Sbjct: 72 CHPDGAPHENTARALKFSRQLRGR-FGLQVFEVDERYSTTEALAAGAGDADADAASA--- 127 Query: 137 DSIAAALILQEVL 149 +IL++ L Sbjct: 128 -----CIILEQFL 135 >gi|190573126|ref|YP_001970971.1| Holliday junction resolvase-like protein [Stenotrophomonas maltophilia K279a] gi|190011048|emb|CAQ44657.1| putative resolvase [Stenotrophomonas maltophilia K279a] Length = 164 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 + +++ + + D+G++RIG+AI A + + + Sbjct: 10 DSAAPAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLLKEW 69 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDM 125 ++G PL ++G + P + F + +R +P V DER ++V A++ ++ Sbjct: 70 KPDGLVVGDPLTLDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVER 128 Query: 126 NVSRKKRI 133 RK+R Sbjct: 129 AEGRKRRR 136 >gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral taxon 171 str. F0337] gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral taxon 171 str. F0337] Length = 129 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Query: 46 FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YV 104 L R + E + + I+GLP +M G RA+ ++ R V Sbjct: 3 TLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPRQV 62 Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL--DRISFLESSK 159 DERLTTV+A + L + + VD AA +IL++ + +R+S + + + Sbjct: 63 CVRLVDERLTTVTAHRDLHAAGMKERSFRGIVDQAAAVVILEQAITTERMSGVPAGE 119 >gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC 35110] gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC 35110] Length = 143 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + +ID GTKR GLA +DP + F+ + + E+ + I ++G Sbjct: 7 KKRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKL---DGIEKILVGY 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133 P N +GS + F+ + +P DE ++ +A ++LI RK R Sbjct: 64 PTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGEKRKSRQKK 123 Query: 134 QKVDSIAAALILQEVLDRIS 153 ++DS AAAL+LQ L+R Sbjct: 124 GRLDSAAAALLLQNYLERQR 143 >gi|254523604|ref|ZP_05135659.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp. SKA14] gi|219721195|gb|EED39720.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp. SKA14] Length = 155 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 +++ + + D+G++RIG+AI A + + + Sbjct: 4 AAAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWAAIERLLKEWKPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 ++G PL ++G P + F + +R +P V DER ++V A++ ++ Sbjct: 64 GLVVGDPLTLDGQNQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEG 122 Query: 129 RKKRI 133 RK+R Sbjct: 123 RKRRR 127 >gi|171060631|ref|YP_001792980.1| Holliday junction resolvase-like protein [Leptothrix cholodnii SP-6] gi|170778076|gb|ACB36215.1| Holliday junction resolvase YqgF [Leptothrix cholodnii SP-6] Length = 149 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 2/109 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ Q S D G KR G+A + A P + + + I Sbjct: 8 AAVVRAPQTFLSFDYGRKRTGVASGNRVFGQATPLTTVTAE-GDARFERIARLIAEWQPD 66 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 A ++G+P + +G+ + F + R +P DER +T Sbjct: 67 ALVVGVPRHPDGAPHENTRLAQRFARQLHGR-FRLPVFEVDERYSTTEV 114 >gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001] gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001] Length = 167 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + + ++D+G +RIGLA DP P L R + L + + A ++ Sbjct: 4 PRPRSVLALDVGRRRIGLAGCDPLGLTVRRLPALARGRFPADLQRLQELLAERRVEALVV 63 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129 GLPL+ G + R + + +P + +E +T +A++ + + S Sbjct: 64 GLPLDQAGQPTEQARHCRRYGERLAVG-TGLPLAWVNEHGSTWSAAERHGLHGDRSG 119 >gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas maltophilia R551-3] gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia R551-3] Length = 164 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 ++ + + D+G++RIG+AI A + + I + Sbjct: 16 IRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLV 75 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRKK 131 +G PL ++G + P + F + +R +P V DER ++V A++ ++ RK+ Sbjct: 76 VGDPLTLDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEGRKR 134 Query: 132 RI 133 R Sbjct: 135 RR 136 >gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter mediatlanticus TB-2] gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter mediatlanticus TB-2] Length = 130 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +ID+G KRIG+A + P P ++RK Q A E+ + + ++G+ Sbjct: 1 MERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGI 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + + F N+ID F DE T+ ++ + + KR + Sbjct: 60 PK----TNEEMTKRIKHF-TNLID--FNGKIEFVDESFTSAIVEEEIK--GKIKHKRDGR 110 Query: 136 VDSIAAALILQEVL 149 +DS+AA IL+ L Sbjct: 111 IDSLAAKKILESFL 124 >gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX] gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX] Length = 159 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D G RIG+A SDP A P + R + + + I+G P ++ Sbjct: 7 LAVDPGAARIGVARSDPDGILAIPVETIRR--GPGDLDRIAALVLEYEAREVIVGYPASL 64 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-------RKKR 132 +G+EG + RAF + R VP DERLTTV+A+ L + R Sbjct: 65 SGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRAR 124 Query: 133 IQKVDSIAAALILQEVLD 150 +D AA ++LQ LD Sbjct: 125 RSVIDQAAATVLLQNALD 142 >gi|297170741|gb|ADI21763.1| predicted endonuclease involved in recombination (possible holliday junction resolvase in Mycoplasmas and B. subtilis) [uncultured gamma proteobacterium HF0130_22O14] Length = 141 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 5/140 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + D G ++G+AI A P +V + + + I I+G Sbjct: 2 SSTFIAFDFGMTKMGIAIGQNITNTASPLDPMVMRNGSPDWDLVERLIKEYRPTTIILGK 61 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----DMNVSRKK 131 P ++ S + +AF ++ ++ + E LT+ A++ L + +SRK Sbjct: 62 PKVIDESSETLMKKIKAFKRSL-EKDFSQNVEWTPEHLTSKDAKEKLKVRRQEGILSRKI 120 Query: 132 RIQKVDSIAAALILQEVLDR 151 ++DS+AAA+ LQ+ +++ Sbjct: 121 MKGQIDSMAAAIFLQDWMNQ 140 >gi|289664581|ref|ZP_06486162.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670433|ref|ZP_06491508.1| Holliday junction resolvase-like protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 155 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ + + D+G++RIG+A+ A + + L + Sbjct: 4 AGVIRSDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWVALDRVHKEWHPD 63 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128 +IG PL ++ + P AF + +R +P V DER ++V AQ+ + Sbjct: 64 GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122 Query: 129 RKKRIQ 134 RK+R Sbjct: 123 RKRRRD 128 >gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170 str. F0386] Length = 129 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%) Query: 46 FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-V 104 L R + E + + I+GLP +M G R + ++ R V Sbjct: 3 TLRRDRYGADLDEAVDLVDEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQRV 62 Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL--DRISFLESSK 159 DERLTTV+A + L + + VD AA +IL++ + +R+S + + + Sbjct: 63 CVRLVDERLTTVTAHRDLHAAGLKERSFRGIVDQAAAVVILEQAITTERMSGVPAGE 119 >gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax benzoatilyticus JA2] gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax benzoatilyticus JA2] Length = 136 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 + + D G +R+G+A+ + A P + + + I A ++G+P Sbjct: 11 RSFLAFDFGVRRVGVAVGNTLLAEARPLKTVAAE-GDARFEAIARLIDEWQPDALVVGVP 69 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 + +G+E R F + R +P DER TTV Sbjct: 70 FHPDGAEHDNTRRARRFARQLHGR-FRLPVHEVDERYTTV 108 >gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73] gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas albilineans] Length = 165 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 1/115 (0%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 D +L+ + + D+G +RIG+A+ A + L Sbjct: 11 TDGAATLRHDGTVLGFDVGHRRIGVAVGSRFGSGARALAVIDVHAQGPDWPALDRLHAQW 70 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 ++G PL ++G++ P AF + + +P V DER ++V A Q Sbjct: 71 RPHGLVVGDPLTLDGADQPNRKRAHAFAREL-GARYCLPVVLVDERSSSVEAAQR 124 >gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 107 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 G+ RIG+AISDP FA FL + L L I N+ +IGLP+ NG + Sbjct: 2 GSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLAL--LIRKHNVKKVVIGLPIRTNGKKD 59 Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 + + + + F+ WDER TT AQ L D +S KK+ Sbjct: 60 READAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107 >gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli 95/1000] gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli 95/1000] Length = 137 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G K+ G A D + P + + L+ I + I + GLPL+ Sbjct: 3 ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E R F ++ V V VF DE T+ A IL + + + D Sbjct: 63 DEGKESEWCAEIRRFSEFLLK-SVKVNIVFVDEYGTSKEADFILR--GKKKSVKKKANDL 119 Query: 139 IAAALILQEVLDRIS 153 IAA LIL+ L+ ++ Sbjct: 120 IAAVLILENYLNILN 134 >gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902] gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902] Length = 164 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + S+D+G KRIGLA DP P P L R + L L T ++ ++GLPL Sbjct: 13 SVLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLVVGLPL 72 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 + G + R + + + + +P + +E +T +A ++ + + + + Sbjct: 73 DAAGQPTAQAEHCRRYGVRLA-QSLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 125 >gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 147 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT------ENIAAFII 73 ++DLGTK G AISD A + ++ +L+ I I ++ Sbjct: 4 LALDLGTKSCGFAISDLLGIIASGLDNFIYEE--NDFTAVLAKIDEIMINYHHEIDTIVL 61 Query: 74 GLPLNM-NGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSR 129 G P N+ +GS+ R + +F + + + V+ DER +T A Q L + V Sbjct: 62 GYPTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVKA 121 Query: 130 KKRIQKVDSIAAALILQEVL 149 K + D ++A +IL+ L Sbjct: 122 AKIKKVKDKMSAVVILESYL 141 >gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917] gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917] Length = 158 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G +RIGLA DP P L R++ + L + ++GLPL+ Sbjct: 1 MSLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDR 60 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 NG + + + + + + +P + +E ++ +A + L R K+DS Sbjct: 61 NGQPTEQAMHCQRYGLRLAEA-LQLPLAWINEHSSSWAAGEALGLHG----DRSGKLDS 114 >gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1] gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1] Length = 139 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID G K+ G A D + P + + L+ I +NI + GLPL+ Sbjct: 2 VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G E R F ++ V V VF DE T+ A IL +K + + D Sbjct: 62 DEGKESDWCAEIRRFSEFLLK-SVKVDIVFVDEYGTSKEADFILR--GKKKKVKNKANDL 118 Query: 139 IAAALILQEVLDRISF 154 IAA LIL+ L+ ++ Sbjct: 119 IAATLILENYLNVLNM 134 >gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG 18818] gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 140 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N+ I + D+G KRIGLA++ G P ++RK Q + EL + T I ++GL Sbjct: 3 NKKILACDVGLKRIGLAVTQLGIIL--PIEPIIRKNRNQASKELSEILKTREIEILVVGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KR 132 P FV + + DE T++ A Q M V + ++ Sbjct: 61 PSGGEAGHSDTRKRILHFVGLVA---FGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117 Query: 133 IQKVDSIAAALILQEVLDRISFL 155 ++DS++A LIL+ L+ + L Sbjct: 118 DGRLDSLSATLILERFLESNNPL 140 >gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius LAA1] gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius LAA1] Length = 105 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 E + ++G PL+M+G F M+ + +P +DERLTTVSA+ Sbjct: 2 ADLSRREEVGRIVVGRPLHMSGQPSEMTSRAEKFA-RMLAARTGLPVDLYDERLTTVSAE 60 Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149 +ILI+ NV R++R VD+ AA ++L++ L Sbjct: 61 RILIEQNVRRRERRATVDAAAAQVLLEDYL 90 >gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299] gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299] Length = 126 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 10/132 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +ASID+G KRIG+A+S + P+ ++RK Q + ++ +F+ I I+G P Sbjct: 2 KLASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFPS 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + + + FV+ + K VF +E ++++ A++++ + KR +VD Sbjct: 61 SSD----DMQKRVKHFVNLL---KFEGEIVFQEENMSSIEAEELMK--GDIKYKRDGRVD 111 Query: 138 SIAAALILQEVL 149 S+AA +IL+ L Sbjct: 112 SLAAKIILERYL 123 >gi|167972674|ref|ZP_02554951.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974599|ref|ZP_02556876.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167976242|ref|ZP_02558519.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988740|ref|ZP_02570411.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363072|ref|ZP_02696246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867885|ref|ZP_03079884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273722|ref|ZP_03206257.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554058|ref|YP_002284772.1| hypothetical protein UUR10_0379 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550702|ref|ZP_03771651.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551167|ref|ZP_03772113.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226695314|sp|B5ZBI2|RUVX_UREU1 RecName: Full=Putative Holliday junction resolvase gi|171903041|gb|EDT49330.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209165|gb|EDU06208.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018995|gb|EDU57035.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997817|gb|EDU66914.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659638|gb|EDX53018.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660462|gb|EDX53720.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249750|gb|EDY74531.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541559|gb|ACI59788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378982|gb|EEH01347.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379856|gb|EEH02218.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 147 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 12/140 (8%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT------ENIAAFII 73 ++DLGTK G AISD A + ++ + +L+ I I ++ Sbjct: 4 LALDLGTKSCGFAISDLLGIIASGLDNFIYEE--NDFIAVLAKIDEIMINYHHEIDTIVL 61 Query: 74 GLPLNM-NGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSR 129 G P N+ +GS+ R + +F + + + V+ DER +T A Q L + V Sbjct: 62 GYPTNVYDGSKNKRTYLIESFYTLLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVKA 121 Query: 130 KKRIQKVDSIAAALILQEVL 149 K + D ++A +IL+ L Sbjct: 122 AKIKKVKDKMSAVVILESYL 141 >gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 140 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +D G GL+I+D + FA + +K+ L SF+ E I +IGL Sbjct: 1 MAKILGMDYGKVITGLSITDDEQIFAFGLDSVPTEKLMSF---LESFLYHEKIDKIVIGL 57 Query: 76 PLNMNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +N E + F+++ R + DER T+ A +I++ + +K+R + Sbjct: 58 PKKLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKK 117 Query: 135 KV-DSIAAALILQEVLDR 151 + + I+A +ILQ L R Sbjct: 118 VILNQISATIILQSYLAR 135 >gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens] Length = 172 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG + GLAIS G P +VR++ + +L + F++GLP Sbjct: 16 VGVDLGDAKTGLAIS-LGGYAPRPL-TVVRQRGDKLLETILQVGIPQRADEFVVGLPKAW 73 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV------PFVFWDERLTTVSAQQILIDMNVSRKKRI 133 +G + + + R+F + + V DE T+ A +IDM +R+ R Sbjct: 74 DGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSRK 133 Query: 134 QKVDSIAAALILQEVLDR 151 +++D+ AA +L + Sbjct: 134 EQLDAYAATALLCRYFES 151 >gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168] Length = 91 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + I+ ++G PL + G PR F +++ + + VF DERLTT AQ L Sbjct: 1 MKEYPISILVLGYPLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFL 59 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150 +D+ +S KKR + +D +AA +IL+ L+ Sbjct: 60 LDLGISFKKRQKVIDKLAAQIILERFLN 87 >gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665] gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665] gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665] Length = 189 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFII 73 +D+G R+G+A +DP A P L + + EL++ ++ A + Sbjct: 32 RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 91 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129 GLP+N+ G P + + VP DERL+TVSAQ L S Sbjct: 92 GLPVNLRGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGLRAAGRSV 151 Query: 130 KKRIQKVD 137 K +D Sbjct: 152 KDSRGVID 159 >gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri SMDSEM] gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri SMDSEM] Length = 138 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ID GTKRIGL+I P R A L + +I + I +IG Sbjct: 1 MSKILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGH 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133 PL + S P F++ + + DER ++ A LI+ N ++K+ Sbjct: 59 PLKSDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQK 118 Query: 134 QKVDSIAAALILQEVL 149 + +D I+A L+LQ+ + Sbjct: 119 KILDQISAILLLQDFI 134 >gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales bacterium GD 1] gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales bacterium GD 1] Length = 131 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 7/130 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +IDLG KRIGLA S + P P ++RK Q + E+ + + A +IG+PL Sbjct: 4 IAIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVPLG- 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 GS + A N+++ ++ DE +++ A+ ++ + R ++DSI Sbjct: 62 -GSSEDEMRRRIAHFMNLVN--FEGEILYQDEAGSSLEAENMMK--GEIKYIRDGRIDSI 116 Query: 140 AAALILQEVL 149 +A +ILQ L Sbjct: 117 SAMIILQRYL 126 >gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri JV22] gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri JV22] Length = 126 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 10/132 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +ASID+G KRIG+AI P+ ++RK Q A ++ +F+ I I+G P Sbjct: 2 KLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFPT 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 S + + FV+ + K+ +P+ F +E ++++ A++++ + KR +VD Sbjct: 61 ----SSEDMQNRIKHFVNLL---KLQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRVD 111 Query: 138 SIAAALILQEVL 149 S+AA +IL+ L Sbjct: 112 SLAAKIILERYL 123 >gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas denitrificans DSM 1251] gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM 1251] Length = 130 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +IDLG KRIGLA S + P + RK Q A ++ + + A ++G+PL Sbjct: 4 IAIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIPLGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + + R H M + DE +++ A+ ++ + R ++DSI Sbjct: 63 SSED----EMRRRVAHFMNLVAFEGEIFYQDESNSSIEAESMMR--GEIKYIRDGRIDSI 116 Query: 140 AAALILQEVL 149 +A +ILQ L Sbjct: 117 SAMIILQRYL 126 >gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola AmH] gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 130 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ID+G KRIG+A S+ P P ++RK Q A + + I ++GL Sbjct: 1 MEKIIGIDVGLKRIGVAFSN--GSVVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGL 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL + R FV + VF DE T+ ++ + V + K+ + Sbjct: 59 PL----TNEEMQRRIRHFVSLL---PFEGKIVFVDESYTSAEVEEEIK--GVIKHKKDGR 109 Query: 136 VDSIAAALILQEVL 149 +DS+ A +++ L Sbjct: 110 IDSLVAKKLIENYL 123 >gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805] gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805] Length = 151 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G +RIGLA D P P L R Q L + N+ ++GLPLN Sbjct: 2 LSLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLND 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130 G + H R + + R + +P F +E ++ +A++ + + S + Sbjct: 62 QGQPTDQAHHCRRYGRRIA-RDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112 >gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri RM4018] gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction resolvase [Arcobacter butzleri RM4018] Length = 126 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 10/132 (7%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 +ASID+G KRIG+AI P+ ++RK Q A ++ +F+ I I+G P Sbjct: 2 KLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFPT 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 S + + FV+ + ++ +P+ F +E ++++ A++++ + KR +VD Sbjct: 61 ----SSEDMQNRIKHFVNLL---ELQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRVD 111 Query: 138 SIAAALILQEVL 149 S+AA +IL+ L Sbjct: 112 SLAAKIILERYL 123 >gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102] gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 157 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + + S+D+G KRIGLA DP P L R + L + + Sbjct: 1 MPRPCSVLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 +GLPL+ G + + + + + +P + +E +T +A ++ + + S + Sbjct: 61 VGLPLDAAGQPTAQADHCLRYGRRLA-QALQLPLAWVNEHSSTWAAGERHGLKGDRSGR 118 >gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis] Length = 227 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFII 73 + +D G + +GLA+S P L + Q A +L+ E A ++ Sbjct: 28 RRALGLDYGRRVVGLAVS-TLGLAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVL 86 Query: 74 GLPLNMNG------SEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125 GLP+ + G ++ + R F NM +P DER +T++A+++L Sbjct: 87 GLPVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASS 146 Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149 R +++DS+AAA+IL+ Sbjct: 147 GSRRSTLSKRMDSVAAAVILESFF 170 >gi|91787040|ref|YP_547992.1| Holliday junction resolvase-like protein [Polaromonas sp. JS666] gi|118597219|sp|Q12EE8|RUVX_POLSJ RecName: Full=Putative Holliday junction resolvase gi|91696265|gb|ABE43094.1| Holliday junction resolvase YqgF [Polaromonas sp. JS666] Length = 138 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 15/149 (10%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 MS+ + L L Q + D G +R G+A + R A P+ + + Sbjct: 1 MSLAAVPHLTAGL---QTFLAFDFGLQRTGVATGNVLTRTATPQATIAAT-GDARLKAIE 56 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 I A ++G+P + +G+ + F + R + DER +T A Sbjct: 57 LRIREWQPDALVVGIPFHPDGASHENTRRAQKFSRQLRAR-FGLKVFEVDERYSTTEALA 115 Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149 + +IL++ L Sbjct: 116 GGAADADAASA----------CIILEQFL 134 >gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter upsaliensis JV21] gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter upsaliensis JV21] Length = 127 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP Sbjct: 5 LALDLGLKRIGLALYVEN--IAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLPKG- 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + F+ + + +F DE T+ AQ + + + +K+ K+DS+ Sbjct: 62 GASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQGLGVA---NSRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA ++L+ Sbjct: 116 AALIMLRGYF 125 >gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM 16294] gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM 16294] Length = 132 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +IDLG KRIGLA S + P P ++RK Q + E+ I A +IG+PL Sbjct: 4 IAIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVPLGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE F+ N++D ++ DE +++ A+ ++ + R +VDS+ Sbjct: 63 S-SEDEMRRRIEHFM-NLVD--FEGKVLYQDEAGSSLEAENMMK--GKIKYIRDGRVDSL 116 Query: 140 AAALILQEVL 149 +A +ILQ L Sbjct: 117 SAMVILQRFL 126 >gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205] Length = 167 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 + + + S+D+G KRIGLA DP P P L R + +L + + I A Sbjct: 2 AAPAPRSVLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILAL 61 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 ++GLPL+ + R + + R + +P F +E ++ A + Sbjct: 62 VVGLPLDAQQQPTAQAEHCRRYGERLA-RDLDLPLAFVNEYASSWDAGER 110 >gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis RM3195] gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis RM3195] Length = 127 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP Sbjct: 5 LALDLGLKRIGLALYVEN--IAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLPKG- 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 SE + F+ + + +F DE T+ AQ + + + +K+ K+DS+ Sbjct: 62 GASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQDLGVA---NSRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA ++L+ Sbjct: 116 AALIMLRGYF 125 >gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis ATCC BAA-381] gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 127 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 +D+G KRIG+A+ + P+ ++RK Q A E+ + + ++G+PL + Sbjct: 6 GLDVGLKRIGVAL--AFDKIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPLGGS 63 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 SE F + +F DE ++V A ++ S KK+ K+DS+A Sbjct: 64 -SEDEMKRRITHFCSLL---NFKGEIIFMDESYSSVEADEM---RQFSGKKKDGKLDSLA 116 Query: 141 AALILQEVL 149 A +IL+ L Sbjct: 117 AMVILKRYL 125 >gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali] gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali] Length = 145 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 4/141 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGL 75 P +DLG K +G++IS F+ L + L I +NI I+GL Sbjct: 6 PYLGLDLGEKTLGISIS-EAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGL 64 Query: 76 PLNMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 P +MN G + + F + D K+ V + WDERL+T + L + N ++KK Q Sbjct: 65 PKHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQ 124 Query: 135 KVDSIAAALILQEVLDRISFL 155 D +AA ILQ LD S + Sbjct: 125 LKDEVAAMFILQNFLDYQSNI 145 >gi|121608487|ref|YP_996294.1| Holliday junction resolvase-like protein [Verminephrobacter eiseniae EF01-2] gi|121553127|gb|ABM57276.1| Holliday junction resolvase YqgF [Verminephrobacter eiseniae EF01-2] Length = 161 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 14/143 (9%) Query: 9 LVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66 L +L P + + D G KR+G+A + A P+ + ++ I Sbjct: 27 LAPALVPAHVRTFLAFDFGLKRVGVASGNRLLLRAAPQSTIAAVGA-ARWAQVAQRIGQW 85 Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 A +IG+PL+ +G+ F + R +P DER +T A Sbjct: 86 QPDALVIGVPLHPDGASHENTALALRFGRQLRGR-FGLPVFEVDERYSTTEAIAGGAKDA 144 Query: 127 VSRKKRIQKVDSIAAALILQEVL 149 + +IL++ L Sbjct: 145 DAAAA----------CIILEQFL 157 >gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 190 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 14/137 (10%) Query: 20 ASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 +D G R G+A++ DP P L T+ ++ + E + ++GLP Sbjct: 21 IGVDYGLVRTGVAVTVGYDP-----KPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLP 75 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131 L+ NG+ + + T FV + + V +DER T+ +A N + Sbjct: 76 LHKNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRNPHQPL 135 Query: 132 RIQKVDSIAAALILQEV 148 +D+ AA +IL+ Sbjct: 136 -YGTLDADAACIILENY 151 >gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT 9313] gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 161 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + + + S+DLG +RIGLA DP P P L RK + L T+ + Sbjct: 1 MTATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKV 60 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 ++GLPL+ G + + + R + +P +E ++ +A + Sbjct: 61 EGLVVGLPLDAKGLPTDQARHYERYGQRLA-RALKLPLALVNEHSSSWAAAERYNLQG-- 117 Query: 129 RKKRIQKVDS 138 R ++DS Sbjct: 118 --DRSGQLDS 125 >gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str. Vollum] Length = 75 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75 I +D+GTK +G+AISD A + ++ + + ++ ++GL Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61 Query: 76 PLNMNGSEGPRVHS 89 P NMNG+ GPR + Sbjct: 62 PKNMNGTIGPRGEA 75 >gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus 525.92] gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 127 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 11/134 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ +ID+G KR+G+A P+ ++RK Q A E+ + + ++G+ Sbjct: 2 SEKFMAIDVGLKRVGVAFG--TGGIVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGV 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + SE FV + ++ V+ DE ++ A +I D KR + Sbjct: 60 PKGGS-SEDEMRRRIEHFVSLL---EISAKIVYQDEAFSSFEASEIYTDT-----KRDGR 110 Query: 136 VDSIAAALILQEVL 149 +DS+AA LIL+ L Sbjct: 111 LDSVAAMLILKRYL 124 >gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101] Length = 151 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIGLA D P P L R + L S + I A ++GLPL+ Sbjct: 2 LALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDA 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129 + R + + R + +P +E ++ +A++ + + S Sbjct: 62 QQQPTEQAEHCRRYGERLA-RHLALPLALVNEFASSWAAAERHGLHGDRSG 111 >gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae] Length = 74 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+E P + R F + + R + DERLTT+ A+ L + R K+DS Sbjct: 1 MDGTEQPISNQARKFANRLHGR-FGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59 Query: 139 IAAALILQEVLDR 151 I+A +IL+ ++ Sbjct: 60 ISAVIILESWFEQ 72 >gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3] Length = 78 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 42/78 (53%), Positives = 54/78 (69%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60 Query: 61 SFITTENIAAFIIGLPLN 78 F E +A F+IGLP+N Sbjct: 61 DFAAKERVAGFVIGLPMN 78 >gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis SUMu002] gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis SUMu004] gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis SUMu006] gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis SUMu007] gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis SUMu008] gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis SUMu009] gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis SUMu010] gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis SUMu011] gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis SUMu002] gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis SUMu004] gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis SUMu006] gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis SUMu007] gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis SUMu008] gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis SUMu009] gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis SUMu010] gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis SUMu011] Length = 122 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 40/107 (37%) Query: 45 PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 + R + + L + I+GLP + G + R Sbjct: 2 ETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPT 61 Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 P DERLTTVSAQ+ L V ++ +D AA ILQ LD Sbjct: 62 PVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDE 108 >gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH] Length = 140 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 6/139 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITT--ENIAAFI 72 Q I ID G KRIG A+++ RF P + Q L + + + Sbjct: 1 MQYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IG P + + +V S FV +I + VP DE TT + L ++ + + Sbjct: 61 IGFP-HFHYQSSIQV-SIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117 Query: 133 IQKVDSIAAALILQEVLDR 151 + D++AA LIL+ L++ Sbjct: 118 KKAKDTLAATLILERFLNQ 136 >gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803] gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803] Length = 159 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G +RIGLA DP P L R Q L + N+ ++GLPL+ Sbjct: 2 LSLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDD 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130 G + H + + R + +P F +E ++ +A++ + + S + Sbjct: 62 QGQRTDQAHHCHRYGQRIA-RDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112 >gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 146 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77 I +ID+G KRIG+A S R ++RK Q A + + + ++G+P Sbjct: 6 IIAIDIGLKRIGVAKS--IRGIPLCLEPILRKNRNQAANAVRTLVLELQANVLVVGIPFV 63 Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-- 131 N S + FV +++ + + VF+DE ++ A + L D + +K Sbjct: 64 DDVSKANDSICAMQRRIKHFVG-LLELESKIEIVFFDESFSSKEALEKLDDKKMRKKAHS 122 Query: 132 RIQKVDSIAAALILQEVL 149 + +DS+AA +IL+ L Sbjct: 123 KDGSLDSLAALVILERYL 140 >gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor] gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor] Length = 214 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLA+ G P L + + L LL + IIGLP++ Sbjct: 75 LGVDLGDARTGLAVG-RGITLPRPLTVLKLR-GQKLELTLLDVARQQEADELIIGLPVSA 132 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ V + + + DE T+ A + +I V + R + D Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192 Query: 138 SIAAAL 143 + AA + Sbjct: 193 AYAAVV 198 >gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107] gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107] Length = 151 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 S+D+G KRIGLA D P P L R + L L ++ ++GLPL+ Sbjct: 2 LSLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDS 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 G + + + + + + +P + +E +T +A ++ + + + + Sbjct: 62 AGQPTVQAVHCQRYGLRLA-QTLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 112 >gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 124 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID+G KRIG+A+ R+ P+ ++RK Q A ++ + + ++G+PL Sbjct: 2 SIMAIDVGLKRIGVAL--AVRQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 SE FV + + V+ DE +++ A +I + +R ++D Sbjct: 60 G-GPSEDEMRRRIEHFVSLL---EFDGEVVYQDEAMSSFEASEIYAES-----RRDGRLD 110 Query: 138 SIAAALILQEVL 149 SIAA +IL+ L Sbjct: 111 SIAAMIILKRYL 122 >gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp. jejuni 1336] gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp. jejuni 1336] Length = 127 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A L + +K+ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA +++++ Sbjct: 116 AAFIMIKDYF 125 >gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 260.94] gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 260.94] gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 127 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A + I +K+ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEALEYGIA---DTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA +++++ Sbjct: 116 AAFIMIKDYF 125 >gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus ATCC 51449] gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 138 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 N I + D+G KRIGLA + P P ++R Q A EL + + NI ++G+ Sbjct: 2 NHCILACDVGLKRIGLAT--LKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKKR 132 P +G E + + H + F +E T+ +A Q L N +R ++ Sbjct: 60 P---SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116 Query: 133 IQKVDSIAAALILQEVL 149 ++DS++A ILQ + Sbjct: 117 DGRIDSLSACEILQRYI 133 >gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796] gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796] Length = 140 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 ID G +GL+ISDP + P + R + ++ I +++ A ++G PL Sbjct: 2 RYLGIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + S + + V + +DER +++ A L + K K+ Sbjct: 62 RTD-FSSASSKSILKVKKKL--ETIGVKVILFDERYSSIEA---LKLQKILGNKDKGKIH 115 Query: 138 SIAAALILQEVLDRISFLESSKG 160 IA++++L+ LD +S + + G Sbjct: 116 EIASSIVLKSFLDFLSNTKKNIG 138 >gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 127 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A L + +K+ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 +A +++++ Sbjct: 116 SAFIMIKDYF 125 >gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] Length = 238 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+AIS P L + + LL E + FIIGLP + Sbjct: 68 LGVDLGLSRTGVAIS--KGYTVKPLTVLK-SRGQKLETRLLEIAEEEEVDEFIIGLPRSS 124 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E + + R+ + + +DE TT A +I M +S+ +R + D Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 184 Query: 138 SIAAALILQEVL 149 + AA ++L+ Sbjct: 185 AYAAVILLERYF 196 >gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. doylei 269.97] gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. doylei 269.97] Length = 129 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A + I + +K+ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKKALEYGIA---NTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA +++++ Sbjct: 116 AAFIMIKDYF 125 >gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni RM1221] gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni CF93-6] gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp. jejuni CG8486] gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni RM1221] gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp. jejuni CG8486] gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp. jejuni 81116] gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp. jejuni CG8421] gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp. jejuni M1] gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp. jejuni S3] gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni 327] Length = 127 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A L + +K+ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 +A +++++ Sbjct: 116 SAFIMIKDYF 125 >gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis MIT 98-5491] gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491] gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491] gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 133 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 Q I ++D+G KRIG+A S P P ++RK Q A E+ I I I+G+ Sbjct: 1 MQSILALDIGLKRIGIAKS--IHNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGI 58 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P + + + FV +++ + F DE ++ A Q + + KK+ Sbjct: 59 PKE-SETAAEMERRIKHFVA-LLEIPDNIKIHFVDESFSSFEALQRM-QGSKKSKKKDGT 115 Query: 136 VDSIAAALILQEVL 149 +DS+AA +IL+ L Sbjct: 116 LDSLAAMIILERFL 129 >gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Streptococcus pyogenes M49 591] Length = 83 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77 +D+G+K +G+AISDP A + +K L + + F+IGLP Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60 Query: 78 NMNGSEGPRVHSTRAFV 94 NMN + GPRV ++ + Sbjct: 61 NMNNTNGPRVDASITYG 77 >gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129] gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 140 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 6/139 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITT--ENIAAFI 72 Q I ID G KRIG A+ + RF P + Q L + + + Sbjct: 1 MQYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 IG P + + +V S FV +I + VP DE TT + L ++ + + Sbjct: 61 IGFP-HFHYQSSIQV-SIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117 Query: 133 IQKVDSIAAALILQEVLDR 151 + D++AA LIL+ L++ Sbjct: 118 KKAKDTLAATLILERFLNQ 136 >gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp. jejuni 414] gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp. jejuni 414] Length = 127 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A L + +++ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFIDESGTSKEA---LKYGVANAREKDGKLDSL 115 Query: 140 AAALILQEVL 149 AA +++++ Sbjct: 116 AAFIMIKDYF 125 >gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 137 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLN 78 ID G RIG AISD F+ + ++ + + I FIIG PLN Sbjct: 4 LGIDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLN 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 G + F+ ++ ++ +E ++ A +IL N+ KK+ K D Sbjct: 64 SRGEKTKTCLLIDEFIIHL-EKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDM 122 Query: 139 IAAALILQEVLD 150 +AA +ILQ+ LD Sbjct: 123 LAAKIILQDYLD 134 >gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis] gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis] Length = 239 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 IDLG R GLAIS P L + + LL E FIIGLP + Sbjct: 77 LGIDLGLSRTGLAIS--KGFSFKPLTVLELR-GQKLETRLLEIAEDEEADEFIIGLPKSW 133 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E + + R+ + R DE T+ A +I++ +S+ R + +D Sbjct: 134 DGKETSQCNKVRSVAGRIAVRAAERGWRVYLQDEHGTSTDATYWMINVGLSKGARQKSID 193 Query: 138 SIAAALILQEV 148 + AA ++L+ Sbjct: 194 AYAAVMVLERY 204 >gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli RM2228] gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli JV20] gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli RM2228] gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli JV20] Length = 126 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ + A P ++RK Q A E+ + + +I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC--IDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGG 61 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A L + +K+ K+DS+ Sbjct: 62 S-SEEEMTRRIKHFVSLL---EFDKEIRFVDESGTSKEA---LGYGVANTRKKDAKLDSL 114 Query: 140 AAALILQEVL 149 AA +++++ Sbjct: 115 AALIMIKDYF 124 >gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 81-176] Length = 127 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + E + FV + + F DE T+ A L + +K+ K+DS+ Sbjct: 63 SREE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 +A +++++ Sbjct: 116 SAFIMIKDYF 125 >gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 71 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+AI A P P + + T + + I+GLPL Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGP 85 NM+G+E P Sbjct: 64 NMDGTEQP 71 >gi|297626344|ref|YP_003688107.1| Holliday junction resolvase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922109|emb|CBL56677.1| Holliday junction resolvase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 181 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 3/141 (2%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G RIG+A D A+P + + T L + + I+G+P ++ Sbjct: 25 LCLDWGKARIGVAACDRDGLLAYPVETVA--NGSGTMKRLKALVDEYEPFEIIMGMPTDL 82 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G +G + + R ++ DERLTT +A + L + R +D Sbjct: 83 RGRQGIAASAMIDNARR-VTRALHRDVRLVDERLTTAAATRRLAAAGRDSRHRRSVIDQA 141 Query: 140 AAALILQEVLDRISFLESSKG 160 AA IL++ ++ + G Sbjct: 142 AAVAILEQAIEMEKRSGHAPG 162 >gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera] Length = 213 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 25/132 (18%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R GLA+S P + FIIGLP++ Sbjct: 67 LGVDLGMSRTGLALS--KGFSVRPLS---------------------EVDEFIIGLPVSD 103 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E P+ + R+ + R DE T+ A +IDM S+ R +D Sbjct: 104 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSID 163 Query: 138 SIAAALILQEVL 149 + AA ++L+ Sbjct: 164 AYAAMMVLERYF 175 >gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826] Length = 127 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 11/134 (8%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID+G KRIGLA P ++RK Q A ++ + ++G+ Sbjct: 2 REKFMAIDVGLKRIGLAFG--FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGV 59 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ + SE FV + + V+ DE ++ A +I D +R + Sbjct: 60 PIGGS-SEDEMRRRIEHFVSLL---DMQANIVYQDEAFSSSEASEIYTDT-----RRDGR 110 Query: 136 VDSIAAALILQEVL 149 +DS++AA+IL+ L Sbjct: 111 LDSVSAAIILKRYL 124 >gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii] gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii] Length = 186 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 6/146 (4%) Query: 3 ILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 IL L KSL+ + ID G +R G+A++ P + + K +LL Sbjct: 8 ILPNARLKKSLETRKLRRSVGIDYGLERTGIAVT-FCGLAPRPLS-VSKLKGDNLIKKLL 65 Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSA 118 S E FI+GLP + + E + + TR F + + V DE +T+ A Sbjct: 66 SVAKKEKADEFIVGLPRSWDAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDA 125 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALI 144 + +I ++K R +VD+ AA L+ Sbjct: 126 LEFMIYRGSTKKSRRLEVDAYAAVLM 151 >gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 130 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +IDLG KRIG+A + P + P ++RK TQ A EL + + + ++G+P Sbjct: 2 IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 SE R F + F DE ++ A + + + DS Sbjct: 61 -GASEEEMSRRIRHFASLL---DFDGEIKFQDESFSSAEAAEFASKC-AKGGGKDPRFDS 115 Query: 139 IAAALILQEVLDRI 152 IAA +ILQ L + Sbjct: 116 IAATIILQRFLASM 129 >gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis OB47] gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis OB47] Length = 172 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 6/120 (5%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76 I +D+G R+G+AISDP + A P + K EL T NI +IG P Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPLMTIELKN-KDLFDELDKIFHTYNIEKVVIGYPL 60 Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 L+ + + ++ + + I + V V WDER +T + ++++ + +K+R Q Sbjct: 61 SKLHPDLKD-EKLKKIDE-ISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRRQ 118 >gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN] gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN] Length = 138 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ID G KRIGL+I++ R A + + L ++ E+I +IGL Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNI---ICTLYKYLKYEDIDTIVIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKR 132 P+ + S P + F+ + ++ + DER T+ A LI+ + KK Sbjct: 58 PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117 Query: 133 IQKV--DSIAAALILQEVL 149 + D I+A ++LQE + Sbjct: 118 KNFLDKDKISATILLQEYI 136 >gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701] gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701] Length = 148 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 D+G KRIGLA D P P L R + L L ++ ++GLPL+ G Sbjct: 2 DVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAGQ 61 Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 + + + + + + +P + +E +T +A ++ + + + + Sbjct: 62 PTVQAVHCQRYGLRLA-QTLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 109 >gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri GWSS] gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein [Candidatus Sulcia muelleri GWSS] Length = 138 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ID G KRIGL+I++ R A + + L ++ E+I +IGL Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNI---ICTLYKYLKYEDIDTIVIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P+ + S P + F+ + ++ + DER T+ A LI+ + + + Sbjct: 58 PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117 Query: 136 -----VDSIAAALILQEVL 149 D I+A ++LQE + Sbjct: 118 QNFLDKDKISATILLQEYI 136 >gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 84-25] gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni subsp. jejuni 84-25] gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 127 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P Sbjct: 4 LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGG 62 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 + SE + FV + + F DE T+ A L + +K+ K+DS+ Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115 Query: 140 AAALILQEVL 149 +A +++++ Sbjct: 116 SAFIMIKDYF 125 >gi|319787649|ref|YP_004147124.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis 11-1] gi|317466161|gb|ADV27893.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis 11-1] Length = 156 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 5/139 (3%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 P + D+G++RIG+A+ + L + I+ Sbjct: 11 SPEAIVLGFDVGSRRIGVAVGSAFGGA-RAVAVVNVHAAGPDWAALDRLRSQWGPGGLIV 69 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS---AQQILIDMNVSRK 130 G PL ++G + P RA + + + +P DER ++V R+ Sbjct: 70 GDPLTLDGEDQPARRRARA-FAHALRERYGLPVGMVDERSSSVEAAQRFARARASGTRRR 128 Query: 131 KRIQKVDSIAAALILQEVL 149 + + +D+ AAA+I++ L Sbjct: 129 RDAENLDAEAAAVIIERWL 147 >gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 124 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID+G KRIG+A+ + P+ ++RK Q A ++ + + ++G+PL Sbjct: 2 SIMAIDVGLKRIGVAL--AVGQTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPL 59 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 + SE FV + + V+ DE +++ A +I + +R ++D Sbjct: 60 GGS-SEDEMRRRIAHFVSLL---EFDGEVVYQDEAMSSFEASEIYAEG-----RRDGRLD 110 Query: 138 SIAAALILQEVL 149 SIAA ++L+ L Sbjct: 111 SIAAMIVLKRYL 122 >gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37] gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37] gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium JCVI-1.0] Length = 138 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITT-ENIAAFIIGL 75 I +ID G K+IG AI++ ++ K +TA+ L + +IG Sbjct: 4 ILAIDFGLKKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGF 63 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P S+ + +++++ +P + DE TT + + LI M++ K + Sbjct: 64 PKFHYYSD---IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKA 120 Query: 136 VDSIAAALILQEVL 149 D++AA LIL+ Sbjct: 121 KDTLAAVLILERFF 134 >gi|330872143|gb|EGH06292.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 84 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133 +PLNM+G+ F + + + V DERLTT A+ + + R Sbjct: 1 MPLNMDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRN 59 Query: 134 QKVDSIAAALILQEVLDRISFL 155 VD+IAAAL+LQ LD L Sbjct: 60 NPVDAIAAALLLQGWLDEHPEL 81 >gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211] gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus marinus str. MIT 9211] Length = 145 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 ++ + S+D+G +RIG+A DP + R A +L ++ IIGL Sbjct: 6 SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+ G E + + N+ + +P + +E +T A Q N R K Sbjct: 66 PLSDLGKETKQSSYCYTYGINIAKE-LNLPLAWVNEHSSTWEAGQRFKLQN----DRSGK 120 Query: 136 VDS 138 +DS Sbjct: 121 LDS 123 >gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal Fragment) Length = 98 Score = 90.0 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL Sbjct: 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPL 61 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 + E + V + R V WDER TT Sbjct: 62 RTDLKESAQAGKVLPLVEALRAR--GVEVELWDERFTTK 98 >gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 160 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 29/160 (18%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74 I ID G KR+G+A + P ++RK Q + +L + + ++G Sbjct: 3 IFGIDFGLKRLGVAK--VVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60 Query: 75 LPLNMN--------------------GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLT 114 +P +M+ G + H + ++ DE + Sbjct: 61 MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120 Query: 115 TVSAQQILIDMNVSRKK---RIQKVDSIAAALILQEVLDR 151 + A + L+D +++K + +DSI+A +IL+ L+R Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160 >gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase [Arabidopsis thaliana] gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana] Length = 254 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +DLG R G+AIS P L + + LL E FIIGLP + Sbjct: 84 LGVDLGLSRTGIAIS--KGYTVKPLTVLK-SRGQKLETRLLEIAEEEEADEFIIGLPRSS 140 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +G E + + R+ + + +DE TT A +I M +S+ +R + D Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 200 Query: 138 SIAAALILQEVL 149 + AA ++L+ Sbjct: 201 AYAAVILLERYF 212 >gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP] gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP] Length = 159 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 14/132 (10%) Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81 +D+ +RIG A+S R A R + R+++ + + ++GLPL +G Sbjct: 36 LDVSKRRIGFAVSQ--GRLAFGRGSVERRRLPLDLKAVRLKVEDTGAEVLVLGLPLRTDG 93 Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141 + P R+F + ++ + DER TT A R + +D AA Sbjct: 94 AHSPAADRVRSFGRVLEEKGYR--VEYQDERFTTQRA----------RALGAEDLDEAAA 141 Query: 142 ALILQEVLDRIS 153 IL+ L R++ Sbjct: 142 VQILELWLTRMA 153 >gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus subsp. fetus 82-40] gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp. fetus 82-40] Length = 124 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID+G KRIG+A++ P ++RK Q A + L + +N ++GLP Sbjct: 2 IVAIDVGLKRIGVAVA-VLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKG 60 Query: 79 MNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 GS E + F+ + ++ DE ++ A + +S+ + + D Sbjct: 61 --GSCEDEMERRIKHFISLV---GFDSEIIYVDEAYSSCEASE------LSKDSKDGRFD 109 Query: 138 SIAAALILQEVLD 150 SIAA +IL+ L+ Sbjct: 110 SIAAMVILKRYLN 122 >gi|146329693|ref|YP_001209982.1| hypothetical protein DNO_1098 [Dichelobacter nodosus VCS1703A] gi|146233163|gb|ABQ14141.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 129 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 9/131 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID+GT G+AI A P A + + + +IGLP Sbjct: 5 VLGIDVGTYHTGVAIGQSVTGLAKPLQRFNLPLKQVHADTFSALVQQWKVNCIVIGLPSL 64 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G + P I VP F DE LT+ +AQ + K I K DS Sbjct: 65 ADGKKHPLSDEIHRLADECIK-LYGVPVHFIDETLTSHAAQ-------MRFPKTIDK-DS 115 Query: 139 IAAALILQEVL 149 AAA+I+++ L Sbjct: 116 AAAAVIVEDFL 126 >gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10] gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10] Length = 134 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NKSYTDTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM 7454] gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM 7454] Length = 76 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 MN + GP+ +FV +++ ++ + + DER+TT+ + ++L+DM+V R+ R + +D Sbjct: 1 MNNTLGPQAMKVISFV-DLLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59 Query: 139 IAAALILQEVLDRIS 153 IAA+ ILQ LD S Sbjct: 60 IAASFILQTYLDGRS 74 >gi|325335422|gb|ADZ11696.1| Resolvase, holliday junction-type, YqgF-like protein [Riemerella anatipestifer RA-GD] Length = 119 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I +ID G R G+A +D + A + ++ L +I + A ++G Sbjct: 1 MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSF---LSEYIHNNAVEAVVVGY 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126 P+++ G+ S F+ + + DER T+ A + Sbjct: 58 PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSG 108 >gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori Gambia94/24] Length = 134 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E ++V A + L + KK + + Sbjct: 58 -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|261839186|gb|ACX98951.1| Holliday junction resolvase-like protein [Helicobacter pylori 52] Length = 134 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFEGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32] Length = 134 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF DE +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora] gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora] Length = 141 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +D+G RIG+A D P L R L L I+ ++ A +IG+PL Sbjct: 9 SILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVEALVIGIPL 68 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 N + R + ++ + + +P + +E +T S D + ++D Sbjct: 69 NDLAQITKQAIYCRRYGKHLA-QTLRLPVAWVNENGSTWS----TSDQYKIYNDKSGRLD 123 Query: 138 SIAAALILQEVLDRIS 153 S+ AAL+L++ + + Sbjct: 124 SMVAALLLEQWIKERN 139 >gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis SK1302] gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis SK1302] Length = 61 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 98 IDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDR 151 ++ +P + DERLTTV+A+++LI+ ++SR KR + +D +AA LILQ LDR Sbjct: 5 LEELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59 >gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori India7] Length = 134 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R+ Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E ++V A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLEHLGNKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1] gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1] Length = 206 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 24/138 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+A L +K + L FI I GLPL+ Sbjct: 2 IVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T A DERLTT ++I +K D+ Sbjct: 52 MSGKYTQQTFKTIAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKKDDA 97 Query: 139 IAAALILQEVLDRISFLE 156 ++AALI Q + S E Sbjct: 98 VSAALIFQSFFENSSVCE 115 >gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori Shi470] gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori Shi470] Length = 134 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACGILERY 126 >gi|317181677|dbj|BAJ59461.1| Holliday junction resolvase-like protein [Helicobacter pylori F57] Length = 134 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +N+ ++G P Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADMNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1] gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5] gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5] gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1] Length = 131 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 13/136 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIGLAI ++ P + R Q +LELL + T+ I+GLP Sbjct: 2 IIACDIGLKRIGLAIY--AQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135 ++TR V + I+ + P ++ +E ++V A L ++ ++++ K Sbjct: 58 ------HACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111 Query: 136 VDSIAAALILQEVLDR 151 +DS+AA IL+ L + Sbjct: 112 LDSLAACEILRRYLAQ 127 >gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori HPKX_438_CA4C1] Length = 156 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%) Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 DL S+ + I D+G KRIG+A+ P ++R Q + +L + +N Sbjct: 14 DLTSSIACKRLIIG-DVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKN 70 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 I ++G P N S F+ + VF +E +++ A + L + Sbjct: 71 IQVLVVGKP---NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGK 124 Query: 128 SRKK---RIQKVDSIAAALILQEV 148 K+ + ++DS++A IL+ Sbjct: 125 KNKRLATKDGRLDSLSACRILERY 148 >gi|307637029|gb|ADN79479.1| hypothetical protein hp908_0350 [Helicobacter pylori 908] gi|325995622|gb|ADZ51027.1| Holliday junction resolvase like protein [Helicobacter pylori 2018] gi|325997218|gb|ADZ49426.1| Putative holliday junction resolvase [Helicobacter pylori 2017] Length = 134 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E ++V A L + K+ + + Sbjct: 58 -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYDNLEHLGKKNKRLATKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|261837774|gb|ACX97540.1| hypothetical protein KHP_0327 [Helicobacter pylori 51] Length = 134 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 ++ + ++D VF +E +++ A + L + K+ + + Sbjct: 58 --NESYADTNACIEYFIKLLD--FKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|78213389|ref|YP_382168.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605] gi|146325620|sp|Q3AIG9|RUVX_SYNSC RecName: Full=Putative Holliday junction resolvase gi|78197848|gb|ABB35613.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605] Length = 158 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I S+D+G +RIGLA D P L R + + L + ++ ++GLPL Sbjct: 7 SILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLQAHCCERSVQGLVVGLPL 66 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 + G + + + + + +E +T +A +Q + + S + Sbjct: 67 DAAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAAGEQFGLKGDRSGR 119 >gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179] gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179] Length = 127 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 12/133 (9%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 D+G KRIGLA+ P P ++R Q +L F+ + ++GLP Sbjct: 2 VGCDVGLKRIGLALYTQETIL--PMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP--- 56 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136 TRA V + I+ + P + DE ++ AQ+ + + ++++ +K + Sbjct: 57 ----NACYTDTRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGIL 112 Query: 137 DSIAAALILQEVL 149 DS+AA ++L+ L Sbjct: 113 DSLAACILLERYL 125 >gi|217031561|ref|ZP_03437066.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128] gi|298736721|ref|YP_003729251.1| putative Holliday junction resolvase [Helicobacter pylori B8] gi|216946761|gb|EEC25357.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128] gi|298355915|emb|CBI66787.1| putative holliday junction resolvase [Helicobacter pylori B8] Length = 134 Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30] Length = 134 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|308061685|gb|ADO03573.1| Holliday junction resolvase-like protein [Helicobacter pylori Cuz20] Length = 134 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8] gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 218 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 24/141 (17%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ++D G ++ G+A L +K + L FI I GL Sbjct: 11 GKVIVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGL 60 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 PL+M+G + T A DERLTT ++I ++ Sbjct: 61 PLSMSGKYTQQTFKTVAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKR 106 Query: 136 VDSIAAALILQEVLDRISFLE 156 D+++AALI Q + S E Sbjct: 107 DDAVSAALIFQSFFENSSVCE 127 >gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38] gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38] Length = 134 Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E +++ A L + K+ + + Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|315586327|gb|ADU40708.1| Holliday junction resolvase family protein [Helicobacter pylori 35A] Length = 134 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLTIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198] gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198] Length = 131 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 + D+G KRIG+A P ++R Q A +L + +N I+G+P + Sbjct: 2 IACDIGLKRIGIAG--LIEGIILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSG 59 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136 N + R FV + + ++ +E T++ A+Q L + R++ QK + Sbjct: 60 NAEDTKR--RIMFFVSLL---ETSAKILYVNEDCTSLEARQDLSHLKKQRRQNAQKNGRI 114 Query: 137 DSIAAALILQEVL 149 DS+AA ILQ L Sbjct: 115 DSLAACKILQRYL 127 >gi|317177150|dbj|BAJ54939.1| Holliday junction resolvase-like protein [Helicobacter pylori F16] Length = 134 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2] gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10] gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2] gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10] Length = 206 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 24/138 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+A L +K + L FI I GLPL+ Sbjct: 2 IVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T A DERLTT ++I ++ D+ Sbjct: 52 MSGKYTQQTFKTVAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKRDDA 97 Query: 139 IAAALILQEVLDRISFLE 156 ++AALI Q + S E Sbjct: 98 VSAALIFQSFFENSSVCE 115 >gi|308063196|gb|ADO05083.1| Holliday junction resolvase-like protein [Helicobacter pylori Sat464] Length = 134 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACGILERY 126 >gi|308182507|ref|YP_003926634.1| Holliday junction resolvase-like protein [Helicobacter pylori PeCan4] gi|308064692|gb|ADO06584.1| Holliday junction resolvase-like protein [Helicobacter pylori PeCan4] Length = 134 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACGILERY 126 >gi|210134529|ref|YP_002300968.1| Holliday junction resolvase-like protein [Helicobacter pylori P12] gi|226725526|sp|B6JKR0|RUVX_HELP2 RecName: Full=Putative Holliday junction resolvase gi|210132497|gb|ACJ07488.1| holliday junction resolvase [Helicobacter pylori P12] Length = 134 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E +++ A L + K+ + + Sbjct: 58 -NESYADTNVRIEHFI-KLVD--FTGEIVFINEDNSSIEAYDNLEHLGRKNKRLATKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83] Length = 134 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ + VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|15611385|ref|NP_223036.1| Holliday junction resolvase-like protein [Helicobacter pylori J99] gi|32130075|sp|Q9ZMA5|RUVX_HELPJ RecName: Full=Putative Holliday junction resolvase gi|4154855|gb|AAD05908.1| putative [Helicobacter pylori J99] Length = 134 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + ++I ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E ++V A + L + K+ + + Sbjct: 58 -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLEHLGKKNKRIATKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|260436612|ref|ZP_05790582.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414486|gb|EEX07782.1| conserved hypothetical protein [Synechococcus sp. WH 8109] Length = 158 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 2/114 (1%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I S+D+G +RIGLA D P L R + + L + ++ ++G PL Sbjct: 7 SILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLRAHCRERSVQGLVVGFPL 66 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130 + G + + + + + +E +T +A +Q + + S + Sbjct: 67 DDAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAAGEQFGLTGDRSGR 119 >gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1] gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 136 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D+ RIG A+S R A R + RK++ + + ++GLPL Sbjct: 17 TVLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPL 74 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 +G P RAF ++D+ + DER TT A+ + Sbjct: 75 RTDGKPSPTADRVRAFGRVLMDKGYT--VEYQDERFTTQRARAL 116 >gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori Lithuania75] Length = 134 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R+ Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|208434282|ref|YP_002265948.1| Holliday junction resolvase-like protein [Helicobacter pylori G27] gi|226725527|sp|B5ZAA2|RUVX_HELPG RecName: Full=Putative Holliday junction resolvase gi|208432211|gb|ACI27082.1| Holliday junction resolvase-like protein [Helicobacter pylori G27] Length = 134 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E +++ A + L + K+ + + Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSIEAYENLEHLGRKNKRLATKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|108562763|ref|YP_627079.1| Holliday junction resolvase-like protein [Helicobacter pylori HPAG1] gi|124107441|sp|Q1CUG7|RUVX_HELPH RecName: Full=Putative Holliday junction resolvase gi|107836536|gb|ABF84405.1| hypothetical protein HPAG1_0338 [Helicobacter pylori HPAG1] Length = 134 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R+ Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 N S F+ ++D VF +E +++ A + L + K + + Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSIEAYENLEHLGKKNKWLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1] gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1] Length = 79 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%) Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 K E+ I ++GLP+ + G EG + TR FV + + + VF Sbjct: 2 KNSPSVFEEIKKVINEYKPKKIVVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFE 61 Query: 110 DERLTTVSAQQI 121 DER T+ A++ Sbjct: 62 DERFTSQMAEKD 73 >gi|34558179|ref|NP_907994.1| Holliday junction resolvase-like protein [Wolinella succinogenes DSM 1740] gi|34483898|emb|CAE10894.1| conserved hypothetical protein-Predicted endonuclease [Wolinella succinogenes] Length = 127 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 8/131 (6%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+G KR+G+A A P ++RK Q A +L + + + G+P Sbjct: 2 IIAVDIGLKRLGVA--QYAAGVALPLDPILRKNRHQAARDLDLLLKEKGAQKLVAGIPKE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + SE R F+ + + F DE ++ A ++L + R+ +DS Sbjct: 60 GSSSE-EMERRIRHFIGLL---EFRGEVCFVDESYSSKEAFELLRGRSRDRRDGK--LDS 113 Query: 139 IAAALILQEVL 149 ++A +IL+ L Sbjct: 114 LSALVILERYL 124 >gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO] gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO] Length = 214 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 23/139 (16%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G R GLAI + + A + +KKV + I F++GLPL+ Sbjct: 2 IVAVDYGDARCGLAIGE---KLARKIMTVEKKKVISEISRIP------FINCFVVGLPLS 52 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + F + +R+ DERLT+ S K + +D Sbjct: 53 MSGRYSQQTFKAIEFAEKL-NRRFKKRVYLIDERLTS------------SIFKNRENIDG 99 Query: 139 IAAALILQEV-LDRISFLE 156 + AA I ++ ++ F E Sbjct: 100 LCAAEIFEKFVFSKMKFHE 118 >gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori 26695] gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 134 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 13/134 (9%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A P ++R Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQ 134 T A + + I VF +E +++ A + L + K+ + Sbjct: 58 -----HESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDG 112 Query: 135 KVDSIAAALILQEV 148 ++DS++A IL+ Sbjct: 113 RLDSLSACRILERY 126 >gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM 4359] gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM 4359] Length = 207 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 24/133 (18%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G ++ G+A L + V EL F+ N + G+PL+ Sbjct: 2 IVAIDYGERKCGVAFG----------KILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G + T + + DERLTT A VS++ D+ Sbjct: 52 MSGRYSQQTFKTVEVALSFSKKY---ETYLCDERLTTRIA------SKVSKRD-----DA 97 Query: 139 IAAALILQEVLDR 151 ++AALI Q ++ Sbjct: 98 VSAALIFQSFVEN 110 >gi|109947527|ref|YP_664755.1| Holliday junction resolvase-like protein [Helicobacter acinonychis str. Sheeba] gi|109714748|emb|CAJ99756.1| putative Holliday junction resolvase [Helicobacter acinonychis str. Sheeba] Length = 134 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R+ Q + +L + +NI ++G P Sbjct: 2 ILACDVGLKRIGIAM--LLNGIILPLEAILRQNRNQASRDLSDLLKEKNIQVLVVGKP-- 57 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 SE + R H + VF +E +++ A + L + K + + Sbjct: 58 ---SENYADTNIR-IGHFIKLVDFKGEIVFINEDSSSIEAYENLEYLGRKNKWLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|150020203|ref|YP_001305557.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429] gi|149792724|gb|ABR30172.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429] Length = 202 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 19/137 (13%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G K+ G AI + + K T EL + + ++GLPL+ Sbjct: 2 ILALDYGEKKTGYAIGNE----------FIAKSGTIKTSELKNLLFQFK--KIVLGLPLS 49 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD- 137 M+G+ + + F + +K+ + DERLTT A+ + + + R +D Sbjct: 50 MSGNYSTQSYKVLKFAFKL--KKMGLNVFLIDERLTTKMAEVFQANDDDAFSARQIFIDY 107 Query: 138 ----SIAAALILQEVLD 150 SIA L++ L+ Sbjct: 108 IENPSIAQEFYLEDYLE 124 >gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str. Illinois] gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 159 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ + ++ I SID G + IG+A+SDP R+ A ++ Sbjct: 1 MITFDLQKFLGAIGTGG-IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIM 59 Query: 61 SFITTENIAAFIIGLP---LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 ++ + I+G P + NG +HS F + + P + DE +T Sbjct: 60 KVVSDFS--GIIVGTPFSHIRNNG----WLHSIDKFAQKLSE-ITKKPILMCDESSSTSD 112 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 +L ++SR ++ + D IAA IL++ L Sbjct: 113 VMVLL--GSLSRSRQKKWKDKIAACCILEKTL 142 >gi|308184138|ref|YP_003928271.1| Holliday junction resolvase-like protein [Helicobacter pylori SJM180] gi|308060058|gb|ADO01954.1| Holliday junction resolvase-like protein [Helicobacter pylori SJM180] Length = 134 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I + D+G KRIG+A+ P ++R Q + +L + ++I ++G P Sbjct: 2 ILACDVGLKRIGIAM--LLNGVVLPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPSE 59 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135 R+ V VF +E +++ A + L + K+ + + Sbjct: 60 NYADTNIRIEHFIKLVD------FKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113 Query: 136 VDSIAAALILQEV 148 +DS++A IL+ Sbjct: 114 LDSLSACRILERY 126 >gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str. Langford 1] gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str. Langford 1] Length = 143 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITT--ENIAAFII 73 + S+D+GTK++G+A+S + P + +L + + E I +I Sbjct: 2 RVLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKTELRNFWEEIGVAVI 61 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G SEG V S V M+ F E +++ + L +N S K Sbjct: 62 GKA-----SEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSSNKAR 116 Query: 134 QKVDSIAAALILQEVLDRIS 153 +K+DS +A +IL++ D I+ Sbjct: 117 EKLDSYSALIILKDYFDSIN 136 >gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri CARI] gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia muelleri CARI] Length = 138 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 I ID G KRIGL+I++ R A + + T L + E+I +IGL Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLISTLEMYLKY---EDIDTIVIGL 57 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133 P+ P + F+ + + + DER T+ A L++ ++K Sbjct: 58 PIKYYNYLFPIEKKIKKFIKIIKYKYPNLIIKRLDERFTSKIANYYLLNSVFKKKKRKNK 117 Query: 134 QKVDSIAAALILQEVL 149 +D I+A L+LQ+ + Sbjct: 118 SLLDKISATLLLQDYI 133 >gi|94984533|ref|YP_603897.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM 11300] gi|94554814|gb|ABF44728.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM 11300] Length = 232 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 14/131 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D+ RIG A+S + A R + RK++ + + ++GLPL Sbjct: 105 ILALDVSKSRIGFAVS--AGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPLR 162 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ P RAF + D+ + DER TT A + L + D Sbjct: 163 TDGAHSPSADRVRAFGKILADKGYR--VAYQDERFTTQRA-RALGTRDE---------DE 210 Query: 139 IAAALILQEVL 149 AA IL+ L Sbjct: 211 AAAVQILELYL 221 >gi|289772787|ref|ZP_06532165.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289702986|gb|EFD70415.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 172 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74 ++D+G RIG+A DP A P + + V L + ++G Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74 Query: 75 LP 76 LP Sbjct: 75 LP 76 >gi|213863107|ref|ZP_03386362.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 55 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%) Query: 99 DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 + V DERL+TV A+ L + R KVDS +A +IL+ ++ Sbjct: 1 HGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQ 53 >gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53] Length = 125 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 30 GLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLNMNGSEGPRVH 88 G AISD F+ + ++ + + I FIIG PLN G + Sbjct: 2 GFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTCL 61 Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148 F+ ++ ++ +E ++ A +IL N+ KK+ K D +AA +ILQ+ Sbjct: 62 LIDEFIIHL-EKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDMLAAKIILQDY 120 Query: 149 LD 150 LD Sbjct: 121 LD 122 >gi|169835835|ref|ZP_02869023.1| DNA integration/recombination/invertion protein [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +D+G RIG+A DP A + R K+ + + E ++G+ Sbjct: 1 MRKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTKIDP-IARIKEILDDEGTKKIVVGM 59 Query: 76 PLNMNGS 82 P +++GS Sbjct: 60 PKSLDGS 66 >gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana CCMP1335] gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana CCMP1335] Length = 423 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 12/114 (10%) Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK----- 101 +++ T ++++ +E + ++GLPL+ NGS + TR F + ++ Sbjct: 226 IIQYNNTLLCNTIINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMG 285 Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-------QKVDSIAAALILQEV 148 WDER T+ A ++ ++R +RI +D AA +IL+ Sbjct: 286 YNANVTLWDERYTSKEAASRIVGEAIARNRRIPSASDLNGALDDEAACIILEHY 339 >gi|297181477|gb|ADI17664.1| predicted endonuclease involved in recombination (possible holliday junction resolvase in mycoplasmas and B. subtilis) [uncultured gamma proteobacterium HF0130_23I23] Length = 128 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 17/136 (12%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + S+D GTK+IG+ I++ + P P L K L I IIG P Sbjct: 8 VLSLDFGTKKIGVCIAETYTGQSSPLPVL--KNDEHLFDNLDKIINEWLPNLCIIGKPKE 65 Query: 79 MNGSEGPRVHST-RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 M R F +R + +E T+ + VS++ + Q+ D Sbjct: 66 MK----ENFEEAHRNFFKTFKER-YEISISEVNEDFTSQA---------VSKEHKKQEYD 111 Query: 138 SIAAALILQEVLDRIS 153 S +AALI +E ++ + Sbjct: 112 SYSAALIFEEWFNQNN 127 >gi|255660339|ref|ZP_05405748.1| hypothetical protein MgenG_02399 [Mycoplasma genitalium G37] Length = 128 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITT-ENIAAFIIGLPLNMNGSE 83 K+IG AI++ ++ K +TA+ L + +IG P S+ Sbjct: 2 KKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGFPKFHYYSD 61 Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143 + +++++ +P + DE TT + + LI M++ K + D++AA L Sbjct: 62 ---IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKAKDTLAAVL 118 Query: 144 ILQEVL 149 IL+ Sbjct: 119 ILERFF 124 >gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95] gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95] Length = 230 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ID GT G+AI P+ + +K LE L + + + GLP++M+ Sbjct: 11 GIDYGTSNCGIAILKQDVNIPLPKETIKSEK----LLEFLVSLDLSHDDLIVFGLPISMS 66 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 G + + I K+ F DERLTT S + VS KK + D + Sbjct: 67 GRYSKQSFLSIDEAIK-IKEKIGCKIYFVDERLTTSSLYSEVR-GQVSYKKVKRTKDQNS 124 Query: 141 AALILQEVL 149 + LIL + Sbjct: 125 SVLILSNFI 133 >gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 67 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147 +FV +++ ++ + + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ Sbjct: 1 MKVISFV-DLLKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQT 59 Query: 148 VLDRIS 153 LD S Sbjct: 60 YLDGRS 65 >gi|330872144|gb|EGH06293.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 66 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ID GTK+IG+A+ A L + ++ + I A ++GLPLN Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66 >gi|224032587|gb|ACN35369.1| unknown [Zea mays] Length = 146 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 4/107 (3%) Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFV 107 + A + + ++ +IA F++G P + G + + + +P+ Sbjct: 30 TNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQV-SLAGELCKTGKLDDLPYA 88 Query: 108 FWDERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153 +WDE T+ + +L +N+ D AA ILQ LD ++ Sbjct: 89 YWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135 >gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday junction resolvase in mycoplasmas and B. subtilis) [uncultured gamma proteobacterium HF0010_11B23] Length = 128 Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 15/139 (10%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 K + + S+D GTK IG+ I++ P P + + EL + + +I Sbjct: 3 KEAKVVLSLDYGTKNIGICIAETYTGQTKPLPVI--ENNDSFYTELDNLLKEWRPNIVLI 60 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G+P M+ ++ +A++ N + + +E TT + + K+ Sbjct: 61 GIPPKMSSDFNDGLNEAKAYIINEHK----IKVIEVNEDFTT---------QGLDKCKKN 107 Query: 134 QKVDSIAAALILQEVLDRI 152 DS +A LI Q+ + I Sbjct: 108 HMKDSYSAELIFQDWFNDI 126 >gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str. Miyayama] gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 159 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 13/152 (8%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60 M ++ + +++ + SID G + +G+A+SDP R+ A ++ Sbjct: 1 MITFDLQKFLGAIEAG-RVISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIM 59 Query: 61 SFITTENIAAFIIGLP---LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 ++ + I+G P + NG + F + + P + DE +T Sbjct: 60 KVVSDFS--GIIVGTPFSHIRNNG----WLDFIDKFAQKLSE-VTRKPILMCDESSSTSD 112 Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 +L ++SR ++ + D IAA IL++ L Sbjct: 113 VMILL--SSLSRSRQKEWKDKIAACCILEKTL 142 >gi|307297757|ref|ZP_07577563.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF [Thermotogales bacterium mesG1.Ag.4.2] gi|306917017|gb|EFN47399.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF [Thermotogales bacterium mesG1.Ag.4.2] Length = 132 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 9/129 (6%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 ID GT RIGLA+ P + + LL I + I +IGLP++M Sbjct: 4 LGIDFGTSRIGLALQVENIEI--PLFAIDHTGYKKN---LLRIIEEKGIEEIVIGLPISM 58 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 +G +F + DE LTT +A+++ + K Sbjct: 59 SGRFSESTLKAVSFAEK-VKSIFPGRVFLVDETLTTETARRLSSEAGQDFSKARDV---F 114 Query: 140 AAALILQEV 148 +A IL+ Sbjct: 115 SAIQILRNY 123 >gi|145354506|ref|XP_001421524.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581761|gb|ABO99817.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 202 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 34/171 (19%) Query: 7 EDLVKSLKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLS 61 ++L + + + +D G +R+GLA+S+ G P L T T +L Sbjct: 25 DELRAARRARGDVIALGVDYGARRVGLAVSN-GGAAPRPLRTLTHSGTATTTSTVRAILD 83 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTR--------------AFVHNMID-------- 99 E ++G+P+ G R F + D Sbjct: 84 VALEECCDRIVVGIPVP----PGRAAKDRRGRGRGAVQMHAVCARFAGEVADACARSTNA 139 Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + +DE T+ A + + S + +DS +AA++L+ D Sbjct: 140 ETKALVVYTYDESRTSKEASERIATSGGSNEN--GALDSASAAILLERYFD 188 >gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division TM7 single-cell isolate TM7a] Length = 75 Score = 70.7 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152 + + F DER TT A+ L + + K+R + VD +AA++ILQ+ LD + Sbjct: 18 LKKNIPNIQIFFVDERYTTTEAEHYLKNYSKKNGKERRKVVDMVAASIILQKYLDTL 74 >gi|308812223|ref|XP_003083419.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri] gi|116055299|emb|CAL57695.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri] Length = 224 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 27/152 (17%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGLP 76 +D G +RIGLA+SD P + + +A E+ E ++G+P Sbjct: 66 LGVDYGARRIGLAVSD-SGMAPRPLRTMEHRGSATTGASAREVAETAARECCDRIVVGVP 124 Query: 77 LNM----NGSEGPRVHSTR------AFVHNMIDRKV--------YVPFVFWDERLTTVSA 118 G + R F + D V DE T+V A Sbjct: 125 KQPGRGMKDRRGRGRGAVRMDLICARFAGEVADALARSEDANARAVTVYTLDESRTSVEA 184 Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 + + + VD+ +AA++L+ D Sbjct: 185 AERMEASGST-----NSVDAASAAILLERYFD 211 >gi|302847257|ref|XP_002955163.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f. nagariensis] gi|300259455|gb|EFJ43682.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f. nagariensis] Length = 215 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 63/146 (43%), Gaps = 17/146 (11%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGL 75 + +D GT GLA+ G P + K++ A ++L+ + + ++G+ Sbjct: 40 VLGVDYGTSITGLALGRNGWC--SPLKSIPSLRTSKLSDVARQVLATALEQRVEGMVVGI 97 Query: 76 PLNMNG------SEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQIL---ID 124 P+ G ++ R H + ++ +P ++E+ TT + + L Sbjct: 98 PVQPGGSIVKPHTDSRLGSRCRNLAHTLALMAKEHGIPVYLYNEKDTTRATMKTLGYNWT 157 Query: 125 MNVSRKKRIQ-KVDSIAAALILQEVL 149 +S +++ K+DS +AA++L+ Sbjct: 158 DRLSGQEKQACKLDSESAAMLLRLYF 183 >gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B] gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B] Length = 202 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 24/126 (19%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I +ID G + G AI + + K +++ I+ N ++G+PL+ Sbjct: 2 IIAIDYGNSKCGYAIGN----------NFISKSGAVKTKDIMKLIS--NAKKIVMGIPLS 49 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 M+G+ + F +N++++ DERLTT A I + D+ Sbjct: 50 MSGNYSTQSLKVLTFANNLVEKGYD--VFLIDERLTTKMASSFGIKDD----------DA 97 Query: 139 IAAALI 144 +A I Sbjct: 98 FSARQI 103 >gi|213617507|ref|ZP_03372333.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 47 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 FWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151 DERL+TV A+ L + R KVDS +A +IL+ ++ Sbjct: 2 LHDERLSTVEARSGLFERGGYRALNKGKVDSASAVIILESYFEQ 45 >gi|154249032|ref|YP_001409857.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1] gi|154152968|gb|ABS60200.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1] Length = 226 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 27/136 (19%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I +ID G + G AI + F + ++ I +G+PL Sbjct: 2 SIIAIDYGKSKCGYAIGN---VFVSESGTIKTSEIHTKISSFKKII---------LGIPL 49 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 +M+G+ + F ++ + +F DERLTT A + + + D Sbjct: 50 SMSGNYSTQTFEVIKFGIKLLKQ--GKEVLFIDERLTTQMA----------KTYQKKDDD 97 Query: 138 SIAAALILQEVLDRIS 153 +A +L LD I+ Sbjct: 98 RFSAEQLL---LDYIN 110 >gi|255626817|gb|ACU13753.1| unknown [Glycine max] Length = 110 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Query: 56 ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERL 113 A +L S I ++ F+IG+P + + + F+ N+ K+ V + +W+E Sbjct: 2 ASDLESLIAKYSLKGFVIGIPFDKH-QVSSDAMQVKVFIDNLCRTKMLEGVKYAYWNESF 60 Query: 114 TTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153 T+ + + +L +N++ +D AA ILQ LD ++ Sbjct: 61 TSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101 >gi|289758683|ref|ZP_06518061.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289714247|gb|EFD78259.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length = 107 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 ID+G RIG+A SDP A P + R + + L + I+ Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78 Query: 74 GLPLNM 79 GLP + Sbjct: 79 GLPRTL 84 >gi|320335781|ref|YP_004172492.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211] gi|319757070|gb|ADV68827.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211] Length = 131 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 14/131 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+ RIG A+ A R R ++ + E ++GLPL Sbjct: 6 VLALDVSKTRIGYAV--NVGDLAFGRGSRDRTTLSADLKAVAKKAHHEGATLLLLGLPLR 63 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 +G+ R+F + R + DER TT A + L ++ D Sbjct: 64 TDGAPSAVADRVRSFGSAL--RAAGHTVQYQDERFTTQRA-RDLGAADL---------DE 111 Query: 139 IAAALILQEVL 149 AA IL+ L Sbjct: 112 AAAVQILELYL 122 >gi|291533811|emb|CBL06924.1| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Megamonas hypermegale ART12/1] Length = 62 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 I S+D+G + +G+A+SD A + RK + Sbjct: 2 RIMSLDIGDRTVGIAVSDELLFTAQGVETIRRKSYKHDLARIRELSKQYE 51 >gi|226355270|ref|YP_002785010.1| Holliday junction resolvase [Deinococcus deserti VCD115] gi|226317260|gb|ACO45256.1| putative Holliday junction resolvase [Deinococcus deserti VCD115] Length = 139 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+ RIG A+ + A R + RK++ + + ++GLPL Sbjct: 14 VLALDVSKSRIGFAV--NLGQLAFGRGSVDRKRLPLDLKAVRLKVEETGATLLLLGLPLR 71 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 +G+ P RAF + D+ + DER TT A+++ Sbjct: 72 TDGAPSPTADRVRAFGRVLTDKGYR--VAYQDERFTTRRAREL 112 >gi|332295431|ref|YP_004437354.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium narugense DSM 14796] gi|332178534|gb|AEE14223.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium narugense DSM 14796] Length = 134 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 23/141 (16%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G+ +IG AI D + ++ + L FI I ++G Sbjct: 2 ILGIDAGSYKIGYAILDERYNI-FSKGIILLNDFKKDFLR---FIKEYEIEVVVVG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI--- 133 +G+ + + + + + ER T+V A+ I+ Sbjct: 54 -SGTGH---KKVMKLIDEL---NLDLKVIVISERNTSVEAKWRYINSLKGFKGFFCKLFG 106 Query: 134 ---QKVDSIAAALILQEVLDR 151 + VD I+A +I + L+ Sbjct: 107 YLDKPVDDISAVIIAERYLNE 127 >gi|213622573|ref|ZP_03375356.1| Holliday junction resolvase-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 40 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 PLNM+G+E P R F N I + V DERL+TV Sbjct: 1 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTV 40 >gi|227498580|ref|ZP_03928724.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904036|gb|EEH89954.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 133 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 25/144 (17%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I ID G + G A+ + + L+ + + + L + + ++G Sbjct: 1 MKKILGIDPGKDKTGAALCEESGKILR-CEVLLMEHFLASLQKFLDHV---PVTECVLG- 55 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133 NG+ + T ++ + DE +T A+Q+ ++ + Sbjct: 56 ----NGTTSASMQKT------LLAAYPDLAIHIIDEAHSTEEARQLYWKLHPPKGLMKLI 105 Query: 134 --------QKVDSIAAALILQEVL 149 +D +AA +++Q L Sbjct: 106 PLGMRTPPGNMDGLAAVILVQRYL 129 >gi|126660442|ref|ZP_01731551.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110] gi|126618255|gb|EAZ89015.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110] Length = 139 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 26/146 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + D G + G+AI+D + + + +Q L I +I ++G Sbjct: 9 LLGFDPGRDKCGVAIADKLGNI-YYHEVI---ESSQAISTLNHLIEQFSIKFLVMG---- 60 Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDM----NVSRKKRI 133 N + + + + + V VP F DER +T+ A+ +M + R Sbjct: 61 -NQTTS------KQWKKQLENELLVSVPIFFIDERNSTLEARDRYWEMYPPQGLMRLVPK 113 Query: 134 QK------VDSIAAALILQEVLDRIS 153 +D I A L+++ + I Sbjct: 114 GMRNPPRPIDDIVAILLIERYFNSIK 139 >gi|165924192|ref|ZP_02220024.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA 334] gi|165916368|gb|EDR34972.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA 334] Length = 60 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 PNQ + D G KRIG+A+ A+ L + ++ I T + Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVL 60 >gi|325846601|ref|ZP_08169516.1| Holliday junction resolvase-like domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481359|gb|EGC84400.1| Holliday junction resolvase-like domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 38 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV 52 I +DLG K IG+A+SDP A + RKK+ Sbjct: 1 MSRIMGLDLGDKTIGVALSDPFFITAQAYLTIKRKKL 37 >gi|172035379|ref|YP_001801880.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142] gi|171696833|gb|ACB49814.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142] Length = 139 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 24/150 (16%) Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 K + + D G + G+AI+D + + + + +Q L + I +I ++ Sbjct: 4 KSSSMVLGFDPGRDKCGVAIADNKGKI-YYHEVV---ESSQGISTLNNLIEQFSINFLVM 59 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----NVSR 129 G N + + + V VP V DER +T+ A+ +M + R Sbjct: 60 G-----NQTTSKQWKKQLE-----SELLVSVPIVLIDERNSTLEARDRYWEMYPPQGLMR 109 Query: 130 KKRIQK------VDSIAAALILQEVLDRIS 153 +D I A L+++ + I Sbjct: 110 LLPKGMRNPPRPIDDIVAILLIERYFNSIK 139 >gi|145516242|ref|XP_001444015.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124411415|emb|CAK76618.1| unnamed protein product [Paramecium tetraurelia] Length = 139 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 12/137 (8%) Query: 19 IASIDLGTKRIGLAIS-DPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75 + IDLGT G ++S + + + + + L ++ I E I +IG Sbjct: 12 LMGIDLGTAFTGFSVSYNLQQVLVYDLHYSPCYSPHDSTLYKRIIQIINKEKIGGILIGK 71 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 P +G T+ N++ + E TT A++I S+ Sbjct: 72 PSF---EKGYIEEFTKGLESNLVAEGLKTFITQVGEDYTTKQAKKI------SKTNNKFL 122 Query: 136 VDSIAAALILQEVLDRI 152 D +AA LILQ L+ + Sbjct: 123 HDGMAAMLILQSFLNEL 139 >gi|332712311|ref|ZP_08432239.1| putative endonuclease involved in recombination [Lyngbya majuscula 3L] gi|332349117|gb|EGJ28729.1| putative endonuclease involved in recombination [Lyngbya majuscula 3L] Length = 133 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 30/144 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + G+A+ + + + + I ++G Sbjct: 2 ILGFDPGRDKCGVAVMEKDGQLLT-HEVVA---SGNAIAKFQQLCQQFPIETIVMG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ------------QILIDM 125 + + + + + + VP V DER +++ A+ Q LI Sbjct: 54 ------DQT-TAKRWKQKIKEELPASVPIVLVDERYSSLEARPRYWQMYPPKGFQRLIPQ 106 Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149 + + R +D I A L+++ + Sbjct: 107 GMRQPPR--PIDDIVAILLIERYI 128 >gi|67925371|ref|ZP_00518722.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH 8501] gi|67852786|gb|EAM48194.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH 8501] Length = 140 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 30/150 (20%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 I D G + G+AI+D + + + +Q L + + I ++ ++G Sbjct: 7 SKILGFDPGRDKCGIAITDKKGNI-YYHQVI---ESSQAILTINTLIKQFSVNLLVLG-- 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQ------------ILI 123 N + + + + + + +P DER +T+ A+ L+ Sbjct: 61 ---NQTTS------KQWRKRLDNELLMSIPIELIDERNSTLEARDRYWKMYPPQGLMRLL 111 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + R +D I A L+++ I+ Sbjct: 112 PQGMRNPPR--PIDDIVAILLIERYFKSIN 139 >gi|159027740|emb|CAO89610.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 130 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 30/143 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + G+A+ + + +Q L S I ++G Sbjct: 3 ILGFDPGKDKCGIAVRSSTGKIYT-HEVIA---SSQAIEHLASLCQQYPIELLVMG---- 54 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126 N + I +V +P DER +T+ A+ Q LI Sbjct: 55 -NQTTSKSW-------REKIAARVTIPITLVDERNSTLEARDRYWQMFPPKGLQKLIPQG 106 Query: 127 VSRKKRIQKVDSIAAALILQEVL 149 + R +D I A L+++ L Sbjct: 107 MRLPDR--PIDDIVAILLIERHL 127 >gi|282899412|ref|ZP_06307379.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis raciborskii CS-505] gi|281195676|gb|EFA70606.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis raciborskii CS-505] Length = 158 Score = 52.6 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 26/151 (17%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +K I D G + G+A+ + H + K Q + F TT +I+ + Sbjct: 8 IKTQSTILGFDPGRDKCGVAVMGIDLKLYH-HEVVPAK---QVITRISDFRTTFSISRIV 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSR-- 129 +G + + + + + + DER TT++A+ M R Sbjct: 64 MG-----------NQTTAKTWQQQLEQELNPSLDIILVDERYTTLAARDRYWQMFPPRGL 112 Query: 130 --------KKRIQKVDSIAAALILQEVLDRI 152 ++ + +D I A L+++ L+ + Sbjct: 113 TSLVPKGLRQPPRVIDDIVAILLIERYLEEL 143 >gi|258645767|ref|ZP_05733236.1| conserved hypothetical protein [Dialister invisus DSM 15470] gi|260403138|gb|EEW96685.1| conserved hypothetical protein [Dialister invisus DSM 15470] Length = 144 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 11/101 (10%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G+ + G+A+ A + + + + E+ + +I ++G Sbjct: 2 ILALDPGSVKTGVAVVHKDGSLAW-KKVIQTEDFEK---EVQGVLDAYDIGVIVMG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 NG+ + + V + +R+ V DE+ TT + Sbjct: 54 -NGTHHKEMQ--QRTVMLLKEREKNVKIELVDEKYTTEMGE 91 >gi|282897295|ref|ZP_06305297.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii D9] gi|281197947|gb|EFA72841.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii D9] Length = 150 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 26/150 (17%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 +K I D G + G+A+ R+ H + K Q + F TT +I+ + Sbjct: 8 IKTQSTILGFDPGRDKCGVAVMGIDRKLYH-HEVVPAK---QVITRISDFRTTFSISTIV 63 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSR-- 129 +G + + + + + + DER TT++A+ M R Sbjct: 64 MG-----------NQTTAKTWKQQLEQELNPSLDIILVDERYTTLAARDRYWQMFPPRGL 112 Query: 130 --------KKRIQKVDSIAAALILQEVLDR 151 ++ + +D I A L+++ L+ Sbjct: 113 TNLVPKGLRQPPRVIDDIVAILLIERYLEE 142 >gi|166363434|ref|YP_001655707.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843] gi|166085807|dbj|BAG00515.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843] Length = 130 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + G+A+ + + +Q L S + ++G Sbjct: 3 ILGFDPGKDKCGIAVRSSTGKIYT-HEVIA---SSQAIERLASLCQQYPLELLVMG---- 54 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126 N + A ++ +P DER +T+ A+ Q LI Sbjct: 55 -NQTTSKSWRQKIA-------ARITIPITLVDERNSTLEARDRYWQMFPPKGLQKLIPQG 106 Query: 127 VSRKKRIQKVDSIAAALILQEVL 149 + R +D I A L+++ L Sbjct: 107 MRLPDR--PIDDIVAILLIERHL 127 >gi|17231886|ref|NP_488434.1| hypothetical protein alr4394 [Nostoc sp. PCC 7120] gi|17133530|dbj|BAB76093.1| alr4394 [Nostoc sp. PCC 7120] Length = 148 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 27/155 (17%) Query: 10 VKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68 + + P QP I D G + GLA+ R+ + + + A+ +++ + + Sbjct: 3 LSAFSPTQPVILGFDPGKDKCGLAVMGLDRQL-----YYHQVVASADAIAIINTLRQQFP 57 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNV 127 + ++ M + + + + V DER +T+ A+ M Sbjct: 58 ISMLV-----MGNQTT-----AKRWKQQLQQELAEALNIVLVDERYSTLEARDRYWQMYP 107 Query: 128 SRKKRI----------QKVDSIAAALILQEVLDRI 152 + + +D I A L+++ L+R+ Sbjct: 108 PKGLTKLLPHGMRQPPRPIDDIVAILLIERYLNRL 142 >gi|119513399|ref|ZP_01632431.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414] gi|119461949|gb|EAW42954.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414] Length = 147 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 35/163 (21%) Query: 4 LLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 + + P QP I D G + GLA+ R+ + + +K T L Sbjct: 1 MTFSEF----SPTQPVILGFDPGKDKCGLAVMGLDRQL-YYHQVVTAQKAIATIETLRQ- 54 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQI 121 ++ ++G N + + + + + V + + DER +T+ A+ Sbjct: 55 --QFPVSLLVMG-----NQTTS------KQWKQQLREALVEQLSIILVDERYSTLEARDR 101 Query: 122 ------------LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 L+ + + R +D I A L+++ L+R+ Sbjct: 102 YWQMYPPKGLTKLLPQGMRQPPR--PIDDIVALLLIERYLNRL 142 >gi|255082690|ref|XP_002504331.1| predicted protein [Micromonas sp. RCC299] gi|226519599|gb|ACO65589.1| predicted protein [Micromonas sp. RCC299] Length = 405 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 6 IEDLVKSLKPNQPI---ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 ++D KSL+ + + +D GT+R G+A+S G P + + ++ Sbjct: 82 LDDEFKSLRAARGVVTALGVDYGTRRAGIAVS-VGGASPRPVAVVPATPPGELIDAVVRA 140 Query: 63 ITTENIAAFIIGLPL 77 E ++GLP Sbjct: 141 AVRERADVIVVGLPK 155 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 26/103 (25%) Query: 71 FIIGLPLN----MNGSEGPRVHS-------TRAFVHNMIDR-------KVYVPFVFWDER 112 +G P N +GS R + R F N+ D V DE Sbjct: 286 VAVGSPPNRRTEDDGSTNRRGRAPVKMHVLARRFAENLADAVRDAGLGAKGTRVVMVDES 345 Query: 113 LTTVSAQQILIDM------NVSRKKRIQKVDSIAAALILQEVL 149 T+ A+ LI + + R +D IAA ++L Sbjct: 346 ATS--AEADLIASTARGGRGLKDRPRGAHLDDIAAGVLLDRYF 386 >gi|220909831|ref|YP_002485142.1| Resolvase RNase H domain-containing protein fold protein [Cyanothece sp. PCC 7425] gi|219866442|gb|ACL46781.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC 7425] Length = 137 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 30/149 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G ++ G+A+ R H + + S T I+ ++G Sbjct: 2 ILGFDPGRQKCGIAVMGLDRSI-HYHQVV---SSEAAIATIESLRQTYPISLLVMG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQ------------ILIDM 125 + + + + + + + DER +T++A+ LI Sbjct: 54 ------DQT-TAKQWKQKLSQSLPQPLTIISVDERYSTLTARDRYWQMYPPRGLYRLIPK 106 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154 + R VD I A ++++ L+R+++ Sbjct: 107 GMRGTPR--PVDDIVAIVLIERYLERLTY 133 >gi|218246877|ref|YP_002372248.1| Resolvase RNase H domain-containing protein fold protein [Cyanothece sp. PCC 8801] gi|257059919|ref|YP_003137807.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802] gi|218167355|gb|ACK66092.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC 8801] gi|256590085|gb|ACV00972.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802] Length = 140 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 26/151 (17%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 ++KP + I D G + GLA+ D + H L S I Sbjct: 2 NIKPPEIILGFDPGRDKCGLAVRDQKDQILYHEV-----VSSEAAIATLKSVSQQYPIDL 56 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----N 126 ++G N + + + P V DER +++ A+ M Sbjct: 57 LVMG-----NQTTSKQWKKQLE-----SELSPTFPIVMVDERNSSLEARDRYWQMYPPQG 106 Query: 127 VSRKKRIQK------VDSIAAALILQEVLDR 151 ++R +D I A L+++ L+ Sbjct: 107 LTRLIPQGMRLPPCPIDDIVAILLIERYLNN 137 >gi|119484735|ref|ZP_01619217.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106] gi|119457553|gb|EAW38677.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106] Length = 136 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 30/146 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + G+A+ + + + T+ L S I ++G Sbjct: 5 ILGFDPGKDKCGIAVMENNNQL-QYHQVIP---STEAIKTLQSLCQQFPIHLCVMG---- 56 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ------------ILIDM 125 N + +++ + + + + DER +++ A+ LI Sbjct: 57 -NQTTS------KSWKQKLSEALPNTLQIILVDERYSSLEARDRYWQMYPPQGLTRLIPQ 109 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151 + R +D + A ++++ L + Sbjct: 110 GMRTPPR--PIDDLVAIILIERYLSQ 133 >gi|224032053|gb|ACN35102.1| unknown [Zea mays] Length = 167 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPR 44 M +L E+L + + + +D+G+K +G+AISD R A P Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPL 50 >gi|238927584|ref|ZP_04659344.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531] gi|238884509|gb|EEQ48147.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531] Length = 132 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 28/144 (19%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + I +ID G ++ G+A+ A L T ++ + I+G Sbjct: 2 SGNILAIDPGREKCGVAV-----LAADGTVLLQEVIPTARLADVTGALLERYAPTVIMG- 55 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 NG+ + V + DE TT +A+ + R R Sbjct: 56 ----NGTTSAAAKAC---VEELGH-----EVNLVDEYRTTDAAKCAYWAAHPPRGWRRFV 103 Query: 136 ----------VDSIAAALILQEVL 149 VD A ++ Q L Sbjct: 104 PRGMLVPPVPVDDFVAVILAQRYL 127 >gi|218437377|ref|YP_002375706.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC 7424] gi|218170105|gb|ACK68838.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC 7424] Length = 132 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 34/150 (22%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL---SFITTENIAAFIIGL 75 I D G + G+A+ R+ + +V ++ + + + I ++G Sbjct: 2 ILGFDPGRDKCGVAVMGNDRQ-------IYDHQVVESDRAIAVVNALLKEYPIEILVMG- 53 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI------------LI 123 + I+ +P V DER +++ A+ LI Sbjct: 54 --------NQTTAKSWK-AKLEIELSQSIPIVLVDERNSSMEARDRYWEMYPPKGIKWLI 104 Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153 + R +D I A L+++ L ++S Sbjct: 105 PQGMRLPPR--PIDDIVAILLIERYLGQLS 132 >gi|298490371|ref|YP_003720548.1| resolvase RNase H domain-containing protein fold protein ['Nostoc azollae' 0708] gi|298232289|gb|ADI63425.1| Resolvase RNase H domain protein fold protein ['Nostoc azollae' 0708] Length = 145 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 26/146 (17%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I D G + G+A+ R+ + + A+ + + + I+ Sbjct: 7 AILGFDPGRDKCGVAVMGVDRQL-----YDHQVVAGNDAIAHIEILRRKFPIFLIV---- 57 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM----NVSRKKR 132 G + + + + + + + DER TT+ A++ M +++ Sbjct: 58 -----MGDQT-TAKKWKQQLNQELTDMLNIILIDERYTTLEARERYWQMFPPTGLTKLLP 111 Query: 133 IQK------VDSIAAALILQEVLDRI 152 +D I A L+++ L+R+ Sbjct: 112 KGMRQPPRPIDDIVAILLIERYLNRL 137 >gi|16331716|ref|NP_442444.1| hypothetical protein sll0832 [Synechocystis sp. PCC 6803] gi|1001270|dbj|BAA10514.1| sll0832 [Synechocystis sp. PCC 6803] Length = 151 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 34/146 (23%) Query: 20 ASIDLGTKRIGLAI--SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 D G + G+A+ D + + ++V Q L + + ++G Sbjct: 19 LGFDPGRDKCGVAVMTGDRQILY---HETIAAQEVPQ---RLPALCEQYQVEQVVMG--- 69 Query: 78 NMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQ------------ILID 124 + + + + + +E+ +TV A+Q L+ Sbjct: 70 --------NQTTAKQWQKQLQSYLLPAMALALVNEKNSTVEARQRYWQMYPPQGLGRLVP 121 Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150 + + R VD I A L+++ LD Sbjct: 122 LGLRTPPR--PVDDIVAILLIERYLD 145 >gi|303288922|ref|XP_003063749.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454817|gb|EEH52122.1| predicted protein [Micromonas pusilla CCMP1545] Length = 296 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G +R GLA+S P + + ++ E I+GLP Sbjct: 80 LGVDYGRRRTGLAVS-STGASPIPLAVIPSVPPHELVRAVVDAARRERATEIIVGLPTQP 138 Query: 80 NGSE 83 SE Sbjct: 139 AASE 142 >gi|220932583|ref|YP_002509491.1| Resolvase RNase H domain protein fold protein [Halothermothrix orenii H 168] gi|219993893|gb|ACL70496.1| Resolvase RNase H domain protein fold protein [Halothermothrix orenii H 168] Length = 131 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 16/111 (14%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + +ID G + G+A+ D + + + L ++ ++G Sbjct: 2 VLAIDPGRDKCGIAVVDRNLKI----FYRAIVSPGKLGSYLQKLSHRYSLEGIVLG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 NG+ V I+ V +P DE TT+ A++ + + Sbjct: 54 -NGTFSGEVKKI-------IEATVNIPVHEVDESYTTLEAEERYRQEHYTG 96 >gi|284049003|ref|YP_003399342.1| Resolvase RNase H domain protein fold protein [Acidaminococcus fermentans DSM 20731] gi|283953224|gb|ADB48027.1| Resolvase RNase H domain protein fold protein [Acidaminococcus fermentans DSM 20731] Length = 138 Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 31/143 (21%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFIIGLP 76 +D G + G A LVR+ + T L +F+ E+ A ++G Sbjct: 8 LGVDPGRDKTGAA-------LVAGDGTLVRQAILPTDHFTDHLRAFLAGESPAGCVLG-- 58 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133 +G+ +H + + +P DE +T A+++ + R + Sbjct: 59 ---DGTTSTTMH------RQLEETFPRLPLFTVDEYGSTQEAKKLYWQLFPPRGWKRFLP 109 Query: 134 -------QKVDSIAAALILQEVL 149 VD +AAA++++ L Sbjct: 110 QALLDAPSAVDGLAAAVLVRRYL 132 >gi|148238653|ref|YP_001224040.1| polynucleotidyl transferase [Synechococcus sp. WH 7803] gi|147847192|emb|CAK22743.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily [Synechococcus sp. WH 7803] Length = 145 Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 35/148 (23%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN----IAAFII 73 IA++D G + GL + D V + A +L+ + + +I Sbjct: 3 RIAALDPGRSKCGLVLVDLDLG-------RVLEGQVAPAESVLATLEQWRGVGPLERMVI 55 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSR 129 G NG+ H +P DER TT++A++ + R Sbjct: 56 G-----NGTAS---------AHWRDQLPADLPLTVVDERGTTLAARRRYWELWPPQGWRR 101 Query: 130 KKRIQK------VDSIAAALILQEVLDR 151 +D++AA +IL+ L+R Sbjct: 102 LLPEGLRIPPCDLDAVAALVILESALNR 129 >gi|254424331|ref|ZP_05038049.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335] gi|196191820|gb|EDX86784.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335] Length = 148 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 25/146 (17%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + D G + G+A+ + H + V+ T L T I++ ++G Sbjct: 15 TLLGFDPGRDKCGVAVVGLDKAL-HYHQVISSPNVSATIQNLR---ETYPISSIVMG--- 67 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSR 129 + ++ + + + V DER +++ A+ +M + R Sbjct: 68 -------DQT-RSKQWKKQLGNLPNAPRIVLIDERYSSLEARDRYWEMYPPKGITKLLPR 119 Query: 130 KKRI--QKVDSIAAALILQEVLDRIS 153 R + +D I A L+++ L+R+S Sbjct: 120 SLRSIPRPIDDIVAILLVERYLNRLS 145 >gi|86605919|ref|YP_474682.1| hypothetical protein CYA_1236 [Synechococcus sp. JA-3-3Ab] gi|86554461|gb|ABC99419.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 138 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 19/106 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRK--KVTQTALELLSFITTENIAAFIIGL 75 + D G + GLA+ P L R+ + L + I+G Sbjct: 2 LMGFDPGRDKCGLAV-----VQVQPAWQVLHREVVSAGEALARLQALWQQFGAERLILG- 55 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 + R + + V DER ++ A++ Sbjct: 56 ----------NQTTARGWKRQLESLLPPQQIVLVDERHSSEEARRR 91 >gi|330839723|ref|YP_004414303.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC 35185] gi|329747487|gb|AEC00844.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC 35185] Length = 139 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 31/148 (20%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFII 73 + +A++D G ++ G A+ D ++ +KV +T LE+ + ++ Sbjct: 4 ETLAAVDPGREKCGFAVLDVHG-------TVLFQKVIETLKLGLEINDKCSRYAFTTLVL 56 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G NG+ + + + V DE TT A++ R Sbjct: 57 G-----NGTTSREAKK------RIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRR 105 Query: 134 ----------QKVDSIAAALILQEVLDR 151 + VD A ++ + L++ Sbjct: 106 LLPVSMLVPPEPVDDFVAVILARRFLEK 133 >gi|304437497|ref|ZP_07397455.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369547|gb|EFM23214.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 132 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 32/150 (21%) Query: 16 NQPIASIDLGTKRIGLAI--SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + + ++D G ++ G+A+ +D + ++T TA+ L+ I+ Sbjct: 2 SGAVLAVDPGREKCGVAVLAADGTVLLQ---EVVPTTQLTATAVRLIHT----YAPTVIM 54 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G NG+ + RA + + DE TT +A+ + R R Sbjct: 55 G-----NGTTS---AAARARIEEL-----GTEVTLVDEYRTTDAAKAAYWTAHPPRGWRR 101 Query: 134 QK----------VDSIAAALILQEVLDRIS 153 VD A ++ Q L +S Sbjct: 102 LMPRGMLVPPVPVDDFVAVILAQRYLTEVS 131 >gi|260886294|ref|ZP_05897557.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185] gi|260864013|gb|EEX78513.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185] Length = 140 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 31/148 (20%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFII 73 + +A++D G ++ G A+ D ++ +KV +T LE+ + ++ Sbjct: 5 ETLAAVDPGREKCGFAVLDVHG-------TVLFQKVIETLKLGLEINDKCSRYAFTTLVL 57 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 G NG+ + + + V DE TT A++ R Sbjct: 58 G-----NGTTSREAKK------RIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRR 106 Query: 134 ----------QKVDSIAAALILQEVLDR 151 + VD A ++ + L++ Sbjct: 107 LLPVSMLVPPEPVDDFVAVILARRFLEK 134 >gi|158337164|ref|YP_001518339.1| hypothetical protein AM1_4040 [Acaryochloris marina MBIC11017] gi|158307405|gb|ABW29022.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 153 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 26/144 (18%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G ++ GLA+ + H +V +Q + + I+ ++G Sbjct: 16 ILGFDPGRQKCGLAVMGIDQTI-HWHQVVVA---SQVIDSINALCEIYPISLLVMG---- 67 Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILID----MNVSR---- 129 N + + ++ + ++ + + V DER +T+ A+ + R Sbjct: 68 -NQTTS------KEWLQVLNEKYALNLDIVQVDERNSTLEARSRYWQIYPPQGIHRFIPQ 120 Query: 130 --KKRIQKVDSIAAALILQEVLDR 151 +K +D I A L+++ L++ Sbjct: 121 SLRKINHPIDDIVAILLIERYLEK 144 >gi|86609221|ref|YP_477983.1| hypothetical protein CYB_1763 [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557763|gb|ABD02720.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 154 Score = 47.2 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 15/113 (13%) Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENI 68 LK + + D G + G+A+ L R+ V A L + Sbjct: 8 ARLKSERVLIGFDPGRDKCGIAVVQV--FTQTELKVLHREVVPSAAALSRLQTLRQQFQA 65 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 I+G + +A+ + V DER ++ A+Q Sbjct: 66 EQVILG-----------NQTTAQAWKSQLESILPPQQIVLVDERHSSQEARQR 107 >gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens] Length = 548 Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75 +P +D G +R G+ + + P + +T A +++ E AF++GL Sbjct: 474 EPTLGVDFGLRRTGVCVG--RGYASRPLEVVENCGNLTAHAAAIVALALREGATAFVVGL 531 Query: 76 PLNMNGSEGPRV 87 PL+ +GSE + Sbjct: 532 PLDRDGSETEQS 543 >gi|113954115|ref|YP_729548.1| hypothetical protein sync_0314 [Synechococcus sp. CC9311] gi|113881466|gb|ABI46424.1| conserved hypothetical protein [Synechococcus sp. CC9311] Length = 150 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 40/153 (26%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE---------NI 68 + ++D G + GL A+ V K + + E+L + I Sbjct: 3 RVVALDPGRSKCGL-------LLANISTNTVLKAMVIPSAEVLDQLRAWMEDDQGENAQI 55 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----D 124 A +IG +G+ + DE TT+ A++ Sbjct: 56 ADLVIG-----DGTSSTIWQQ---------QLPTSLKVHVVDETGTTLRARERYWQLWPA 101 Query: 125 MNVSR------KKRIQKVDSIAAALILQEVLDR 151 R + +D+IAA +IL++ LDR Sbjct: 102 RGWKRLLPLGLRIPSGDLDAIAALVILEDYLDR 134 >gi|186685566|ref|YP_001868762.1| resolvase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186468018|gb|ACC83819.1| Resolvase, RNase H domain protein fold protein [Nostoc punctiforme PCC 73102] Length = 151 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 31/156 (19%) Query: 11 KSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69 + P QP I D G + GLA+ R+ + ++ K+ T L I+ Sbjct: 4 REFSPTQPVILGFDPGRDKCGLAVMGLDRQL-YYHQVVLAKEAIATIETLRQ---KFPIS 59 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQI------- 121 ++G + + + + + + + DER TT+ A+ Sbjct: 60 LMVMG----------DQT-TAKQWREKLYQELTEPLSIILVDERYTTLEARDRYWQMFPP 108 Query: 122 -----LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 L+ + + R +D I A L+++ L+R+ Sbjct: 109 KGLTKLLPQGLRQPPR--PIDDIVAILLIERYLNRL 142 >gi|300867463|ref|ZP_07112117.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300334578|emb|CBN57285.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 132 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK----VTQTALELLSFITTENIAAFIIG 74 I D G + G+A+ VR + S + I ++G Sbjct: 2 ILGFDPGRDKCGIAV--------MGLDREVRYHQVVLAENAIATIESLCSQFPIELIVMG 53 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ------------IL 122 + + R++ + V V DER +++ A+ L Sbjct: 54 -----DQTTS------RSWKQKISASLPLVEVVQVDERYSSLEARDRFWEMFPPKGFNRL 102 Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150 I + R VD I A ++++ L+ Sbjct: 103 IPQGMRTPPR--PVDDIVAIVLIERYLN 128 >gi|254416125|ref|ZP_05029880.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC 7420] gi|196177058|gb|EDX72067.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC 7420] Length = 127 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 30/142 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + GLA+ + + Q + I ++G Sbjct: 2 ILGFDPGRDKCGLAVKGKDQEI-SYHQVIP---SDQAIATIKRLSQQFPIETIVMG---- 53 Query: 79 MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDM 125 N + + R + +P V DER +T+ A+ Q LI Sbjct: 54 -NQTTSKQWQGKIREVIS------APIPIVLVDERYSTLEARDRYWQMYPPKGLQRLIPQ 106 Query: 126 NVSRKKRIQKVDSIAAALILQE 147 + + R +D I A L+++ Sbjct: 107 GMRQPPR--PIDDIVAILLIER 126 >gi|33239731|ref|NP_874673.1| hypothetical protein Pro0279 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237256|gb|AAP99325.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 145 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + + SID G K+ G+ ++D F ++ V + + + I IIG Sbjct: 1 MRKVISIDPGHKKCGILLADVEGLFVIDGKTVINSSVIKL---IEDWREKYIIDLIIIG- 56 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 NG+ R + ID ++ P DER+TT+ A+ ++ Sbjct: 57 ----NGTTS------RYWQGKFIDNEIG-PIELVDERMTTLLARSRYLE 94 >gi|312142812|ref|YP_003994258.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp. 'sapolanicus'] gi|311903463|gb|ADQ13904.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp. 'sapolanicus'] Length = 139 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 44/154 (28%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---------VTQTALELLSFITTENIA 69 + S+D G +IG A+ + R K +T+ L I Sbjct: 5 LLSLDPGRNKIGTAV-------------ISRDKEEREKTIVSLTEFEDHLNEIFDKYQIN 51 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVS 128 I+G NG+ ++ + V DE+ +T AQ + L + +S Sbjct: 52 EIIVG-----NGTGAEKIIKKIEKLKINKKITV------VDEKFSTEEAQARYLREKPMS 100 Query: 129 RKKR----------IQKVDSIAAALILQEVLDRI 152 R ++ + +D AA +I ++ L+++ Sbjct: 101 RYEKLLRKFISWKVKKPLDDYAALIIAEKYLEKL 134 >gi|302392906|ref|YP_003828726.1| Resolvase RNase H domain protein fold protein [Acetohalobium arabaticum DSM 5501] gi|302204983|gb|ADL13661.1| Resolvase RNase H domain protein fold protein [Acetohalobium arabaticum DSM 5501] Length = 127 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 33/144 (22%) Query: 19 IASIDLGTKRIGLAIS-DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ID G + GLA+ D + + I + +IG Sbjct: 2 ILGIDPGRDKCGLALMIDKEEI-----EICEVVATDRILDRIEELIAEYRVNKIVIG--- 53 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133 +G+ ++DR DE +T+ A+++ N R Sbjct: 54 --DGTSSS----------ELLDRLDSDGFEIHQVDETNSTLEARKLYWQSNPPSSWRRLV 101 Query: 134 --------QKVDSIAAALILQEVL 149 + VD A ++++ L Sbjct: 102 PTSFQTPPEAVDGYVAVILIRRYL 125 >gi|139439282|ref|ZP_01772724.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC 25986] gi|133775306|gb|EBA39126.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC 25986] Length = 442 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%) Query: 5 LIEDLVKSLK-PNQPIASIDLGTKRIG--LAISDPGR-RFAHPR--PFLVRKKVTQTALE 58 +E L+ + + ++D G R G +A+ D H P R V T E Sbjct: 28 NLEGLLSARPVRGARVLALDPG-YRTGCKVAVMDETGKLLDHGVVYPTKPRHDVAGTKRE 86 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 L + + + +IG NG+ + ++ + + +E +V + Sbjct: 87 LARLVKKDGVNTIVIG-----NGTASRETEEV--VSEFIAEQAPSLRYTIVNEAGASVYS 139 Query: 119 QQILIDM 125 L Sbjct: 140 ASELASQ 146 >gi|88808007|ref|ZP_01123518.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805] gi|88788046|gb|EAR19202.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805] Length = 145 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 27/143 (18%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 IA++D G + GL + D L V +T + S E + ++G Sbjct: 3 RIAALDPGRSKCGLLLVDTDLGIVLEGHVLEGCSVLETLEQWRS---KEPLDRVVMG--- 56 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135 NG+ ++R + + + DER TT+ A+ ++ + R Sbjct: 57 --NGT------ASRHWRDQL---PADLQLTVVDERGTTLQARSRYWELWPPKGWRRLLPE 105 Query: 136 --------VDSIAAALILQEVLD 150 +D++AA +IL+ L+ Sbjct: 106 GLRIPPCDLDAVAALVILETALN 128 >gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis] gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis] Length = 616 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%) Query: 5 LIEDLVKSLKP-NQPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + N+ + +D G R G+ A+ D + A PF R+ Sbjct: 53 NLRDLLLAAPAGNKAVLGLDPGI-RTGVKAAVIDATGKVLDTATVYPFEPRRDREGAIRT 111 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 L T + IG NG+ T V ++ +P Sbjct: 112 LAGLATRYQVELVAIG-----NGTAS---RETEKLVADLQSAFPRLPLTRV 154 >gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1] gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1] Length = 773 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 22/137 (16%) Query: 5 LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALE 58 ++DL+ S P+ +D G R G +A+ D A P R + Sbjct: 313 NLKDLLLSAPAGMVPVMGLDPGL-RTGVKVAVVDATGQVQTTATIYPHQPRNDWEGSIKA 371 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTV 116 L I + IG NG+ T V + R + V E +V Sbjct: 372 LSLLIKKYKVPLIAIG-----NGTAS---RETDRLVAELNRRHPDLKVTAVVVSEAGASV 423 Query: 117 -----SAQQILIDMNVS 128 A Q L +M+VS Sbjct: 424 YSASAYASQELPEMDVS 440 >gi|87301940|ref|ZP_01084774.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701] gi|87283508|gb|EAQ75463.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701] Length = 154 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 27/147 (18%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 L +A +D G + GL +D GR LV Q L ++ + A I Sbjct: 9 LPSQGALAGLDPGRSKCGLVRTDRGR--QQLLEALVI-PPEQAWGRLEGWLLQGEVQAVI 65 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G NG+ + P + +E +T++A+ ++N +R R Sbjct: 66 LG-----NGTGSASWRR---------RLEPLAPVLLVEEHGSTLAARARFFELNPTRGWR 111 Query: 133 I----------QKVDSIAAALILQEVL 149 + D + A L+L+ +L Sbjct: 112 RLLPQGLRQPPRDWDDVVAQLLLERLL 138 >gi|149183142|ref|ZP_01861591.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1] gi|148849125|gb|EDL63326.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1] Length = 24 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 130 KKRIQKVDSIAAALILQEVLDR 151 KKR + +D +AAA ILQ LD Sbjct: 1 KKRKKVIDKMAAAFILQGYLDS 22 >gi|307154188|ref|YP_003889572.1| Resolvase RNase H domain-containing protein fold protein [Cyanothece sp. PCC 7822] gi|306984416|gb|ADN16297.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC 7822] Length = 132 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 50/143 (34%), Gaps = 24/143 (16%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + G+AI R+ + + + + + I ++G Sbjct: 2 ILGFDPGRDKCGVAIMGNDRQI-YYHEVV---ESDGAISVINTLFQQYPIELLVMG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133 + + + + +P V DER +++ A+ +M + + Sbjct: 54 --NQTTSKTWKAK-LETELAE---SIPIVMVDERNSSLEARDRYWEMYPPKGLQWFIPQG 107 Query: 134 -----QKVDSIAAALILQEVLDR 151 + +D + A L+++ L++ Sbjct: 108 MRLPPRPIDDLVAILLIERYLNK 130 >gi|297185088|gb|ADI21197.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09] Length = 48 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 108 FWDERLTTVSAQQILI---DMNVSRKKRIQKVDSIAAALILQEVL 149 DE ++ A ++LI + + K + + VD+ AA LI + L Sbjct: 1 MIDESYSSKEANEMLILERRLGLRGKIKKEMVDAAAATLIAERWL 45 >gi|242054501|ref|XP_002456396.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor] gi|241928371|gb|EES01516.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor] Length = 51 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPR 44 M +L E+L + + + +D+G+K +G+++SD R A P Sbjct: 1 MRLLQAEELFRKVLEVGSKNKATRLLGLDVGSKYVGVSVSDEKNRIALPL 50 >gi|75909488|ref|YP_323784.1| resolvase, RNase H-like protein fold [Anabaena variabilis ATCC 29413] gi|75703213|gb|ABA22889.1| Resolvase, RNase H-like fold protein [Anabaena variabilis ATCC 29413] Length = 149 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 35/164 (21%) Query: 3 ILLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61 ++ + + P QP I D G + GLA+ R+ + + L Sbjct: 1 MMNLSEF----SPTQPVILGFDPGKDKCGLAVMGLDRQL-YYHQVVAAADAIAIINTLRQ 55 Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ 120 I+ ++G + + + + + V DER +T+ A+ Sbjct: 56 ---QFPISMLVMG-----------NQTTAKRWKQQLQQELAEALNIVLVDERYSTLEARD 101 Query: 121 I------------LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 L+ + + R +D I A L+++ L R+ Sbjct: 102 RYWQMYPPQGLIKLLPHGMRQPPR--PIDDIVAILLIERYLSRL 143 >gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822] gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis] Length = 791 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + + +D G R G +A+ D + A PF R+ T Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L + + IG NG+ + V +M+ R + Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427 >gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I] Length = 791 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + + +D G R G +A+ D + A PF R+ T Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L + + IG NG+ + V +M+ R + Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427 >gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50] gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50] Length = 791 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + + +D G R G +A+ D + A PF R+ T Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L + + IG NG+ + V +M+ R + Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427 >gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I] gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I] gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS] Length = 791 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + + +D G R G +A+ D + A PF R+ T Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L + + IG NG+ + V +M+ R + Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427 >gi|297379556|gb|ADI34443.1| Hypothetical protein HPV225_0354 [Helicobacter pylori v225d] Length = 81 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQKVDSIAAALI 144 F+ + VF +E +++ A + L + K+ + ++DS++A I Sbjct: 13 ARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRI 69 Query: 145 LQEV 148 L+ Sbjct: 70 LERY 73 >gi|284053053|ref|ZP_06383263.1| hypothetical protein AplaP_16418 [Arthrospira platensis str. Paraca] gi|291566867|dbj|BAI89139.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 132 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 28/142 (19%) Query: 19 IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I D G + G+A + D + + S + ++ ++G Sbjct: 3 ILGFDPGRDKCGVAVVGDN-----QQVYYHQVVAANDAIATVESLCSQFSVQLVVMG--- 54 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM----NVSRKKR 132 N + R + M + V DER +++ A+ +M +SR Sbjct: 55 --NQTTS------RTWKQQMRAVLPESIQIVEVDERYSSLQARDRYWEMYPPQGLSRLLP 106 Query: 133 IQK------VDSIAAALILQEV 148 +D I A ++++ Sbjct: 107 QGMRVPPRPIDDIVAIILVERY 128 >gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299] gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299] Length = 702 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 12/87 (13%) Query: 16 NQPIASIDLGTKRIG--LAI-SDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAA 70 NQ I ID G R G +A+ SD G A P ++ +A LL+ I + + Sbjct: 314 NQTILGIDPGF-RTGCKVAVISDDGLFLDSAVIYPTKPKEDFANSAKTLLALIKKHKVNS 372 Query: 71 FIIGLPLNMNGSEG-PRVHSTRAFVHN 96 IG NG+ F+ Sbjct: 373 IAIG-----NGTASNETASFVSNFIKE 394 >gi|313894648|ref|ZP_07828211.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] gi|313440838|gb|EFR59267.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] Length = 175 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 30/140 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+AI P R + K LL+ I + G Sbjct: 7 ILAVDPGNEKTGVAIVTPDGSMV-CRNIISTKTFNDDIERLLT--EYYGIVHIVCG---- 59 Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133 NG+ P + R + DE +T A+++ N R Sbjct: 60 -NGTNHKYLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKF 110 Query: 134 ---------QKVDSIAAALI 144 + VD + A +I Sbjct: 111 LPTSMQFPPEPVDDLTALVI 130 >gi|144575166|gb|AAZ43956.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 705 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 26/150 (17%) Query: 16 NQPIASIDLGTKRIGL---AISDPG--RRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 I +ID G G A+S+ G A P R V+Q ++L I NI Sbjct: 313 GHNILAIDPGYVS-GCKLAALSEKGSVLEIATIYPNEPRSNVSQAKTKVLELIKKHNITI 371 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-SAQQILIDM-- 125 +IG NG+ T F++N+I F E +V SA +I I+ Sbjct: 372 IVIG-----NGTAS---RETEQFINNLIQENNLDNIYFCIVSEAGASVYSASEIAIEEFP 423 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 N+S +KR +A I ++ LD ++ L Sbjct: 424 NLSVEKR-------SAINIGRKFLDPLNEL 446 >gi|71894559|ref|YP_278667.1| hypothetical protein MS53_0548 [Mycoplasma synoviae 53] Length = 698 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 26/150 (17%) Query: 16 NQPIASIDLGTKRIGL---AISDPG--RRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70 I +ID G G A+S+ G A P R V+Q ++L I NI Sbjct: 306 GHNILAIDPGYVS-GCKLAALSEKGSVLEIATIYPNEPRSNVSQAKTKVLELIKKHNITI 364 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-SAQQILIDM-- 125 +IG NG+ T F++N+I F E +V SA +I I+ Sbjct: 365 IVIG-----NGTAS---RETEQFINNLIQENNLDNIYFCIVSEAGASVYSASEIAIEEFP 416 Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155 N+S +KR +A I ++ LD ++ L Sbjct: 417 NLSVEKR-------SAINIGRKFLDPLNEL 439 >gi|56751384|ref|YP_172085.1| hypothetical protein syc1375_c [Synechococcus elongatus PCC 6301] gi|81298940|ref|YP_399148.1| resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942] gi|56686343|dbj|BAD79565.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81167821|gb|ABB56161.1| Resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942] Length = 143 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 28/141 (19%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77 D G + GLA+ A L + + L + ++G Sbjct: 9 IGFDPGRDKCGLAL-----MEAQTGQILEHRILASAEAIAVLAQLFQARSPQLLVLG--- 60 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133 N + + + + P DER +T+ A+ M R R Sbjct: 61 --NQTTSQQWQA------QLSALPSAPPIALVDERNSTLEARDRYWQMYPVRGWRRLLPQ 112 Query: 134 ------QKVDSIAAALILQEV 148 + VD + A L+L+ Sbjct: 113 GLRQPPRPVDDLVAILLLERY 133 >gi|315929041|gb|EFV08280.1| holliday junction resolvase-like domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 63 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142 E + FV + + F DE T+ A L + +K+ K+DS++A Sbjct: 1 EEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSLSAF 54 Query: 143 LILQEVL 149 +++++ Sbjct: 55 IMIKDYF 61 >gi|292669941|ref|ZP_06603367.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648412|gb|EFF66384.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 143 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 30/145 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIG 74 + P+ +ID G ++ G+A+ A + + T + I A ++G Sbjct: 2 SGPVLAIDPGREKCGVAV-----LSAGGAILVRKVVATADLGSCVGGLIAAHEPA-VVMG 55 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 NG+ + + V DE TT A+++ D++ R R Sbjct: 56 -----NGTTSAEAKT--------RVECLGVTVTLADEYRTTDEAKRLYWDVHPPRGWRRF 102 Query: 135 K----------VDSIAAALILQEVL 149 VD A ++ + L Sbjct: 103 VPRGMLVPPVPVDDFVAVILARRFL 127 >gi|113475680|ref|YP_721741.1| resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101] gi|15420712|gb|AAK97425.1|AF382392_1 unknown [Trichodesmium erythraeum IMS101] gi|110166728|gb|ABG51268.1| Resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101] Length = 133 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 30/145 (20%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I D G + G+AI D R+ H + K+T + + +I IIG Sbjct: 2 ILGFDPGRDKCGIAIMDKNRQL-HYNQVVDSAKIT---ITITKLSQQFDINLIIIG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ------------ILIDM 125 + + N+ + +P + DER +++ A+ LI Sbjct: 54 -DQTTSKIWQQ------NLTEIISEKIPIIKIDERYSSLEARDRYWQINPPQGFVRLIPP 106 Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150 + + + +D I A ++++ L+ Sbjct: 107 GM--RIPPKPIDDIVAIILIERYLN 129 >gi|223996479|ref|XP_002287913.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977029|gb|EED95356.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 242 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 19/109 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVT-----------QTALELLSFITT 65 + +D+ +RIG+A+S+ + F+ P ++ + ++ LEL + + Sbjct: 29 VMGLDITRERIGIAVSEHPKHFSEPLALNSILLQDRDSSSNRSKGIAKESLLELEAAVRK 88 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-----PFVFW 109 ++ AF++ PLN G G + + +++D+ V PF W Sbjct: 89 HHVCAFVVNWPLN-EGRMGEQCGKVLQVLDSVMDQSNSVVTRKRPFTLW 136 >gi|320530393|ref|ZP_08031452.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399] gi|320137357|gb|EFW29280.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399] Length = 133 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 28/144 (19%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID G + G+A+ L T +S + E I+G Sbjct: 1 MSTVLAIDPGRDKCGIAV-----LSPQGDILLHEIVPTGALETRVSELAAEYAPRIIMG- 54 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +G+ + I+ +V DE TT +++ N R R Sbjct: 55 ----DGTTSAATKA-------RIEAQVGA-VTLVDEYRTTEEGRRLYWAENPPRGWRRLV 102 Query: 136 ----------VDSIAAALILQEVL 149 VD AA + + L Sbjct: 103 PRGLLTPTVPVDDFAAVALARRFL 126 >gi|294793347|ref|ZP_06758492.1| conserved hypothetical protein [Veillonella sp. 6_1_27] gi|294455778|gb|EFG24143.1| conserved hypothetical protein [Veillonella sp. 6_1_27] Length = 175 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+AI P R + + +L+ I + G Sbjct: 7 ILAVDPGNEKTGVAILSPSGEM-ICRKIISSNTFNKDIERILT--EYYGIVHIVCG---- 59 Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133 NG+ P + R + DE +T A+++ N R Sbjct: 60 -NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRKI 110 Query: 134 ---------QKVDSIAAALI 144 + VD + A +I Sbjct: 111 IPTSMQFPPEPVDDLTALVI 130 >gi|269797615|ref|YP_003311515.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008] gi|269094244|gb|ACZ24235.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008] Length = 175 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+AI P R + + +L+ I + G Sbjct: 7 ILAVDPGNEKTGVAILSPSGEM-ICRKIISSNTFNKDIERILT--EYYGIVHIVCG---- 59 Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133 NG+ P + R + DE +T A+++ N R Sbjct: 60 -NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRKI 110 Query: 134 ---------QKVDSIAAALI 144 + VD + A +I Sbjct: 111 IPTSMQFPPEPVDDLTALVI 130 >gi|52549635|gb|AAU83484.1| conserved hypothetical protein [uncultured archaeon GZfos28G7] Length = 431 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 19/125 (15%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID GT IG+AI D +P K + +++ I + + Sbjct: 13 IVGIDPGT-TIGVAIIDLEG---NPIEVFSSKNYS--CSDVIERIISRGNPLIV-----A 61 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138 + + P I R P DE L+T + L K + + D+ Sbjct: 62 SDVTPTPSTVK-------RISRIFSSPVHELDESLSTEE-KIALTKGEGYEYKNVHERDA 113 Query: 139 IAAAL 143 +AA + Sbjct: 114 LAACV 118 >gi|260881399|ref|ZP_05404313.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544] gi|260848853|gb|EEX68860.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544] Length = 137 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 31/142 (21%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFI 72 + IA++D G ++ G A+ + ++ ++V +TA E+ + A + Sbjct: 3 MERIAALDPGREKCGFAVLREDGK-------VLMQRVIETAQLEQEVRAAREEHGFAVLV 55 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 G NG+ + + + DE TT A++ R R Sbjct: 56 EG-----NGTTSREARA------RLQKALPDLCIEVVDEYRTTDLAKKAYWKAKPPRGWR 104 Query: 133 I----------QKVDSIAAALI 144 + VD A ++ Sbjct: 105 RLLPVTMQVPPEPVDDFVAVIL 126 >gi|313895762|ref|ZP_07829317.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975591|gb|EFR41051.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 133 Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 28/137 (20%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 + +ID G + G+A+ L T +S + E I+G Sbjct: 1 MSTVLAIDPGRDKCGIAV-----LSPQGDVLLHEIVPTAALETRVSELAAEYAPRIIMG- 54 Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 +G+ + I+ + + DE TT +++ N R R Sbjct: 55 ----DGTTSAAAKA-------RIEAQAGA-VILVDEYRTTEEGRRLYWAENPPRGWRRLV 102 Query: 136 ----------VDSIAAA 142 VD AA Sbjct: 103 PRGLLTPAVPVDDFAAV 119 >gi|217076628|ref|YP_002334344.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B] gi|217036481|gb|ACJ75003.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B] Length = 675 Score = 41.1 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ I +ID G K G +A+ D +F A P + + ++ I ++ Sbjct: 299 KDKRILAIDPGNKT-GCKIAVLDENGKFLEKAIIFPTPPHNDIENSEKIVIELIKKFDLN 357 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTV 116 +IG NG+ T+ F+ N I + + V ++F +E +V Sbjct: 358 LIVIG-----NGTAS---RETQKFIVNTIKKFNLDVKYIFANEAGASV 397 >gi|261885965|ref|ZP_06010004.1| Holliday junction resolvase-like protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 58 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150 ++ DE ++ A + +S+ + + DSIAA +IL+ L+ Sbjct: 14 FDSEIIYVDEAYSSCEASE------LSKDSKDGRFDSIAAMVILKRYLN 56 >gi|87125088|ref|ZP_01080935.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917] gi|86167408|gb|EAQ68668.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917] Length = 143 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 37/147 (25%) Query: 18 PIASIDLGTKRIGLAISDPGR-----RFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72 + +ID G + GL + + R P ++ + E I+ + Sbjct: 3 RLLAIDPGRSKCGLVLCELNRHRVIEGLVLPVE--------DVLHQIQRWSDEEPISTVV 54 Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132 +G NG+ + + + +P +ER TT+ A+ + R R Sbjct: 55 LG-----NGTGSA------DWEQRL---RPLLPVELVEERGTTLRARARYWTLRPPRGWR 100 Query: 133 IQK----------VDSIAAALILQEVL 149 +D+ AA ++L++ Sbjct: 101 RLLPEGLRLPPLDLDAFAALVMLEDHF 127 >gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886] gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886] Length = 775 Score = 41.1 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 16/128 (12%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + ID G R G +A+ D + A P + K+ ++A Sbjct: 313 NLKDLLMAAPAGPRCTLGIDPGL-RTGCKVAVVDATGKLLDTATIYPTPPQNKIAESARV 371 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVS 117 +++ I + IG NG+ T AFV M+ + V E +V Sbjct: 372 VMALIKKHKVDLIAIG-----NGTAS---RETDAFVAAMLKDAGEKIQTVMVSEAGASVY 423 Query: 118 AQQILIDM 125 + L Sbjct: 424 SASELAAA 431 >gi|20095000|ref|NP_614847.1| translation initiation factor 2, GTPase [Methanopyrus kandleri AV19] gi|19888260|gb|AAM02777.1| Translation initiation factor 2, GTPase [Methanopyrus kandleri AV19] Length = 744 Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 39/145 (26%), Gaps = 23/145 (15%) Query: 9 LVKSLKPNQPIASIDLGTKRIGLAI------SDPGRRFAHPRPFLVRKKVTQTALELLS- 61 L+ S PI S+D G G+A D R + L Sbjct: 487 LLSSAGAGGPILSVDPGEVNFGIAYIPRRGPCDVTSVKLTGHT---RDAKVEELRRTLKM 543 Query: 62 -FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 E +G NG V + D V DER TT A Sbjct: 544 FLADREEPNLVYVG-----NGPGHDVA------VEALGDVLPEAEIVLVDERETTKEAVY 592 Query: 121 ILIDMNVSRKKRIQKVDS-IAAALI 144 L + + D +AA I Sbjct: 593 RLSSGKLENVRSRDLRDHGVAALAI 617 >gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 720 Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404 >gi|22298193|ref|NP_681440.1| hypothetical protein tlr0651 [Thermosynechococcus elongatus BP-1] gi|22294372|dbj|BAC08202.1| tlr0651 [Thermosynechococcus elongatus BP-1] Length = 143 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 35/153 (22%) Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTEN 67 + ++ + D G + GLA A + + + + + + Sbjct: 1 MMAMGRTKYFLGFDPGQDKCGLA-------LALGQEVVRHEVVASDRAIACVQEWHQAYP 53 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-------- 119 IIG N + R + + V + DER +T+ A+ Sbjct: 54 FEQVIIG-----NQTTSRRWQQ-------QLQAALAVEIIPVDERHSTLEARDRYWQLFP 101 Query: 120 ----QILIDMNVSRKKRIQKVDSIAAALILQEV 148 Q LI + R +D I A ++L+ Sbjct: 102 PRGWQRLIPKGLRVPPR--PIDDIVAIVLLERY 132 >gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124] gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124] Length = 720 Score = 40.7 bits (95), Expect = 0.060, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404 >gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 720 Score = 40.7 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404 >gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987] gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 720 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404 >gi|325116530|emb|CBZ52084.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 711 Score = 40.7 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 91 RAFVHNMIDRKVYVP--FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148 RA N D +P +DE LTT A++ + R R +DS +AA++ + Sbjct: 600 RAKKGNQTDASPALPPAVFLYDESLTTAEARRAQKE----RSSRGDFLDSQSAAVLGRRF 655 Query: 149 LDR 151 LD Sbjct: 656 LDE 658 >gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2] Length = 778 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G+ A+ D + A P RK + Sbjct: 319 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDTTGKLVETATVFPHEPRKDWDGSLHT 377 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS- 117 L + IG NG+ T +++ R + V E +V Sbjct: 378 LAKLCEKHGVNLIAIG-----NGTAS---RETDKLAADLMKRIDGMQRVVVSEAGASVYS 429 Query: 118 ----AQQILIDMNVSRK 130 A Q + D++VS + Sbjct: 430 ASEFASQEMPDVDVSLR 446 >gi|312897530|ref|ZP_07756950.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis F0359] gi|310621382|gb|EFQ04922.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis F0359] Length = 138 Score = 40.7 bits (95), Expect = 0.075, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 31/141 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA----FIIG 74 I +ID G+ + G+A+ ++K LL ++ + ++G Sbjct: 2 ILAIDPGSVKTGVALVHEDGEL--------KEKRIIPTQSLLQYVQECYDSGALKSVVMG 53 Query: 75 LPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 +G+ + ++++ + V F + +E+ TTV +++ + R Sbjct: 54 -----DGTRHESLGNLVKSWIG---EGHDEVSFSYVNEKFTTVEGRKLYWQYTPRKGWRK 105 Query: 134 ----------QKVDSIAAALI 144 + VD A +I Sbjct: 106 FVPTSWQYPPEPVDDFVAWII 126 >gi|309390180|gb|ADO78060.1| resolvase RNase H domain protein fold protein [Halanaerobium praevalens DSM 2228] Length = 145 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 36/150 (24%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74 + ++D G +IG A+ D V++K EL ++ + I+G Sbjct: 5 LLALDPGRDKIGAAVLD--------YQAQVQEKTIVPLTELEDYLEELDCNYQLQEVIVG 56 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-PFVFWDERLTTVSAQ-QILIDMNVS---- 128 NG+ G V ++ + E TT +AQ + L + +S Sbjct: 57 -----NGT-GAAG------VMELLQKNFDFKKINLVVEEFTTEAAQKRYLKEKPMSNYEK 104 Query: 129 --RK----KRIQKVDSIAAALILQEVLDRI 152 RK K + +D AA +I ++ L ++ Sbjct: 105 LLRKFVNWKVSKALDDYAALIIGEKYLKKL 134 >gi|325831217|ref|ZP_08164509.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1] gi|325486818|gb|EGC89265.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1] Length = 717 Score = 40.3 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69 I ++D G R G +A+ D + P R +V +T +L +++ I Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 +IG NG+ + K V + +E +V + L Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417 >gi|148243441|ref|YP_001228598.1| polynucleotidyl transferase [Synechococcus sp. RCC307] gi|147851751|emb|CAK29245.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily [Synechococcus sp. RCC307] Length = 141 Score = 40.3 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 24/139 (17%) Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80 ++D G ++ GL +D A L+ + L + + ++G + Sbjct: 7 ALDPGRQKCGLVRTDASG--AELVDLLIC-SPREAWDWLQHWQHQAPLQGVVLG-----D 58 Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ----QILIDMNVSRKKRIQK- 135 G+ + + + VP V E +T++A+ Q+L R Sbjct: 59 GTASGPWQQA------LAELEPAVPVVLQPEAGSTLAARERYWQLLPARGWQRLLPRGLR 112 Query: 136 -----VDSIAAALILQEVL 149 VD +AA ++L+ L Sbjct: 113 LPPRPVDDLAAMVLLEAHL 131 >gi|257791221|ref|YP_003181827.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243] gi|257475118|gb|ACV55438.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243] Length = 717 Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69 I ++D G R G +A+ D + P R +V +T +L +++ I Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 +IG NG+ + K V + +E +V + L Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417 >gi|317488041|ref|ZP_07946622.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA] gi|316912871|gb|EFV34399.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA] Length = 717 Score = 40.3 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69 I ++D G R G +A+ D + P R +V +T +L +++ I Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 +IG NG+ + K V + +E +V + L Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417 >gi|169836674|ref|ZP_02869862.1| hypothetical protein cdivTM_06152 [candidate division TM7 single-cell isolate TM7a] Length = 43 Score = 40.3 bits (94), Expect = 0.087, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 18 PIASIDLGTKRIGLAISDPGRRF 40 + +D+G KRIG+A++D G + Sbjct: 21 RLLCLDVGEKRIGVAVADLGVKI 43 >gi|323140937|ref|ZP_08075850.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp. YIT 12067] gi|322414675|gb|EFY05481.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp. YIT 12067] Length = 136 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 25/140 (17%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +D G + GLA+ + L A EL F+ + + I+G Sbjct: 5 LGVDPGRSKTGLALVAADGKILS----LHIAMTDNLAAELRQFVGSAKLQGIIMG----- 55 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI------ 133 NG+ +A + + + E +T A+ + N + R Sbjct: 56 NGTNN------KAIGAVLRELYPDLVPELVGEAYSTEEARSLYWQENPPKGWRKLVPLGL 109 Query: 134 ----QKVDSIAAALILQEVL 149 + +D+ AA + ++ L Sbjct: 110 LVPPEPLDAYAAVVQVRRWL 129 >gi|167945469|ref|ZP_02532543.1| hypothetical protein Epers_02645 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 57 Score = 40.3 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 12/25 (48%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAH 42 + D GT++IG+A+ A Sbjct: 2 TLLGFDFGTRKIGVAVGQTVSGTAS 26 >gi|33864100|ref|NP_895660.1| hypothetical protein PMT1833 [Prochlorococcus marinus str. MIT 9313] gi|33635684|emb|CAE22008.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 152 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 27/142 (19%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + ++D G + GL A V + A +L I A + G+ + Sbjct: 12 RLVAVDPGRNKCGL-------VLADTATNAVLEGKVVAAAAVLDLIMHWQNQAPLAGILI 64 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSRKKRI 133 NG+ + N++ + +ER +T+ A+ + N R Sbjct: 65 G-NGTSSE-------YWQNLLRHIAPLHV--VEERGSTLRARHRYWELWPPSNWRRWLPR 114 Query: 134 QKV------DSIAAALILQEVL 149 + D+IAA ++L++ L Sbjct: 115 GMILPPHHLDAIAAMVLLEDHL 136 >gi|210629846|ref|ZP_03296143.1| hypothetical protein COLSTE_00026 [Collinsella stercoris DSM 13279] gi|210160786|gb|EEA91757.1| hypothetical protein COLSTE_00026 [Collinsella stercoris DSM 13279] Length = 271 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 23/129 (17%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 A P + R +T + NIA + P M+G + RV + RA V Sbjct: 123 IALPL-TIARTPAKETLARVEQVAQRLNIAGVLDKYPYQMSGGQQQRVAAARALV----- 176 Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAALILQEVLD 150 + DE L + +A ++L++ ++R+ + + DS AA + Sbjct: 177 --TDPAVILADEPTGALDSKNA-RLLLESLEAMNRQYQATVLMVTHDSFAA-----SYTN 228 Query: 151 RISFLESSK 159 R+ F+ + Sbjct: 229 RVLFIRDGR 237 >gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501] gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501] Length = 718 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 15/108 (13%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALELLSFITTENIA 69 ++ + ID G R G +A+ D A P +KKV++ +L IT N+ Sbjct: 315 RDKRVLGIDPGF-RTGSKVAVVDEIGNLLATAAIYPHPPQKKVSEAKEQLEELITEYNVD 373 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTV 116 IG NG+ T +I ++ + +V +E +V Sbjct: 374 LIAIG-----NGT---ACRETEELAAEIIKESELDLHYVIVNEAGASV 413 >gi|317010615|gb|ADU84362.1| Holliday junction resolvase-like protein [Helicobacter pylori SouthAfrica7] Length = 84 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 9/81 (11%) Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 ++G P N + F+ ++D VF +E +++ A + L + K Sbjct: 2 LVVGKP---NENYADTNIRIEHFI-KLVD--FKGEIVFINEDSSSIEACENLEYLGRKNK 55 Query: 131 K---RIQKVDSIAAALILQEV 148 + + ++DS++A IL+ Sbjct: 56 RLAIKDGRLDSLSACGILERY 76 >gi|168053781|ref|XP_001779313.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669325|gb|EDQ55915.1| predicted protein [Physcomitrella patens subsp. patens] Length = 632 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 17/115 (14%) Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103 L+ ++ AL LL E A + L G E + R F N+ +RK Sbjct: 88 LDVLLTERRVDDALALL-----EEGEALAVRLSKANGGVESVNRDAVRQFEENLSERKSG 142 Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI-----AAALILQEVLDRIS 153 + D A + L + I +D + A L+LQ +R+ Sbjct: 143 LVVYLVD-------AVRQLTFRGSELRHAIAALDKLGDGSRAHTLLLQSHEERLK 190 >gi|282850062|ref|ZP_06259444.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|282580251|gb|EFB85652.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] Length = 175 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 32/141 (22%) Query: 19 IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 I ++D G ++ G+A +S G R + + +L+ I + G Sbjct: 7 ILAVDPGNEKTGIAIVSPSGEMIC--RKIISSNTFNEDIERVLT--EYYGIVHIVCG--- 59 Query: 78 NMNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 NG+ P + R + DE +T A+++ N R Sbjct: 60 --NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRK 109 Query: 134 ----------QKVDSIAAALI 144 + VD + A +I Sbjct: 110 IIPTSMQFPPEPVDDLTALVI 130 >gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 720 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404 >gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239] gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239] Length = 720 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404 >gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101] gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101] Length = 720 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404 >gi|290968959|ref|ZP_06560494.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] gi|290780915|gb|EFD93508.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] Length = 138 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 29/146 (19%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75 I SID G+++ G+A+ LV K + TA L IA ++G Sbjct: 2 IFSIDPGSEKTGIAVIRQDG-------TLVEKHIIPTAALLSVLQDKTQQYTIAHIVMG- 53 Query: 76 PLNMNGSEG-PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133 +G+ P + + +V + F +E+ TTV +++ R R Sbjct: 54 ----DGTNHKPLQVQVEQW---LQSNRVPIDFSLVNEKFTTVEGRRLYFQYTPLRGWRRF 106 Query: 134 ---------QKVDSIAAALILQEVLD 150 + VD A +I + L+ Sbjct: 107 IPRAWQYPPEPVDDFVAWIIGKRYLE 132 >gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13] gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 720 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63 L+++ + + D G R G +AI D +F P + ++ +T L I Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 + +G NG+ A + I + + Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404 >gi|91203240|emb|CAJ72879.1| strongly similar to maltose transport system ATP-binding protein [Candidatus Kuenenia stuttgartiensis] Length = 359 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 10/96 (10%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 A P K + + + I + P ++G E RV RA V N Sbjct: 95 IAFPLRIRKAKDLNENVENTARML---GINNLLQKYPKELSGGEKQRVALARALVRN--- 148 Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 DE L+ + A+ + +K + Q+ Sbjct: 149 ----PQVFLMDEPLSNLDARLRISARGELKKLQKQR 180 >gi|118588274|ref|ZP_01545683.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614] gi|118438980|gb|EAV45612.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614] Length = 846 Score = 39.2 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + +D G R G+ A+ D + A PF R V+ + Sbjct: 357 NLKDLLLAAPAGSRTTLGLDPGI-RTGVKVAVVDATGKLVDTATIYPFQPRNDVSGSRAA 415 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 LL+ I + IG NG+ Sbjct: 416 LLALIAKHKVGLIAIG-----NGTASRETDK 441 >gi|170078280|ref|YP_001734918.1| hypothetical protein SYNPCC7002_A1673 [Synechococcus sp. PCC 7002] gi|13924476|gb|AAK49024.1| hypothetical protein [Synechococcus sp. PCC 7002] gi|169885949|gb|ACA99662.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 133 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 30/144 (20%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 D G + GLA D + + + + A E + ++ ++G Sbjct: 5 LGFDPGRDKCGLAALDDQGQLLN-HGVIAADQAPNIAKE---WCQRYGVSLVVMG----- 55 Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ------------QILIDMN 126 + + + + + F +ER +T+ A+ Q L+ Sbjct: 56 ------NQTTAKEWHQKLTAVLPPDMAIAFVNERNSTLEARDRYWQMYPPNLFQRLLPQG 109 Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150 + R +D I A L+++ L+ Sbjct: 110 MRLPPR--PIDDIVAILLVERYLN 131 >gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7] gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7] Length = 804 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 17/112 (15%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL---AISDPGRR---FAHPRPFLVRKKVTQTAL 57 ++DL+ + + + +D G R G+ AI D + + PF R+ + Sbjct: 345 NLKDLLLAAPAGPKTVLGLDPGI-RTGVKVAAI-DATGKVLATSTVYPFEPRRDREGSIN 402 Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 L + IT I IG NG+ T V +M ++ + Sbjct: 403 TLAALITKHKIELVAIG-----NGTAS---RETEKLVTDMQEKFPDLKLTRV 446 >gi|319408675|emb|CBI82330.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 156 Score = 38.8 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 +Q I +DLGTK G AIS A ++ + L F Sbjct: 5 SQTILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50 >gi|305664326|ref|YP_003860614.1| hypothetical protein Igag_1941 [Ignisphaera aggregans DSM 17230] gi|304378895|gb|ADM28734.1| hypothetical protein Igag_1941 [Ignisphaera aggregans DSM 17230] Length = 220 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 33/135 (24%) Query: 19 IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTE----NIAAF 71 I ID G IG+AI SD + K + LE+L +I Sbjct: 102 IVGIDFGD-SIGIAIFVNSD--------IVLVNSYKSKEKVLEILKMFIEYSDSIDIKTI 152 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTVSAQQILIDMNVSR 129 IGLP ++ AFV +I P F E ++ Q+ ID Sbjct: 153 RIGLPRFLSDKYN-------AFVDTLIKSFRNHPVNFEFVPEDKSSK--QRQFID----- 198 Query: 130 KKRIQKVDSIAAALI 144 DSIAA I Sbjct: 199 -NMKLDKDSIAAINI 212 >gi|223933143|ref|ZP_03625135.1| RNA binding S1 domain protein [Streptococcus suis 89/1591] gi|223898204|gb|EEF64573.1| RNA binding S1 domain protein [Streptococcus suis 89/1591] Length = 713 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P ++++ Q +L I Sbjct: 301 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTQVIYPVEPAGQRQIAQAKKDLADLIGQ 357 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV +++ V +V +E +V + L Sbjct: 358 YQVEIIAIG-----NGTAS---RESEAFVADLLKDFPDVSYVIVNESGASVYSASEL 406 >gi|330833236|ref|YP_004402061.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3] gi|329307459|gb|AEB81875.1| RNA binding S1 domain protein [Streptococcus suis ST3] Length = 713 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P ++++ Q +L I Sbjct: 301 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTQVIYPVEPAGQRQIAQAKKDLADLIGQ 357 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV +++ V +V +E +V + L Sbjct: 358 YQVEIIAIG-----NGTAS---RESEAFVADLLKDFPDVSYVIVNESGASVYSASEL 406 >gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 776 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + +ID G R G +A+ D + A P K+ + Sbjct: 313 NLKDLLMAAPAGPRVTLAIDPGL-RTGSKIAVVDETGKLLDTATIYPHAPHNKIAEAGKV 371 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 +L+FI + IG NG+ T +FV +I Sbjct: 372 VLAFIAKYQVNLIAIG-----NGTAS---RETDSFVAQLIK 404 >gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N] gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N] Length = 790 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 15/106 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + + +D G R G +A+ D + A PF R T Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVIDRTGKVVDTATVYPFEPRMDRKGTINT 389 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L + + IG NG+ + V M+ + + Sbjct: 390 LAALCAKHKVELIAIG-----NGTAS---RESEKLVGEMMSQFSEL 427 >gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM 2380] gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM 2380] Length = 759 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 16/116 (13%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70 ++ + +D G R G LA D R+ A P + ++ +LL I T I Sbjct: 323 SRRVLGVDPGL-RTGSKLAAVDGTGRYLEDATIYPHTGKSQIEPARAQLLRLIQTHGIEM 381 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124 IG NG+ G + FV + D V +P V +E +V SA I + Sbjct: 382 VAIG-----NGTAGREMDL---FVRETLRDAGVQLPVVMVNEAGASVYSASDIARE 429 >gi|294795166|ref|ZP_06760300.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|294453958|gb|EFG22333.1| conserved hypothetical protein [Veillonella sp. 3_1_44] Length = 175 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 30/140 (21%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G ++ G+AI P R ++ K+ +L+ I + G Sbjct: 7 ILAVDPGNEKTGVAIVTPSGTMV-CRKIIMTKQFNGEIERILT--EYYGIVHMVCG---- 59 Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133 NG+ P + R + DE +T A+++ N R Sbjct: 60 -NGTNHKYLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKI 110 Query: 134 ---------QKVDSIAAALI 144 + VD + A +I Sbjct: 111 IPTSMQFPPEPVDDLTAFVI 130 >gi|24379213|ref|NP_721168.1| transcriptional accessory protein [Streptococcus mutans UA159] gi|24377125|gb|AAN58474.1|AE014917_5 conserved hypothetical protein; possible transcriptional accessory protein [Streptococcus mutans UA159] Length = 708 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q EL I Sbjct: 305 KGKVVLGFDPAF---RTGAKLAVVDQTGKLIMTQVIYPVPPASQSKINQAKSELAELIKR 361 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV ++ V +V +E +V + L Sbjct: 362 YAIEIIAIG-----NGTAS---RESEAFVAEILKDFPQVSYVLVNESGASVYSASEL 410 >gi|160902641|ref|YP_001568222.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95] gi|160360285|gb|ABX31899.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95] Length = 720 Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%) Query: 15 PNQPIASIDLGTKRIG---LAISDPGRRFA--HPRPFLVRKKVTQTALELLSFITTENIA 69 N+ + +ID G R G +A+ + G A P + + + ++ I N+ Sbjct: 308 KNKRVLAIDPGF-RTGCKVVALDEMGNFLANDTIFPVPPQNDIENSEKIMMGLIQKYNVN 366 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122 IG NG+ T+ FV ++I + K+ + ++F DE +V + L Sbjct: 367 LIAIG-----NGTAS---RETQQFVVDLIKKNKLNLKYIFVDESGASVYSASKL 412 >gi|300785862|ref|YP_003766153.1| ROK family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795376|gb|ADJ45751.1| ROK family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 400 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 20/73 (27%) Query: 18 PIASIDLGTKRIGLAISDPGR-RFAH----------PRPFLVRKKVTQTALELLSFITTE 66 + ++D+G +G+A++D AH P P L R EL + I E Sbjct: 83 RVLAVDVGATSVGVAVTDASCEVLAHTVEDGDVRQGPHPVLRR------VAELAAKIRDE 136 Query: 67 NIAAFI---IGLP 76 I IGLP Sbjct: 137 APGRLIAAGIGLP 149 >gi|329895297|ref|ZP_08270939.1| UDP-glucose dehydrogenase [gamma proteobacterium IMCC3088] gi|328922419|gb|EGG29762.1| UDP-glucose dehydrogenase [gamma proteobacterium IMCC3088] Length = 389 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 22/115 (19%) Query: 36 PGRRFAHPRPFLVRKKV---TQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRA 92 P A L ++ + E + E + I+G + R Sbjct: 121 PVGFTARLNQTLDTDRIVFSPEFLREGQALKDNEYPSRIIVG----------AQTEQARE 170 Query: 93 FVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VDSIAAA 142 F + +KV VP + D + A+ I + N R+ +D+ AA Sbjct: 171 FAELLQYAAKKVDVPVLLAD----STEAEAIKLFANTYLAMRVAYFNELDTYAAV 221 >gi|91788399|ref|YP_549351.1| RNA-binding S1 [Polaromonas sp. JS666] gi|91697624|gb|ABE44453.1| RNA binding S1 [Polaromonas sp. JS666] Length = 803 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 15/107 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G+ A+ D + A P RK + Sbjct: 332 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRKDWDGSLHA 390 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105 L + IG NG+ T ++I V Sbjct: 391 LAKLCEKHGVNLIAIG-----NGTAS---RETDKLAADLIKLMAKVE 429 >gi|229816013|ref|ZP_04446334.1| hypothetical protein COLINT_03066 [Collinsella intestinalis DSM 13280] gi|229808327|gb|EEP44108.1| hypothetical protein COLINT_03066 [Collinsella intestinalis DSM 13280] Length = 286 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 23/129 (17%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 A P + R +T + +IA + P M+G + RV + RA V Sbjct: 138 IALPL-TIARVPAKETLARVEQVAQRLDIAGVLDKYPYQMSGGQQQRVAAARALV----- 191 Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAALILQEVLD 150 + DE L + +A ++L++ ++R+ + + DS AA + Sbjct: 192 --TDPAIILADEPTGALDSKNA-RLLLESIETMNRQYQATVLMVTHDSFAA-----SYTN 243 Query: 151 RISFLESSK 159 R+ F+ + Sbjct: 244 RVLFIRDGR 252 >gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens Rf4] gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4] Length = 757 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 15/102 (14%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA 70 ++ + ID G R G LA D RF V ELL I + Sbjct: 323 SKRVLGIDPGL-RTGSKLAAVDETGRFLSHCTIYPHTGSSNVEPAKRELLRIIDSNRCEI 381 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDE 111 +G NG+ G + F + + + +P V +E Sbjct: 382 IAVG-----NGTAGREMEL---FARQTLTEAGLRLPVVVVNE 415 >gi|319946581|ref|ZP_08020815.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641] gi|319746629|gb|EFV98888.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641] Length = 708 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P ++ EL I Sbjct: 305 KGRVVLGFDPAF---RTGAKLAVVDQTGKMLTTQVIYPVAPAKATQIEAAKEELKRLIRQ 361 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 ++ IG NG+ + AFV ++ V +V +E +V + L Sbjct: 362 YSVEIIAIG-----NGTAS---RESEAFVAEVLKEVPNVSYVIVNESGASVYSASEL 410 >gi|290580778|ref|YP_003485170.1| hypothetical protein SmuNN2025_1252 [Streptococcus mutans NN2025] gi|254997677|dbj|BAH88278.1| conserved hypothetical protein [Streptococcus mutans NN2025] Length = 708 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q EL I Sbjct: 305 KGKVVLGFDPAF---RTGAKLAVVDQTGKLIMTQVIYPVPPAGQSKINQAKSELAELIKR 361 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV ++ V +V +E +V + L Sbjct: 362 YAIEIIAIG-----NGTAS---RESEAFVAEILKDFPQVSYVLVNESGASVYSASEL 410 >gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32] gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32] Length = 756 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 18/117 (15%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69 N+ + +D G R G LA D RF + + ELL I + Sbjct: 323 NKRVLGVDPGL-RTGSKLAAVDETGRF-LGHCTIYPHTGSGNIEPAKRELLRMIHSHQSE 380 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124 IG NG+ G + FV + + + +P V +E +V SA I + Sbjct: 381 LVAIG-----NGTAGREMEL---FVRQTLTEAGLRLPVVVVNEAGASVYSASDIARE 429 >gi|77413082|ref|ZP_00789283.1| S1 RNA binding domain protein [Streptococcus agalactiae 515] gi|77160875|gb|EAO71985.1| S1 RNA binding domain protein [Streptococcus agalactiae 515] Length = 764 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +EL I Sbjct: 351 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 407 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ V +V +E +V + L Sbjct: 408 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 456 >gi|183603638|ref|ZP_02964444.1| protein tex [Streptococcus pneumoniae CDC3059-06] gi|183575709|gb|EDT96237.1| protein tex [Streptococcus pneumoniae CDC3059-06] Length = 805 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 397 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 452 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 453 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 504 Query: 120 QIL 122 L Sbjct: 505 SEL 507 >gi|157412608|ref|YP_001483474.1| hypothetical protein P9215_02711 [Prochlorococcus marinus str. MIT 9215] gi|157387183|gb|ABV49888.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9215] Length = 145 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 42/149 (28%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLS-----FITTENIA 69 + +ID G + GL + KKV + + ELL IT E+I+ Sbjct: 3 KVITIDPGKSKCGL-----------VLAEISEKKVYEAIILKSELLENYVSYLITAEDIS 51 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129 IIG NG+ + F V +DE+ TT A+ ++ R Sbjct: 52 QIIIG-----NGTSSREIREKLYFFKK--------EIVTFDEKNTTYRAKARYFELFPIR 98 Query: 130 KKR----------IQKVDSIAAALILQEV 148 + + +D+I+A +IL++ Sbjct: 99 GLKFLIPREVFILNKNLDAISALIILEDY 127 >gi|124024147|ref|YP_001018454.1| hypothetical protein P9303_24581 [Prochlorococcus marinus str. MIT 9303] gi|123964433|gb|ABM79189.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303] Length = 152 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 35/146 (23%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN----IAAFII 73 + ++D G + GL A V + A +L I + +I Sbjct: 12 KLVAVDPGRNKCGL-------VLADTATSAVLEGKVVAAAAVLDLIMHWQNQAPLEGILI 64 Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSR 129 G NG+ + N++ + +ER +T+ A+ + N R Sbjct: 65 G-----NGTSSE-------YWQNLLLHIAPLHV--VEERGSTLRARHRYWELWPPSNWRR 110 Query: 130 KKRIQKV------DSIAAALILQEVL 149 + D+IAA ++L++ L Sbjct: 111 WLPRGMILPPHHLDAIAAMVLLEDHL 136 >gi|77409101|ref|ZP_00785816.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1] gi|77172279|gb|EAO75433.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1] Length = 764 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +EL I Sbjct: 351 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 407 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ V +V +E +V + L Sbjct: 408 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 456 >gi|77406413|ref|ZP_00783472.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B] gi|77174977|gb|EAO77787.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B] Length = 640 Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +EL I Sbjct: 326 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 382 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ V +V +E +V + L Sbjct: 383 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 431 >gi|319744762|gb|EFV97103.1| YhgF like protein [Streptococcus agalactiae ATCC 13813] Length = 747 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +EL I Sbjct: 334 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 390 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ V +V +E +V + L Sbjct: 391 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 439 >gi|76798194|ref|ZP_00780445.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21] gi|77410770|ref|ZP_00787128.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111] gi|76586457|gb|EAO62964.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21] gi|77163149|gb|EAO74102.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111] Length = 747 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +EL I Sbjct: 334 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 390 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ V +V +E +V + L Sbjct: 391 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 439 >gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira defluvii] gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira defluvii] Length = 799 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + +L+ + + + +D G R G +A+ D + A P R Sbjct: 333 NLHELLLAAPAGPKAVLGLDPGL-RTGCKVAVVDATGKLLDTATIYPHQPRNDWQGALAT 391 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 ++ + + IG NG+ T F ++ Sbjct: 392 IVQLVLRHGVELISIG-----NGTAS---RETDKFAAEVVK 424 >gi|307944634|ref|ZP_07659974.1| protein YhgF [Roseibium sp. TrichSKD4] gi|307772383|gb|EFO31604.1| protein YhgF [Roseibium sp. TrichSKD4] Length = 810 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + +D G R G+ A+ D + A PF R V+ + Sbjct: 332 NLKDLLLAAPAGAKATLGLDPGI-RTGVKVAVVDETGKLIDTATIYPFQPRNDVSGSRAT 390 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 LL+ I + IG NG+ Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDK 416 >gi|169833704|ref|YP_001694361.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae Hungary19A-6] gi|168996206|gb|ACA36818.1| S1 RNA binding domain protein [Streptococcus pneumoniae Hungary19A-6] Length = 790 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 382 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 437 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 438 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 489 Query: 120 QIL 122 L Sbjct: 490 SEL 492 >gi|22536896|ref|NP_687747.1| transcriptional accessory protein Tex [Streptococcus agalactiae 2603V/R] gi|25010809|ref|NP_735204.1| hypothetical protein gbs0754 [Streptococcus agalactiae NEM316] gi|76788092|ref|YP_329480.1| S1 RNA-binding domain-containing protein [Streptococcus agalactiae A909] gi|22533747|gb|AAM99619.1|AE014225_2 transcriptional accessory protein Tex, putative [Streptococcus agalactiae 2603V/R] gi|23095163|emb|CAD46398.1| Unknown [Streptococcus agalactiae NEM316] gi|76563149|gb|ABA45733.1| S1 RNA binding domain protein [Streptococcus agalactiae A909] Length = 720 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +EL I Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 412 >gi|238019694|ref|ZP_04600120.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748] gi|237863735|gb|EEP65025.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748] Length = 175 Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 38/144 (26%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV---TQTALELLSFITT-ENIAAFIIG 74 I ++D G ++ G+A P +V +K+ Q E+ +T I + G Sbjct: 7 ILAVDPGNEKTGVA-------IVTPSGTMVCRKIIMTKQFNDEIERTLTEYYGIVHIVCG 59 Query: 75 LPLNMNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 NG+ P + R + DE +T A+++ N Sbjct: 60 -----NGTNHKYLYPSLQQI--------GRNHRITTSLIDESHSTEEARKLYWKYNPPTG 106 Query: 131 KRI----------QKVDSIAAALI 144 R + VD + A +I Sbjct: 107 WRKIIPTSMQFPPEPVDDLTAFVI 130 >gi|172079513|ref|ZP_02932128.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00] gi|172043456|gb|EDT51502.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00] Length = 790 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 382 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 437 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 438 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 489 Query: 120 QIL 122 L Sbjct: 490 SEL 492 >gi|322389951|ref|ZP_08063491.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 903] gi|321143387|gb|EFX38825.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 903] Length = 718 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D A P ++ Q EL S I Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKELSSLIKE 371 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420 >gi|307704740|ref|ZP_07641637.1| protein tex [Streptococcus mitis SK597] gi|307621719|gb|EFO00759.1| protein tex [Streptococcus mitis SK597] Length = 709 Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ ++ +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEESKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYDVEIIAIG-----NGTAS---RESEAFVAEVLKEFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|302875853|ref|YP_003844486.1| Tex-like protein-like [Clostridium cellulovorans 743B] gi|307689286|ref|ZP_07631732.1| Tex-like protein-like [Clostridium cellulovorans 743B] gi|302578710|gb|ADL52722.1| Tex-like protein-like [Clostridium cellulovorans 743B] Length = 719 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 12/107 (11%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQTALE----LLSF 62 L+++ + + D G R G +A+ D + V K + E L Sbjct: 303 LMQAPIKGKTVLGFDPGF-RTGCKIAVLDETGKILDTHTAYVTSKGKEGLQEEKAKLKEL 361 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 I ++ +G NG+ A + + ++ + Sbjct: 362 ILKHDVDVISLG-----NGTASRESEEIIAELLKEVKNEIGKEIYYV 403 >gi|312868311|ref|ZP_07728511.1| Tex-like protein N-terminal domain protein [Streptococcus parasanguinis F0405] gi|311096056|gb|EFQ54300.1| Tex-like protein N-terminal domain protein [Streptococcus parasanguinis F0405] Length = 718 Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D A P ++ Q EL S I Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKELSSLIKE 371 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420 >gi|332703310|ref|ZP_08423398.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay] gi|332553459|gb|EGJ50503.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay] Length = 710 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 20/128 (15%) Query: 5 LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTAL 57 + +L+ + Q I ++D G R G LA D R H + K+ + Sbjct: 304 NLRELLLASPLGQKRIMALDPGF-RTGAKLACLDAQGRLLH-HETIFPTGSEKQSREAGT 361 Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV- 116 + I A +G NG+ G T AFV + V V +E +V Sbjct: 362 RVRELTARFAIEAVAVG-----NGTAG---RETEAFVRGLA--LPGVAVVMVNESGASVY 411 Query: 117 SAQQILID 124 SA +I + Sbjct: 412 SASEIARE 419 >gi|282855412|ref|ZP_06264733.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter piscolens W5455] gi|282586708|gb|EFB91955.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter piscolens W5455] Length = 145 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 24/146 (16%) Query: 20 ASIDLGTKRIGLAI-SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 ID G ++ G A+ G+ A + +K+ AL+ LP Sbjct: 3 LGIDPGRQKFGWALAGGEGKLVASG--IVPAEKLEDFALKAARSCKDCEEWRLEGELPE- 59 Query: 79 MNGSE-----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133 +G G R FV + R E TT+ A+++ DM+ R + Sbjct: 60 -DGKIAKVFCGDGTGHAR-FVQALARRFA---VELVGELNTTLEARRLYWDMHPPRGLKR 114 Query: 134 QK----------VDSIAAALILQEVL 149 VD +AA IL+ L Sbjct: 115 FVPLSLLVPPRCVDDLAAFCILRRAL 140 >gi|306831829|ref|ZP_07464985.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426027|gb|EFM29143.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 710 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +L I T Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 YGVEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412 >gi|288905732|ref|YP_003430954.1| S1 RNA binding domain protein [Streptococcus gallolyticus UCN34] gi|325978764|ref|YP_004288480.1| RNA binding S1 domain-containing protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732458|emb|CBI14030.1| putative S1 RNA binding domain protein [Streptococcus gallolyticus UCN34] gi|325178692|emb|CBZ48736.1| RNA binding S1 domain protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 710 Score = 36.8 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +L I T Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 YGVEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412 >gi|257455894|ref|ZP_05621111.1| protein tex [Enhydrobacter aerosaccus SK60] gi|257446640|gb|EEV21666.1| protein tex [Enhydrobacter aerosaccus SK60] Length = 849 Score = 36.8 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%) Query: 9 LVKSLKPNQPIASIDLGTKRIGL--AI----------SDPGRRFAHPRPFLVRKKVTQTA 56 L+ + + I +D G + G+ A+ SD A PF KV + Sbjct: 342 LMAAPAGQKTILGVDPGIRH-GVKMAVVDSLGHVAKNSDDSFAIATVYPFAPDNKVDEAK 400 Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYV---PFVFWDE 111 + + ++ IG NG+ + N + P V +E Sbjct: 401 QTIADLLKNHHVNLIAIG-----NGTASRETDALIKEILAENSAQGNGDIKAVPVV-VNE 454 Query: 112 RLTTV-----SAQQILIDMNVSRK 130 +V A Q L +++VS + Sbjct: 455 SGASVYSASELASQELQELDVSIR 478 >gi|329121339|ref|ZP_08249965.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus DSM 19965] gi|327469748|gb|EGF15214.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus DSM 19965] Length = 144 Score = 36.8 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G+++ G+A+ + + +++ + L I I IG Sbjct: 2 ILSIDPGSEKTGIAVVKKDGNLVM-KKIIKTERLEEEIKTLTKKIE---ITETAIG---- 53 Query: 79 MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133 NG+ ++ M +P DE+ TT +Q N + + Sbjct: 54 -NGTHHKKLEKRIEKLYEEMKKE---IPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109 Query: 134 ------QKVDSIAAALI 144 + VD A +I Sbjct: 110 GMRTVDKPVDDYVAWVI 126 >gi|319408868|emb|CBI82525.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 155 Score = 36.8 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 I +DLGTK G AIS A ++ + L F Sbjct: 7 TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50 >gi|124266982|ref|YP_001020986.1| putative transcription accessory protein [Methylibium petroleiphilum PM1] gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium petroleiphilum PM1] Length = 793 Score = 36.8 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 15/106 (14%) Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIGL--AI-SDPGRR--FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G+ A+ SD G+ A P RK Sbjct: 323 NLRDLLLAAPAGKRVVMGLDPGI-RTGVKVAVVSDTGKVLDTATVYPHEPRKDWDGAIHT 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L T + IG NG+ T ++I R + Sbjct: 382 LGRLAATHGVNLIAIG-----NGTAS---RETDKLAADLIKRIQQL 419 >gi|315613267|ref|ZP_07888176.1| YhgF like protein [Streptococcus sanguinis ATCC 49296] gi|315314502|gb|EFU62545.1| YhgF like protein [Streptococcus sanguinis ATCC 49296] Length = 727 Score = 36.8 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 319 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 374 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 375 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAKVLKDFPEVSYVIVNESGASVYSA 426 Query: 120 QIL 122 L Sbjct: 427 SEL 429 >gi|306829611|ref|ZP_07462801.1| YhgF like protein [Streptococcus mitis ATCC 6249] gi|304428697|gb|EFM31787.1| YhgF like protein [Streptococcus mitis ATCC 6249] Length = 709 Score = 36.8 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEILKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|322376679|ref|ZP_08051172.1| S1 RNA binding domain protein [Streptococcus sp. M334] gi|321282486|gb|EFX59493.1| S1 RNA binding domain protein [Streptococcus sp. M334] Length = 718 Score = 36.8 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 310 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 365 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 366 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 417 Query: 120 QIL 122 L Sbjct: 418 SEL 420 >gi|309800173|ref|ZP_07694359.1| toxin expression - transcriptional accessory protein [Streptococcus infantis SK1302] gi|308116220|gb|EFO53710.1| toxin expression - transcriptional accessory protein [Streptococcus infantis SK1302] Length = 686 Score = 36.8 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 290 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 345 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 346 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 397 Query: 120 QIL 122 L Sbjct: 398 SEL 400 >gi|319408082|emb|CBI81735.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 155 Score = 36.8 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62 I +DLGTK G AIS A ++ + L F Sbjct: 7 TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50 >gi|254501681|ref|ZP_05113832.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11] gi|222437752|gb|EEE44431.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11] Length = 809 Score = 36.8 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + +D G R G+ A+ D + A PF R + + Sbjct: 332 NLKDLLLAAPAGSKATLGLDPGI-RTGVKVAVVDETGKLIDTATIYPFQPRNDLAGSRNT 390 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 LL+ I + IG NG+ Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDK 416 >gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425] gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425] Length = 763 Score = 36.8 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 16/114 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQ---TALE 58 + +L+ + + +ID G R G + + DP +F + + V Q Sbjct: 308 NLRELLLAAPAGMKSTLAIDPGF-RTGCKVVVLDPTGKFLEYQTIFPHQSVEQRQKAGQT 366 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-VFWDE 111 LL I + +G NG+ G T FV ++ P V +E Sbjct: 367 LLKLIDRYQVELIAVG-----NGTAG---RETDEFVAELLQTLEPKPVKVMVNE 412 >gi|15902852|ref|NP_358402.1| toxin expression - transcriptional accessory protein [Streptococcus pneumoniae R6] gi|149002452|ref|ZP_01827386.1| Toxin expression - transcriptional accessory protein [Streptococcus pneumoniae SP14-BS69] gi|15458408|gb|AAK99612.1| Toxin expression - transcriptional accessory protein [Streptococcus pneumoniae R6] gi|147759389|gb|EDK66381.1| Toxin expression - transcriptional accessory protein [Streptococcus pneumoniae SP14-BS69] Length = 715 Score = 36.8 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 307 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 362 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 363 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 414 Query: 120 QIL 122 L Sbjct: 415 SEL 417 >gi|221231683|ref|YP_002510835.1| transcription accessory protein [Streptococcus pneumoniae ATCC 700669] gi|220674143|emb|CAR68663.1| putative transcription accessory protein [Streptococcus pneumoniae ATCC 700669] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|194398593|ref|YP_002037544.1| S1 RNA binding domain [Streptococcus pneumoniae G54] gi|194358260|gb|ACF56708.1| S1 RNA binding domain [Streptococcus pneumoniae G54] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|332204911|gb|EGJ18976.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47901] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain) [Burkholderia rhizoxinica HKI 454] gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain) [Burkholderia rhizoxinica HKI 454] Length = 801 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 19/108 (17%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTA 56 ++DL+ + + + +D G R G +A+ D A P R+ + Sbjct: 340 NLKDLLLAAPAGPRAVIGLDPGL-RTGVKVAVVDRTGKLLATDTIYPHE--PRRDWDGSL 396 Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L IG NG+ T +I R + Sbjct: 397 ARLARLAQATQAELISIG-----NGTAS---RETDKLASELIARHPEL 436 >gi|225858705|ref|YP_002740215.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585] gi|225720875|gb|ACO16729.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|182683855|ref|YP_001835602.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|307127540|ref|YP_003879571.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B] gi|182629189|gb|ACB90137.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|306484602|gb|ADM91471.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B] Length = 715 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 307 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 362 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 363 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 414 Query: 120 QIL 122 L Sbjct: 415 SEL 417 >gi|148992962|ref|ZP_01822581.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|168490278|ref|ZP_02714477.1| protein tex [Streptococcus pneumoniae SP195] gi|147928414|gb|EDK79430.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|183571410|gb|EDT91938.1| protein tex [Streptococcus pneumoniae SP195] gi|332073238|gb|EGI83717.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17570] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|148984645|ref|ZP_01817913.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71] gi|149010452|ref|ZP_01831823.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|168490996|ref|ZP_02715139.1| protein tex [Streptococcus pneumoniae CDC0288-04] gi|225861200|ref|YP_002742709.1| S1 RNA binding domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298229397|ref|ZP_06963078.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255859|ref|ZP_06979445.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503083|ref|YP_003725023.1| S1 domain RNA-binding protein [Streptococcus pneumoniae TCH8431/19A] gi|147764933|gb|EDK71862.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|147923036|gb|EDK74151.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71] gi|183574580|gb|EDT95108.1| protein tex [Streptococcus pneumoniae CDC0288-04] gi|225727709|gb|ACO23560.1| S1 RNA binding domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298238678|gb|ADI69809.1| S1 domain RNA-binding protein [Streptococcus pneumoniae TCH8431/19A] gi|301799893|emb|CBW32471.1| putative transcription accessory protein [Streptococcus pneumoniae OXC141] gi|327389190|gb|EGE87535.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04375] gi|332202763|gb|EGJ16832.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41317] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|148997004|ref|ZP_01824658.1| transcriptional regulator, putative [Streptococcus pneumoniae SP11-BS70] gi|168575569|ref|ZP_02721505.1| protein tex [Streptococcus pneumoniae MLV-016] gi|307067562|ref|YP_003876528.1| transcriptional accessory protein [Streptococcus pneumoniae AP200] gi|147756704|gb|EDK63744.1| transcriptional regulator, putative [Streptococcus pneumoniae SP11-BS70] gi|183578556|gb|EDT99084.1| protein tex [Streptococcus pneumoniae MLV-016] gi|306409099|gb|ADM84526.1| Transcriptional accessory protein [Streptococcus pneumoniae AP200] Length = 709 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|322375346|ref|ZP_08049859.1| S1 RNA binding domain protein [Streptococcus sp. C300] gi|321279609|gb|EFX56649.1| S1 RNA binding domain protein [Streptococcus sp. C300] Length = 709 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|328542586|ref|YP_004302695.1| cytochrome c oxidase, subunit I [polymorphum gilvum SL003B-26A1] gi|326412332|gb|ADZ69395.1| Cytochrome c oxidase, subunit I [Polymorphum gilvum SL003B-26A1] Length = 803 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 ++DL+ + + +D G R G+ A+ D + A PF R V + Sbjct: 332 NLKDLLLAAPAGARATLGLDPGI-RTGVKVAVVDATGKLVDTATIYPFQPRNDVAGSRAT 390 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 LL+ I + IG NG+ Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDR 416 >gi|237820844|ref|ZP_04596689.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI 1974M2] Length = 725 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 317 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 372 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 373 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 424 Query: 120 QIL 122 L Sbjct: 425 SEL 427 >gi|149007144|ref|ZP_01830808.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74] gi|147761182|gb|EDK68149.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74] Length = 709 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|183603130|ref|ZP_02964306.1| protein tex [Streptococcus pneumoniae CDC1087-00] gi|183570991|gb|EDT91519.1| protein tex [Streptococcus pneumoniae CDC1087-00] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|332075520|gb|EGI85988.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17545] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|307708663|ref|ZP_07645126.1| toxin expression - transcriptional accessory protein [Streptococcus mitis NCTC 12261] gi|307615237|gb|EFN94447.1| toxin expression - transcriptional accessory protein [Streptococcus mitis NCTC 12261] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|116516081|ref|YP_816286.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae D39] gi|148988340|ref|ZP_01819787.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73] gi|225856571|ref|YP_002738082.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031] gi|237649296|ref|ZP_04523548.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI 1974] gi|116076657|gb|ABJ54377.1| S1 RNA binding domain [Streptococcus pneumoniae D39] gi|147926021|gb|EDK77095.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73] gi|225725987|gb|ACO21839.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031] gi|332076190|gb|EGI86656.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41301] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|301794055|emb|CBW36456.1| putative transcription accessory protein [Streptococcus pneumoniae INV104] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|289167924|ref|YP_003446193.1| transcriptional regulator [Streptococcus mitis B6] gi|288907491|emb|CBJ22328.1| transcriptional regulator [Streptococcus mitis B6] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|225854413|ref|YP_002735925.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA] gi|225723646|gb|ACO19499.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|149019492|ref|ZP_01834811.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72] gi|147930867|gb|EDK81847.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|15900789|ref|NP_345393.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|111657235|ref|ZP_01408005.1| hypothetical protein SpneT_02001548 [Streptococcus pneumoniae TIGR4] gi|303254587|ref|ZP_07340690.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|303259816|ref|ZP_07345791.1| transcriptional regulator, putative [Streptococcus pneumoniae SP-BS293] gi|303262231|ref|ZP_07348175.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS292] gi|303264652|ref|ZP_07350570.1| transcriptional regulator, putative [Streptococcus pneumoniae BS397] gi|303267582|ref|ZP_07353426.1| transcriptional regulator, putative [Streptococcus pneumoniae BS457] gi|303269819|ref|ZP_07355566.1| transcriptional regulator, putative [Streptococcus pneumoniae BS458] gi|14972382|gb|AAK75033.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|301801754|emb|CBW34464.1| putative transcription accessory protein [Streptococcus pneumoniae INV200] gi|302598439|gb|EFL65482.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|302636554|gb|EFL67045.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS292] gi|302639021|gb|EFL69481.1| transcriptional regulator, putative [Streptococcus pneumoniae SP-BS293] gi|302640646|gb|EFL71046.1| transcriptional regulator, putative [Streptococcus pneumoniae BS458] gi|302642880|gb|EFL73183.1| transcriptional regulator, putative [Streptococcus pneumoniae BS457] gi|302645739|gb|EFL75968.1| transcriptional regulator, putative [Streptococcus pneumoniae BS397] Length = 709 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 788 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + + IG NG+ T +++ Sbjct: 382 LARLVQKHGVQLVAIG-----NGTAS---RETDKLAADLLK 414 >gi|307709284|ref|ZP_07645742.1| protein tex [Streptococcus mitis SK564] gi|307619867|gb|EFN98985.1| protein tex [Streptococcus mitis SK564] Length = 709 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli AAC00-1] gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1] Length = 788 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + + IG NG+ T +++ Sbjct: 382 LARLVQKHGVQLVAIG-----NGTAS---RETDKLAADLLK 414 >gi|332201372|gb|EGJ15442.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368] Length = 709 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|296876119|ref|ZP_06900173.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 15912] gi|296432830|gb|EFH18623.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 15912] Length = 718 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D A P ++ Q +L S I Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKDLSSLIKE 371 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420 >gi|121533952|ref|ZP_01665778.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1] gi|121307463|gb|EAX48379.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1] Length = 723 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 22/125 (17%) Query: 16 NQPIASIDLGTKRIGL--A-ISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAA 70 + +D G R G A +S G A +L + E L+ I + + Sbjct: 317 GHTVMGLDPG-YRTGCKMAVVSPTGTVLATGTLYLTHSDAQRERAVKEALATIESYGVTL 375 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-----SAQQILI 123 IG NG+ FV +I+ +P + +E +V A+ L Sbjct: 376 IAIG-----NGTASYETE---EFVARLINDH-QLPIHYLIVNEAGASVYSASKLAKDELP 426 Query: 124 DMNVS 128 D++VS Sbjct: 427 DLDVS 431 >gi|118364982|ref|XP_001015712.1| hypothetical protein TTHERM_00077710 [Tetrahymena thermophila] gi|89297479|gb|EAR95467.1| hypothetical protein TTHERM_00077710 [Tetrahymena thermophila SB210] Length = 533 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 30/114 (26%) Query: 44 RPFLVRKKVTQTA------LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97 + +T +L I EN+ +IG F + Sbjct: 2 LETIETAGDARTFNNPIVIAKLKKHIQKENVKGLVIG---------------ATNF-KRL 45 Query: 98 IDRKVYVPFVFWDERLTTVSAQQILID------MNVSRKKRIQKVDSIAAALIL 145 + +Y DE TT +++QIL + N++ K+ D A++L+L Sbjct: 46 LINLIYQNIKKVDESFTTFASKQILEEIAFNYNENLNLKQHKDLKD--ASSLLL 97 >gi|77164807|ref|YP_343332.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707] gi|254434282|ref|ZP_05047790.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27] gi|76883121|gb|ABA57802.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707] gi|207090615|gb|EDZ67886.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27] Length = 765 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 14/92 (15%) Query: 17 QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 +PI +D G R G +A+ D + A P +K+ L S + + Sbjct: 322 RPILGLDPGF-RTGVKVAVIDETGKLLETATIYPHPPQKQWDAAIDILSSLLKKHRVELV 380 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103 IG NG+ T V ++ + Sbjct: 381 GIG-----NGTAS---RETEQLVVELLKKFPQ 404 >gi|306825121|ref|ZP_07458463.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432557|gb|EFM35531.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 709 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|331266273|ref|YP_004325903.1| S1 RNA binding domain protein [Streptococcus oralis Uo5] gi|326682945|emb|CBZ00562.1| S1 RNA binding domain protein [Streptococcus oralis Uo5] Length = 732 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 324 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 379 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 380 SDLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 431 Query: 120 QIL 122 L Sbjct: 432 SEL 434 >gi|306833951|ref|ZP_07467075.1| YhgF like protein [Streptococcus bovis ATCC 700338] gi|304423952|gb|EFM27094.1| YhgF like protein [Streptococcus bovis ATCC 700338] Length = 708 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +L I T Sbjct: 305 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 361 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV + V +V +E +V + L Sbjct: 362 YGVEIIAIG-----NGTAS---RESEAFVAQALKDFPDVSYVIVNESGASVYSASEL 410 >gi|163867791|ref|YP_001608995.1| hypothetical protein Btr_0550 [Bartonella tribocorum CIP 105476] gi|161017442|emb|CAK01000.1| phage-related conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 159 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 Q I +DLGTK G A+ D ++ + L F Sbjct: 6 QTILCLDLGTKT-GWALCDADGFITSDTEHFQSRRFEGGGMRYLRFKK 52 >gi|225181236|ref|ZP_03734681.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168016|gb|EEG76822.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1] Length = 713 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 15/114 (13%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69 P + I +D G R G LA D + A P K +A + I ++ Sbjct: 314 PGKRILGLDPG-YRTGCKLACVDQTGKLLETAVIYPTPPLNKKEASAAVVKKLIEKHDLN 372 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQIL 122 IG NG+ G + F+ +I + + +E +V + L Sbjct: 373 TVAIG-----NGTAG---RESEEFIAEVISEMNREIEYTVVNEAGASVYSASKL 418 >gi|139438397|ref|ZP_01771913.1| Hypothetical protein COLAER_00903 [Collinsella aerofaciens ATCC 25986] gi|133775936|gb|EBA39756.1| Hypothetical protein COLAER_00903 [Collinsella aerofaciens ATCC 25986] Length = 261 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 18/113 (15%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 A P + R + + + +I+ + P M+G + RV + RA V Sbjct: 113 IALPL-TIARTNSAEISTRVQDVAARLSISQVLDKYPYQMSGGQQQRVAAARALV----- 166 Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAAL 143 + DE L + SA ++L++ ++R+ R + DS AA+ Sbjct: 167 --TDPTMIMADEPTGALDSKSA-RLLLESLEALNRRLRATVLMVTHDSFAASY 216 >gi|310778062|ref|YP_003966395.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926] gi|309747385|gb|ADO82047.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926] Length = 356 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%) Query: 40 FAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97 A+ R K + + ++L + ++ A + P M+G + RV RA + N Sbjct: 103 IAYGLKVQKRPKAEINERVEKILKLMKMDDFATRV---PSQMSGGQQQRVSLARALIMNS 159 Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 + +DE L+ + A+ L + RK + + Sbjct: 160 G-------VLLFDEPLSNLDAKLRLHMRDEIRKLQKEV 190 >gi|314934887|ref|ZP_07842246.1| nickel ABC transporter, periplasmic nickel-binding protein [Staphylococcus caprae C87] gi|313652817|gb|EFS16580.1| nickel ABC transporter, periplasmic nickel-binding protein [Staphylococcus caprae C87] Length = 532 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 30/104 (28%) Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91 A+SD R A + R K++Q ++G E P Sbjct: 292 AVSDKTVRQALGY-MVNRDKISQDI----------------------LDGQEKPATQL-- 326 Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 F N+ D +P +D T A+ +L + K Sbjct: 327 -FAKNVTDINFNMPTRQFD----TKKAEALLDEAGWKLTKEKNV 365 >gi|323697522|ref|ZP_08109434.1| ABC transporter related protein [Desulfovibrio sp. ND132] gi|323457454|gb|EGB13319.1| ABC transporter related protein [Desulfovibrio desulfuricans ND132] Length = 373 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 A P + ++ + T I + LP M+G E RV RA + Sbjct: 105 IASPL-VIRKESGEVIRERVEGIAKTLQITHVLGRLPKTMSGGEKQRVALGRALI----- 158 Query: 100 RKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQ 134 R + DE L+++ A+ +I + + R +R Q Sbjct: 159 RTPQL--FLLDEPLSSLDAKLRIELRAELRRMQREQ 192 >gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1] gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1] Length = 787 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 19/108 (17%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AH----PRPFLVRKKVTQTA 56 ++DL+ + + + +D G R G +A+ D + A P R++ Q+ Sbjct: 318 NLKDLLLAAPAGPKAVLGLDPGL-RTGVKVAVVDATGKLVATDTIYPHE--PRRQWDQSL 374 Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 L T + IG NG+ T +++ + Sbjct: 375 ASLRKLCITHGVQLVAIG-----NGTAS---RETDKLAGDLLKLVPEL 414 >gi|320547221|ref|ZP_08041514.1| YhgF like protein [Streptococcus equinus ATCC 9812] gi|320448109|gb|EFW88859.1| YhgF like protein [Streptococcus equinus ATCC 9812] Length = 710 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ Q+ +L I + Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRS 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 YGIEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412 >gi|89901260|ref|YP_523731.1| RNA-binding S1 [Rhodoferax ferrireducens T118] gi|89345997|gb|ABD70200.1| RNA binding S1 [Rhodoferax ferrireducens T118] Length = 807 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 15/112 (13%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G+ A+ D + A P RK + Sbjct: 340 NLRDLLLAAPAGPRVVLGLDPGI-RTGVKVAVVDATGKLVDTATVYPHEPRKDWDGSLHI 398 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWD 110 L ++ IG NG+ T ++I D Sbjct: 399 LARLCEKHGVSLIAIG-----NGTAS---RETDKLAADLIKLMAKSSERLMD 442 >gi|297185087|gb|ADI21196.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09] Length = 157 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 19 IASIDLGTKR-IGLAISDPGRRFAHPRPFL 47 I + D KR IG+A+ A P L Sbjct: 123 ILAFDXXXKRRIGVAVGQDITNSASPLGTL 152 >gi|270292646|ref|ZP_06198857.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143] gi|270278625|gb|EFA24471.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143] Length = 709 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASSRQIEEAKRDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|255022353|ref|ZP_05294339.1| cell wall surface anchor family protein [Listeria monocytogenes FSL J1-208] Length = 1010 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 14/120 (11%) Query: 31 LAISDPGRRFA---HPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG---LPLNM 79 LAI+ R A P + T+ T+ E+ I E + G +P Sbjct: 24 LAITAEERMIAREVTPEKSVENTDNTKGEAETTSEEVEPIIKEETPEEIVEGKVEVPTTG 83 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139 G + + + + Y F DE L+ + A+ +V++K +D + Sbjct: 84 GGMASKNLKQMK--ITELQQESTYATV-FPDEALSPIIAKAATGSDDVTQKVTQTALDKV 140 >gi|210630872|ref|ZP_03296646.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279] gi|210160306|gb|EEA91277.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279] Length = 835 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 13/113 (11%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69 + ++D G R G +A+ D + P R+ V T ELL I Sbjct: 429 RGARVIALDPG-YRAGCKVAVLDEYGKLLDHTILYPTPPRRDVAGTKRELLRLTRKHRIN 487 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 ++G NG+ + + + + +E +V + L Sbjct: 488 TIVVG-----NGTASRETEEV--VAAFIAESAPELRYTIVNEAGASVYSASKL 533 >gi|322387834|ref|ZP_08061442.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779] gi|321141336|gb|EFX36833.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779] Length = 709 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + +FV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESESFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|241864906|gb|ACS68536.1| low-specificity threonine aldolase [uncultured bacterium FLS18] Length = 407 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Query: 5 LIEDLVKSLKPN----QPIASIDLGTKRIGLAISDPGRRFAH 42 I+D ++ K + I +D GTKR G+A+ P A Sbjct: 155 TIDDFNEAAKAAGIELRVILDLDTGTKRTGIAVGKPALALAQ 196 >gi|116515277|ref|YP_802906.1| YggF [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285327|sp|Q056Y6|RUVX_BUCCC RecName: Full=Putative Holliday junction resolvase gi|116257131|gb|ABJ90813.1| putative Holliday jonction resolvase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 130 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%) Query: 42 HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101 P + K ++ I +IG P +++ I +K Sbjct: 26 TPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYK----IKKKINKKIKKFAKEIKKK 81 Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149 + F DE +T A L + +K + SI+A +IL + Sbjct: 82 FKINFFLCDENYSTTEALLFLKEKKKKKKYC---LHSISAKIILDSWI 126 >gi|312865889|ref|ZP_07726110.1| Tex-like protein N-terminal domain protein [Streptococcus downei F0415] gi|311098293|gb|EFQ56516.1| Tex-like protein N-terminal domain protein [Streptococcus downei F0415] Length = 710 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P + K+ ++ EL + T Sbjct: 307 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTHVIYPVAPASQAKIVKSKEELAELLRT 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV +++ V +V +E +V + L Sbjct: 364 YQVEIIAIG-----NGTAS---RESEAFVADILKDFPEVSYVIVNESGASVYSASEL 412 >gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42] gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42] Length = 798 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T +I Sbjct: 389 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 421 >gi|312879272|ref|ZP_07739072.1| ferredoxin [Aminomonas paucivorans DSM 12260] gi|310782563|gb|EFQ22961.1| ferredoxin [Aminomonas paucivorans DSM 12260] Length = 248 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 14/53 (26%) Query: 76 PLNMNG----SEGPRVHSTRAFVHNMIDRKVYV-PFVFW---------DERLT 114 P+N +G ++ PRV R FV ++ R+ + P + DERL+ Sbjct: 67 PVNEDGLEVLTDSPRVREARRFVIRLLLRRNALSPVIQQLAREEGVEPDERLS 119 >gi|269123065|ref|YP_003305642.1| spermidine/putrescine ABC transporter ATPase subunit [Streptobacillus moniliformis DSM 12112] gi|268314391|gb|ACZ00765.1| spermidine/putrescine ABC transporter ATPase subunit [Streptobacillus moniliformis DSM 12112] Length = 354 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 12/98 (12%) Query: 40 FAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97 A+ R +++ Q ++L + E+ A I P M+G + RV RA + Sbjct: 103 IAYGLKIQKRPKEEIKQRVDKILKLMKMEDFAERI---PSQMSGGQQQRVSLARALI--- 156 Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 + + +DE L+ + A+ L + RK +++ Sbjct: 157 ----MDSEVLLFDEPLSNLDAKLRLHMRDEIRKLQLEV 190 >gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein [Geobacter sulfurreducens KN400] Length = 761 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69 + + +D G R G LA D RF KV E L + I Sbjct: 323 GKRVLGVDPGL-RTGSKLAAVDGTGRFLEHVTIYPHAGGEGKVAAAKREFLRLVECHGIE 381 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124 +G NG+ G + F + + +P V E +V SA +I + Sbjct: 382 MVAVG-----NGTAGREMEQ---FAKETLAEGGKRIPVVMVSEAGASVYSASEIARE 430 >gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus TPSY] gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY] Length = 798 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T +I Sbjct: 389 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 421 >gi|297624691|ref|YP_003706125.1| hypothetical protein Trad_2474 [Truepera radiovictrix DSM 17093] gi|297165871|gb|ADI15582.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093] Length = 130 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 23/103 (22%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ++D G + IG+A +P R ++ T +L + + ++G Sbjct: 2 IVALDPG-RNIGVAFVNPLGRLV--YRTII------TLGDLETLLIPAG-TTVVVG---- 47 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 +G+ V + F DE T++ A+ + Sbjct: 48 -DGTGSEAVQRVLR-ARALS-------FALVDETGTSLEARAL 81 >gi|293365555|ref|ZP_06612264.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037] gi|307703510|ref|ZP_07640452.1| protein tex [Streptococcus oralis ATCC 35037] gi|291315923|gb|EFE56367.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037] gi|307622917|gb|EFO01912.1| protein tex [Streptococcus oralis ATCC 35037] Length = 709 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I ++ IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 SDLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|329851206|ref|ZP_08265963.1| hypothetical protein ABI_40470 [Asticcacaulis biprosthecum C19] gi|328840052|gb|EGF89624.1| hypothetical protein ABI_40470 [Asticcacaulis biprosthecum C19] Length = 357 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127 G+ R+ + A + R+ P +FWDE + A++ L + Sbjct: 177 GTGKTRIDACLAMSRQLQKRENNPPVIFWDEGWSPYEARKFLEAEGL 223 >gi|305663114|ref|YP_003859402.1| carbohydrate ABC transporter ATP-binding protein, CUT1 family [Ignisphaera aggregans DSM 17230] gi|304377683|gb|ADM27522.1| carbohydrate ABC transporter ATP-binding protein, CUT1 family [Ignisphaera aggregans DSM 17230] Length = 367 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 11/98 (11%) Query: 40 FAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96 A P R+ + ++ I + P ++G E RV RA V Sbjct: 96 IAFPLIARKRQLKISDDEIRKRVVEVANMLGIEHLLNRKPSQLSGGEQQRVALARALVRQ 155 Query: 97 MIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133 DE L+ + A+ ++L+ + R ++ Sbjct: 156 -------PKVFLMDEPLSNLDAKLRLLMRAELKRLQKK 186 >gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens PCA] gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA] Length = 761 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69 + + +D G R G LA D RF KV E L + I Sbjct: 323 GKRVLGVDPGL-RTGSKLAAVDGTGRFLEHVTIYPHAGGEGKVAAAKREFLRLVECHGIE 381 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124 +G NG+ G + F + + +P V E +V SA +I + Sbjct: 382 MVAVG-----NGTAGREMEQ---FAKETLAEGGKRIPVVMVSEAGASVYSASEIARE 430 >gi|308178439|ref|YP_003917845.1| transcriptional accessory protein [Arthrobacter arilaitensis Re117] gi|307745902|emb|CBT76874.1| putative transcriptional accessory protein [Arthrobacter arilaitensis Re117] Length = 809 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 21/132 (15%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFI 63 L+ + N+ + +D G R G +A+ D + A P K ++ L+ Sbjct: 340 LLAAPAGNKAVLGLDPGL-RTGVKVAVVDLTGKSVETATIYPHAPANKWNESLAVLIKLA 398 Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTV----- 116 + +G NG+ G T +I V E +V Sbjct: 399 KKHGTSLIAVG-----NGTAG---RETDRLAAEVIKELGGAGVDRVIVSEAGASVYSASE 450 Query: 117 SAQQILIDMNVS 128 A Q L DM+VS Sbjct: 451 LASQELPDMDVS 462 >gi|307706709|ref|ZP_07643514.1| protein tex [Streptococcus mitis SK321] gi|307617794|gb|EFN96956.1| protein tex [Streptococcus mitis SK321] Length = 709 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + +L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADSIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKEFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|262282625|ref|ZP_06060393.1| S1 RNA binding domain-containing protein [Streptococcus sp. 2_1_36FAA] gi|262261916|gb|EEY80614.1| S1 RNA binding domain-containing protein [Streptococcus sp. 2_1_36FAA] Length = 710 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKSAQIEASKKELSELIEE 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ +V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPHVSYVIVNESGASVYSASEL 412 >gi|310796681|gb|EFQ32142.1| CPSF A subunit region [Glomerella graminicola M1.001] Length = 1163 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%) Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90 +A S R A + R+ + SF + I ++G P +++GS Sbjct: 771 VAYSPALR--AFGIGTIHRELTNNEEVVTSSFQLVDEIVLGVVGKPFHLDGSIS--AEMV 826 Query: 91 RAFVHNMIDRKVYVPFVFWDERL---TTVSAQQILIDMNVSRKK 131 + + + + P ER T+ A + + ++ + Sbjct: 827 ESVIRAELPDSMGQPA----ERFIVGTSYLADPDIDESGDTKGR 866 >gi|156375168|ref|XP_001629954.1| predicted protein [Nematostella vectensis] gi|156216965|gb|EDO37891.1| predicted protein [Nematostella vectensis] Length = 501 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%) Query: 33 ISDPGRRFAHPRPFLVRKKVTQTALEL-LSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91 I DP A P + + + LE+ E + ++ M P + R Sbjct: 233 IGDPLDIIASG-PTVPDQSNPRDCLEIFRKLKAEEKVPKSVMQYLQGMADQPKPESQNNR 291 Query: 92 AFVH 95 F + Sbjct: 292 EFAN 295 >gi|295394635|ref|ZP_06804854.1| acetyl-coA carboxylase carboxyl transferase subunit alpha [Brevibacterium mcbrellneri ATCC 49030] gi|294972528|gb|EFG48384.1| acetyl-coA carboxylase carboxyl transferase subunit alpha [Brevibacterium mcbrellneri ATCC 49030] Length = 740 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140 + VP DER +TV A++ + + S + VD A Sbjct: 379 HRFDVP--GVDERFSTVRARRAVDNSGASIRLDAAYVDEAA 417 >gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ] gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ] Length = 762 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 13/101 (12%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + ID G R G LA D RF P +V Q +LL + I Sbjct: 323 GRRVLGIDPGL-RAGSKLAAVDQTGRFLEHVTIYPHTGAGRVDQARADLLRLVEAHGIEM 381 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDE 111 IG NG+ G + + ++P V E Sbjct: 382 IAIG-----NGTAGREMELFTK--ETLAKAGKHLPVVMVSE 415 >gi|210620543|ref|ZP_03292091.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275] gi|210155257|gb|EEA86263.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275] Length = 712 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + D G R G +A+ D +F A + K ++ EL+ I NI Sbjct: 311 GKNVMGFDPGI-RTGCKIAVVDRNGKFLDSAVVFVTGSQAKKSEAEKELIGLIKKHNIDI 369 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILID 124 IG NG+ + AFV MI + V +V E +V + L Sbjct: 370 IAIG-----NGTAS---RESEAFVAKMIKDNNLDVKYVIVSEAGASVYSASELAA 416 >gi|218767283|ref|YP_002341795.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria meningitidis Z2491] gi|121051291|emb|CAM07567.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria meningitidis Z2491] gi|319409548|emb|CBY89835.1| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Neisseria meningitidis WUE 2594] Length = 423 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%) Query: 26 TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 KRIG +A+ + A +LL+ A ++ +P + Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268 Query: 83 EGPRV--HSTRAFVHNMIDRKVYVPFV 107 E + + + F + R +P Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295 >gi|325129177|gb|EGC52022.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria meningitidis N1568] Length = 423 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%) Query: 26 TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 KRIG +A+ + A +LL+ A ++ +P + Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268 Query: 83 EGPRV--HSTRAFVHNMIDRKVYVPFV 107 E + + + F + R +P Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295 >gi|157738220|ref|YP_001490904.1| S1 RNA-binding domain-containing protein [Arcobacter butzleri RM4018] gi|157700074|gb|ABV68234.1| S1 RNA binding domain protein [Arcobacter butzleri RM4018] Length = 702 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70 NQ I +D G K G LA+ D A P ++ + ++ +L I I Sbjct: 315 NQMILGMDPGYKT-GCKLAVIDENGLYLDSAVIYPTKPKEDIVSSSKVVLDLIKKYKITT 373 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100 IG NG+ T F++ +I + Sbjct: 374 IAIG-----NGTAS---RETANFINELIKQ 395 >gi|313892334|ref|ZP_07825926.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] gi|313119193|gb|EFR42393.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] Length = 144 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 23/137 (16%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I SID G+++ G+A+ + + + + + E+ I IG Sbjct: 2 ILSIDPGSEKTGIAVVKKDGNLVM-KKIIKTECLEE---EIKILSKKFEIIETAIG---- 53 Query: 79 MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133 NG+ + M +P DE+ TT +Q N + + Sbjct: 54 -NGTHHKNLEKRIEKLYEEMKKE---IPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109 Query: 134 ------QKVDSIAAALI 144 + VD A +I Sbjct: 110 GMRTVDKPVDDYVAWVI 126 >gi|194366186|ref|YP_002028796.1| RNA binding S1 domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194348990|gb|ACF52113.1| RNA binding S1 domain protein [Stenotrophomonas maltophilia R551-3] Length = 795 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 16/93 (17%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AHPRPFL----VRKKVTQTA 56 ++DL+ + + + +D G R G +A+ D + A + R++ Q+ Sbjct: 321 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVVDATGKLVAT--ETIYPHEPRRQWEQSL 377 Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 + N+ IG NG+ Sbjct: 378 QTIKQLCAKHNVELIAIG-----NGTASRETDK 405 >gi|308388240|gb|ADO30560.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria meningitidis alpha710] Length = 423 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%) Query: 26 TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82 KRIG +A+ + A +LL+ A ++ +P + Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268 Query: 83 EGPRV--HSTRAFVHNMIDRKVYVPFV 107 E + + + F + R +P Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295 >gi|296417552|ref|XP_002838418.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634354|emb|CAZ82609.1| unnamed protein product [Tuber melanosporum] Length = 667 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 11/24 (45%) Query: 12 SLKPNQPIASIDLGTKRIGLAISD 35 S + I +D GT G+A D Sbjct: 2 SSSKQRLIIGLDYGTTYTGVAFCD 25 >gi|315636507|ref|ZP_07891743.1| S1 RNA binding domain protein [Arcobacter butzleri JV22] gi|315479156|gb|EFU69853.1| S1 RNA binding domain protein [Arcobacter butzleri JV22] Length = 701 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70 NQ I +D G K G LA+ D A P ++ + ++ +L I I Sbjct: 315 NQVILGMDPGYKT-GCKLAVIDENGLYLDSAVIYPTKPKEDIVSSSKVVLDLIKKYKITT 373 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100 IG NG+ T F++ +I + Sbjct: 374 IAIG-----NGTAS---RETANFINELIKQ 395 >gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 710 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LAI D A P + K+ L I T Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV +++ +V +E +V + L Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKNFPNTSYVIVNESGASVYSASEL 412 >gi|297571329|ref|YP_003697103.1| phosphofructokinase [Arcanobacterium haemolyticum DSM 20595] gi|296931676|gb|ADH92484.1| phosphofructokinase [Arcanobacterium haemolyticum DSM 20595] Length = 406 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 9/71 (12%) Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94 + TA +L +++ + ++GLP ++ P F Sbjct: 116 LHTIGGDDTNTTAADLAAYLHENDYELTVVGLPKTIDNDIVPIRQSLGAYTAAEQAAKFA 175 Query: 95 HNMIDRKVYVP 105 N+I P Sbjct: 176 QNVIGEHRSNP 186 >gi|260655132|ref|ZP_05860620.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1] gi|260630054|gb|EEX48248.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1] Length = 156 Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 39/159 (24%) Query: 19 IASIDLGTKRIG-LAISDPGRRFAHPRPFLVRKKVTQTALELLS-------------FIT 64 + ++D G ++G A +D G L+ K LL+ Sbjct: 2 LLAVDPGRDKVGWAAGTDRGELIGSG--ILLGKSAPAGLKALLAGGPRPADCTVNEGSWP 59 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124 E A ++G NG+ F ++ P DE+ TT+ A+ + Sbjct: 60 AERPRAVLLG-----NGTWSD------KF-RELLLGLGASPV-LVDEKNTTLQARSLYWG 106 Query: 125 MNVSRKKRI----------QKVDSIAAALILQEVLDRIS 153 ++ R R + +D +AA IL+ L S Sbjct: 107 IHPPRSWRRLIPLSLQTPPRPLDDLAALCILRRYLQSGS 145 >gi|332362463|gb|EGJ40263.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056] Length = 710 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKSAQIEASKKELSDLIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|322385014|ref|ZP_08058664.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100] gi|321270924|gb|EFX53834.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100] Length = 710 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|229820397|ref|YP_002881923.1| phosphofructokinase [Beutenbergia cavernae DSM 12333] gi|229566310|gb|ACQ80161.1| phosphofructokinase [Beutenbergia cavernae DSM 12333] Length = 408 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%) Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94 + TA +L ++ + ++GLP ++ P F Sbjct: 116 LHTIGGDDTNTTAADLAHYLEEHDYGLTVVGLPKTIDNDIVPIRQSLGAHTAAEQASEFA 175 Query: 95 HNMIDRKVYVP 105 N+I P Sbjct: 176 QNIIGEHRSNP 186 >gi|300113866|ref|YP_003760441.1| Tex-like protein protein-like protein [Nitrosococcus watsonii C-113] gi|299539803|gb|ADJ28120.1| Tex-like protein protein-like protein [Nitrosococcus watsonii C-113] Length = 786 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 14/93 (15%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70 ++P+ +D G R G +A+ D + A P +K+ L S + + Sbjct: 341 SRPVLGLDPGF-RTGVKVAVIDKTGKLLETATIYPHPPQKQWDAAINTLSSLLQKHGVEL 399 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103 IG NG+ T V ++ + Sbjct: 400 VGIG-----NGTAS---RETEQLVAELLKKFPQ 424 >gi|292491394|ref|YP_003526833.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4] gi|291579989|gb|ADE14446.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4] Length = 762 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 21/124 (16%) Query: 17 QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 +P+ +D G R G+ A+ D + A P +K+ + L + + Sbjct: 322 RPVMGLDPGF-RTGVKAAVIDQTGKLLETATIYPHPPQKQWEASMDTLSGLVKKHQVELI 380 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVS-----AQQILID 124 IG NG+ T V ++ ++ + + E +V A Q L + Sbjct: 381 SIG-----NGTAS---RETEQLVTELLKKEPEFKLQKLMVSEAGASVYSASEFAAQELPE 432 Query: 125 MNVS 128 ++VS Sbjct: 433 VDVS 436 >gi|332367155|gb|EGJ44891.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059] Length = 710 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|322420516|ref|YP_004199739.1| Tex-like protein [Geobacter sp. M18] gi|320126903|gb|ADW14463.1| Tex-like protein [Geobacter sp. M18] Length = 756 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 15/102 (14%) Query: 16 NQPIASIDLGTKRIGL---AISDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + +D G R G AIS+ GR A P K EL+ + + Sbjct: 321 GRRVLGVDPGL-RTGCKLAAISETGRFLEQATIYPHTGGAKAASAGGELVQLVERHDCRL 379 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDE 111 IG NG+ G T FV + V V +E Sbjct: 380 IAIG-----NGTGG---RETEVFVREALRAAGVKAETVMVNE 413 >gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 710 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LAI D A P + K+ L I T Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV +++ +V +E +V + L Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412 >gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 710 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LAI D A P + K+ L I T Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV +++ +V +E +V + L Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412 >gi|332358670|gb|EGJ36493.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355] Length = 710 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|332522618|ref|ZP_08398870.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332313882|gb|EGJ26867.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 710 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P + K+ Q +L + I+ Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIAQAKKDLAAIISD 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 NI IG NG+ + AFV ++ +V +E +V + L Sbjct: 364 YNIEIIAIG-----NGTAS---RESEAFVAEVLKDFPNCSYVIVNESGASVYSASEL 412 >gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004] gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004] Length = 780 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 12/99 (12%) Query: 9 LVKSLKPNQPIASIDLGTKRIGL--AISDPGR-RFAHPRPFLVRKKVTQTALELLSFITT 65 ++ + + +D G R G+ A+ D A + + + A + + T Sbjct: 318 MMAAPAGMRATMGLDPGL-RTGVKVAVVDSTGKLIATDTVYPHTGQEVKAAAAVAALCTK 376 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 + IG NG+ T F N+ + V Sbjct: 377 YQVELVAIG-----NGTAS---RETERFFANIQKQYPDV 407 >gi|229816713|ref|ZP_04446999.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM 13280] gi|229807689|gb|EEP43505.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM 13280] Length = 810 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 15/114 (13%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69 + ++D G R G +A+ D + P R+ + T ELL I Sbjct: 404 RGARVIALDPG-YRAGCKVAVLDEYGKLLDHTILYPTPPRRDIAGTKRELLRLARKHRIN 462 Query: 70 AFIIGLPLNMNGSEGPRVHSTR-AFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 ++G NG+ AF+ + + + +E +V + L Sbjct: 463 TIVVG-----NGTASRETEEVVSAFI---AESAPELRYTIVNEAGASVYSASKL 508 >gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas subvibrioides ATCC 15264] gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas subvibrioides ATCC 15264] Length = 179 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%) Query: 18 PIASIDLGTKRIG----LAISDPGRRFAHPRPF 46 I +D G +R G +A R AH Sbjct: 12 RILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVT 44 >gi|291542424|emb|CBL15534.1| Transcriptional accessory protein [Ruminococcus bromii L2-63] Length = 715 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%) Query: 15 PNQPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69 + + ++D G R G A+ D + P KK+ ++ LL I ++ Sbjct: 312 KGKTVLALDPG-YRTGCKTAVVDSTGKVLDTTVIYPTHSDKKIQESKQTLLRLIKKHHVD 370 Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 IG NG+ F I + P + Sbjct: 371 IISIG-----NGTASKETEM---FTAETIKEADH-PVYYM 401 >gi|301632867|ref|XP_002945501.1| PREDICTED: protein tex-like [Xenopus (Silurana) tropicalis] Length = 792 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T ++I Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDRLAADLIK 414 >gi|168704816|ref|ZP_02737093.1| RNA binding S1 domain protein [Gemmata obscuriglobus UQM 2246] Length = 1097 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 5/95 (5%) Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRFAH-PRPFLVRKKVTQTALE-LLSFITTENIAA 70 + + +ID G R G LA D + + +K A L I I+ Sbjct: 408 RGKKVLAIDPGI-RTGCKLAALDETGKLLEDAVIYPHNQKQAGDAKRKLEQLIRKYQISV 466 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105 IG SE FVH ++ P Sbjct: 467 IAIGNGTGCRDSEQLVADLIAEFVHRRLNPVPEAP 501 >gi|37521877|ref|NP_925254.1| hypothetical protein gll2308 [Gloeobacter violaceus PCC 7421] gi|35212876|dbj|BAC90249.1| gll2308 [Gloeobacter violaceus PCC 7421] Length = 136 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 25/141 (17%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 I ID G + GLA F Q ++ + +AA +IG Sbjct: 2 ILGIDPGRSKCGLA----LVGLDRKLYFRSVVASDQLLKQVERLLEDFPVAALVIG---- 53 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133 + + + + V V ER ++ A+ N R Sbjct: 54 -DQTTSE------YWQAQLRAAFPEVRLVAVPERRSSEQARARYWQFNPPRGLNRLLPQD 106 Query: 134 -----QKVDSIAAALILQEVL 149 + D + A ++++ L Sbjct: 107 FRVPPEAYDDVVALILVERYL 127 >gi|325690815|gb|EGD32816.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115] Length = 710 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|322391920|ref|ZP_08065384.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780] gi|321145146|gb|EFX40543.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780] Length = 709 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 21/123 (17%) Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59 LV LK + + D R G LA+ D + P +++ + L Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDVTGKMLTTQVIYPVKPASARQIEEAKRYL 356 Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 I + IG NG+ + AFV ++ V +V +E +V + Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVSEVLKDFPEVSYVIVNESGASVYSA 408 Query: 120 QIL 122 L Sbjct: 409 SEL 411 >gi|159902814|ref|YP_001550158.1| hypothetical protein P9211_02731 [Prochlorococcus marinus str. MIT 9211] gi|159887990|gb|ABX08204.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9211] Length = 146 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 25/142 (17%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 +ID G ++ GL ++D ++ V ++ + I I+G Sbjct: 5 IAIDPGREKCGLILADLDNHIVIEGKVVISSSVLDL---IIKWQNNYEIKLIILG----- 56 Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSRKK 131 NG+ F + + + +E TT A+ +++ + ++ Sbjct: 57 NGTSS-------NFWYLKLIEVCKLSIKLVEESGTTFRARGRYFEISSPNFFLRFIPKQM 109 Query: 132 RI--QKVDSIAAALILQEVLDR 151 RI + +DS AA L+L++ L R Sbjct: 110 RIPPKNLDSFAALLLLEDYLHR 131 >gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS] gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS] Length = 791 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G+ A+ D + A P RK + Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T ++I Sbjct: 382 LGKLCAKHGVNLIAIG-----NGTAS---RETDKLAADLIK 414 >gi|221236281|ref|YP_002518718.1| Holliday junction resolvase [Caulobacter crescentus NA1000] gi|220965454|gb|ACL96810.1| crossover junction endodeoxyribonuclease ruvC [Caulobacter crescentus NA1000] Length = 173 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%) Query: 7 EDLVKSLKPNQPIASIDLGTKRIG---LAI-SDPGRRFAHPRPFLVRKKVTQT-----AL 57 E ++ + + I +D G +R G LA+ AH K Sbjct: 3 EHMMNANRLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFE 62 Query: 58 ELLSFITTENIAAFII 73 + + I + Sbjct: 63 GITAVIEQHRPDEAAV 78 >gi|332638877|ref|ZP_08417740.1| transcriptional accessory protein [Weissella cibaria KACC 11862] Length = 727 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 16/115 (13%) Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALE-LLSF 62 L+ + + + D G R G LA+ D +F A P K + A E ++ Sbjct: 319 LMAAPLRGRVVLGFDPGI-RTGSKLAVVDENGKFLEKAVIYPHRAAKYDPKGAKETIIKL 377 Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTV 116 + +A IG NG+ ++ F+ ++I + +V +E +V Sbjct: 378 VKQYGVALVAIG-----NGTAS---RESQTFIADIIKSDLPDLQYVVVNESGASV 424 >gi|332712008|ref|ZP_08431938.1| restriction endonuclease [Lyngbya majuscula 3L] gi|332349336|gb|EGJ28946.1| restriction endonuclease [Lyngbya majuscula 3L] Length = 444 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALE 58 M I+D S+ + I ID G+K G+A + + R + R + + ALE Sbjct: 42 MPDRSIDD---SVTHSHRIK-IDPGSKTTGIAIVCEQTGRVTNALEINHRGQQIKKALE 96 >gi|227495533|ref|ZP_03925849.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Actinomyces coleocanis DSM 15436] gi|226831080|gb|EEH63463.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Actinomyces coleocanis DSM 15436] Length = 407 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%) Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94 + TA +L ++ + ++GLP ++ P F Sbjct: 116 LHTIGGDDTNTTAADLAHYLEENDYQLTVVGLPKTIDNDVVPVRQSLGAWTAAEEAAKFA 175 Query: 95 HNMIDRKVYVP 105 N+I P Sbjct: 176 RNIIGEHRSNP 186 >gi|324993865|gb|EGC25784.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405] Length = 710 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|262038236|ref|ZP_06011626.1| Fe(3+) ions import ATP-binding protein FbpC [Leptotrichia goodfellowii F0264] gi|261747703|gb|EEY35152.1| Fe(3+) ions import ATP-binding protein FbpC [Leptotrichia goodfellowii F0264] Length = 354 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 10/86 (11%) Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 +++ + ++L + E+ A + P M+G + RV RA + N + + Sbjct: 115 QEIDERVKKILQLMKMEDFAERV---PSQMSGGQQQRVSLARALIMNSS-------VLLF 164 Query: 110 DERLTTVSAQQILIDMNVSRKKRIQK 135 DE L+ + A+ L + RK + + Sbjct: 165 DEPLSNLDAKLRLHMRDEIRKLQQEV 190 >gi|125718359|ref|YP_001035492.1| transcriptional accessory ribonuclease (YqgFc, S1) [Streptococcus sanguinis SK36] gi|125498276|gb|ABN44942.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative [Streptococcus sanguinis SK36] gi|324991505|gb|EGC23438.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353] Length = 710 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|78778635|ref|YP_396747.1| hypothetical protein PMT9312_0250 [Prochlorococcus marinus str. MIT 9312] gi|78712134|gb|ABB49311.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 145 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 26/141 (18%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + SID G + GL + D ++ L + + + L+S+ ENI+ IIG Sbjct: 3 KLISIDPGKCKCGLVVVDLHQKKVDQAVVLNTEFLPKHVKTLISY---ENISKVIIG--- 56 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR----- 132 NG+ + F+ N + +E+ TT A++ ++ +R + Sbjct: 57 --NGTTSRQNIEKLEFIKN--------DLIIVEEKNTTFRAKKRYFELFPTRGLKTFLPK 106 Query: 133 -----IQKVDSIAAALILQEV 148 + +D+++A +IL++ Sbjct: 107 EIFIMNKNLDAVSALIILEDY 127 >gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus neapolitanus c2] gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus neapolitanus c2] Length = 188 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 13/25 (52%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAH 42 + ID G+ +G+A+ D R A Sbjct: 5 RVMGIDPGSVTMGVAVLDFERGSAT 29 >gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110] gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110] Length = 791 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G+ A+ D + A P RK + Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T ++I Sbjct: 382 LGKLCAKHGVNLIAIG-----NGTAS---RETDKLAADLIK 414 >gi|220911765|ref|YP_002487074.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6] gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6] Length = 830 Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALELLSFITTENIAA 70 N+P +D G R G +A+ D + P +K + L+ + Sbjct: 343 NRPTLGLDPGL-RTGVKVAVVDGTGKVVATDTVYPHAPARKWDEALASLVKLARQHAVEL 401 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104 IG NG+ T +I V Sbjct: 402 VAIG-----NGTAS---RETDKLAAELIKLLPDV 427 >gi|302390453|ref|YP_003826274.1| type IV pilus assembly protein PilM [Thermosediminibacter oceani DSM 16646] gi|302201081|gb|ADL08651.1| type IV pilus assembly protein PilM [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 12 SLKPNQPIASIDLGTKRIGLAI--SDPGR-RFAHPRPFLVRKKVTQTALELLSFITT 65 SL+ + + +DLGT RI +A+ D + A P P +T+ L + Sbjct: 5 SLRRQKGLLGVDLGTARIKVAVVRGDRLLAKGAVPAPAGGWDNITEMIAALAEAVQQ 61 >gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601] gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601] Length = 794 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T +I Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 414 >gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC] gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC] Length = 794 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58 + DL+ + + + +D G R G +A+ D + A P R+ + Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381 Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99 L + IG NG+ T +I Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 414 >gi|223985347|ref|ZP_03635418.1| hypothetical protein HOLDEFILI_02724 [Holdemania filiformis DSM 12042] gi|223962683|gb|EEF67124.1| hypothetical protein HOLDEFILI_02724 [Holdemania filiformis DSM 12042] Length = 255 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFV 94 A P + R + + I + P M+G + RV RA + Sbjct: 107 IALPL-TIQRVNPKKIEARIKKLSVQLGIEEVLKKYPYQMSGGQQQRVACARAMI 160 >gi|194017318|ref|ZP_03055930.1| bacitracin export ATP-binding protein BceA [Bacillus pumilus ATCC 7061] gi|194011186|gb|EDW20756.1| bacitracin export ATP-binding protein BceA [Bacillus pumilus ATCC 7061] Length = 253 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%) Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106 + + + I P ++G + R + RAF+H P Sbjct: 112 ISKTPKKEAFERFQQLAEDMGIYELRDKYPNELSGGQKQRTSAVRAFIHEPSLIFADEPT 171 Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKV-----DSIAAAL 143 D + SA +L + +KR + D +AA+ Sbjct: 172 GALD----SKSASDLLNKLQDFNRKRKATIVMVTHDPVAASY 209 >gi|157693351|ref|YP_001487813.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032] gi|157682109|gb|ABV63253.1| ABC superfamily ATP binding cassette transporter, binding protein [Bacillus pumilus SAFR-032] Length = 253 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%) Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106 + + + I P ++G + R + RAF+H P Sbjct: 112 ISKTPKKEAFERFQQLAEDMGIYELRDKYPNELSGGQKQRTSAVRAFIHEPSLIFADEPT 171 Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKV-----DSIAAAL 143 D + SA +L + +KR + D +AA+ Sbjct: 172 GALD----SKSASDLLNKLQDFNRKRKATIVMVTHDPVAASY 209 >gi|171780107|ref|ZP_02921011.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281455|gb|EDT46890.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 710 Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P + K+ Q+ +L I++ Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIEQSKKDLAELISS 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 YGIEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412 >gi|313889985|ref|ZP_07823622.1| Tex-like protein N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121643|gb|EFR44745.1| Tex-like protein N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 713 Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P + K+ Q +L + I+ Sbjct: 310 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIAQAKKDLAALISD 366 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV +++ +V +E +V + L Sbjct: 367 YKIEIIAIG-----NGTAS---RESEAFVADVLKDFPNCSYVIVNESGASVYSASEL 415 >gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris DSM 8797] gi|148845783|gb|EDL60125.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris DSM 8797] Length = 828 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 14/93 (15%) Query: 16 NQPIASIDLGTKRIG--LAISDPGR-RFAHPRPFLVRKKVTQTALE--LLSFITTENIAA 70 Q I +ID G R G LA+ D A ++ + L +T Sbjct: 331 GQRILAIDPGL-RTGCKLAVLDELGYCVATDLVYVTGSADKKEFARKKLAEVMTEHQCQL 389 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103 IG NG+ T + MI++ + Sbjct: 390 VAIG-----NGT---ACRETEEIITEMIEQDLP 414 >gi|224047235|ref|XP_002194171.1| PREDICTED: similar to S1 RNA-binding domain-containing protein 1 [Taeniopygia guttata] Length = 1207 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 15 PNQPIASIDLGTKRIG--LA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 + + +D G K G LA IS + +L + + A ++ + N + Sbjct: 756 RGRALMGVDPGYKH-GCKLAIISPTSQILHTDVVYLHSGQGFREAEKIKRLLLQYNCSTV 814 Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 +IG NG+ T A+ ++I +K + P Sbjct: 815 VIG-----NGT---ACRETEAYFADLIMKKYFAPLDVV 844 >gi|72383450|ref|YP_292805.1| hypothetical protein PMN2A_1614 [Prochlorococcus marinus str. NATL2A] gi|72003300|gb|AAZ59102.1| conserved hypothetical protein [Prochlorococcus marinus str. NATL2A] Length = 145 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 29/142 (20%) Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77 SID G K+ GL ++D + + + + + + I IIG Sbjct: 5 ISIDPGMKKCGLLLADM-----QSGEVIEAGVASLNKFSDLVSQWNEDHEITKIIIG--- 56 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSRKKRI 133 NG+ ++ N + R + +ER +T+ A+ + R Sbjct: 57 --NGTN-------CKYIENKLKRNNSFNINYVNERGSTLRARFRYWEIWPPNYFIRWLPK 107 Query: 134 QK------VDSIAAALILQEVL 149 + +D+I A ++L++ L Sbjct: 108 EILFPPANLDAIVALILLEDFL 129 >gi|319939357|ref|ZP_08013717.1| S1 RNA binding domain-containing protein [Streptococcus anginosus 1_2_62CV] gi|319811343|gb|EFW07638.1| S1 RNA binding domain-containing protein [Streptococcus anginosus 1_2_62CV] Length = 712 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + +L I Sbjct: 309 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVPPAKAAQIEASKQDLSDLIDQ 365 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 366 FGVEIIAIG-----NGTAS---RESEAFVAEVLKTHPNVSYVIVNESGASVYSASEL 414 >gi|33601194|ref|NP_888754.1| hypothetical protein BB2210 [Bordetella bronchiseptica RB50] gi|33602484|ref|NP_890044.1| hypothetical protein BB3509 [Bordetella bronchiseptica RB50] gi|33575629|emb|CAE32707.1| phage-related conserved hypothetical protein [Bordetella bronchiseptica RB50] gi|33576923|emb|CAE34003.1| phage-related conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 227 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-------LLSFITT 65 L PN I ++DLGTK +G A+ R +H + L+ IT Sbjct: 72 LGPNVTILALDLGTK-LGWAVRGRDGRTSHGTEVFTPRASWSPGQRWLRARSFLVEVITQ 130 Query: 66 ENIAAF 71 + A Sbjct: 131 RQVHAI 136 >gi|91779869|ref|YP_555077.1| putative polyphosphate glucokinase [Burkholderia xenovorans LB400] gi|91692529|gb|ABE35727.1| putative polyphosphate glucokinase [Burkholderia xenovorans LB400] Length = 266 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 18/110 (16%) Query: 17 QPIASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVRKKVTQTALELLSFITTEN 67 + I +ID+G GL AI D R A P P + V A + + E Sbjct: 13 ERILAIDVGG--TGLKAAIIDADGKMKTERVRVATPHPCTPDQLVDALAKLVAPLVEQEP 70 Query: 68 IAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKVYVPFVFWD 110 IG P + N G A ++ R +P + Sbjct: 71 PTRMSIGFPGVVRNNRILTAPHFGVEGWHDIALADSLAQRLGGLPVRMIN 120 >gi|254522654|ref|ZP_05134709.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14] gi|219720245|gb|EED38770.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14] Length = 795 Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 16/93 (17%) Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AH----PRPFLVRKKVTQTA 56 ++DL+ + + + +D G R G +A+ D + A P R++ Q+ Sbjct: 321 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVVDATGKLVATDTIYPHE--PRRQWEQSL 377 Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 + N+ IG NG+ Sbjct: 378 QTIKQLCAKHNVELIAIG-----NGTASRETDK 405 >gi|15789627|ref|NP_279451.1| hypothetical protein VNG0368C [Halobacterium sp. NRC-1] gi|169235339|ref|YP_001688539.1| CinA C-terminal domain-containing protein [Halobacterium salinarum R1] gi|10579987|gb|AAG18931.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726405|emb|CAP13188.1| cinA C-terminal domain protein [Halobacterium salinarum R1] Length = 171 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%) Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65 +GT IG+A + A +VR++ + + I Sbjct: 117 VGTAYIGVAYA-GDWGTATSATTVVRREFDGDRQAVKAQIAR 157 >gi|313667339|ref|YP_004049740.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM 14977] gi|313153970|gb|ADR37820.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM 14977] Length = 172 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71 I ID G+K+IGLA + PR + R + +L +I ++ Sbjct: 2 ILGIDPGSKKIGLA---ALQTHPRPRVYKSRVLPVKNLTQLGDWIEEASLVVL 51 >gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces brasiliensis DSM 5305] gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces brasiliensis DSM 5305] Length = 167 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%) Query: 13 LKPNQPIASIDLGTKRI--GL--A-----ISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63 + Q I ID G R G+ A I D G A + ++ + A E+ + I Sbjct: 1 MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60 Query: 64 TTENIAAFII 73 + +I Sbjct: 61 NDWKPSVMVI 70 >gi|15890736|ref|NP_356408.1| ABC transporter, nucleotide binding/ATPase protein (polyamine) [Agrobacterium tumefaciens str. C58] gi|15159011|gb|AAK89193.1| ABC transporter, nucleotide binding/ATPase protein (polyamine) [Agrobacterium tumefaciens str. C58] Length = 360 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 12/77 (15%) Query: 40 FAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97 A P R K A E+L + E P M+G + RV RA Sbjct: 98 IAFPLKVRRRSKADIDAKVKEMLRLVRLEGFEDR---KPAQMSGGQQQRVALARALA--- 151 Query: 98 IDRKVYVPFVFWDERLT 114 P + DE L+ Sbjct: 152 ----YDPPVLLMDEPLS 164 >gi|315127007|ref|YP_004069010.1| amino acid decarboxylase [Pseudoalteromonas sp. SM9913] gi|315015521|gb|ADT68859.1| amino acid decarboxylase [Pseudoalteromonas sp. SM9913] Length = 636 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 7/66 (10%) Query: 47 LVRKKVTQTALELLSF-----ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101 R + +E L I E+ + L ++ G R +S F+ + + Sbjct: 31 FERDDIHIDIIERLELKQALDIVEEDGDIQAVVLSWDLQNKVGERTYS--RFIEQLKGIR 88 Query: 102 VYVPFV 107 + +P Sbjct: 89 LELPVY 94 >gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379] Length = 723 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70 + + ID G R G LA D RF P ++ Q ELL + T +I Sbjct: 323 GKRVLGIDPGF-RTGSKLAALDATGRFMEHVTIYPHTGEARIHQARQELLRLVETFDIEM 381 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124 +G NG+ G + F + +P V E +V SA +I + Sbjct: 382 IAVG-----NGTAGREMEI---FSRETLAGAGWQIPVVSVSEAGASVYSASEIARE 429 >gi|284049365|ref|YP_003399704.1| Tex-like protein [Acidaminococcus fermentans DSM 20731] gi|283953586|gb|ADB48389.1| Tex-like protein [Acidaminococcus fermentans DSM 20731] Length = 724 Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 14/98 (14%) Query: 16 NQPIASIDLGTKRIG--LAISDPGR-RFAHPRPFLVRKKVTQTALE--LLSFITTENIAA 70 + +D G R G +A+ DP H + + + + E LLS I ++ Sbjct: 317 GHTVMGLDPG-YRTGCKVAVVDPTGQVLDHGVIQVTQSEGQKKKAEALLLSMIQKHHVTL 375 Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF 108 IG NG+ F +I + Sbjct: 376 LSIG-----NGTASYETEQ---FAARLIQEHQLKDVHY 405 >gi|222152742|ref|YP_002561919.1| transcription accessory protein [Streptococcus uberis 0140J] gi|222113555|emb|CAR41362.1| putative transcription accessory protein [Streptococcus uberis 0140J] Length = 710 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P + K+ EL I++ Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTHVIYPVPPASQTKIQLAKKELAEIISS 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 +I IG NG+ + AFV +++ +V +E +V + L Sbjct: 364 YDIEIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412 >gi|56807868|ref|ZP_00365703.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes M49 591] Length = 580 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LAI D + P + K+ L I T Sbjct: 307 KGEMVLGFDPAF---RTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIET 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV +++ +V +E +V + L Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412 >gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684] gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684] Length = 747 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 16/113 (14%) Query: 19 IASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAAFII 73 + ID G R G LA+ F P + + Q + ++ + I + + Sbjct: 350 VLGIDPGL-RTGSKLAVVSATGAFLDHVTIYPHTQKAQQPQFSRQISALIEKYAVEMVAV 408 Query: 74 GLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124 G NG+ G + FV + D P V +E +V SA +I + Sbjct: 409 G-----NGTGGREMEQ---FVRQSLRDYDHSCPVVMVNEAGASVYSASEIARE 453 >gi|294101286|ref|YP_003553144.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM 12261] gi|293616266|gb|ADE56420.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM 12261] Length = 154 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 42/158 (26%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---------VTQTALELLSFITTENIA 69 I ID G +IG A +D A +V K+ + + LL ++ Sbjct: 2 ILGIDPGKDKIGWAFADSKG--ALLFSGIVNKEELSSFWEVFMQKQWHNLLPWLKEREKE 59 Query: 70 --------AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-- 119 ++G NG+ F + +R + +E TT+ A+ Sbjct: 60 PLLSESELTIVVG-----NGT---TCKEVLLF---LKERGLDAQV--VEEYGTTLEARKV 106 Query: 120 --QILIDMNVSR------KKRIQKVDSIAAALILQEVL 149 ++ V + + + VD +AA +I++ L Sbjct: 107 YWRLHPPQGVWKFIPKSLRVPNRDVDDLAAFVIIRRYL 144 >gi|163839885|ref|YP_001624291.1| ATPase family protein [Renibacterium salmoninarum ATCC 33209] gi|162953361|gb|ABY22876.1| ATPase family protein [Renibacterium salmoninarum ATCC 33209] Length = 313 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 19/124 (15%) Query: 1 MSILL--IEDLVKSLKPNQPIASIDL-GTKR--I----GLAISDPGRRFAHPRPFLVRKK 51 M +L + D+ + P I +D+ G+K I G+ I+D A+ + + Sbjct: 1 MRLLPTILRDVSSTSIPPTAIIGLDIGGSKTRGILWHDGVVIADEQTGSAN-VQNVSIDE 59 Query: 52 VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS-TRAFVHNMIDRKVYVPF-VFW 109 Q +L S + T+ + G S G + A + VP V Sbjct: 60 ARQNLQKLFSLLPTDGVEQIFAG-------SGGIDTEADAEALASLIRPHVPGVPVTVVH 112 Query: 110 DERL 113 D RL Sbjct: 113 DTRL 116 >gi|327470660|gb|EGF16116.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330] Length = 710 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVAPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|315221406|ref|ZP_07863327.1| S1 RNA binding domain protein [Streptococcus anginosus F0211] gi|315189525|gb|EFU23219.1| S1 RNA binding domain protein [Streptococcus anginosus F0211] Length = 709 Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + +L + I Sbjct: 306 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVPPAKAAQIEASKQDLSNLIDQ 362 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 363 FGVEIIAIG-----NGTAS---RESEAFVAEVLKTHPNVSYVIVNESGASVYSASEL 411 >gi|255016321|ref|ZP_05288447.1| transposase [Bacteroides sp. 2_1_7] Length = 338 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 19/99 (19%) Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 I++L S IDLG K LA+ GR F +P K Q +L+ L + Sbjct: 91 TIQELPASAIQGNTTLGIDLGIKS--LAVCSDGRTFDNP-------KNLQRSLDRLKLLQ 141 Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103 L GS R V + +R Sbjct: 142 KR--------LSRKQKGSANRNEARIR--VARLQERIAN 170 >gi|327490297|gb|EGF22085.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058] Length = 710 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412 >gi|327474740|gb|EGF20145.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408] Length = 710 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412 >gi|325687255|gb|EGD29277.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72] Length = 710 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412 >gi|324994814|gb|EGC26727.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678] gi|327461023|gb|EGF07356.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057] gi|327463129|gb|EGF09450.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1] Length = 710 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412 >gi|325696116|gb|EGD38007.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160] gi|328946764|gb|EGG40902.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087] Length = 710 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LA+ D + P P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSGLIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|150020177|ref|YP_001305531.1| RNA-binding S1 domain-containing protein [Thermosipho melanesiensis BI429] gi|149792698|gb|ABR30146.1| RNA binding S1 domain protein [Thermosipho melanesiensis BI429] Length = 662 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 16/92 (17%) Query: 15 PNQPIASIDLGTKRIG---LAISDPGR---RFAHPRPFLVRKKVTQTALELLSFITTENI 68 N I +ID G K G +A+ D A P + ++L + + Sbjct: 289 KNTRILAIDPGNKT-GCKIVAL-DELGNPLEHAVIYPTAPYFDTKNSEKKILKMLQNHKL 346 Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100 +IG NG+ T+ F+ I + Sbjct: 347 KLIVIG-----NGTAS---RETQQFIAKTIKK 370 >gi|257452603|ref|ZP_05617902.1| transcription accessory protein [Fusobacterium sp. 3_1_5R] gi|257466460|ref|ZP_05630771.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917617|ref|ZP_07913857.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059143|ref|ZP_07923628.1| transcription accessory protein [Fusobacterium sp. 3_1_5R] gi|313684819|gb|EFS21654.1| transcription accessory protein [Fusobacterium sp. 3_1_5R] gi|313691492|gb|EFS28327.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC 25563] Length = 723 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 17/94 (18%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFA-----HPRPFLVRKKVTQTALEL-LSFITTEN 67 + I ++D G R G +AI D + + +K + A + L +I Sbjct: 317 EKTILALDPG-YRTGCKVAILDKHGFYQENDVFFLVEGMHHEKQLEDARKKALKYIKKYG 375 Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101 I +IG NG+ T +FV +I + Sbjct: 376 IDLVVIG-----NGTAS---RETESFVAKLIREE 401 >gi|296162062|ref|ZP_06844860.1| ROK family protein [Burkholderia sp. Ch1-1] gi|295887683|gb|EFG67503.1| ROK family protein [Burkholderia sp. Ch1-1] Length = 266 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 18/110 (16%) Query: 17 QPIASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVRKKVTQTALELLSFITTEN 67 + I +ID+G GL AI D R A P P + V A + + E Sbjct: 13 ERILAIDVGG--TGLKAAIIDADGKMKTERVRVATPHPCTPDQLVDALAKLVAPLVAQEP 70 Query: 68 IAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKVYVPFVFWD 110 IG P + N G A ++ R +P + Sbjct: 71 PTRMSIGFPGVVRNNRILTAPHFGVEGWHDIALADSLAQRLGGLPVRMIN 120 >gi|295700582|ref|YP_003608475.1| ROK family protein [Burkholderia sp. CCGE1002] gi|295439795|gb|ADG18964.1| ROK family protein [Burkholderia sp. CCGE1002] Length = 274 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 20/128 (15%) Query: 1 MSILLIEDLVKSLKPNQP--IASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVR 49 M + ++ + I +ID+G GL AI D R A P P Sbjct: 1 MPTRNKNAVKRNAPKSGSEHILAIDVGG--TGLKAAIIDANGQMKTERVRVATPHPCTPD 58 Query: 50 KKVTQTALELLSFITTENIAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKV 102 + V A + I IG P + N G A ++ R Sbjct: 59 QLVDALAQLVAPLIEQVQPVCISIGFPGVVRNNRILTAPHFGIEGWHDIALADSLARRLG 118 Query: 103 YVPFVFWD 110 +P + Sbjct: 119 GLPVRMIN 126 >gi|320104703|ref|YP_004180294.1| Tex-like protein [Isosphaera pallida ATCC 43644] gi|319751985|gb|ADV63745.1| Tex-like protein [Isosphaera pallida ATCC 43644] Length = 1315 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIA 69 NQ + +ID G + G +A+ DP + + + ++ L+L I ++ Sbjct: 428 NQTVLAIDPGFRS-GCKVAVLDPHGVL-LEHTVIYPHPPQNRRSEAKLQLKDLIAKHQVS 485 Query: 70 AFIIGLPLNMNGSEGPRVHSTRA 92 IG NG+ A Sbjct: 486 VVAIG-----NGTACRETEEVIA 503 >gi|75675014|ref|YP_317435.1| hypothetical protein Nwi_0818 [Nitrobacter winogradskyi Nb-255] gi|74419884|gb|ABA04083.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 177 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64 ++ I ++DLGT R G A+ R A + + L F Sbjct: 22 SRTILALDLGT-RTGWAVLPRSGRIASGVTEFRPGRFEGAGMAFLRFEK 69 >gi|121534977|ref|ZP_01666795.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans Nor1] gi|121306390|gb|EAX47314.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans Nor1] Length = 141 Score = 33.4 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 28/144 (19%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D G + G+A+ R + A + A ++G Sbjct: 5 VIAVDPGRDKCGVAVVSRDR----GVLYKAVVPTAALAAAVAKLAREFGAATVVVG---- 56 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133 + + G V + + + + V DE +T A+ N R R Sbjct: 57 -DRTTGSAA------VKQLSVQPIDGRRLHIVTVDEHRSTDEARHRYWLENPPRGLRRLI 109 Query: 134 --------QKVDSIAAALILQEVL 149 VD A ++ + Sbjct: 110 PTTMQVPPAPVDDYVAVILAERYF 133 >gi|16127468|ref|NP_422032.1| Holliday junction resolvase [Caulobacter crescentus CB15] gi|20978751|sp|Q9A3G6|RUVC_CAUCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC gi|13424922|gb|AAK25200.1| Holliday junction resolvase [Caulobacter crescentus CB15] Length = 169 Score = 33.4 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%) Query: 18 PIASIDLGTKRIG---LAI-SDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68 I +D G +R G LA+ AH K + + I Sbjct: 10 RILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIEQHRP 69 Query: 69 AAFII 73 + Sbjct: 70 DEAAV 74 >gi|310816123|ref|YP_003964087.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Ketogulonicigenium vulgare Y25] gi|308754858|gb|ADO42787.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Ketogulonicigenium vulgare Y25] Length = 273 Score = 33.4 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 16/94 (17%) Query: 48 VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV 107 VRK++ + A ++L+ + +A F P ++G R R FV P + Sbjct: 124 VRKRLPEDADQVLADL---GLADFADARPAQLSGGMRQRAAIARGFVQ-------GAPLM 173 Query: 108 FWDERLT-----TVSAQQILIDMNVSRKKRIQKV 136 DE + T A + L ++V +KR + Sbjct: 174 LMDEPFSALDELTRDAVR-LRLLDVWERKRKTVI 206 >gi|323351224|ref|ZP_08086880.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66] gi|322122448|gb|EFX94159.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66] Length = 710 Score = 33.4 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LAI D + P ++ + EL I Sbjct: 307 KGRVVLGFDPAF---RTGAKLAIVDATGKMLTTHVIYPVAPAKPAQIEASKKELSELIEQ 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 + IG NG+ + AFV ++ V +V +E +V + L Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412 >gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782] gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782] Length = 710 Score = 33.4 bits (76), Expect = 10.0, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 20/117 (17%) Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65 + + D R G LAI D + P + K+ L I T Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIET 363 Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 I IG NG+ + AFV +++ +V +E +V + L Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.315 0.190 0.615 Lambda K H 0.267 0.0577 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,662,901,170 Number of Sequences: 14124377 Number of extensions: 183428239 Number of successful extensions: 455020 Number of sequences better than 10.0: 2369 Number of HSP's better than 10.0 without gapping: 3120 Number of HSP's successfully gapped in prelim test: 1068 Number of HSP's that attempted gapping in prelim test: 446173 Number of HSP's gapped (non-prelim): 4283 length of query: 160 length of database: 4,842,793,630 effective HSP length: 122 effective length of query: 38 effective length of database: 3,119,619,636 effective search space: 118545546168 effective search space used: 118545546168 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 77 (33.8 bits)